Citrus Sinensis ID: 015738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVII
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHcccccHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHccccEEEEEc
Coil and Loop (DISEMBL)
MDLNFFKaasagnsepfkDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLqvnakgdtplhlaakFGHFEIVRVLIERAKlaqrgdeepesgvepFRQMIRMVNNEKNTALHEAVSQGNVDVVKILtredpgypysannygktplymAAEYENRSDMLRGLLENRTSASFDMVLALLENstsvshegpngkTALHAAAMRSFAVDTALPKLLEKKKNLIketdqygwtpihyAAYYGNYRTVNLLLEtdqsasniadkDRKMTALHLAAGKGDARTVERIisgnpkcyelvdnrgcnfLHYAMVSFHVGQLRnllennplarslidegdaegntplhvlaavrpkefhdvmnrstqanydavnkqnvSVRHVFNYGYTELKVII
Flexible Loop (DISEMBL)
mdlnffkaasagnsepfkdmERDVIERLLTakakntilhiniisserenvSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKlaqrgdeepesgvepfrQMIRMVNNEKNTALHEAVSQGNVDVVKILTRedpgypysannygkTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNliketdqygwtPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLaagkgdartveRIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQanydavnkqnvsvrHVFNYGYTELKVII
Low Complexity Region (SEG)
MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAlpkllekkknlikETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVII
Disordered region (IsUnstruct)
**********************DVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAK******************************LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALL****************LHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETD*************TALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEG***GNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVI*
Disordered Region (DISOPRED)
MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVII
Disordered Region (DISEMBL)
********ASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKL***********VEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVII
Disordered Region (DISPRO)
MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.630	0.129	0.314	3e-16
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.623	0.063	0.309	3e-16
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.615	0.063	0.309	4e-16
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.703	0.151	0.306	6e-16
Q9ERK0	786	Receptor-interacting seri	no	no	0.668	0.340	0.274	7e-16
P57078	832	Receptor-interacting seri	no	no	0.668	0.322	0.277	1e-15
Q8N8A2	993	Serine/threonine-protein	no	no	0.658	0.265	0.247	1e-15
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.586	0.053	0.314	1e-15
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.596	0.456	0.270	2e-15
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.596	0.127	0.281	3e-15

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 136/305 (44%), Gaps = 52/305 (17%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
            N  G   LHLA+K GH E+V  L++R           E+ V+           + NTAL
Sbjct: 53  CNQNGLNALHLASKEGHVEVVSELLQR-----------EANVD-------AATKKGNTAL 94

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF- 187
           H A   G  +VVK+L          + N G TPLYMAA+ EN  +++R LL+N  S S  
Sbjct: 95  HIASLAGQAEVVKVLVTNGANVNAQSQN-GFTPLYMAAQ-ENHLEVVRFLLDNGASQSLA 152

Query: 188 ----------------DMVLALL-ENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLE 230
                           D V++LL EN T      P    ALH AA +      AL  LL+
Sbjct: 153 TEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLP----ALHIAARKDDTKAAAL--LLQ 206

Query: 231 KKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD 290
              N   E+ + G+TP+H AA+YGN     LLL    +    A  D  +T LH+A+ +G+
Sbjct: 207 NDTNADVES-KSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARND--ITPLHVASKRGN 263

Query: 291 ARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN 350
           A  V+ ++    K  +     G   LH    S H   +  LL+ +    + I      G 
Sbjct: 264 ANMVKLLLDRGAK-IDAKTRDGLTPLHCGARSGHEQVVEMLLDRS----APILSKTKNGL 318

Query: 351 TPLHV 355
           +PLH+
Sbjct: 319 SPLHM 323

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.
Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 140/320 (43%), Gaps = 70/320 (21%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
            N  G   LHLAAK GH  +V+ L+ R                     +     + NTAL
Sbjct: 60  CNQNGLNALHLAAKEGHVGLVQELLGRGS------------------SVDSATKKGNTAL 101

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN---RTSA 185
           H A   G  +VVK+L +E       + N G TPLYMAA+ EN  D+++ LLEN   +++A
Sbjct: 102 HIASLAGQAEVVKVLVKEGANINAQSQN-GFTPLYMAAQ-ENHIDVVKYLLENGANQSTA 159

Query: 186 SFD---------------MVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLE 230
           + D                V  LLEN T      P    ALH AA +      AL  LL+
Sbjct: 160 TEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLP----ALHIAARKDDTKSAAL--LLQ 213

Query: 231 -------KKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE----TDQSASNIADKDRKM 279
                  + K ++  T + G+TP+H AA+YGN     LLL      D +A N       +
Sbjct: 214 NDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARN------GI 267

Query: 280 TALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP--L 337
           T LH+A+ +G+   V+ ++    +  +     G   LH A  S H   +  LLE     L
Sbjct: 268 TPLHVASKRGNTNMVKLLLDRGGQ-IDAKTRDGLTPLHCAARSGHDQVVELLLERGAPLL 326

Query: 338 ARSLIDEGDAEGNTPLHVLA 357
           AR+        G +PLH+ A
Sbjct: 327 ART------KNGLSPLHMAA 340

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 141/323 (43%), Gaps = 76/323 (23%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
            N  G   LHLAAK GH  +V+ L+ R                     +     + NTAL
Sbjct: 60  CNQNGLNALHLAAKEGHVGLVQELLGRGS------------------SVDSATKKGNTAL 101

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN---RTSA 185
           H A   G  +VVK+L +E       + N G TPLYMAA+ EN  D+++ LLEN   +++A
Sbjct: 102 HIASLAGQAEVVKVLVKEGANINAQSQN-GFTPLYMAAQ-ENHIDVVKYLLENGANQSTA 159

Query: 186 SFD---------------MVLALLENSTSVSHEGPNGKT---ALHAAAMRSFAVDTALPK 227
           + D                V  LLEN T        GK    ALH AA +      AL  
Sbjct: 160 TEDGFTPLAVALQQGHNQAVAILLENDT-------KGKVRLPALHIAARKDDTKSAAL-- 210

Query: 228 LLE-------KKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE----TDQSASNIADKD 276
           LL+       + K ++  T + G+TP+H AA+YGN     LLL      D +A N     
Sbjct: 211 LLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARN----- 265

Query: 277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP 336
             +T LH+A+ +G+   V+ ++    +  +     G   LH A  S H   +  LLE   
Sbjct: 266 -GITPLHVASKRGNTNMVKLLLDRGGQ-IDAKTRDGLTPLHCAARSGHDQVVELLLERKA 323

Query: 337 --LARSLIDEGDAEGNTPLHVLA 357
             LAR+        G +PLH+ A
Sbjct: 324 PLLART------KNGLSPLHMAA 340

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 151/346 (43%), Gaps = 64/346 (18%)

Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           V E+L K  A +  V   G TPLH+A+  GH  IV+ L++R             G  P  
Sbjct: 382 VMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQR-------------GASP-- 426

Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDM 174
               + N +  T LH A   G+ +V K L +        A +  +TPL+ AA   +    
Sbjct: 427 ---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKANAKAKD-DQTPLHCAARIGHTG-- 480

Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN 234
                         MV  LLEN  S +     G T LH AA R   VDTAL  LLEK+ +
Sbjct: 481 --------------MVKLLLENGASPNLATTAGHTPLHTAA-REGHVDTAL-ALLEKEAS 524

Query: 235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTV 294
               T + G+TP+H AA YG  R   LLLE D +  N A K+  +T LH+A    +   V
Sbjct: 525 QACMTKK-GFTPLHVAAKYGKVRLAELLLEHD-AHPNAAGKN-GLTPLHVAVHHNNLDIV 581

Query: 295 ERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDA------E 348
           + ++      +    N             H+   +N +E   +ARSL+  G +      +
Sbjct: 582 KLLLPRGGSPHSPAWN--------GYTPLHIAAKQNQIE---VARSLLQYGGSANAESVQ 630

Query: 349 GNTPLHVLAAVRPKEFHDVMNR---STQANYDAVNKQNVSVRHVFN 391
           G TPLH+ A    +E H  M     S QAN +  NK  ++  H+ +
Sbjct: 631 GVTPLHLAA----QEGHTEMVALLLSKQANGNLGNKSGLTPLHLVS 672

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 53/321 (16%)

Query: 22  RDVIERLLT------AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDT 75
           R ++E LL       AK ++    ++  +   +  ST+    +LEK  A + +V+ +G T
Sbjct: 486 RGIVELLLARKTSVNAKDEDQWTALHFAAQNGDEASTRL---LLEK-NASVNEVDFEGRT 541

Query: 76  PLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQG 135
           P+H+A + G   IVR L+ R             GV+     + +   +    LH A  QG
Sbjct: 542 PMHVACQHGQENIVRTLLRR-------------GVD-----VGLQGKDAWLPLHYAAWQG 583

Query: 136 NVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALL 194
           ++ +VK+L ++ PG   +A    G+TPL++AA+        RG         + +   L+
Sbjct: 584 HLPIVKLLAKQ-PGVSVNAQTLDGRTPLHLAAQ--------RG--------HYRVARILI 626

Query: 195 ENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYG 254
           +  + V+      +T LH AA       T+  +LL  +    +     G+T +H AA  G
Sbjct: 627 DLCSDVNICSLQAQTPLHVAAETGH---TSTARLLLHRGAGKEALTSEGYTALHLAAQNG 683

Query: 255 NYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCN 314
           +  TV LL+E  + A  +A      TALHLAA +G +  VE ++S +    +L D +G +
Sbjct: 684 HLATVKLLIE--EKADVMARGPLNQTALHLAAARGHSEVVEELVSAD--LIDLSDEQGLS 739

Query: 315 FLHYAMVSFHVGQLRNLLENN 335
            LH A    H   +  LL++ 
Sbjct: 740 ALHLAAQGRHSQTVETLLKHG 760

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 148/321 (46%), Gaps = 53/321 (16%)

Query: 22  RDVIERLLT------AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDT 75
           R V+E LL       AK ++    ++  +   +  ST+    +LEK  A + +V+ +G T
Sbjct: 532 RGVVELLLARKISVNAKDEDQWTALHFAAQNGDESSTRL---LLEK-NASVNEVDFEGRT 587

Query: 76  PLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQG 135
           P+H+A + G   IVR+L+ R             GV+     + +   +    LH A  QG
Sbjct: 588 PMHVACQHGQENIVRILLRR-------------GVD-----VSLQGKDAWLPLHYAAWQG 629

Query: 136 NVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALL 194
           ++ +VK+L ++ PG   +A    G+TPL++AA+        RG         + +   L+
Sbjct: 630 HLPIVKLLAKQ-PGVSVNAQTLDGRTPLHLAAQ--------RG--------HYRVARILI 672

Query: 195 ENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYG 254
           +  + V+      +T LH AA       T+  +LL  +    +     G+T +H AA  G
Sbjct: 673 DLCSDVNVCSLLAQTPLHVAAETGH---TSTARLLLHRGAGKEAMTSDGYTALHLAARNG 729

Query: 255 NYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCN 314
           +  TV LL+E  + A  +A      TALHLAA  G +  VE ++S +    +L D +G +
Sbjct: 730 HLATVKLLVE--EKADVLARGPLNQTALHLAAAHGHSEVVEELVSAD--VIDLFDEQGLS 785

Query: 315 FLHYAMVSFHVGQLRNLLENN 335
            LH A    H   +  LL + 
Sbjct: 786 ALHLAAQGRHAQTVETLLRHG 806

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 148/371 (39%), Gaps = 107/371 (28%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEP-FRQMIRMVNNEKN-- 125
           V+  G+TPLH+AA++GH  ++  LI        G +  + G+   F   +  +N   +  
Sbjct: 335 VDKDGNTPLHVAARYGHELLINTLI------TSGADTAKCGIHSMFPLHLAALNAHSDCC 388

Query: 126 ------------------TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE 167
                             T LH A + GNV+ +K+L      + +  +  G+TPL+ AA 
Sbjct: 389 RKLLSSGFEIDTPDKFGRTCLHAAAAGGNVECIKLLQSSGADF-HKKDKCGRTPLHYAA- 446

Query: 168 YENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAL-- 225
                           +  F  +  L+    +V+     G+TALH AA      +  +  
Sbjct: 447 ---------------ANCHFHCIETLVTTGANVNETDDWGRTALHYAAASDMDRNKTILG 491

Query: 226 ------------PKLLEKKKNLIKE-----------TDQYGWTPIHYAAYYGNYRTVNLL 262
                        +L EK+  L  E            D+ G+  IHYAA YG+ + + LL
Sbjct: 492 NAHDNSEELERARELKEKEATLCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELL 551

Query: 263 LETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS----------------------G 300
           LE   S    +D     + LHLAA  G  + +E ++                       G
Sbjct: 552 LERTNSGFEESDSGATKSPLHLAAYNGHHQALEVLLQSLVDLDIRDEKGRTALDLAAFKG 611

Query: 301 NPKCYELVDNRGCNF-----------LHYAMVSFHVGQLRNLLE--NNPLARSLIDEGDA 347
           + +C E + N+G +            LH ++++ H   LR LLE  +NP A   +D  DA
Sbjct: 612 HTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLEIADNPEA---VDVKDA 668

Query: 348 EGNTPLHVLAA 358
           +G TPL +  A
Sbjct: 669 KGQTPLMLAVA 679

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 125/283 (44%), Gaps = 48/283 (16%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
            N  G   LHLA+K GH E+V  L++R           E+ V+           + NTAL
Sbjct: 70  CNQNGLNALHLASKEGHVEVVSELLQR-----------EANVD-------AATKKGNTAL 111

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF- 187
           H A   G  +VVK+L          + N G TPLYMAA+ EN  ++++ LL+N  S S  
Sbjct: 112 HIASLAGQAEVVKVLVTNGANVNAQSQN-GFTPLYMAAQ-ENHLEVVKFLLDNGASQSLA 169

Query: 188 ----------------DMVLALL-ENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLE 230
                           D V++LL EN T      P    ALH AA +    DT    LL 
Sbjct: 170 TEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLP----ALHIAARKD---DTKAAALLL 222

Query: 231 KKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD 290
           +  N      + G+TP+H AA+YGN     LLL    +    A  D  +T LH+A+ +G+
Sbjct: 223 QNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARND--ITPLHVASKRGN 280

Query: 291 ARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE 333
           A  V+ ++    K  +     G   LH    S H   +  LL+
Sbjct: 281 ANMVKLLLDRGAKI-DAKTRDGLTPLHCGARSGHEQVVEMLLD 322

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 135/281 (48%), Gaps = 42/281 (14%)

Query: 22  RDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE----KCPALLLQVNAKGDTPL 77
           +  + + +TA+  +T LH  +    RE  +   +E I E    +   LL + N  G+T L
Sbjct: 5   KKTMTKQMTARRDDTPLHTAV----REGKTDLLLEMIGEHDGVELKELLAEQNQSGETAL 60

Query: 78  HLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNV 137
           ++AA++G+ ++V++L++ +     G +  ++G + F               H A   GN+
Sbjct: 61  YVAAEYGYTDMVKILMKHSDSVLAGTK-AKNGFDAF---------------HIAAKNGNL 104

Query: 138 DVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENS 197
            V+ +L   +P   ++ ++   T L+ AA  +   +++  LL+          LA +  S
Sbjct: 105 QVLDVLIEANPELSFTFDSSKTTALHTAAS-QGHGEIVCFLLDKGVD------LAAIARS 157

Query: 198 TSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYR 257
                   NGKTALH+AA     V   + KL+EKK  ++   D+ G T +H A    N  
Sbjct: 158 --------NGKTALHSAARNGHTV--IVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTE 207

Query: 258 TVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
            V++L+E D S  N AD ++  T LH+A  K  A  V+ ++
Sbjct: 208 IVDVLMEADGSLINSAD-NKGNTPLHIAVRKNRAEIVQTVL 247

Arabidopsis thaliana (taxid: 3702)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 123/288 (42%), Gaps = 49/288 (17%)

Query: 29  LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEI 88
           L   A +T LHI       E V     +E  + C      +  KG TPLH+AAK+G   +
Sbjct: 498 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 551

Query: 89  VRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDP 148
             +L+ER       D  P +                 T LH AV   N+D+VK+L     
Sbjct: 552 AELLLER-------DAHPNAA-----------GKNGLTPLHVAVHHNNLDIVKLLLPRG- 592

Query: 149 GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD------------------MV 190
           G P+S    G TPL++AA+ +N+ ++ R LL+   SA+ +                  MV
Sbjct: 593 GSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 651

Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA 250
             LL    + +    +G T LH  A         +  +L K   ++  T + G+TP+H A
Sbjct: 652 ALLLSKQANGNLGNKSGLTPLHLVAQEGH---VPVADVLIKHGVMVDATTRMGYTPLHVA 708

Query: 251 AYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
           ++YGN + V  LL+    A   A      + LH AA +G    V  ++
Sbjct: 709 SHYGNIKLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 754

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
255585399	575	ankyrin repeat-containing protein, putat	0.830	0.579	0.459	1e-76
224127079	394	predicted protein [Populus trichocarpa]	0.955	0.972	0.433	3e-76
224127106	575	predicted protein [Populus trichocarpa]	0.952	0.664	0.426	8e-75
224127104	405	predicted protein [Populus trichocarpa]	0.952	0.943	0.426	2e-74
224127098	399	predicted protein [Populus trichocarpa]	0.952	0.957	0.424	1e-73
255551947	582	ankyrin repeat-containing protein, putat	0.887	0.611	0.425	9e-72
224145572	395	predicted protein [Populus trichocarpa]	0.962	0.977	0.421	5e-69
224107373	391	predicted protein [Populus trichocarpa]	0.875	0.897	0.389	2e-61
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.840	0.529	0.400	2e-54
297745200	579	unnamed protein product [Vitis vinifera]	0.820	0.568	0.413	2e-54

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 232/361 (64%), Gaps = 28/361 (7%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIIS-SERENVSTKFVEEIL 59
           M L+ +KAA  G  +PFK+    +   LL    K+TILH+N+ S SER   ST FV+E L
Sbjct: 27  MSLDLYKAAEDGKIDPFKNFAGPL--DLLVTPIKDTILHLNLASPSER---STSFVKEAL 81

Query: 60  EKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRM 119
           + CP +LLQ+NA GDT LH+AA++GH +IV++LIE  + AQ  D E  S  E  RQM+RM
Sbjct: 82  DMCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTR-AQHQDLE--SAGEAVRQMLRM 138

Query: 120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLL 179
            N  K TALHEA    + D+V++L  +DP + +S+N++G+TPLY+A+E        RG L
Sbjct: 139 TNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASE--------RGHL 190

Query: 180 ENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKET 239
           E        +V+ +L+  TS+++ GPNGKTALHAAAM        +  +L+KK +L+ + 
Sbjct: 191 E--------VVVIMLKACTSLAYGGPNGKTALHAAAMHRHG--GIVHAILDKKTSLVNKA 240

Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
           D+ GWTP+HYAAY G  R V  LL  D+  +  ADK R+ TALHLAA + + +++  II 
Sbjct: 241 DEMGWTPLHYAAYIGASRVVKQLLGYDKYVAYAADKARRRTALHLAACQANIKSMREIIF 300

Query: 300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV 359
             P C +LVDNRG N  HYA++S     L+ LL  NP    L++E DA+GNTPLH+LAA+
Sbjct: 301 KCPDCCKLVDNRGWNVAHYAVISKSDDALKILLA-NPSCIYLVNEKDAQGNTPLHLLAAL 359

Query: 360 R 360
           +
Sbjct: 360 Q 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 177/408 (43%), Positives = 254/408 (62%), Gaps = 25/408 (6%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           MD   FKAA AGN  PF++ +   + +LLTA  +NTILH+ + +   E  ST FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTS-LNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFLE 58

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
           +CP LL Q N +G+TPLHLAA+ GH  +V+VLI+RAK       +PESGV   + M+RM 
Sbjct: 59  RCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALP---ADPESGVTKAKMMLRMT 115

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N E++TALHEA       VV+ILT+EDP + Y AN +G+TPLY+AA          G L 
Sbjct: 116 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASI--------GFL- 166

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD 240
             +     +V  +L N  SV + GP+G+TALHAA+M +   +TA  K+LEK+K L K TD
Sbjct: 167 MFSEEHGKVVDGILGNCISVDYGGPDGRTALHAASMAA-NYETAR-KMLEKEKKLTKTTD 224

Query: 241 QYGWTPIHYAAY--YGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
           + GW+P+HYA+Y  + N   V +LLE D SA++IA+ ++K TALH+AA +G    ++ I+
Sbjct: 225 ENGWSPLHYASYCDWSNAPIVEVLLEYDASAASIAETEKKRTALHIAAIQGHVDAMKEIV 284

Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
           S  P C +LVDNRG N LHYA+ S      +  L+   LAR L  E D +GNTP H++AA
Sbjct: 285 SRCPACCDLVDNRGWNALHYAVASKDTKVFKECLKIPELAR-LQTEKDDKGNTPFHLIAA 343

Query: 359 V---RPKEFHDVMNRST---QANYDAVNKQNVSVRHVFNYGYTELKVI 400
           +   +P+  + + N S    +     +NK+ +SV  ++   + E++VI
Sbjct: 344 LAHEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQVI 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 173/406 (42%), Positives = 250/406 (61%), Gaps = 24/406 (5%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           MD   FKAA AGN  PF++ +   + +LLT   +NTILH+ + +   E  ST FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPD-ENTILHVYLKNQSSEPESTDFVDKFLE 59

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
           +CP LL Q N +G+TPLHL A++GH  +V+VLI+RAK A   D  PESGV   + M+RM 
Sbjct: 60  RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAK-ALPAD--PESGVTKAKMMLRMT 116

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N E++TALHEA       VV+ILT+EDP + Y AN +G+TPLY+A           G L 
Sbjct: 117 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSI--------GFL- 167

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD 240
             +     +V  +L N  SV + GP+G+TALHAA+M +   +TA  K+LEK+K L K TD
Sbjct: 168 MFSEEHGKVVDGILGNCISVDYGGPDGRTALHAASMAA-NYETA-RKMLEKEKKLTKTTD 225

Query: 241 QYGWTPIHYAAY--YGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
           + GW+P+HYA+Y  + N   V +LLE D S ++IA+ ++K TALH+AA +G    ++ I+
Sbjct: 226 ENGWSPLHYASYCDWSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIV 285

Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
           S  P C +LVDNRG N LHYA+ S      +  L+   LAR L  E D +GNTP H++AA
Sbjct: 286 SRCPACCDLVDNRGWNALHYAVASKDTKVFKECLKIPELAR-LQTEKDDKGNTPFHLIAA 344

Query: 359 V---RPKEFHDVMNRST---QANYDAVNKQNVSVRHVFNYGYTELK 398
           +   +P+  + + N S    +     +NK+ +SV  ++   + E++
Sbjct: 345 LAHEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQ 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/408 (42%), Positives = 246/408 (60%), Gaps = 26/408 (6%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           MD   FKAA+ G+ +PF+  +   +++LLT   +NTILH+ + +  RE   T FV  ILE
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQ-TCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 70

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
            CP LL Q N KG+ PLHLAA +GH  +V+VLI+RAK       + ESGV   ++M+RM 
Sbjct: 71  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP---TDSESGVTEAKKMLRMT 127

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N E++TALHEA       VV+ILT+EDP +PYSAN +G+TPLY+AA    R    RG   
Sbjct: 128 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERG--- 184

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD 240
                   +V  +L N  SV + GPNG+TAL+AA       D    KLLEK+K L + TD
Sbjct: 185 -------KVVDGILGNCISVDYGGPNGRTALNAAIW--VRDDETARKLLEKEKKLTQTTD 235

Query: 241 QYGWTPIHYAAYY-GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
           + GW+P+H+AA Y  + R V +LLE D SA+ IA+ +++ TALH+AA +G    ++ I+S
Sbjct: 236 ENGWSPLHHAACYDWSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVS 295

Query: 300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV 359
             P C ELVDNRG N LHYA+ S       + L+   LAR L  + D +GNTP H++AA+
Sbjct: 296 RCPACCELVDNRGWNALHYAVASKDRVAFVHCLKIPELAR-LGTKKDDKGNTPFHLIAAL 354

Query: 360 RPKE-------FHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVI 400
             ++       F+D    S +     +NK+ +SV  ++   + E++VI
Sbjct: 355 AHQQKQWQRVLFNDSYGYSGREIRCGLNKRQLSVDDIYEGNFAEIQVI 402

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/408 (42%), Positives = 245/408 (60%), Gaps = 26/408 (6%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           MD   FKAA+ G+ +PF+  +   +++LLT   +NTILH+ + +  RE   T FV  ILE
Sbjct: 7   MDPVLFKAAAEGDIDPFEKYQ-TCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 64

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
            CP LL Q N KG+ PLHLAA +GH  +V+VLI+RAK       + ESGV   ++M+RM 
Sbjct: 65  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP---TDSESGVTEAKKMLRMT 121

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N E++TALHEA       VV+ILT+EDP +PYSAN +G+TPLY+AA    R     G   
Sbjct: 122 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGG--- 178

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD 240
                   +V  +L N  SV + GPNG+TAL+AA       D    KLLEK+K L + TD
Sbjct: 179 -------KVVDGILGNCISVDYGGPNGRTALNAAIW--VRDDETARKLLEKEKKLTQTTD 229

Query: 241 QYGWTPIHYAAYY-GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
           + GW+P+H+AA Y  + R V +LLE D SA+ IA+ +++ TALH+AA +G    ++ I+S
Sbjct: 230 ENGWSPLHHAACYDWSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVS 289

Query: 300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV 359
             P C ELVDNRG N LHYA+ S       + L+   LAR L  + D +GNTP H++AA+
Sbjct: 290 RCPACCELVDNRGWNALHYAVASKDRVAFVHCLKIPELAR-LGTKKDDKGNTPFHLIAAL 348

Query: 360 RPKE-------FHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVI 400
             ++       F+D    S +     +NK+ +SV  ++   + E++VI
Sbjct: 349 AHQQKQWQRVLFNDSYGYSGREIRCGLNKRQLSVDDIYEGNFAEIQVI 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  276 bits (707), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 168/395 (42%), Positives = 239/395 (60%), Gaps = 39/395 (9%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           MD   +KAA   N    K   +D+   L     KNTILHI++ S  + +V   FV+E L+
Sbjct: 51  MDAELYKAAVEENINSLKKYAKDL--DLQVTPKKNTILHIHLNSPNKRSVD--FVKEALQ 106

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
            CP+LL + N+ GD PLH+AA++GH +IV++L+E+AK AQ  +E+ E+G    +QM +M 
Sbjct: 107 LCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLLEQAK-AQ--NEDLETGRGAMKQMWQMQ 163

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N +K+ ALHEA    ++ VV++LTR DP + Y AN+Y +TPLY+AA         RG L 
Sbjct: 164 NEKKDMALHEAARNNHLSVVRLLTRLDPHFLYPANDYEETPLYLAAA--------RGYLY 215

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAM---RSFAVDTALPKLLEKKKNLIK 237
                   +V+ +L    SV++ GP GKTALH A +   R   ++     +L+++K L  
Sbjct: 216 --------VVIEILNTCKSVAYGGPKGKTALHGAVLSGNRGIVLE-----ILKREKRLTI 262

Query: 238 ETDQYGWTPIHYAAY-----YGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR 292
           E ++ GWTP+HYAAY     +G Y  V  LLE D+SA+ + DKDRK TALHLAA +G+ R
Sbjct: 263 EAEENGWTPLHYAAYGNDQNFGAYVIVQRLLECDKSAAYVVDKDRKRTALHLAACRGNVR 322

Query: 293 TVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTP 352
            ++ IIS  P C E+ D+RG N LHYA+VS +   L+ +L N+ L   L+++ DA+GNTP
Sbjct: 323 IMKEIISKCPDCCEIADDRGWNVLHYAVVSKNDEALQVILRNSSLI-DLVNDRDAQGNTP 381

Query: 353 LHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVR 387
           LH+LA  RP     V +     N  A  KQNV  R
Sbjct: 382 LHLLAVSRPYLPSFVFDGEDDLN--AFYKQNVLSR 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 171/406 (42%), Positives = 235/406 (57%), Gaps = 20/406 (4%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           M+   +KAA AGN  PFKD     +  LLT K KNTILH+ + +  + + ST FV +I++
Sbjct: 1   MEPKLYKAAEAGNINPFKDRLPTSLNELLTPK-KNTILHVYLENQRKGSKSTDFVGQIID 59

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
            CP LLLQ N KG+ PLH AA++G   +VRVLI+RAK A+  D   ESGV   ++M+RM 
Sbjct: 60  MCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAK-ARPTDL--ESGVTEAKKMLRMT 116

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N EK+TALH A       VV+ILT+EDP + YS N +G+TPLY+AA         R   E
Sbjct: 117 NEEKDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKRH-EE 175

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD 240
           NR      ++  +L N  SV + G +G+TALHAA M  +       K+LE+  +L + TD
Sbjct: 176 NRKK----VINEILSNCKSVEYCGSHGRTALHAAGM--YGDHETTRKILERDASLTRRTD 229

Query: 241 QYGWTPIHYAAYYGNY----RTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVER 296
             GW+P+HYA ++ ++     TV +LLE D SA+ I D +++ TALHLAA +G       
Sbjct: 230 DDGWSPLHYAVFFRDFVHSVSTVEVLLEHDVSAAYIVDSEKR-TALHLAASRGTWAAAIA 288

Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL 356
           I++  P   ELVD+RG N LHYA ++   G +R      P    LI E D +GNTPLH+ 
Sbjct: 289 IMNTCPASCELVDSRGWNALHYAAIT-RKGHIR-FSRWIPKFDKLIYEKDNDGNTPLHLF 346

Query: 357 AAVR--PKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVI 400
           AA    P+ F     R        +NKQN+SV  +    + + KVI
Sbjct: 347 AAFGNFPQMFLRSDWRHAYKKMCGLNKQNLSVDDILRGHFPQKKVI 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107373|ref|XP_002333525.1| predicted protein [Populus trichocarpa] gi|222837132|gb|EEE75511.1| predicted protein [Populus trichocarpa]

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/401 (38%), Positives = 226/401 (56%), Gaps = 50/401 (12%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           MD   FK A AGN  PF++ +   +++LLT   +NTILH                     
Sbjct: 1   MDPVLFKVAEAGNIGPFENCQ-TCLDQLLTPD-ENTILH--------------------- 37

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
                    N KG+ PLHLAA++GH  +V+VLI+ AK       +PESGV   ++M+RM 
Sbjct: 38  --------ANKKGEIPLHLAARYGHSNVVKVLIDCAKALP---TDPESGVTEAKKMLRMT 86

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N E++TALHEA       VV+ILT+EDP + YSAN  G+TPLY+AA         R  LE
Sbjct: 87  NEEQDTALHEAARNSRGHVVEILTKEDPEFSYSANVLGETPLYIAAAS-------RKCLE 139

Query: 181 NRTSASFDMVLALLENSTSVSH-EGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKET 239
            +      ++  +L N  SV +  GPNG+TALH AA+R   ++TA  KLLEK+K L + T
Sbjct: 140 RKK-----VIDEILTNCISVDYGAGPNGRTALH-AAVRVRDLETAR-KLLEKEKKLTQTT 192

Query: 240 DQYGWTPIHYAAYY-GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
           D+ GW+P+HYAA Y  + R V +LLE D SA+ IA+ +++ TALH+AA +G    ++ I+
Sbjct: 193 DENGWSPLHYAACYDWSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVEIMKEIV 252

Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
           S  P C ELVDNRG N LHYA+      ++       PL   L  + D +GNTP H++AA
Sbjct: 253 SRCPACCELVDNRGWNALHYAVARKDSSRVFKECLRIPLLARLKTKKDDKGNTPFHLIAA 312

Query: 359 VRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKV 399
           +  ++         +     +NK+ +S + ++   + E++V
Sbjct: 313 LAREQRKWARVLFNERKICILNKRKLSAKDIYRGNFGEIQV 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 151/377 (40%), Positives = 210/377 (55%), Gaps = 40/377 (10%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           MD   ++AA+ G  +  + M  D     LT   KNT+LHI     + + V        L 
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEDHFVVQLTPN-KNTVLHIAAQFGQLDCVQYILG---LN 102

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
               LLL+ N KGDTPLH AA+ GH  +V+ LI+ AK   R  +E ESGV   + ++RM 
Sbjct: 103 SSSFLLLRPNLKGDTPLHHAAREGHLTVVKALIDAAK---RLHQEIESGVGGDKAIMRMT 159

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N E+NTALHEAV   + +VVK LT EDP + Y AN  G T LYMAAE        RG   
Sbjct: 160 NEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANITGYTLLYMAAE--------RGFE- 210

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMR-----SFA---VDTALP-----K 227
                  D+V  ++   TS +H G  G+TALHAA +R     ++A   +++  P     +
Sbjct: 211 -------DLVNLIIGTCTSPAHSGMMGRTALHAAVIRNDQGITYADPSLESRFPCEMTAR 263

Query: 228 LLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET--DQSASNIADKDRKMTALHLA 285
           LLE K +L KE D+ GW+P+H AAY G    V  LL+   D+S + +  KD K TALH+A
Sbjct: 264 LLEWKPDLTKEVDENGWSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALHIA 323

Query: 286 AGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPL--ARSLID 343
           A +     V+R++S +P C E VD++G N LH A++S       N+  +N L     LI+
Sbjct: 324 ANRHHQDIVKRLLSHSPDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGLIN 383

Query: 344 EGDAEGNTPLHVLAAVR 360
           E DA+G+TPLH+LA+ +
Sbjct: 384 EKDAKGDTPLHLLASYQ 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745200|emb|CBI39192.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/363 (41%), Positives = 211/363 (58%), Gaps = 34/363 (9%)

Query: 1   MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
           MD + + AAS GN    + +E   + R  T K+ NTILHI     + + V     + ILE
Sbjct: 17  MDADLYTAASKGNISKLEQLEACDLGRQRTPKS-NTILHIAAQFGQLDCV-----KRILE 70

Query: 61  KCP-ALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRM 119
               + LL++N KGDTPLHLAA+ GH  +V  LI+ AK       E ESGV   + ++RM
Sbjct: 71  LTSFSSLLKINLKGDTPLHLAAREGHLTVVEALIQAAKPPN----EIESGVGVDKTILRM 126

Query: 120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLL 179
            N E +TALHEAV   + +VVK+L +EDP + Y  N  G TP++MA E        RG  
Sbjct: 127 ANKEGDTALHEAVRYHHPEVVKLLIKEDPQFTYGPNISGGTPIHMAVE--------RG-- 176

Query: 180 ENRTSASFDMVLALLENS-TSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKE 238
                   D+V  ++EN+ TS ++ G  G+TALHAA +R+    T   KLLE K +L +E
Sbjct: 177 ------HVDLVQIIIENTRTSPAYSGILGRTALHAAVIRNDQEITT--KLLEWKPSLTEE 228

Query: 239 TDQYGWTPIHYAAYYGNYRTV--NLLLETDQSASNIADKDRKMTALHLAAGKGDARTVER 296
            DQ GW+P+H AAY+G Y T+   LL ++ +S + +  K    TALHLAA +G    V+ 
Sbjct: 229 VDQNGWSPLHCAAYFG-YTTIVRQLLNKSVKSVAYLGIKPGMQTALHLAAIRGHKDIVDL 287

Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPL-ARSLIDEGDAEGNTPLHV 355
           ++S  P C E VD+ G N LH+AM+       R  L+N+ L  R L++E DA+G+TPLH+
Sbjct: 288 LLSYYPDCCEQVDDNGKNVLHFAMMRKQDYYPRMFLQNDGLRVRGLLNERDAQGDTPLHL 347

Query: 356 LAA 358
           LA+
Sbjct: 348 LAS 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.900	0.520	0.267	7e-21
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.825	0.578	0.268	2e-19
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.935	0.559	0.240	1.7e-17
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.391	0.229	0.294	1.3e-16
MGI|MGI:88026	1961	Ank3 "ankyrin 3, epithelial" [	0.638	0.130	0.296	1.2e-14
UNIPROTKB|K7GLA8	1847	ANK3 "Uncharacterized protein"	0.638	0.138	0.296	1.5e-14
ZFIN|ZDB-GENE-060621-1	3980	ank3a "ankyrin 3a" [Danio reri	0.748	0.075	0.295	1.6e-14
UNIPROTKB|F1PJ90	1782	ANK3 "Uncharacterized protein"	0.638	0.143	0.296	1.9e-14
ZFIN|ZDB-GENE-041010-165	3538	ank2b "ankyrin 2b, neuronal" [	0.638	0.072	0.312	1.9e-14
UNIPROTKB|Q12955	4377	ANK3 "Ankyrin-3" [Homo sapiens	0.638	0.058	0.296	3.9e-14

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 7.0e-21, P = 7.0e-21
 Identities = 104/389 (26%), Positives = 170/389 (43%)

Query:     6 FKAASAGNSEPFKDME-RDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
             F   S GN E  + +  R +    + +   ++ILH+ +     E      V+EI+ +CP 
Sbjct:   103 FSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLE-----LVKEIVCECPR 157

Query:    65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKL--AQRGDEEPESGVEPFRQMIRMVNN 122
             LLL+ N+ G TPLH+AA  GH  IV   +       A+  +EE E  + P+  +++  + 
Sbjct:   158 LLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESER-MNPY--VLK--DK 212

Query:   123 EKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR 182
             + NTAL+ A+     ++   L   +   P+  N YG + L++A    + S +++ +L  +
Sbjct:   213 DGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVS-LVKAIL--K 269

Query:   183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQY 242
                + D     L+   S       G+ +L   A+ + ++                E D  
Sbjct:   270 IIGNKD-----LKGKKSNLESKLQGQKSLAHVALVTQSIAGVLDVILDEYPSLMDERDIN 324

Query:   243 GWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNP 302
             GWT +  AA+ G Y  V  LLE       + D+D     +H AA KG    VE  I   P
Sbjct:   325 GWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFP-IHTAAEKGHENIVEEFIKRCP 383

Query:   303 KCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPK 362
                 L++  G N LH A  +     + N+L  N     L    D +GNTPLH+  AV   
Sbjct:   384 GSKHLLNKLGQNVLHIAAKNGKFW-ISNMLIINKDTEHLGVGQDVDGNTPLHL--AVMNW 440

Query:   363 EFHDV--MNRSTQANYDAVNKQNVSVRHV 389
              F  +  + RS++      NK  +  R +
Sbjct:   441 HFKSITWLARSSKI-LKVRNKNGLRARDI 468

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 97/361 (26%), Positives = 165/361 (45%)

Query:     1 MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAK--NTILHINIISSERENVSTKFVEEI 58
             M+   F   S G+ E   +M + V   +   K+   +++LH+       E      V+ I
Sbjct:    81 MNTEVFSGLSDGDKECL-EMLKGVGTPMACLKSDRGDSVLHLAARWGHLE-----LVKNI 134

Query:    59 LEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKL-AQRGDEEPESGVEPFRQMI 117
             + +CP L+L++N K   PLH+AA  GH  IV  L+      + R  EE    + P+  ++
Sbjct:   135 ISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPY--VL 192

Query:   118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
             R  +   NTALH A+    +++   L  E+    +  NN G + LYMA E  + + +++ 
Sbjct:   193 R--DKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVT-LVKE 249

Query:   178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXX 237
             +L  +T+ + D     LE   S       G+  L   A+ + ++                
Sbjct:   250 IL--KTAGNND-----LEGRNSNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLED- 301

Query:   238 ETDQYGWTPIHYAAYYGNYRTV-NLLLETDQSASNI--ADKDRKMTALHLAAGKGDARTV 294
             E D+ G T + +AA  G Y+ V NLL   D+S  N+   D+D     +H AA  G  R V
Sbjct:   302 ERDEEGRTCLSFAASIGFYKGVCNLL---DRSTKNVYVCDEDGSFP-IHTAAENGHIRIV 357

Query:   295 ERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLH 354
             + I+   P    +++  G N LH A        +++L+ ++      + + D +GNTPLH
Sbjct:   358 KEILKRCPHSKHMLNKLGQNVLHIAAKIGEHNLVKSLMRSDDTKHLGVGQ-DVDGNTPLH 416

Query:   355 V 355
             +
Sbjct:   417 L 417

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 97/403 (24%), Positives = 175/403 (43%)

Query:     1 MDLNFFKAASAGNSEPFKDMERD--VIERLLTAKAKNTILHINIISSERENVSTKFVEEI 58
             M    F   S G  E  + +  +   +ER+  +   ++ILHI       E      V+EI
Sbjct:    67 MTPEIFGGMSNGEKECLEKLRSNGTPMERV-KSNTGDSILHIAAKWGHLE-----LVKEI 120

Query:    59 LEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIER--AKLAQRGDEEPESGVEPFRQM 116
             + +CP LL + N+   TPLH+A   GH ++V  L+    + LA    EE E G+ P   +
Sbjct:   121 IFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESE-GLNP--HV 177

Query:   117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENR-SDML 175
             ++  + + NTAL+ A+    +++   L   D   P+  NN G + LY A +  N+  D++
Sbjct:   178 LK--DEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVDAGNKFEDLV 235

Query:   176 RGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXX 235
             + +L+  T  + D  +      + +      G   L   A+++ ++              
Sbjct:   236 KAILKT-TDDNVDREVRKFNLDSKLQ-----GNKHLAHVALKAKSIGVLDVILDEYPSLM 289

Query:   236 XXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
               E D+ G T + Y A  G Y+ +  +L        + D+D     +H AA       ++
Sbjct:   290 D-EQDEDGRTCLSYGASIGYYKGLCNILNRSTKGVYVCDQDGSFP-IHSAAKNEHYEIIK 347

Query:   296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
               I   P    L++  G N LH A  +        +L ++   + L    D +GNTPLH+
Sbjct:   348 EFIKRCPASKYLLNRLGQNILHVAAKN-EASLTAYMLMHDKDTKHLGVGQDVDGNTPLHL 406

Query:   356 LAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELK 398
               AV   +F  +   +++ N++ +  +N S     +   +E+K
Sbjct:   407 --AVMNWDFDSITCLASR-NHEILKLRNKSGLRARDIAESEVK 446

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 48/163 (29%), Positives = 73/163 (44%)

Query:   207 GKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETD 266
             G+  L  AA+ S + D               E D+ G T + + A  G ++ V  LL   
Sbjct:   269 GRKYLAHAALNSLSTDILDVILNEYPSLVD-ERDEEGRTCLSFGASIGYHKGVCNLLNRS 327

Query:   267 QSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVG 326
             +    + D D     +HLA  KG  + V+ I    P    L++ +G N LH A  S    
Sbjct:   328 RKGVFVCDDDGSYP-IHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFR 386

Query:   327 QLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV--RPKEFHDV 367
              LR+L  +  +   L +E D +GNTPLH LA +  RP+   ++
Sbjct:   387 ILRHLTAHEQI-NHLANEKDVDGNTPLH-LATIYWRPRAVREL 427

GO:0005739 "mitochondrion" evidence=ISM

MGI|MGI:88026 Ank3 "ankyrin 3, epithelial" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 89/300 (29%), Positives = 130/300 (43%)

Query:    70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
             N  G   LHLA+K GH E+V  L++R           E+ V+           + NTALH
Sbjct:    54 NQNGLNALHLASKEGHVEVVSELLQR-----------EANVDA-------ATKKGNTALH 95

Query:   130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF-- 187
              A   G  +VVK+L          + N G TPLYMAA+ EN  +++R LL+N  S S   
Sbjct:    96 IASLAGQAEVVKVLVTNGANVNAQSQN-GFTPLYMAAQ-ENHLEVVRFLLDNGASQSLAT 153

Query:   188 -D----MVLALLENSTSVS----HEGPNGKT---ALHAAAMRSFAVDTAXXXXXXXXXXX 235
              D    + +AL +    V          GK    ALH AA +    DT            
Sbjct:   154 EDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKD---DTKAAALLLQNDTN 210

Query:   236 XXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
                  + G+TP+H AA+YGN     LLL    +    A  D  +T LH+A+ +G+A  V+
Sbjct:   211 ADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARND--ITPLHVASKRGNANMVK 268

Query:   296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
              ++    K  +     G   LH    S H   +  LL+ +     ++ +    G +PLH+
Sbjct:   269 LLLDRGAKI-DAKTRDGLTPLHCGARSGHEQVVEMLLDRSA---PILSK-TKNGLSPLHM 323

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010650 "positive regulation of cell communication by electrical coupling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016328 "lateral plasma membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=IMP

GO:0030018 "Z disc" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0033268 "node of Ranvier" evidence=ISO;IDA

GO:0033270 "paranode region of axon" evidence=IDA

GO:0034112 "positive regulation of homotypic cell-cell adhesion" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043194 "axon initial segment" evidence=ISO;IDA

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0045760 "positive regulation of action potential" evidence=TAS

GO:0050808 "synapse organization" evidence=IMP

GO:0071709 "membrane assembly" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO;IDA;IMP

GO:0072660 "maintenance of protein location in plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;IMP

GO:0090314 "positive regulation of protein targeting to membrane" evidence=ISO

UNIPROTKB|K7GLA8 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 89/300 (29%), Positives = 130/300 (43%)

Query:    70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
             N  G   LHLA+K GH E+V  L++R           E+ V+           + NTALH
Sbjct:    33 NQNGLNALHLASKEGHVEVVSELLQR-----------EASVDA-------ATKKGNTALH 74

Query:   130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF-- 187
              A   G  +VVK+L          + N G TPLYMAA+ EN  ++++ LL+N  S S   
Sbjct:    75 IASLAGQAEVVKVLVTNGANVNAQSQN-GFTPLYMAAQ-ENHLEVVKFLLDNGASQSLAT 132

Query:   188 -D----MVLALLENSTSVS----HEGPNGKT---ALHAAAMRSFAVDTAXXXXXXXXXXX 235
              D    + +AL +    V          GK    ALH AA +    DT            
Sbjct:   133 EDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKD---DTKAAALLLQNDNN 189

Query:   236 XXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
                  + G+TP+H AA+YGN     LLL    +    A  D  +T LH+A+ +G+A  V+
Sbjct:   190 ADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARND--ITPLHVASKRGNANMVK 247

Query:   296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
              ++    K  +     G   LH    S H   +  LL+    A  ++ +    G +PLH+
Sbjct:   248 LLLDRGAKI-DAKTRDGLTPLHCGARSGHEQVVEMLLDR---AAPILSK-TKNGLSPLHM 302

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-060621-1 ank3a "ankyrin 3a" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 103/349 (29%), Positives = 146/349 (41%)

Query:    70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
             N  G   LHLA+K GH E+V  L+   KL    D   + G               NTALH
Sbjct:    34 NQNGLNALHLASKEGHVEVVAELL---KLGANVDAATKKG---------------NTALH 75

Query:   130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF-- 187
              A   G  +VV+ L          + N G TPLYMAA+ EN  D++R LLEN +S S   
Sbjct:    76 IASLAGQTEVVRELVTNGANVNAQSQN-GFTPLYMAAQ-ENHLDVVRFLLENNSSQSIAT 133

Query:   188 -D----MVLALLENSTSVS----HEGPNGKT---ALHAAAMRSFAVDTAXXXXXXXXXXX 235
              D    + +AL +    V          GK    ALH AA +    DT            
Sbjct:   134 EDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKD---DTKSAALLLQNDHN 190

Query:   236 XXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
                  + G+TP+H AA+YGN     LLL    +   +A  D  +T LH+A+ +G+   V+
Sbjct:   191 ADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFMARND--ITPLHVASKRGNGNMVK 248

Query:   296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
              ++    K  E     G   LH    S H   +  LL+       ++ +    G +PLH+
Sbjct:   249 LLLDRGSKI-EAKTKDGLTPLHCGARSGHEQVVEMLLDRGA---PILSK-TKNGLSPLHM 303

Query:   356 LAAVRPKEFHDV-MNRSTQANYDAVNKQNVSVRHVFNY-G-YTELKVII 401
               A +    + V +     A  D V    ++  HV  + G Y   KVI+
Sbjct:   304 --ATQGDHLNCVQLLLQHNAPVDDVTNDYLTALHVAAHCGHYKVAKVIV 350

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PJ90 ANK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 89/300 (29%), Positives = 130/300 (43%)

Query:    70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
             N  G   LHLA+K GH E+V  L++R           E+ V+           + NTALH
Sbjct:    71 NQNGLNALHLASKEGHVEVVSELLQR-----------EANVDA-------ATKKGNTALH 112

Query:   130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF-- 187
              A   G  +VVK+L          + N G TPLYMAA+ EN  ++++ LL+N  S S   
Sbjct:   113 IASLAGQAEVVKVLVTNGANVNAQSQN-GFTPLYMAAQ-ENHLEVVKFLLDNGASQSLAT 170

Query:   188 -D----MVLALLENSTSVS----HEGPNGKT---ALHAAAMRSFAVDTAXXXXXXXXXXX 235
              D    + +AL +    V          GK    ALH AA +    DT            
Sbjct:   171 EDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKD---DTKAAALLLQNDNN 227

Query:   236 XXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
                  + G+TP+H AA+YGN     LLL    +    A  D  +T LH+A+ +G+A  V+
Sbjct:   228 ADIESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARND--ITPLHVASKRGNANMVK 285

Query:   296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
              ++    K  +     G   LH    S H   +  LL+    A  ++ +    G +PLH+
Sbjct:   286 LLLDRGAKI-DAKTRDGLTPLHCGARSGHEQVVEMLLDR---AAPILSK-TKNGLSPLHM 340

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-041010-165 ank2b "ankyrin 2b, neuronal" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 95/304 (31%), Positives = 132/304 (43%)

Query:    70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
             N  G   LHLAAK GH ++V+ L+ R       D   + G               NTALH
Sbjct:    62 NQNGLNALHLAAKEGHVDLVQELLGRGSSV---DSATKKG---------------NTALH 103

Query:   130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN---RTSAS 186
              A   G  DVVKIL++        + N G TPLYMA++ EN  D++R LLEN   ++ A+
Sbjct:   104 IASLAGQGDVVKILSKRGANINAQSQN-GFTPLYMASQ-ENHLDVVRYLLENGGNQSIAT 161

Query:   187 FD----MVLALLENSTSVS----HEGPNGKT---ALHAAAMRSFAVDTAXXXXXXXXXXX 235
              D    + +AL +    V          GK    ALH AA +    DT            
Sbjct:   162 EDGFTPLAIALQQGHNQVVSILLENDTKGKVRLPALHIAARKD---DTKSAALLLQNDHN 218

Query:   236 XXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
                  + G+TP+H AA+YGN     LLL    +    A     +T LH+A+ +G+   V 
Sbjct:   219 ADVQSKSGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARNG--ITPLHVASKRGNTNMVH 276

Query:   296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENN-P-LARSLIDEGDAEGNTPL 353
              ++    +  +     G   LH A  S H   +  LLE   P LAR+        G +PL
Sbjct:   277 LLLDRGAQI-DAKTRDGLTPLHCAARSGHDTAVELLLERGAPMLART------KNGLSPL 329

Query:   354 HVLA 357
             H+ A
Sbjct:   330 HMAA 333

GO:0006508 "proteolysis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q12955 ANK3 "Ankyrin-3" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 89/300 (29%), Positives = 130/300 (43%)

Query:    70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
             N  G   LHLA+K GH E+V  L++R           E+ V+           + NTALH
Sbjct:    71 NQNGLNALHLASKEGHVEVVSELLQR-----------EANVDA-------ATKKGNTALH 112

Query:   130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF-- 187
              A   G  +VVK+L          + N G TPLYMAA+ EN  ++++ LL+N  S S   
Sbjct:   113 IASLAGQAEVVKVLVTNGANVNAQSQN-GFTPLYMAAQ-ENHLEVVKFLLDNGASQSLAT 170

Query:   188 -D----MVLALLENSTSVS----HEGPNGKT---ALHAAAMRSFAVDTAXXXXXXXXXXX 235
              D    + +AL +    V          GK    ALH AA +    DT            
Sbjct:   171 EDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKD---DTKAAALLLQNDNN 227

Query:   236 XXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
                  + G+TP+H AA+YGN     LLL    +    A  D  +T LH+A+ +G+A  V+
Sbjct:   228 ADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARND--ITPLHVASKRGNANMVK 285

Query:   296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
              ++    K  +     G   LH    S H   +  LL+    A  ++ +    G +PLH+
Sbjct:   286 LLLDRGAKI-DAKTRDGLTPLHCGARSGHEQVVEMLLDR---AAPILSK-TKNGLSPLHM 340

GO:0007165 "signal transduction" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0045184 "establishment of protein localization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042383 "sarcolemma" evidence=IDA

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0043034 "costamere" evidence=TAS

GO:0072659 "protein localization to plasma membrane" evidence=IGI;IMP

GO:1900827 "positive regulation of membrane depolarization involved in regulation of cardiac muscle cell action potential" evidence=ISS

GO:0010765 "positive regulation of sodium ion transport" evidence=ISS

GO:0045838 "positive regulation of membrane potential" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:2000651 "positive regulation of sodium ion transmembrane transporter activity" evidence=ISS

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0005923 "tight junction" evidence=IDA

GO:0071709 "membrane assembly" evidence=IMP

GO:0000281 "cytokinesis after mitosis" evidence=IMP

GO:0007009 "plasma membrane organization" evidence=IMP

GO:0072660 "maintenance of protein location in plasma membrane" evidence=IGI

GO:0005200 "structural constituent of cytoskeleton" evidence=IMP

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0030507 "spectrin binding" evidence=ISS

GO:0044325 "ion channel binding" evidence=ISS

GO:0045296 "cadherin binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0014704 "intercalated disc" evidence=ISS

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISS

GO:0030315 "T-tubule" evidence=ISS

GO:0030674 "protein binding, bridging" evidence=ISS

GO:0043266 "regulation of potassium ion transport" evidence=ISS

GO:0043194 "axon initial segment" evidence=ISS

GO:0033268 "node of Ranvier" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0019228 "regulation of action potential in neuron" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	401
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	3e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 35/152 (23%)

Query: 68  QVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
             +  G TPLHLAA  GH E+V++L+E                      +   +N+  T 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGA------------------DVNAKDNDGRTP 43

Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
           LH A   G++++VK+L  +      + +  G TPL++AA   N                 
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGA-DVNARDKDGNTPLHLAARNGN----------------L 86

Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSF 219
           D+V  LL++   V+    +G+T LH AA    
Sbjct: 87  DVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.9 bits (200), Expect = 1e-18
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 21/144 (14%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA 214
           +  G+TPL++AA   +                 ++V  LLEN   V+ +  +G+T LH A
Sbjct: 4   DEDGRTPLHLAASNGH----------------LEVVKLLLENGADVNAKDNDGRTPLHLA 47

Query: 215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD 274
           A     ++    KLL +K   +   D+ G TP+H AA  GN   V LLL+      N  D
Sbjct: 48  AKNG-HLEIV--KLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARD 103

Query: 275 KDRKMTALHLAAGKGDARTVERII 298
           KD + T LHLAA  G    V+ ++
Sbjct: 104 KDGR-TPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
             D+ G TP+H AA  G+   V LLLE   +  N  D D   T LHLAA  G    V+ +
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDG-RTPLHLAAKNGHLEIVKLL 59

Query: 298 ISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
           +          D  G   LH A  + ++  ++ LL++     + ++  D +G TPLH+
Sbjct: 60  LE-KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG----ADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 25/136 (18%)

Query: 35  NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
            T LH+   +        + V+ +LE   A +   +  G TPLHLAAK GH EIV++L+E
Sbjct: 8   RTPLHLAASNG-----HLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 95  RAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSA 154
           +                     +   + + NT LH A   GN+DVVK+L +       + 
Sbjct: 62  KGAD------------------VNARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNAR 102

Query: 155 NNYGKTPLYMAAEYEN 170
           +  G+TPL++AA+  +
Sbjct: 103 DKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           +G+T LH AA         + KLL +    +   D  G TP+H AA  G+   V LLLE 
Sbjct: 6   DGRTPLHLAASNG---HLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 266 DQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHV 325
                N  DKD   T LHLAA  G+   V+ ++  +       D  G   LH A  + H+
Sbjct: 63  GADV-NARDKD-GNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHL 119

Query: 326 GQLRNLL 332
             ++ LL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 40/144 (27%)

Query: 8   AASAGNSEPFKDMERDVIERLLTAKAK--------NTILHINIISSERENVSTKFVEEIL 59
           AAS G+         +V++ LL   A          T LH+   +        + V+ +L
Sbjct: 14  AASNGH--------LEVVKLLLENGADVNAKDNDGRTPLHLAAKNG-----HLEIVKLLL 60

Query: 60  EKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRM 119
           EK  A +   +  G+TPLHLAA+ G+ ++V++L++                      +  
Sbjct: 61  EKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKH------------------GADVNA 101

Query: 120 VNNEKNTALHEAVSQGNVDVVKIL 143
            + +  T LH A   G+++VVK+L
Sbjct: 102 RDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 21/93 (22%)

Query: 51  STKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGV 110
           + + V+ +LEK   + L      DT LHLAA+ G+ EIV++L+E              G 
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEH-------------GA 52

Query: 111 EPFRQMIRMVNNEKNTALHEAVSQGNVDVVKIL 143
           +     +   + + NTALH A   GN+++VK+L
Sbjct: 53  D-----VNAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 22/105 (20%)

Query: 77  LHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGN 136
           LHLAAK G+ E+V++L+E+                       +   + +TALH A   GN
Sbjct: 1   LHLAAKNGNLELVKLLLEK--------------------GADVNLGDTDTALHLAARNGN 40

Query: 137 VDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN 181
           +++VK+L         + +  G T L++AA      ++++ LLE+
Sbjct: 41  LEIVKLLLEHGAD-VNAKDKDGNTALHLAARN-GNLEIVKLLLEH 83

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 63/253 (24%), Positives = 96/253 (37%), Gaps = 43/253 (16%)

Query: 137 VDVVKILTREDPGYPYSANNYGKTPL--YMAAEYENRSDMLRGLLEN------------- 181
           V+ V+ L        +    YGKTPL  Y+    E   D++R LLE              
Sbjct: 27  VEEVRRLLAAGADVNF-RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 182 ------RTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL 235
                   + + D++  L++    V+ +   G+T LH   +  F ++  + +LL +K   
Sbjct: 86  PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY-LSGFNINPKVIRLLLRKGAD 144

Query: 236 IKETDQYGWTPIHYAAYYGNYR----TVNLLLETDQSASNIADKDRKMTALH--LAAGKG 289
           +   D YG TP+       +       + LL+  D  A   A  DR  + LH  L + K 
Sbjct: 145 VNALDLYGMTPLA--VLLKSRNANVELLRLLI--DAGADVYAVDDRFRSLLHHHLQSFKP 200

Query: 290 DARTVERIISGNPKCYELVDNRGCNF-LHYAMV--SFHVGQLRNLLENNPLARSLIDEGD 346
            AR V  +I     C     +   N  LH      S     +  LL         I+  +
Sbjct: 201 RARIVRELIRAG--CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG----ISINARN 254

Query: 347 AEGNTPLHVLAAV 359
             G TPLH  AAV
Sbjct: 255 RYGQTPLH-YAAV 266

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 59/294 (20%), Positives = 115/294 (39%), Gaps = 57/294 (19%)

Query: 23  DVIERLLTAKA--------KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD 74
           D++  LL A A          T LH+ + ++   +V      ++L K  A +   +  G 
Sbjct: 64  DIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVI-----KLLIKAGADVNAKDKVGR 118

Query: 75  TPLH--LAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           TPLH  L+    + +++R+L+ +             G +        ++    T L   +
Sbjct: 119 TPLHVYLSGFNINPKVIRLLLRK-------------GADV-----NALDLYGMTPLAVLL 160

Query: 133 SQGNVDV--VKILTREDPGYPYSANNYGKTPL-YMAAEYENRSDMLRGLLENRTSASFDM 189
              N +V  +++L        Y+ ++  ++ L +    ++ R+ ++R L+      +   
Sbjct: 161 KSRNANVELLRLLIDAG-ADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATD 219

Query: 190 VLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL-IKETDQYGWTPIH 248
           +L               G T LH+ A  S    + +  LL     + I   ++YG TP+H
Sbjct: 220 ML---------------GNTPLHSMATGSSCKRSLVLPLLIA--GISINARNRYGQTPLH 262

Query: 249 YAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNP 302
           YAA + N R    L+      + ++      T L L     + R V   ++ NP
Sbjct: 263 YAAVFNNPRACRRLIALGADINAVSSDGN--TPLSLMVRNNNGRAVRAALAKNP 314

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
           + ++V  LLE    V+    +  TALH AA     ++    KLL +    +   D+ G T
Sbjct: 9   NLELVKLLLEKGADVNL--GDTDTALHLAARNGN-LEIV--KLLLEHGADVNAKDKDGNT 63

Query: 246 PIHYAAYYGNYRTVNLLLE 264
            +H AA  GN   V LLLE
Sbjct: 64  ALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 247 IHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYE 306
           +H AA  GN   V LLLE         +     TALHLAA  G+   V+ ++  +     
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV----NLGDTDTALHLAARNGNLEIVKLLLE-HGADVN 55

Query: 307 LVDNRGCNFLHYAMVSFHVGQLRNLLENNP 336
             D  G   LH A  + ++  ++ LLE+  
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 36/184 (19%)

Query: 136 NVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLE 195
             ++VK+L  E      + +N G TPL  A                + S S+ +V  LL+
Sbjct: 85  VKEIVKLLL-EYGANVNAPDNNGITPLLYAIS--------------KKSNSYSIVEYLLD 129

Query: 196 NSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN----------------LIKET 239
           N  +V+ +  +G+  LH     S  +D  + KLL  K                   I   
Sbjct: 130 NGANVNIKNSDGENLLHLYL-ESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIK 188

Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERII 298
           D YG+TP+HYA Y  N   V  LL  D  A+ N+ +K    T LH+A    +    + ++
Sbjct: 189 DVYGFTPLHYAVYNNNPEFVKYLL--DLGANPNLVNKYGD-TPLHIAILNNNKEIFKLLL 245

Query: 299 SGNP 302
           +  P
Sbjct: 246 NNGP 249

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 59/282 (20%), Positives = 90/282 (31%), Gaps = 68/282 (24%)

Query: 162 LYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAV 221
               +        L   L N ++ + + V  LL     V+  G  GKT LH     S   
Sbjct: 2   EEDESVDIIMEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEK 61

Query: 222 DTALPKLLEKKKNLIKETDQYGWTPIHYAAYYG--------------------------- 254
              + +LL +    +   ++ G+TP+H   Y                             
Sbjct: 62  VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121

Query: 255 ---------NYRTVNLLLE--TDQSASNIADKDRKMTALH--LAAGKGDARTVERIISGN 301
                    N + + LLL    D +A ++      MT L   L +   +   +  +I   
Sbjct: 122 HVYLSGFNINPKVIRLLLRKGADVNALDLYG----MTPLAVLLKSRNANVELLRLLIDAG 177

Query: 302 PKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEG------DAEGNTPLHV 355
              Y  VD+R  + LH+ + SF             + R LI  G      D  GNTPLH 
Sbjct: 178 ADVYA-VDDRFRSLLHHHLQSFK--------PRARIVRELIRAGCDPAATDMLGNTPLHS 228

Query: 356 LAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTEL 397
           +A            RS            +S+     YG T L
Sbjct: 229 MAT------GSSCKRSLVLPLLI---AGISINARNRYGQTPL 261

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 18/71 (25%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G T LH AA  G  E+V+ L+E              GV+  R      + + NTALH A 
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-------------KGVDINRT-----DEDGNTALHIAA 42

Query: 133 SQGNVDVVKIL 143
             GN++V+K+L
Sbjct: 43  ENGNLEVLKLL 53

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 64/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)

Query: 122 NEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN 181
           +E  T L +A+  G+  +V++  +      +  N     PL  A +     D+++ L++N
Sbjct: 33  DETTTPLIDAIRSGDAKIVELFIKHGADINH-INTKIPHPLLTAIKIGA-HDIIKLLIDN 90

Query: 182 RTSASF--------DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK 233
               S         DM+  +L+    V+ +    KT LH A  +    D    K+L +  
Sbjct: 91  GVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKG---DLESIKMLFEYG 147

Query: 234 NLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDART 293
             +   D  G  PIH A  +  +  + LLLE    A N+ D + + + LH AA  GD   
Sbjct: 148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGE-SPLHNAAEYGDYAC 205

Query: 294 VERIISGNP----KCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEG 349
           ++ +I        KC       G   LH A++  H      LL NN    + I++ D +G
Sbjct: 206 IKLLIDHGNHIMNKC-----KNGFTPLHNAII--HNRSAIELLINN----ASINDQDIDG 254

Query: 350 NTPLH 354
           +TPLH
Sbjct: 255 STPLH 259

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 19/90 (21%)

Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
           LH A   GN+++VK+L   + G   +  +   T L++AA   N                 
Sbjct: 1   LHLAAKNGNLELVKLLL--EKGADVNLGDTD-TALHLAARNGN----------------L 41

Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMR 217
           ++V  LLE+   V+ +  +G TALH AA  
Sbjct: 42  EIVKLLLEHGADVNAKDKDGNTALHLAARN 71

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 20/97 (20%)

Query: 5  FFKAASAGNSEPFKDMERDVIERLLTAKA------KNTILHINIISSERENVSTKFVEEI 58
             AA  GN E        +++ LL   A       +T LH+   ++   N+  + V+ +
Sbjct: 1  LHLAAKNGNLE--------LVKLLLEKGADVNLGDTDTALHL---AARNGNL--EIVKLL 47

Query: 59 LEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIER 95
          LE    +  + +  G+T LHLAA+ G+ EIV++L+E 
Sbjct: 48 LEHGADVNAK-DKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 243 GWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARTVERII 298
           G T +H AA  G    V  LLE      +I   D    TALH+AA  G+   ++ ++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKG---VDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 62/260 (23%), Positives = 103/260 (39%), Gaps = 55/260 (21%)

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           TA+H+A+    +D+V+ + +++P   Y  ++   + L+      N  D++  L     + 
Sbjct: 43  TAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISL-----TL 97

Query: 186 SFDMVL------------ALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK 233
             D++L             L E    +  E  +G    +     S      + + +++ +
Sbjct: 98  DCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDE 157

Query: 234 NLIKET-----------DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTAL 282
            LI E            D Y  TPIHYAA  GN + VNLLL      + IA  D  ++ L
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDD--LSVL 215

Query: 283 HLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLI 342
             A    +  T++ II          DNR       + ++ +   L   + N  L  SL+
Sbjct: 216 ECAVDSKNIDTIKAII----------DNR-------SNINKNDLSLLKAIRNEDLETSLL 258

Query: 343 --DEG------DAEGNTPLH 354
             D G      D   NTPLH
Sbjct: 259 LYDAGFSVNSIDDCKNTPLH 278

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 9e-06
 Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 60/237 (25%)

Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIER------------------- 95
           + E+  K  A +  +N K   PL  A K G  +I+++LI+                    
Sbjct: 50  IVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT 109

Query: 96  ------------AKL-------AQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGN 136
                       A+L        ++GD E    +  +   + + ++     +H A+    
Sbjct: 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF 169

Query: 137 VDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN 196
            D++K+L  E   Y    +N G++PL+ AAEY                  +  +  L+++
Sbjct: 170 FDIIKLLL-EKGAYANVKDNNGESPLHNAAEY----------------GDYACIKLLIDH 212

Query: 197 STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYY 253
              + ++  NG T LH A + +    +A+  L+      I + D  G TP+H+A   
Sbjct: 213 GNHIMNKCKNGFTPLHNAIIHN---RSAIELLINNAS--INDQDIDGSTPLHHAINP 264

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 209 TALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLL 263
           TALH AA+    ++     LLEK  + I  TD+ G T +H AA  GN   + LLL
Sbjct: 3   TALHKAAISG-RLELVK-YLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 60/252 (23%), Positives = 94/252 (37%), Gaps = 53/252 (21%)

Query: 16  PFKDMERDVIERLLTAKAK--------NTILHINIISSERENVSTKFVEEILEKCPALLL 67
           P   +E+D+I+ +L              T LH  I   + E++   F      +  A + 
Sbjct: 98  PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLF------EYGADVN 151

Query: 68  QVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
             +  G  P+H+A K   F+I+++L+E+   A                   + +N   + 
Sbjct: 152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN------------------VKDNNGESP 193

Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
           LH A   G+   +K+L            N G TPL+ A  + NRS               
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHIMNKCKN-GFTPLHNAIIH-NRS--------------- 236

Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPI 247
              + LL N+ S++ +  +G T LH A      +D     L  K    IK  D  G  PI
Sbjct: 237 --AIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIK--DNKGENPI 292

Query: 248 HYAAYYGNYRTV 259
             A  Y N   V
Sbjct: 293 DTAFKYINKDPV 304

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTP 246
            + +  L E    V+ E  NG   +H A   +F     + KLL +K       D  G +P
Sbjct: 137 LESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF---FDIIKLLLEKGAYANVKDNNGESP 193

Query: 247 IHYAAYYGNYRTVNLLLETDQSASNIADK-DRKMTALHLAAGKGDARTVERIISGNPKCY 305
           +H AA YG+Y  + LL++     ++I +K     T LH A    +   +E +I  N    
Sbjct: 194 LHNAAEYGDYACIKLLID---HGNHIMNKCKNGFTPLHNAIIH-NRSAIELLI--NNASI 247

Query: 306 ELVDNRGCNFLHYAM 320
              D  G   LH+A+
Sbjct: 248 NDQDIDGSTPLHHAI 262

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 20/148 (13%)

Query: 5   FFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEK--C 62
              AAS G+ +  K +     +        +T LH+  ++      + +  + +LE    
Sbjct: 77  LHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD 136

Query: 63  PALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNN 122
             +    +  G+TPLH AA  G  +IV +L+E          +P S            N+
Sbjct: 137 LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG-------ADPNS-----------RNS 178

Query: 123 EKNTALHEAVSQGNVDVVKILTREDPGY 150
              TAL  A   G +++VK+L  +    
Sbjct: 179 YGVTALDPAAKNGRIELVKLLLDKGLHL 206

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
             LH A S+G+  +VK+L         + +  G TPL++A         L G        
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGA-DVNAKDADGDTPLHLA--------ALNGNPPEGNIE 125

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
              ++L    +    +    +G T LH AA+   A    +  LLE   +     + YG T
Sbjct: 126 VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA--DIVELLLEAGAD-PNSRNSYGVT 182

Query: 246 PIHYAAYYGNYRTVNLLLE 264
            +  AA  G    V LLL+
Sbjct: 183 ALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 14/24 (58%), Positives = 20/24 (83%)

Query: 72 KGDTPLHLAAKFGHFEIVRVLIER 95
           G+TPLHLAA+ GH E+V++L+E 
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 14/79 (17%)

Query: 23  DVIERLLTAKA--------KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD 74
           ++++ LL   A         NT LH+   +      +   V+ +L+   A +   +  G 
Sbjct: 54  EIVKLLLEKGADVNARDKDGNTPLHLAARNG-----NLDVVKLLLKHG-ADVNARDKDGR 107

Query: 75  TPLHLAAKFGHFEIVRVLI 93
           TPLHLAAK GH E+V++L+
Sbjct: 108 TPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 37/193 (19%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G +P+ LA KF   E +++L++   +      + ES                   LH+AV
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES------------------ELHDAV 76

Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA 192
            +G+V  V+ L              G TPL++A   +   D+++ L+             
Sbjct: 77  EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKK-LDIMKLLIARGAD-------- 127

Query: 193 LLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAY 252
                  + +   +  + LH A M     D    +LL   K  +   D  G TP+  A  
Sbjct: 128 -----PDIPNT--DKFSPLHLAVMMG---DIKGIELLIDHKACLDIEDCCGCTPLIIAMA 177

Query: 253 YGNYRTVNLLLET 265
            G+     +LL++
Sbjct: 178 KGDIAICKMLLDS 190

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLI 93
          V+ +LEK    + + +  G+T LH+AA+ G+ E++++L+
Sbjct: 17 VKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 75/288 (26%), Positives = 118/288 (40%), Gaps = 44/288 (15%)

Query: 32  KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEI 88
           K   +I ++ +I    +       E +LE        VNAK     TP+H AA+ G+ ++
Sbjct: 138 KINESIEYMKLIKERIQQDELLIAEMLLEGG----ADVNAKDIYCITPIHYAAERGNAKM 193

Query: 89  VRVLIERAK----LAQRGDEEPESGV-----EPFRQMI--RMVNNEKNTALHEAVSQGNV 137
           V +L+        +A       E  V     +  + +I  R   N+ + +L +A+   N 
Sbjct: 194 VNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIR--NE 251

Query: 138 DVVKILTREDPGYPY-SANNYGKTPLYMAAEYENRSDMLRGLLE-----NRTSASFDMVL 191
           D+   L   D G+   S ++   TPL+ A++  + S ++  LLE     N  +   +  L
Sbjct: 252 DLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Query: 192 ALL-------ENSTSVSHEGPNGK-------TALHAAAMRSFAVDTALPKLLEKKKNLIK 237
            L+       EN  ++   G +         T LH A+      D  +  LLE   N + 
Sbjct: 312 YLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVI-TLLELGAN-VN 369

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLA 285
             D    TPIHYAA   N   +N LL  D  A   A   +  TALH A
Sbjct: 370 ARDYCDKTPIHYAAVRNNVVIINTLL--DYGADIEALSQKIGTALHFA 415

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 206 NGKTALHAAAMR---SFAVDTALPKLLEKKKNL--IKETDQYGWTPIHYAAYYGNYRTVN 260
           +G T LH AA+              LLE   +L      D+ G TP+H+AA  G+   V 
Sbjct: 105 DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 261 LLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNR 311
           LLLE    A   +     +TAL  AA  G    V+ ++        L  N 
Sbjct: 165 LLLE--AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNL 213

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 58 ILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIER 95
          +LE  P  L   +  G+TPLHLAAK+G  E+V+ L++ 
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP 38

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 228 LLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLA 285
           LLE     +  TD  G TP+H AA YG    V  LL+      N+ D D   TAL LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 43/181 (23%)

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
           ETD  G  P+H A+   N R V +LL T  +  N  DK  K T L+  +G  D   +ERI
Sbjct: 67  ETDDDGNYPLHIASKINNNRIVAMLL-THGADPNACDKQHK-TPLYYLSGTDD-EVIERI 123

Query: 298 ---ISGNPKCYELVDNRGCN------------FLHYAMVSFHVGQL---------RNLLE 333
              +    K    VD  GC             F     + F    +         R+L+ 
Sbjct: 124 NLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMS 183

Query: 334 NNPLARSLI---------DEGDAEGNTPLHVLAA--VRPKEFHDVMNRSTQANYDAVNKQ 382
           +NP A ++           + D +GNTPLH++ +  V+  +  +++  ST      VNKQ
Sbjct: 184 DNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTD-----VNKQ 238

Query: 383 N 383
           N
Sbjct: 239 N 239

Length = 446

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 19/113 (16%)

Query: 72  KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
           KG+T LH A +     +  +L+               G         + +   N+ LH A
Sbjct: 167 KGNTALHYATENKDQRLTELLLSY-------------GANV-----NIPDKTNNSPLHHA 208

Query: 132 VSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
           V   N  +V IL   +     + +  G TPL+++  Y    D+L+ LLE+   
Sbjct: 209 VKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD 260

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 242 YGWTPIHYAAYYGNYRTVNLLLE 264
            G TP+H AA  G+   V LLLE
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 24/209 (11%)

Query: 127 ALHEAVSQGNVDVVKILTREDPGY-PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           AL +A+  G +D+ + L   D G  P      G +P+ +A ++ +               
Sbjct: 5   ALCDAILFGELDIARRLL--DIGINPNFEIYDGISPIKLAMKFRDS-------------- 48

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
             + +  L+++      + P+ ++ LH A         A+ +LL+  K       + G T
Sbjct: 49  --EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK--AVEELLDLGKFADDVFYKDGMT 104

Query: 246 PIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCY 305
           P+H A        + LL+    +  +I + D+  + LHLA   GD + +E +I  +  C 
Sbjct: 105 PLHLATILKKLDIMKLLIAR-GADPDIPNTDK-FSPLHLAVMMGDIKGIELLID-HKACL 161

Query: 306 ELVDNRGCNFLHYAMVSFHVGQLRNLLEN 334
           ++ D  GC  L  AM    +   + LL++
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 22/219 (10%)

Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKE--TDQYGWT 245
           D++L  L    S+    P+ K       + +     +L +LL K          D  G  
Sbjct: 17  DLLLVALLLLLSLDLSNPSDKKLNLYLEL-ALLPAASLSELLLKLIVDRHLAARDLDGRL 75

Query: 246 PIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA-----GKGDARTVERIISG 300
           P+H AA  G+ + V LLL     A   A      T LHLAA      +G+    + ++  
Sbjct: 76  PLHSAASKGDDKIVKLLL--ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 301 NPKCY--ELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                   L D  G   LH+A ++     +  LLE    A +  +  ++ G T L   A 
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE----AGADPNSRNSYGVTALDPAAK 189

Query: 359 VRPKEFHDVMNR------STQANYDAVNKQNVSVRHVFN 391
               E   ++          + N + V   NVS R++ N
Sbjct: 190 NGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILN 228

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 19/99 (19%)

Query: 72  KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
            G TPLHLA      +I+++LI R             G +P      + N +K + LH A
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIAR-------------GADP-----DIPNTDKFSPLHLA 142

Query: 132 VSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYEN 170
           V  G++  +++L           +  G TPL +A    +
Sbjct: 143 VMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKGD 180

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 12/24 (50%), Positives = 20/24 (83%)

Query: 72 KGDTPLHLAAKFGHFEIVRVLIER 95
           G TPLHLAA+ G+ E+V++L+++
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDK 24

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/24 (54%), Positives = 20/24 (83%)

Query: 72 KGDTPLHLAAKFGHFEIVRVLIER 95
           G+TPLHLAA+ G+ E+V++L+E 
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEH 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 125 NTALHEAVSQGNVDVVKIL--TREDPGYPYSANNYGKTPLYMAAEYEN 170
            TALH+A   G +++VK L     D       +  G T L++AAE  N
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRT---DEDGNTALHIAAENGN 46

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.96
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.41
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.4
PF13606	30	Ank_3: Ankyrin repeat	98.97
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.89
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.87
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.87
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.84
PF13606	30	Ank_3: Ankyrin repeat	98.84
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.77
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.77
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.72
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.69
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.68
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.67
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.49
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.42
KOG0522	560	consensus Ankyrin repeat protein [General function	98.42
KOG0511	516	consensus Ankyrin repeat protein [General function	98.33
KOG2384	223	consensus Major histocompatibility complex protein	98.28
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.24
KOG2384	223	consensus Major histocompatibility complex protein	98.16
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.15
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.07
KOG0511	516	consensus Ankyrin repeat protein [General function	98.06
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.97
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.85
KOG2505	591	consensus Ankyrin repeat protein [General function	97.4
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.15
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.97
KOG2505	591	consensus Ankyrin repeat protein [General function	96.65
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.41
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.25
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.2
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.82
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.08
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.72

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4e-53  Score=397.61  Aligned_cols=342  Identities=20%  Similarity=0.225  Sum_probs=285.2

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHH-HHHHhhcCCCeeEEeecc------------------------------------
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIE-RLLTAKAKNTILHINIIS------------------------------------   44 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~-~~~~~~~g~t~L~~a~~~------------------------------------   44 (401)
                      .||||.|+..|+.++|++|+++.++ ....+..|+||||+|+..                                    
T Consensus        42 ~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (682)
T PHA02876         42 FTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEAC  121 (682)
T ss_pred             chHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHH
Confidence            4899999999999999999998765 345667799999988311                                    


Q ss_pred             --------------------------------hhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHH
Q 015738           45 --------------------------------SERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVL   92 (401)
Q Consensus        45 --------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   92 (401)
                                                      ..++.+++++|++    .|++++.+|..|.||||+||..|+.++|++|
T Consensus       122 ~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~----~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~L  197 (682)
T PHA02876        122 IHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE----GGADVNAKDIYCITPIHYAAERGNAKMVNLL  197 (682)
T ss_pred             HHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence                                            2345666667766    8999999999999999999999999999999


Q ss_pred             HHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCC----------------------
Q 015738           93 IERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGY----------------------  150 (401)
Q Consensus        93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~----------------------  150 (401)
                      +++|+++                  +..+..|.||||+|+..++.+++++|++.++..                      
T Consensus       198 L~~Gad~------------------n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~L  259 (682)
T PHA02876        198 LSYGADV------------------NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLL  259 (682)
T ss_pred             HHCCCCc------------------CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHH
Confidence            9999985                  445566777777777777777776666554332                      


Q ss_pred             ------CCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCC-HHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccc-c
Q 015738          151 ------PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSAS-FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAV-D  222 (401)
Q Consensus       151 ------~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~-~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~-~  222 (401)
                            ....+..|.||||+|+..+                + .++++.|++.|++++..+..|.||||+|+..  +. .
T Consensus       260 l~~g~~vn~~d~~g~TpLh~Aa~~~----------------~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~--g~~~  321 (682)
T PHA02876        260 YDAGFSVNSIDDCKNTPLHHASQAP----------------SLSRLVPKLLERGADVNAKNIKGETPLYLMAKN--GYDT  321 (682)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHhCC----------------CHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh--CCCH
Confidence                  2355677999999999732                4 3689999999999999999999999999988  53 5


Q ss_pred             chHHHHHHhhcccccccccCCCcHHHHHHHc-CCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcC
Q 015738          223 TALPKLLEKKKNLIKETDQYGWTPIHYAAYY-GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGN  301 (401)
Q Consensus       223 ~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~  301 (401)
                      +.++.++.. +.+++..+..|.||||+|+.. ++.+++++|++.|+++ +..+. .|.||||+|+..++.+++++|++.|
T Consensus       322 ~~v~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~-~G~TpLh~Aa~~~~~~iv~~Ll~~g  398 (682)
T PHA02876        322 ENIRTLIML-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDY-CDKTPIHYAAVRNNVVIINTLLDYG  398 (682)
T ss_pred             HHHHHHHHc-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCC-CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            556555554 455888999999999999985 5789999999999887 44444 7999999999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHhCC-hhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhC-ChhHHHHHHhhcCCChhhh
Q 015738          302 PKCYELVDNRGCNFLHYAMVSFH-VGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVR-PKEFHDVMNRSTQANYDAV  379 (401)
Q Consensus       302 ~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~  379 (401)
                      ++ ++..+..|.||||+|+..++ ..+++.|++    .|+++|.+|..|+||||+|+..+ +.+++++|+.. |+|++.+
T Consensus       399 ad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~----~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~-Gad~n~~  472 (682)
T PHA02876        399 AD-IEALSQKIGTALHFALCGTNPYMSVKTLID----RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN-GADVNAI  472 (682)
T ss_pred             CC-ccccCCCCCchHHHHHHcCCHHHHHHHHHh----CCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC-CCCCCCC
Confidence            88 68889999999999998665 567899999    89999999999999999999877 68999999966 9999999


Q ss_pred             hccCcceeeeeec
Q 015738          380 NKQNVSVRHVFNY  392 (401)
Q Consensus       380 ~~~g~t~l~~a~~  392 (401)
                      |..|.||+++|..
T Consensus       473 d~~g~tpl~~a~~  485 (682)
T PHA02876        473 NIQNQYPLLIALE  485 (682)
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999843

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.3e-50  Score=357.36  Aligned_cols=214  Identities=16%  Similarity=0.142  Sum_probs=116.0

Q ss_pred             CCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcC--CHHHHH
Q 015738           13 NSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG--HFEIVR   90 (401)
Q Consensus        13 ~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~   90 (401)
                      +.++|++|+++|++.+..+..|.||||+|  +..|+.+++++|++    .|++++.+|..|.||||+|+..+  ..++++
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~A--a~~g~~eiv~lLL~----~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~  124 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIA--SKINNNRIVAMLLT----HGADPNACDKQHKTPLYYLSGTDDEVIERIN  124 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHHcCCchHHHHH
Confidence            34556666665555555555566666666  55566666665555    45555555666666666555543  245556


Q ss_pred             HHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCC
Q 015738           91 VLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYEN  170 (401)
Q Consensus        91 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~  170 (401)
                      +|+++|++.+                 ...+..|.|||| |+..++.+++++|++.|++. ...|..|+||||+|+.   
T Consensus       125 lLl~~Gadin-----------------~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~---  182 (446)
T PHA02946        125 LLVQYGAKIN-----------------NSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLM---  182 (446)
T ss_pred             HHHHcCCCcc-----------------cccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHH---
Confidence            6666655531                 123445556664 44445556666666555553 3455556666665554   


Q ss_pred             chhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHH
Q 015738          171 RSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA  250 (401)
Q Consensus       171 ~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a  250 (401)
                                 ......+++++|++.|++++..+..|.||||+|+..+..+.+.++.++.  +.+++..+..|.||||+|
T Consensus       183 -----------~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A  249 (446)
T PHA02946        183 -----------SDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLL  249 (446)
T ss_pred             -----------hcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHH
Confidence                       2222445566666666666666666666666666542223344444442  344555556666666666


Q ss_pred             HHcCC-HHHHHHHHhcCc
Q 015738          251 AYYGN-YRTVNLLLETDQ  267 (401)
Q Consensus       251 ~~~~~-~~~~~~Ll~~~~  267 (401)
                      +..++ .+++++|++.|+
T Consensus       250 ~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        250 IKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             HHhCChHHHHHHHHhCCC
Confidence            66555 355555555543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4e-50  Score=354.25  Aligned_cols=328  Identities=15%  Similarity=0.145  Sum_probs=273.5

Q ss_pred             hhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHc
Q 015738            4 NFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF   83 (401)
Q Consensus         4 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~   83 (401)
                      +++.++..++.+.++.+++...     +..+.++||.++-....+.+++++|++    .|++++.+|..|.||||+||..
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~-----~~g~~~~Lh~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~G~TpLh~Aa~~   82 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIE-----PSGNYHILHAYCGIKGLDERFVEELLH----RGYSPNETDDDGNYPLHIASKI   82 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccC-----CCCCChHHHHHHHhcCCCHHHHHHHHH----CcCCCCccCCCCCCHHHHHHHc
Confidence            4678888899999998887421     222478999872224456789999988    7999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCCCCH
Q 015738           84 GHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQG--NVDVVKILTREDPGYPYSANNYGKTP  161 (401)
Q Consensus        84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~t~  161 (401)
                      |+.++|++|+++|+++                  +.+|..|.||||+|+..+  ..+++++|+++|+++....+..|.||
T Consensus        83 g~~eiv~lLL~~GAdi------------------n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         83 NNNRIVAMLLTHGADP------------------NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             CCHHHHHHHHHCcCCC------------------CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence            9999999999999984                  677889999999998866  48999999999999776678899999


Q ss_pred             HHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccccccccc
Q 015738          162 LYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQ  241 (401)
Q Consensus       162 l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~  241 (401)
                      |+.|.                 .++.++++.|++.|++++..+..|.||||+|+....+..+.+++|+..+ .+++..|.
T Consensus       145 L~aa~-----------------~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin~~d~  206 (446)
T PHA02946        145 LLACT-----------------DPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG-ISPSKPDH  206 (446)
T ss_pred             HHHHH-----------------CCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCcccCC
Confidence            98444                 2378999999999999999999999999999887434556777777665 45888999


Q ss_pred             CCCcHHHHHHHcC--CHHHHHHHHhcCccccccccCCCCchHHHHHHhcCC-HHHHHHhhhcCCCC--------------
Q 015738          242 YGWTPIHYAAYYG--NYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD-ARTVERIISGNPKC--------------  304 (401)
Q Consensus       242 ~~~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~-~~~~~~Ll~~~~~~--------------  304 (401)
                      .|.||||+|+..+  +.+++++|++ ++++ +..+. .|.||||+|+..++ .++++.|++++...              
T Consensus       207 ~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi-n~~d~-~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~  283 (446)
T PHA02946        207 DGNTPLHIVCSKTVKNVDIINLLLP-STDV-NKQNK-FGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRD  283 (446)
T ss_pred             CCCCHHHHHHHcCCCcHHHHHHHHc-CCCC-CCCCC-CCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCch
Confidence            9999999999986  7899999985 6665 44444 89999999999988 58999999987542              


Q ss_pred             -----cccc-CCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhh
Q 015738          305 -----YELV-DNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDA  378 (401)
Q Consensus       305 -----~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  378 (401)
                           .+.. +..|.||||+|+..|+.+++++|++    .+       ..|+||||+|+..++.+++++|+.+ |++++.
T Consensus       284 ~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~----~~-------~~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~  351 (446)
T PHA02946        284 DVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLD----ND-------IICEDAMYYAVLSEYETMVDYLLFN-HFSVDS  351 (446)
T ss_pred             HHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHH----CC-------CccccHHHHHHHhCHHHHHHHHHHC-CCCCCC
Confidence                 1111 2357799999999999999999999    43       3679999999999999999999966 999998


Q ss_pred             hhccCcceeeeeec
Q 015738          379 VNKQNVSVRHVFNY  392 (401)
Q Consensus       379 ~~~~g~t~l~~a~~  392 (401)
                      + ..|.||+++|..
T Consensus       352 ~-~~G~t~l~~a~~  364 (446)
T PHA02946        352 V-VNGHTCMSECVR  364 (446)
T ss_pred             c-cccccHHHHHHH
Confidence            6 589999999943

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.9e-50  Score=348.37  Aligned_cols=333  Identities=26%  Similarity=0.299  Sum_probs=298.8

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA   81 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~   81 (401)
                      |+++|.|+..+-.      ++.-......|..|++|||+|  +.....+.+++|++    .|++....+..+.+|+|+|+
T Consensus        62 d~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a--~~~~~~~~i~~Lls----~gad~~~~n~~~~aplh~A~  129 (929)
T KOG0510|consen   62 DTELHHASARNYI------LSKLAISYAKDSADNTPLHAA--VEYNQGDKIQVLLS----YGADTPLRNLNKNAPLHLAA  129 (929)
T ss_pred             hhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHH--hhcchHHHHHHHHh----cCCCCChhhhhccCchhhcc
Confidence            6788888888755      333333556777799999999  99999999999999    79999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 015738           82 KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTP  161 (401)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  161 (401)
                      ..|+.++++.|+++|++                  ++..|..|.||||.|+..++.|..+.|++.|++ +...+.+|.+|
T Consensus       130 ~~~~~s~L~~Ll~~~~d------------------vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~-~~K~~~~~~~~  190 (929)
T KOG0510|consen  130 DSGNYSCLKLLLDYGAD------------------VNLEDENGFTPLHLAARKNKVEAKKELINKGAD-PCKSDIDGNFP  190 (929)
T ss_pred             ccchHHHHHHHHHhcCC------------------ccccccCCCchhhHHHhcChHHHHHHHHhcCCC-CCcccCcCCch
Confidence            99999999999999988                  467888999999999999999988999999999 45788899999


Q ss_pred             HHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHh-----cCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccc-
Q 015738          162 LYMAAEYENRSDMLRGLLENRTSASFDMVLALLE-----NSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL-  235 (401)
Q Consensus       162 l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~-----~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~-  235 (401)
                      +|.|+.                ++..++.+..+.     ++..++.-+..+.+|||.|+..  ++.+.++.+|+.+..+ 
T Consensus       191 iH~aa~----------------s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~--g~~e~lk~~L~n~~~~a  252 (929)
T KOG0510|consen  191 IHEAAR----------------SGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG--GDIEMLKMCLQNGKKIA  252 (929)
T ss_pred             HHHHHH----------------hcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc--CCHHHHHHHHhCccccc
Confidence            999998                448888888888     7788999999999999999999  9999999999865432 


Q ss_pred             -------------ccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhh-cC
Q 015738          236 -------------IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS-GN  301 (401)
Q Consensus       236 -------------~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~~  301 (401)
                                   ++..|.+|.||||+|++.|+.+.++.|+..|+++ +.... ++.||||.|+++|+.+.++.|++ .+
T Consensus       253 ~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~~  330 (929)
T KOG0510|consen  253 DVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNK-DEESPLHFAAIYGRINTVERLLQESD  330 (929)
T ss_pred             hhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCC-CCCCchHHHHHcccHHHHHHHHhCcC
Confidence                         4556889999999999999999999999999998 44443 78899999999999999999999 66


Q ss_pred             CCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccc---cCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhh
Q 015738          302 PKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLID---EGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDA  378 (401)
Q Consensus       302 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  378 (401)
                      ....+..|..|.||||.|++.|+..+++.|++    .|++..   ..|.+|+||||+|+.+|+..++++|+.+ |++++.
T Consensus       331 ~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~----~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~  405 (929)
T KOG0510|consen  331 TRLLNESDLHGMTPLHLAAKSGHDRVVQLLLN----KGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGV  405 (929)
T ss_pred             ccccccccccCCCchhhhhhcCHHHHHHHHHh----cChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceee
Confidence            66788899999999999999999999999999    777776   5699999999999999999999999977 999999


Q ss_pred             hhccCcceeeee
Q 015738          379 VNKQNVSVRHVF  390 (401)
Q Consensus       379 ~~~~g~t~l~~a  390 (401)
                      +|..|.|++++-
T Consensus       406 ~n~~g~SA~~~~  417 (929)
T KOG0510|consen  406 KNKKGKSAFDTR  417 (929)
T ss_pred             cccccccccccc
Confidence            999999999964

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-49  Score=372.86  Aligned_cols=354  Identities=19%  Similarity=0.165  Sum_probs=294.6

Q ss_pred             hhhhhhhcCCCCchhhhhhH------HHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHH
Q 015738            4 NFFKAASAGNSEPFKDMERD------VIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL   77 (401)
Q Consensus         4 ~l~~A~~~g~~~~~~~ll~~------~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L   77 (401)
                      .|+.++..|+.+-+..++++      |.+....+..+.||||+|  +..|+.++|++|++.   .+..+...|..|.|||
T Consensus         5 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A--~~~g~~e~V~~ll~~---~~~~~~~~~~~~~tpL   79 (682)
T PHA02876          5 DLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQA--LQLRQIDIVEEIIQQ---NPELIYITDHKCHSTL   79 (682)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHH--HHHHhhhHHHHHHHh---Ccccchhhchhhcccc
Confidence            47888888888665444443      444444455689999999  999999999999884   5556778899999999


Q ss_pred             HHHH----------------------------------------------------------------------HcCCHH
Q 015738           78 HLAA----------------------------------------------------------------------KFGHFE   87 (401)
Q Consensus        78 ~~A~----------------------------------------------------------------------~~~~~~   87 (401)
                      |+|+                                                                      ..|+.+
T Consensus        80 h~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  159 (682)
T PHA02876         80 HTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELL  159 (682)
T ss_pred             ccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHH
Confidence            9777                                                                      345677


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHh
Q 015738           88 IVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE  167 (401)
Q Consensus        88 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  167 (401)
                      ++++|+++|++                  ++..|..|.||||+|+..|+.+++++|+++|++.. ..+..|.||++.|+.
T Consensus       160 i~k~Ll~~Gad------------------vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n-~~~~~g~t~L~~A~~  220 (682)
T PHA02876        160 IAEMLLEGGAD------------------VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALDDLSVLECAVD  220 (682)
T ss_pred             HHHHHHhCCCC------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-ccCCCCCCHHHHHHH
Confidence            77888888777                  46778899999999999999999999999999854 677889999999998


Q ss_pred             cCCchhHHHhhhhh--------------ccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhc
Q 015738          168 YENRSDMLRGLLEN--------------RTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK  233 (401)
Q Consensus       168 ~~~~~~~~~~l~~~--------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~  233 (401)
                      .++. ++++.+.+.              ...++.+.+++|++.|++++..+..|.||||+|+..  +....+..++...+
T Consensus       221 ~~~~-~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~--~~~~~iv~lLl~~g  297 (682)
T PHA02876        221 SKNI-DTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA--PSLSRLVPKLLERG  297 (682)
T ss_pred             cCCH-HHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC--CCHHHHHHHHHHCC
Confidence            6543 334433332              234578899999999999999999999999999987  66554445555555


Q ss_pred             ccccccccCCCcHHHHHHHcC-CHHHHHHHHhcCccccccccCCCCchHHHHHHhc-CCHHHHHHhhhcCCCCccccCCC
Q 015738          234 NLIKETDQYGWTPIHYAAYYG-NYRTVNLLLETDQSASNIADKDRKMTALHLAAGK-GDARTVERIISGNPKCYELVDNR  311 (401)
Q Consensus       234 ~~~~~~~~~~~t~L~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~  311 (401)
                      .+++..+..|.||||+|+..| +.+++++|+..|++. +..+. .|.||||+|+.. +..++++.|++.|.+ ++.+|..
T Consensus       298 adin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~-~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~  374 (682)
T PHA02876        298 ADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADR-LYITPLHQASTLDRNKDIVITLLELGAN-VNARDYC  374 (682)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCccc-CCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCC
Confidence            668889999999999999999 699999999999987 44444 789999999985 478899999999988 7899999


Q ss_pred             CCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCC-hhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          312 GCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRP-KEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       312 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      |+||||+|+..++.+++++|++    .|++++..+..|.||||+|+..+. ..++++|+.. |++++.+|..|+||||+|
T Consensus       375 G~TpLh~Aa~~~~~~iv~~Ll~----~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~-gadin~~d~~G~TpLh~A  449 (682)
T PHA02876        375 DKTPIHYAAVRNNVVIINTLLD----YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDR-GANVNSKNKDLSTPLHYA  449 (682)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH----CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhC-CCCCCcCCCCCChHHHHH
Confidence            9999999999999999999999    899999999999999999998766 4567777755 999999999999999999


Q ss_pred             ec
Q 015738          391 NY  392 (401)
Q Consensus       391 ~~  392 (401)
                      .+
T Consensus       450 a~  451 (682)
T PHA02876        450 CK  451 (682)
T ss_pred             HH
Confidence            65

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.1e-47  Score=348.18  Aligned_cols=321  Identities=17%  Similarity=0.115  Sum_probs=201.8

Q ss_pred             hcCCCCchhhhhhHH-HHHHHH-hhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCC--
Q 015738           10 SAGNSEPFKDMERDV-IERLLT-AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGH--   85 (401)
Q Consensus        10 ~~g~~~~~~~ll~~~-~~~~~~-~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--   85 (401)
                      +.++.+++++|++.| ++.+.. +..|.||||+|+...+++.+++++|++    .|++++.+|..|.||||+|+..|+  
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~~g~~~  226 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCN----NGVNVNLQNNHLITPLHTYLITGNVC  226 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence            457888899999888 776666 667889998872123456788888887    788888888889999999988885  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHH---HcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 015738           86 FEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV---SQGNVDVVKILTREDPGYPYSANNYGKTPL  162 (401)
Q Consensus        86 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~---~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  162 (401)
                      .++|++|+++|+++                  +.++..|.||||+|+   ..++.++++.|++.+.... .  .....++
T Consensus       227 ~eIVklLLe~GADV------------------N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-~--~~~~~~L  285 (764)
T PHA02716        227 ASVIKKIIELGGDM------------------DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK-V--KNIPMIL  285 (764)
T ss_pred             HHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc-c--ccchhhh
Confidence            48889999988884                  566777888888764   3445566666555432210 0  0011112


Q ss_pred             HH---HHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccccccc
Q 015738          163 YM---AAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKET  239 (401)
Q Consensus       163 ~~---a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~  239 (401)
                      +.   |+.                .++.++++.|++.|++++.++..|.||||+|+....++.+.++.|++.+ .+++..
T Consensus       286 ~~~i~AA~----------------~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G-ADIN~k  348 (764)
T PHA02716        286 HSYITLAR----------------NIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG-NDLNEP  348 (764)
T ss_pred             HHHHHHHH----------------cCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC-CCCccC
Confidence            21   222                3356667777777777666666677777766543224455666655543 346666


Q ss_pred             ccCCCcHHHHHHH--------------cCCHHHHHHHHhcCccccccccCCCCchHHHH----HHhcCCHHHHHHhhhcC
Q 015738          240 DQYGWTPIHYAAY--------------YGNYRTVNLLLETDQSASNIADKDRKMTALHL----AAGKGDARTVERIISGN  301 (401)
Q Consensus       240 ~~~~~t~L~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~----a~~~~~~~~~~~Ll~~~  301 (401)
                      |..|.||||+|+.              .++.+++++|+++|+++ +..+. .|.||||.    |...+..+++++|++.+
T Consensus       349 D~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~-~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        349 DNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI-TAVNC-LGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             CCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCC-CCcCC-CCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence            6667777776653              24566777777766665 23332 56677762    22234566666666543


Q ss_pred             CC------------------------------------------------------------CccccCCCCCcHHHHHHH
Q 015738          302 PK------------------------------------------------------------CYELVDNRGCNFLHYAMV  321 (401)
Q Consensus       302 ~~------------------------------------------------------------~~~~~~~~g~t~l~~A~~  321 (401)
                      ..                                                            .++..|..|+||||+|+.
T Consensus       427 ~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~  506 (764)
T PHA02716        427 VLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSII  506 (764)
T ss_pred             chhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHH
Confidence            21                                                            123345667777777776


Q ss_pred             hCChh-----HHHHHHhcCCccccccccCCCCCCcHHHHHHHhCCh-----hHHHHHHhhcCCChhhh
Q 015738          322 SFHVG-----QLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPK-----EFHDVMNRSTQANYDAV  379 (401)
Q Consensus       322 ~~~~~-----~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-----~~~~~Ll~~~~~~~~~~  379 (401)
                      .++.+     ++++|++    .|+++|.+|.+|+||||+|+++|+.     ++++.||+. |++++..
T Consensus       507 ~g~~~~v~~e~~k~LL~----~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~-ga~~~~~  569 (764)
T PHA02716        507 SHTNANIVMDSFVYLLS----IQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDK-RPNVDIV  569 (764)
T ss_pred             cCCccchhHHHHHHHHh----CCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhc-CCCcchH
Confidence            66553     3367776    6677777777777777777776655     666666654 6666655

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4e-47  Score=337.88  Aligned_cols=353  Identities=13%  Similarity=0.048  Sum_probs=267.1

Q ss_pred             chhhhhhhhcC---CCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhh--hhchHHHHHHHHhhCC--hhhhcccCCCC
Q 015738            2 DLNFFKAASAG---NSEPFKDMERDVIERLLTAKAKNTILHINIISSER--ENVSTKFVEEILEKCP--ALLLQVNAKGD   74 (401)
Q Consensus         2 ~~~l~~A~~~g---~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~--~~~~~~~l~~~~~~~~--~~~~~~~~~g~   74 (401)
                      .||||+|+..|   +.++|++|+++|++...+|..|.||||+|  +..+  +.+++++|++    .|  ++++..+..+.
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~A--a~~~~~~~eIv~~Ll~----~~~~~~~~~~~~~~d  115 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVY--SKRKYVKSQIVHLLIS----SYSNASNELTSNIND  115 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHH--HHcCCCcHHHHHHHHh----cCCCCCcccccccCC
Confidence            37888888876   47888888888888888887888888888  6655  6888888877    43  34455666678


Q ss_pred             cHHHHHHH--cCCHHHHHHHHH-hhhhhccCCCCCCCCchhhHHHhHhcc-CCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 015738           75 TPLHLAAK--FGHFEIVRVLIE-RAKLAQRGDEEPESGVEPFRQMIRMVN-NEKNTALHEAVSQGNVDVVKILTREDPGY  150 (401)
Q Consensus        75 t~L~~A~~--~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  150 (401)
                      +|||.++.  +++.++|++|++ .+.+++..              .+..+ ..|.+|++++...++.++|++|+++|+..
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~--------------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN--------------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYS  181 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhh--------------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence            88888777  778888888886 44454211              01112 37899999999999999999999999986


Q ss_pred             C------CCCCCCCC-CHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccc
Q 015738          151 P------YSANNYGK-TPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT  223 (401)
Q Consensus       151 ~------~~~~~~~~-t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  223 (401)
                      .      ...+.... |.|++.+.....          ..+.+.+++++|+++|++++.++..|.||||++.....++.+
T Consensus       182 ~g~~~~~~~~~~~~c~~~l~~~il~~~~----------~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~e  251 (672)
T PHA02730        182 TGYVFRSCMYDSDRCKNSLHYYILSHRE----------SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIE  251 (672)
T ss_pred             cccccccccccCCccchhHHHHHHhhhh----------hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHH
Confidence            3      11233333 445545542210          124589999999999999999999999999975444336678


Q ss_pred             hHHHHHH-----------h--------------------hcccccc--------------------cccCCCc-------
Q 015738          224 ALPKLLE-----------K--------------------KKNLIKE--------------------TDQYGWT-------  245 (401)
Q Consensus       224 ~~~~ll~-----------~--------------------~~~~~~~--------------------~~~~~~t-------  245 (401)
                      +++.|+.           .                    .+.+...                    .+..|.+       
T Consensus       252 iv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i  331 (672)
T PHA02730        252 IVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNI  331 (672)
T ss_pred             HHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHH
Confidence            8888887           0                    1222222                    3344433       


Q ss_pred             --------------HHHHHHHcC---CHHHHHHHHhcCccccccccCCCCchHHHHHHhcCC----HHHHHHhhhcCCC-
Q 015738          246 --------------PIHYAAYYG---NYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD----ARTVERIISGNPK-  303 (401)
Q Consensus       246 --------------~L~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~~~~Ll~~~~~-  303 (401)
                                    .|+.-...+   +.+++++|+++|++++. .  ..|.||||+|+..++    .+++++|+++|++ 
T Consensus       332 ~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~-k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~  408 (672)
T PHA02730        332 LKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK-T--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM  408 (672)
T ss_pred             HHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc-C--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc
Confidence                          566666655   69999999999999853 3  488999999998875    8999999999974 


Q ss_pred             CccccCCCCCcHHHH---HHHhC---------ChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          304 CYELVDNRGCNFLHY---AMVSF---------HVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       304 ~~~~~~~~g~t~l~~---A~~~~---------~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      +++.+|..|.||||.   |...+         ..+++++|+.    .|+++|.+|..|+||||+|+..++.+++++|+..
T Consensus       409 dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs----~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~  484 (672)
T PHA02730        409 AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK----YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEY  484 (672)
T ss_pred             cccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh----cccchhccCCCCCCHHHHHHHhCCHHHHHHHHHC
Confidence            478899999999984   33222         2356999999    8999999999999999999999999999999966


Q ss_pred             cCCChhhhhc-cCcceeeeeec
Q 015738          372 TQANYDAVNK-QNVSVRHVFNY  392 (401)
Q Consensus       372 ~~~~~~~~~~-~g~t~l~~a~~  392 (401)
                       |++++.+|. .|.||+++|..
T Consensus       485 -GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        485 -GASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             -CCCCCCCCCcCCcCHHHHHHH
Confidence             999999997 59999999954

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-46  Score=332.93  Aligned_cols=319  Identities=20%  Similarity=0.202  Sum_probs=266.9

Q ss_pred             CchhhhhhhhcCCCCchhhhhhHHH-HHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHH
Q 015738            1 MDLNFFKAASAGNSEPFKDMERDVI-ERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHL   79 (401)
Q Consensus         1 ~~~~l~~A~~~g~~~~~~~ll~~~~-~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~   79 (401)
                      ++..|..|+..|+++.|+.|++.+. .....+..|.||||+|  +..|+.+++++|++    .|++++..+..|.||||+
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A--~~~g~~~iv~~Ll~----~Ga~~n~~~~~~~t~L~~   74 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDA--IRSGDAKIVELFIK----HGADINHINTKIPHPLLT   74 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHH
Confidence            4668999999999999999998633 2334555699999999  99999999999998    799999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Q 015738           80 AAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGK  159 (401)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  159 (401)
                      |+..|+.+++++|+++|++..                          .  .+......+++++|++.|.++. ..+..|.
T Consensus        75 A~~~~~~~iv~~Ll~~g~~~~--------------------------~--~~~~~~~~~~i~~ll~~g~d~n-~~~~~g~  125 (434)
T PHA02874         75 AIKIGAHDIIKLLIDNGVDTS--------------------------I--LPIPCIEKDMIKTILDCGIDVN-IKDAELK  125 (434)
T ss_pred             HHHcCCHHHHHHHHHCCCCCC--------------------------c--chhccCCHHHHHHHHHCcCCCC-CCCCCCc
Confidence            999999999999999988641                          1  1223456789999999998854 6788899


Q ss_pred             CHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccccccc
Q 015738          160 TPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKET  239 (401)
Q Consensus       160 t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~  239 (401)
                      ||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  +..+.++.|+..+.. ++..
T Consensus       126 T~Lh~A~~----------------~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~--~~~~iv~~Ll~~g~~-~n~~  186 (434)
T PHA02874        126 TFLHYAIK----------------KGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH--NFFDIIKLLLEKGAY-ANVK  186 (434)
T ss_pred             cHHHHHHH----------------CCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC--CcHHHHHHHHHCCCC-CCCC
Confidence            99999998                3489999999999999999999999999999988  888888888877654 6778


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHH
Q 015738          240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYA  319 (401)
Q Consensus       240 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  319 (401)
                      +..|.||||+|+..|+.+++++|++.|++.. .... .|.||||.|+..+. +.+++|+ .+.+ ++.+|..|+||||+|
T Consensus       187 ~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~-~~~~-~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A  261 (434)
T PHA02874        187 DNNGESPLHNAAEYGDYACIKLLIDHGNHIM-NKCK-NGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHA  261 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc-CCCC-CCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHH
Confidence            8899999999999999999999999998863 3333 78999999998765 5666666 4555 678899999999999


Q ss_pred             HHhC-ChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhC-ChhHHHHHHhhcCCChhhhhccC
Q 015738          320 MVSF-HVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVR-PKEFHDVMNRSTQANYDAVNKQN  383 (401)
Q Consensus       320 ~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~g  383 (401)
                      +..+ +.+++++|++    .|++++.+|..|.||||+|++.+ ..++++.|+.. ++.++..+..+
T Consensus       262 ~~~~~~~~iv~~Ll~----~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~-~~~~~~~~~~~  322 (434)
T PHA02874        262 INPPCDIDIIDILLY----HKADISIKDNKGENPIDTAFKYINKDPVIKDIIAN-AVLIKEADKLK  322 (434)
T ss_pred             HhcCCcHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHh-cCchhhccccc
Confidence            9875 7899999999    89999999999999999999887 66778888765 66665544433

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.6e-46  Score=331.06  Aligned_cols=293  Identities=21%  Similarity=0.237  Sum_probs=256.0

Q ss_pred             eeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHH
Q 015738           37 ILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQM  116 (401)
Q Consensus        37 ~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  116 (401)
                      .|..|  +..|+.+.++.+++   ..+..++..+..|.||||.|+..|+.++|++|+++|+++                 
T Consensus         4 ~l~~a--i~~gd~~~v~~ll~---~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-----------------   61 (434)
T PHA02874          4 DLRMC--IYSGDIEAIEKIIK---NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-----------------   61 (434)
T ss_pred             HHHHH--HhcCCHHHHHHHHH---cCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----------------
Confidence            35567  89999999999976   356778888899999999999999999999999999984                 


Q ss_pred             hHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhc
Q 015738          117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN  196 (401)
Q Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~  196 (401)
                       +..+..|.||||+|+..|+.+++++|+++|++...         +.  ..                ....++++.+++.
T Consensus        62 -n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~---------~~--~~----------------~~~~~~i~~ll~~  113 (434)
T PHA02874         62 -NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI---------LP--IP----------------CIEKDMIKTILDC  113 (434)
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc---------ch--hc----------------cCCHHHHHHHHHC
Confidence             56677899999999999999999999999876421         11  11                2267899999999


Q ss_pred             CCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCC
Q 015738          197 STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKD  276 (401)
Q Consensus       197 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  276 (401)
                      |++++..+..|.||||+|+..  ++.+.++.|+..+.. ++..+..|.||||+|+..|+.+++++|++.|++. +..+. 
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~--~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~-  188 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKK--GDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDN-  188 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHC--CCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCC-
Confidence            999999999999999999998  889999998887544 7888999999999999999999999999999887 33443 


Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      .|.||||.|+..|+.+++++|++.+++ ++.++..|.||||+|+..+. +.+++|+.     |++++.+|..|.||||+|
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-----~~~in~~d~~G~TpLh~A  261 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLIN-----NASINDQDIDGSTPLHHA  261 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHHc-----CCCCCCcCCCCCCHHHHH
Confidence            789999999999999999999999988 67889999999999999765 56666664     688999999999999999


Q ss_pred             HHhC-ChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          357 AAVR-PKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       357 ~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      +..+ +.+++++|+.. |+|++.+|..|.||+++|.+
T Consensus       262 ~~~~~~~~iv~~Ll~~-gad~n~~d~~g~TpL~~A~~  297 (434)
T PHA02874        262 INPPCDIDIIDILLYH-KADISIKDNKGENPIDTAFK  297 (434)
T ss_pred             HhcCCcHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHH
Confidence            9876 78999999966 99999999999999999943

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=328.44  Aligned_cols=296  Identities=20%  Similarity=0.180  Sum_probs=249.5

Q ss_pred             chhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcC---CHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhc
Q 015738           44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG---HFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV  120 (401)
Q Consensus        44 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (401)
                      +..++.+++++|++    .|++++..+..|.||||+|+..+   +.+++++|+++|++.                  +..
T Consensus        22 ~~~~~~~~v~~Ll~----~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi------------------n~~   79 (471)
T PHA03095         22 ASNVTVEEVRRLLA----AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV------------------NAP   79 (471)
T ss_pred             CCCCCHHHHHHHHH----cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC------------------CCC
Confidence            77888899999988    78999999999999999999988   899999999999884                  667


Q ss_pred             cCCCChHHHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC
Q 015738          121 NNEKNTALHEAVSQG-NVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS  199 (401)
Q Consensus       121 ~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~  199 (401)
                      +..|.||||+|+..+ +.+++++|+++|+++ ...+..|.||||+|+.              ....+.+++++|++.|++
T Consensus        80 ~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~--------------~~~~~~~iv~~Ll~~gad  144 (471)
T PHA03095         80 ERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLS--------------GFNINPKVIRLLLRKGAD  144 (471)
T ss_pred             CCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhh--------------CCcCCHHHHHHHHHcCCC
Confidence            778999999999999 599999999999884 4778889999999995              234478899999999999


Q ss_pred             CccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHc--CCHHHHHHHHhcCccccccccCCC
Q 015738          200 VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYY--GNYRTVNLLLETDQSASNIADKDR  277 (401)
Q Consensus       200 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~~  277 (401)
                      ++..+..|.||||+++.......+.++.|+..+.. +...+..|.||||+++..  ++.++++.|++.|+++ ...+. .
T Consensus       145 ~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~-~  221 (471)
T PHA03095        145 VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDM-L  221 (471)
T ss_pred             CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCC-C
Confidence            99999999999999887743455677777776555 555588899999998875  6789999999999887 44444 7


Q ss_pred             CchHHHHHHhcCCH--HHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHH
Q 015738          278 KMTALHLAAGKGDA--RTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV  355 (401)
Q Consensus       278 g~t~L~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  355 (401)
                      |.||||.|+..+..  .+++.|++.|.+ ++.+|..|+||||+|+..|+.+++++|++    .|++++.+|..|.||||+
T Consensus       222 g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~----~gad~n~~~~~g~tpl~~  296 (471)
T PHA03095        222 GNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIA----LGADINAVSSDGNTPLSL  296 (471)
T ss_pred             CCCHHHHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHH
Confidence            88999999988864  678888888887 68899999999999999999999999999    899999999999999999


Q ss_pred             HHHhCChhHHHHHHhhcCCChhhhhccCcc
Q 015738          356 LAAVRPKEFHDVMNRSTQANYDAVNKQNVS  385 (401)
Q Consensus       356 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  385 (401)
                      |+..++.++++.|+.. +++++.......+
T Consensus       297 A~~~~~~~~v~~LL~~-~~~~~~~~~~~~~  325 (471)
T PHA03095        297 MVRNNNGRAVRAALAK-NPSAETVAATLNT  325 (471)
T ss_pred             HHHhCCHHHHHHHHHh-CCCHHHHHHHHHH
Confidence            9999999999999966 8888765544433

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-45  Score=336.87  Aligned_cols=355  Identities=15%  Similarity=0.059  Sum_probs=262.5

Q ss_pred             chhhhhhhhc---CCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHH
Q 015738            2 DLNFFKAASA---GNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLH   78 (401)
Q Consensus         2 ~~~l~~A~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~   78 (401)
                      .||||.||..   |+.+++++|++.|++....+..|.||||+|  +..|+.++++.+.+.+...+...+..+  ..++++
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~A--a~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~  108 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEY--TNSRHVKVNKDIAMALLEATGYSNIND--FNIFSY  108 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHH--HHcCChhHHHHHHHHHHhccCCCCCCC--cchHHH
Confidence            4899997555   889999999999998888888899999999  999987776655554432322223322  236778


Q ss_pred             HHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHH--HcCCHHHHHHHHhcCCCCCCC--C
Q 015738           79 LAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV--SQGNVDVVKILTREDPGYPYS--A  154 (401)
Q Consensus        79 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~--~  154 (401)
                      +|+.+|+.++|++|+++|+++                  +.+|..|.||||+|+  ..|+.+++++|+++|+++...  .
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadi------------------n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~  170 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDL------------------SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDED  170 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCC------------------CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccc
Confidence            899999999999999999994                  677889999999654  578999999999999986521  1


Q ss_pred             CCCC-----------CCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhccccc-
Q 015738          155 NNYG-----------KTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVD-  222 (401)
Q Consensus       155 ~~~~-----------~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~-  222 (401)
                      +..|           .||||+|+.......     ......++.+++++|++.|++++..+..|.||||+|+..  ++. 
T Consensus       171 ~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~-----~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~--g~~~  243 (661)
T PHA02917        171 DEYGYAYDDYQPRNCGTVLHLYIISHLYSE-----SDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKS--SHID  243 (661)
T ss_pred             cccccccccccccccccHHHHHHhhccccc-----ccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHc--CCCc
Confidence            2233           599999985210000     000012378999999999999999999999999999998  554 


Q ss_pred             -chHHHHHHhhcccc---cccccCCCcHHHHHHHc---------CCHHHHHHHHhcCccccccc------cC--------
Q 015738          223 -TALPKLLEKKKNLI---KETDQYGWTPIHYAAYY---------GNYRTVNLLLETDQSASNIA------DK--------  275 (401)
Q Consensus       223 -~~~~~ll~~~~~~~---~~~~~~~~t~L~~a~~~---------~~~~~~~~Ll~~~~~~~~~~------~~--------  275 (401)
                       ++++.|+. +....   ...+..+.+|++.|+.-         .+.+++++|++.|++.....      ..        
T Consensus       244 ~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~  322 (661)
T PHA02917        244 IDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLI  322 (661)
T ss_pred             HHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHH
Confidence             67777753 43321   23455677888888831         16789999999997531100      01        


Q ss_pred             ---CCCchHHHH---HHhcCC--HHHHHHhhhcCCCC-----------------------------ccccCCCCCcHHHH
Q 015738          276 ---DRKMTALHL---AAGKGD--ARTVERIISGNPKC-----------------------------YELVDNRGCNFLHY  318 (401)
Q Consensus       276 ---~~g~t~L~~---a~~~~~--~~~~~~Ll~~~~~~-----------------------------~~~~~~~g~t~l~~  318 (401)
                         ..+.+++|.   ++..|.  .+++++|++.|++.                             ....+..|.||||.
T Consensus       323 ~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~  402 (661)
T PHA02917        323 LKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGH  402 (661)
T ss_pred             HHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHH
Confidence               122234333   333554  45777777766641                             12234569999999


Q ss_pred             HHHhC-----------------------ChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCC
Q 015738          319 AMVSF-----------------------HVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQAN  375 (401)
Q Consensus       319 A~~~~-----------------------~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  375 (401)
                      |++.+                       ..++++.|++    .|+++|.+|..|.||||+|+..++.+++++|+.. |+|
T Consensus       403 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~----~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~-GAd  477 (661)
T PHA02917        403 LCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP----YLKDINMIDKRGETLLHKAVRYNKQSLVSLLLES-GSD  477 (661)
T ss_pred             HHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH----CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHC-cCC
Confidence            87543                       3567799999    8999999999999999999999999999999965 999


Q ss_pred             hhhhhccCcceeeeee
Q 015738          376 YDAVNKQNVSVRHVFN  391 (401)
Q Consensus       376 ~~~~~~~g~t~l~~a~  391 (401)
                      ++.+|..|.|||++|.
T Consensus       478 in~~d~~G~T~L~~A~  493 (661)
T PHA02917        478 VNIRSNNGYTCIAIAI  493 (661)
T ss_pred             CCCCCCCCCCHHHHHH
Confidence            9999999999999996

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=334.19  Aligned_cols=293  Identities=20%  Similarity=0.181  Sum_probs=259.6

Q ss_pred             hhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhh---hhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHH
Q 015738            6 FKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSER---ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK   82 (401)
Q Consensus         6 ~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~   82 (401)
                      ..|+..++.++|++|++.|++.+..+..|.||||+|  +..+   +.+++++|++    .|++++.++..|.||||+|+.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a--~~~~~~~~~~iv~~Ll~----~Gadin~~~~~g~TpLh~A~~   92 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLY--LHYSSEKVKDIVRLLLE----AGADVNAPERCGFTPLHLYLY   92 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHH--HHhcCCChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence            467888999999999999999988898899999999  8888   9999999998    899999999999999999999


Q ss_pred             cC-CHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHH--HcCCHHHHHHHHhcCCCCCCCCCCCCC
Q 015738           83 FG-HFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV--SQGNVDVVKILTREDPGYPYSANNYGK  159 (401)
Q Consensus        83 ~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~  159 (401)
                      .| +.+++++|+++|+++                  +..+..|.||||+|+  ..++.+++++|+++|+++ ...+..|.
T Consensus        93 ~~~~~~iv~lLl~~ga~i------------------n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~  153 (471)
T PHA03095         93 NATTLDVIKLLIKAGADV------------------NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGM  153 (471)
T ss_pred             cCCcHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCC
Confidence            99 599999999999984                  677889999999999  556899999999999985 47888999


Q ss_pred             CHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccccccc
Q 015738          160 TPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKET  239 (401)
Q Consensus       160 t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~  239 (401)
                      ||||+++.              ......++++.|++.|++++..+..|.||||.++....+....++.++..+ .+++..
T Consensus       154 tpL~~a~~--------------~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~  218 (471)
T PHA03095        154 TPLAVLLK--------------SRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAG-CDPAAT  218 (471)
T ss_pred             CHHHHHHH--------------cCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC-CCCccc
Confidence            99999997              334478999999999999999999999999999876445566677766655 558999


Q ss_pred             ccCCCcHHHHHHHcCCH--HHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHH
Q 015738          240 DQYGWTPIHYAAYYGNY--RTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLH  317 (401)
Q Consensus       240 ~~~~~t~L~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  317 (401)
                      +..|.||||+|+..|+.  .+++.|++.|.+. +..+ ..|.||||+|+..|+.+++++|++.|++ ++.++..|+||||
T Consensus       219 d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d-~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~  295 (471)
T PHA03095        219 DMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARN-RYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLS  295 (471)
T ss_pred             CCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHH
Confidence            99999999999999875  6888999999887 4444 4899999999999999999999999998 7899999999999


Q ss_pred             HHHHhCChhHHHHHHhcCCccccccccC
Q 015738          318 YAMVSFHVGQLRNLLENNPLARSLIDEG  345 (401)
Q Consensus       318 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  345 (401)
                      +|+..++.++++.|++    .+.+++..
T Consensus       296 ~A~~~~~~~~v~~LL~----~~~~~~~~  319 (471)
T PHA03095        296 LMVRNNNGRAVRAALA----KNPSAETV  319 (471)
T ss_pred             HHHHhCCHHHHHHHHH----hCCCHHHH
Confidence            9999999999999999    55555443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-43  Score=320.36  Aligned_cols=284  Identities=24%  Similarity=0.316  Sum_probs=254.1

Q ss_pred             hhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCCh
Q 015738           47 RENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNT  126 (401)
Q Consensus        47 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  126 (401)
                      ...++++++++    .+...+..+..+.||||.|+..|+.++|++|+++|+++                  +..+..+.|
T Consensus        13 ~~~~~~~~~~~----~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~------------------~~~~~~~~t   70 (480)
T PHA03100         13 IKVKNIKYIIM----EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADI------------------NSSTKNNST   70 (480)
T ss_pred             HHHHHHHHHHh----cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCC------------------CCccccCcC
Confidence            34455666655    56777778889999999999999999999999999985                  456778999


Q ss_pred             HHHH-----HHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH--hcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC
Q 015738          127 ALHE-----AVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAA--EYENRSDMLRGLLENRTSASFDMVLALLENSTS  199 (401)
Q Consensus       127 ~L~~-----A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~  199 (401)
                      |||+     |+..++.+++++|+++|+++ ...+..|.||||+|+  .                .++.+++++|++.|++
T Consensus        71 ~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~----------------~~~~~iv~~Ll~~g~~  133 (480)
T PHA03100         71 PLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKK----------------SNSYSIVEYLLDNGAN  133 (480)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcc----------------cChHHHHHHHHHcCCC
Confidence            9999     99999999999999999996 678889999999999  5                4489999999999999


Q ss_pred             CccCCCCCCcHHhHHHhhccc--ccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCC
Q 015738          200 VSHEGPNGKTALHAAAMRSFA--VDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDR  277 (401)
Q Consensus       200 ~~~~~~~~~t~l~~a~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  277 (401)
                      ++..+..|.||||+|+..  +  +.+.++.|++.+.. ++..+..|.||||+|+..|+.+++++|++.|+++. .... .
T Consensus       134 ~~~~~~~g~t~L~~A~~~--~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~-~  208 (480)
T PHA03100        134 VNIKNSDGENLLHLYLES--NKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN-AGDI-E  208 (480)
T ss_pred             CCccCCCCCcHHHHHHHc--CCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc-CCCC-C
Confidence            999999999999999998  6  78888888877654 78888899999999999999999999999998874 3333 4


Q ss_pred             C------chHHHHHHhcCC--HHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCC
Q 015738          278 K------MTALHLAAGKGD--ARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEG  349 (401)
Q Consensus       278 g------~t~L~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g  349 (401)
                      |      .||||.|+..++  .+++++|++.|.+ ++.+|..|.||||+|+..++.+++++|++    .|++++.+|..|
T Consensus       209 ~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~----~gad~n~~d~~g  283 (480)
T PHA03100        209 TLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLD----LGANPNLVNKYG  283 (480)
T ss_pred             CCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCC
Confidence            5      799999999999  9999999999988 68899999999999999999999999999    899999999999


Q ss_pred             CcHHHHHHHhCChhHHHHHHhhcCCChhhhh
Q 015738          350 NTPLHVLAAVRPKEFHDVMNRSTQANYDAVN  380 (401)
Q Consensus       350 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  380 (401)
                      .||||+|+..++.+++++|++. |++++..+
T Consensus       284 ~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~  313 (480)
T PHA03100        284 DTPLHIAILNNNKEIFKLLLNN-GPSIKTII  313 (480)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhc-CCCHHHHH
Confidence            9999999999999999999976 99988755

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.3e-44  Score=310.95  Aligned_cols=305  Identities=25%  Similarity=0.306  Sum_probs=268.2

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA   81 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~   81 (401)
                      .++||.|+..+..+.+++|++.|++....+..+.+|+|+|  +..+.....+.|++    .+++++..|..|.||||.||
T Consensus        89 n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A--~~~~~~s~L~~Ll~----~~~dvnl~de~~~TpLh~A~  162 (929)
T KOG0510|consen   89 NTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLA--ADSGNYSCLKLLLD----YGADVNLEDENGFTPLHLAA  162 (929)
T ss_pred             CchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhc--cccchHHHHHHHHH----hcCCccccccCCCchhhHHH
Confidence            4789999999999999999999999999999999999999  99999999999999    68999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHh-----cCCCCCCCCCC
Q 015738           82 KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTR-----EDPGYPYSANN  156 (401)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~  156 (401)
                      ..++.|..+.|++.|+++                  ...|.+|.+|+|.|+++|..|+++..+.     .... .+..+.
T Consensus       163 ~~~~~E~~k~Li~~~a~~------------------~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~-in~~~n  223 (929)
T KOG0510|consen  163 RKNKVEAKKELINKGADP------------------CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH-INFDNN  223 (929)
T ss_pred             hcChHHHHHHHHhcCCCC------------------CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc-cccccC
Confidence            999999889999999996                  3557789999999999999999999998     3333 345677


Q ss_pred             CCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC---------------CccCCCCCCcHHhHHHhhcccc
Q 015738          157 YGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS---------------VSHEGPNGKTALHAAAMRSFAV  221 (401)
Q Consensus       157 ~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~---------------~~~~~~~~~t~l~~a~~~~~~~  221 (401)
                      .+.+|||.|+..+                +.++++.+++.|..               ++..|.+|.||||+|++.  |.
T Consensus       224 ~~~~pLhlAve~g----------------~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~--G~  285 (929)
T KOG0510|consen  224 EKATPLHLAVEGG----------------DIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQ--GG  285 (929)
T ss_pred             CCCcchhhhhhcC----------------CHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHc--CC
Confidence            8999999999833                56666666655532               345688999999999999  99


Q ss_pred             cchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHh-cCccccccccCCCCchHHHHHHhcCCHHHHHHhhhc
Q 015738          222 DTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE-TDQSASNIADKDRKMTALHLAAGKGDARTVERIISG  300 (401)
Q Consensus       222 ~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  300 (401)
                      .+.+..|+..+.+ ++.++.++.||||.|+++|+.+.++.|++ .+....+.. +..|.||||.|++.|+.++++.|+++
T Consensus       286 ~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~-D~~g~tpLHlaa~~gH~~v~qlLl~~  363 (929)
T KOG0510|consen  286 PESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNES-DLHGMTPLHLAAKSGHDRVVQLLLNK  363 (929)
T ss_pred             hhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccc-cccCCCchhhhhhcCHHHHHHHHHhc
Confidence            9999988887666 88899999999999999999999999999 333332333 34899999999999999999999999


Q ss_pred             CCCCcc--ccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHH
Q 015738          301 NPKCYE--LVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV  355 (401)
Q Consensus       301 ~~~~~~--~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  355 (401)
                      |+...+  ..|++|+||||.|+..|+..+++.|+.    +|+++..+|..|.|++++
T Consensus       364 GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~----~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  364 GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS----HGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             ChhhhcccccccCCchhhhHHHHhccHHHHHHHHH----cCCceeeccccccccccc
Confidence            998765  559999999999999999999999999    999999999999999984

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.1e-43  Score=317.35  Aligned_cols=303  Identities=18%  Similarity=0.110  Sum_probs=242.8

Q ss_pred             hhhhhchHHHHHHHHhhCC-hhhhcc-cCCCCcHHHHHHH--cCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhc
Q 015738           45 SERENVSTKFVEEILEKCP-ALLLQV-NAKGDTPLHLAAK--FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV  120 (401)
Q Consensus        45 ~~~~~~~~~~l~~~~~~~~-~~~~~~-~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (401)
                      +.+..+++++|++    .| ++++.. +..|.||||+|+.  +++.++|++|+++|++                  ++.+
T Consensus       151 ~~v~leiVk~LLe----~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD------------------VN~k  208 (764)
T PHA02716        151 RGIDLDLIKYMVD----VGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN------------------VNLQ  208 (764)
T ss_pred             cCCCHHHHHHHHH----CCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC------------------CCCC
Confidence            4688999999998    67 899998 8999999999875  4678999999999998                  4678


Q ss_pred             cCCCChHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCC
Q 015738          121 NNEKNTALHEAVSQGN--VDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENST  198 (401)
Q Consensus       121 ~~~g~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~  198 (401)
                      |..|.||||+|+..|+  .+++++|+++|+++ ..++..|.||||+|+..             ...+..++++.+++.+.
T Consensus       209 D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~-------------a~n~~~EIvkiLie~~d  274 (764)
T PHA02716        209 NNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIIN-------------IDNINPEITNIYIESLD  274 (764)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHh-------------hhccCHHHHHHHHHhcc
Confidence            8899999999999995  59999999999995 47889999999998742             12347889999988653


Q ss_pred             CCccCCCCCCcHHh---HHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHH--cCCHHHHHHHHhcCccccccc
Q 015738          199 SVSHEGPNGKTALH---AAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAY--YGNYRTVNLLLETDQSASNIA  273 (401)
Q Consensus       199 ~~~~~~~~~~t~l~---~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~--~~~~~~~~~Ll~~~~~~~~~~  273 (401)
                      .-...  ....+++   .|+..  ++.+.++.|++.+. +++..|..|.||||+|+.  .++.+++++|++.|+++ +..
T Consensus       275 ~n~~~--~~~~~L~~~i~AA~~--g~leiVklLLe~GA-dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~k  348 (764)
T PHA02716        275 GNKVK--NIPMILHSYITLARN--IDISVVYSFLQPGV-KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEP  348 (764)
T ss_pred             ccccc--cchhhhHHHHHHHHc--CCHHHHHHHHhCCC-ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccC
Confidence            32111  1122333   35556  77888988887655 488899999999999875  46789999999999987 444


Q ss_pred             cCCCCchHHHHHHh--------------cCCHHHHHHhhhcCCCCccccCCCCCcHHHHH----HHhCChhHHHHHHhcC
Q 015738          274 DKDRKMTALHLAAG--------------KGDARTVERIISGNPKCYELVDNRGCNFLHYA----MVSFHVGQLRNLLENN  335 (401)
Q Consensus       274 ~~~~g~t~L~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A----~~~~~~~~~~~Ll~~~  335 (401)
                      +. .|+||||.|+.              .++.+++++|+++|++ ++.+|..|+||||.+    ...+..+++++|++..
T Consensus       349 D~-~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        349 DN-IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             CC-CCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence            44 89999999875              3689999999999988 789999999999942    2346788888887742


Q ss_pred             C---------------------------------------------------------ccccccccCCCCCCcHHHHHHH
Q 015738          336 P---------------------------------------------------------LARSLIDEGDAEGNTPLHVLAA  358 (401)
Q Consensus       336 ~---------------------------------------------------------~~~~~~~~~~~~g~t~L~~A~~  358 (401)
                      .                                                         ..+.++|..|..|.||||+|+.
T Consensus       427 ~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~  506 (764)
T PHA02716        427 VLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSII  506 (764)
T ss_pred             chhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHH
Confidence            1                                                         0123456678899999999999


Q ss_pred             hCChhH-----HHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          359 VRPKEF-----HDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       359 ~~~~~~-----~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      .|+.++     +++|++. |+|++.+|..|+||||+|..
T Consensus       507 ~g~~~~v~~e~~k~LL~~-GADIN~~d~~G~TPLh~A~~  544 (764)
T PHA02716        507 SHTNANIVMDSFVYLLSI-QYNINIPTKNGVTPLMLTMR  544 (764)
T ss_pred             cCCccchhHHHHHHHHhC-CCCCcccCCCCCCHHHHHHH
Confidence            988754     4889855 99999999999999999954

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.2e-44  Score=332.73  Aligned_cols=356  Identities=24%  Similarity=0.306  Sum_probs=267.8

Q ss_pred             hhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHH
Q 015738            3 LNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK   82 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~   82 (401)
                      ||+|.||..+-+++++.++.+|.+....+..|.+|||.|  +..|+.+++.++++    .++.++..+..|.||+|.|+.
T Consensus       211 tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a--~~~g~~~i~~~l~~----~ga~~~~~~vr~~tplh~AA~  284 (1143)
T KOG4177|consen  211 TPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVA--AFMGHLDIVKLLLQ----HGASVNVSTVRGETPLHMAAR  284 (1143)
T ss_pred             CchhhhccccccceeeeeeeccCcCCcccccCccHHHHH--HhccchhHHHHHHh----cccccCcccccccCcchhhhc
Confidence            567777777777777777777777777777777777777  77777777777777    567777777777777777777


Q ss_pred             cCCHHHHHHHHHhhhhhccCCCCCCCCchhh---------------HHHhHh----------------------------
Q 015738           83 FGHFEIVRVLIERAKLAQRGDEEPESGVEPF---------------RQMIRM----------------------------  119 (401)
Q Consensus        83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~----------------------------  119 (401)
                      .+..+++++|+++|+++........+.+...               ....+.                            
T Consensus       285 ~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~  364 (1143)
T KOG4177|consen  285 AGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHG  364 (1143)
T ss_pred             cchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccc
Confidence            7777777777777776554444332221110               000122                            


Q ss_pred             -----ccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHH
Q 015738          120 -----VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALL  194 (401)
Q Consensus       120 -----~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  194 (401)
                           .+..|.||+|.|+..|..+++++++..|.. .+.....|.||+|.++.                .++..+++.++
T Consensus       365 ~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~----------------~~~~~~v~l~l  427 (1143)
T KOG4177|consen  365 AQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLHVAAH----------------YGNPRVVKLLL  427 (1143)
T ss_pred             cccCcccccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCcceeeehhh----------------ccCcceEEEEe
Confidence                 234455666666666666666666666655 44555566666666665                23677888888


Q ss_pred             hcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcccccccc
Q 015738          195 ENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD  274 (401)
Q Consensus       195 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~  274 (401)
                      +.|++++..+..|.||+|.|+..  +.......++...+.+++.....|.||||.|...|+.+++..+++.++.. +. +
T Consensus       428 ~~gA~~~~~~~lG~T~lhvaa~~--g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~-~  503 (1143)
T KOG4177|consen  428 KRGASPNAKAKLGYTPLHVAAKK--GRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NL-D  503 (1143)
T ss_pred             ccCCChhhHhhcCCChhhhhhhc--ccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-Cc-c
Confidence            88888888888888999998887  54455555555666668888888999999999999999999999887544 22 2


Q ss_pred             CCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHH
Q 015738          275 KDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLH  354 (401)
Q Consensus       275 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~  354 (401)
                      ...+.+++|.+...+...+++.++++|.. ++.++..|+||||.|+.+|+.++|++|++    .|++++.++..|+||||
T Consensus       504 ~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe----~gAdv~ak~~~G~TPLH  578 (1143)
T KOG4177|consen  504 AKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLE----HGADVNAKDKLGYTPLH  578 (1143)
T ss_pred             chhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhh----CCccccccCCCCCChhh
Confidence            23778899999999999999999988887 68899999999999999999999999999    89999999999999999


Q ss_pred             HHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeee
Q 015738          355 VLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       355 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  391 (401)
                      .|+..|+.+++.+|+++ |+++|..|.+|.|||++|.
T Consensus       579 ~Aa~~G~~~i~~LLlk~-GA~vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  579 QAAQQGHNDIAELLLKH-GASVNAADLDGFTPLHIAV  614 (1143)
T ss_pred             HHHHcChHHHHHHHHHc-CCCCCcccccCcchhHHHH
Confidence            99999999999999866 9999999999999999993

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-42  Score=308.29  Aligned_cols=330  Identities=17%  Similarity=0.160  Sum_probs=249.3

Q ss_pred             hhhhhhHHHHHH-HHhhcCCCeeEEeecchhh---hhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcC--CHHHHH
Q 015738           17 FKDMERDVIERL-LTAKAKNTILHINIISSER---ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG--HFEIVR   90 (401)
Q Consensus        17 ~~~ll~~~~~~~-~~~~~g~t~L~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~   90 (401)
                      ++..++.-.+.+ ..|..|+||||+|  +..|   +.+++++|++    .|++++.+|..|.||||+|+..+  +.++|+
T Consensus        23 ~~~~~~~~~~in~~kd~~G~TaLh~A--~~~~~~~~~eivklLLs----~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~   96 (672)
T PHA02730         23 IKLEIETCHNLSKHIDRRGNNALHCY--VSNKCDTDIKIVRLLLS----RGVERLCRNNEGLTPLGVYSKRKYVKSQIVH   96 (672)
T ss_pred             HHHHHHHhcchhhhcCCCCCcHHHHH--HHcCCcCcHHHHHHHHh----CCCCCcccCCCCCChHHHHHHcCCCcHHHHH
Confidence            444444322223 5666799999999  8876   5999999998    89999999999999999999977  799999


Q ss_pred             HHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHH--cCCHHHHHHHHh-cCCCCCCCCC----CCCCCHHH
Q 015738           91 VLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVS--QGNVDVVKILTR-EDPGYPYSAN----NYGKTPLY  163 (401)
Q Consensus        91 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~-~~~~~~~~~~----~~~~t~l~  163 (401)
                      +|++.|++..                .+..+..+.+||+.++.  +++.+++++|++ .+.++....+    ..|.+|++
T Consensus        97 ~Ll~~~~~~~----------------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~y  160 (672)
T PHA02730         97 LLISSYSNAS----------------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIY  160 (672)
T ss_pred             HHHhcCCCCC----------------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhh
Confidence            9999987542                23456678899999888  899999999997 4444332222    36889999


Q ss_pred             HHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCc-------cCCCCC-CcHHhHHHhh---cc-cccchHHHHHHh
Q 015738          164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVS-------HEGPNG-KTALHAAAMR---SF-AVDTALPKLLEK  231 (401)
Q Consensus       164 ~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~-------~~~~~~-~t~l~~a~~~---~~-~~~~~~~~ll~~  231 (401)
                      ++..                .+..+++++|+++|++++       ..+... .|.||+++..   .. ...+.++.|+.+
T Consensus       161 l~~~----------------~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~  224 (672)
T PHA02730        161 VTTP----------------NPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDN  224 (672)
T ss_pred             HhcC----------------CCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHC
Confidence            9988                449999999999999995       122333 3455544443   11 345666666666


Q ss_pred             hcccccccccCCCcHHHH--HHHcCCHHHHHHHHh--------------------------------cCccccc------
Q 015738          232 KKNLIKETDQYGWTPIHY--AAYYGNYRTVNLLLE--------------------------------TDQSASN------  271 (401)
Q Consensus       232 ~~~~~~~~~~~~~t~L~~--a~~~~~~~~~~~Ll~--------------------------------~~~~~~~------  271 (401)
                      + .+++.+|..|.||||+  +...|+.+++++|++                                .|.+...      
T Consensus       225 G-adIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  303 (672)
T PHA02730        225 N-VSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIE  303 (672)
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhh
Confidence            5 5699999999999995  555677999999999                                5555421      


Q ss_pred             --------c----ccCCCCch---------------------HHHHHHhcC---CHHHHHHhhhcCCCCccccCCCCCcH
Q 015738          272 --------I----ADKDRKMT---------------------ALHLAAGKG---DARTVERIISGNPKCYELVDNRGCNF  315 (401)
Q Consensus       272 --------~----~~~~~g~t---------------------~L~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~t~  315 (401)
                              .    .-...|.+                     .||.-...+   +.+++++|+++|++ ++.. ..|+||
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAd-IN~k-~~G~Tp  381 (672)
T PHA02730        304 GRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGAT-MDKT-TDNNYP  381 (672)
T ss_pred             ccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCC-CCcC-CCCCcH
Confidence                    0    01113332                     566666655   69999999999998 5654 789999


Q ss_pred             HHHHHHhCC----hhHHHHHHhcCCcccc--ccccCCCCCCcHHHH---HHHhC---------ChhHHHHHHhhcCCChh
Q 015738          316 LHYAMVSFH----VGQLRNLLENNPLARS--LIDEGDAEGNTPLHV---LAAVR---------PKEFHDVMNRSTQANYD  377 (401)
Q Consensus       316 l~~A~~~~~----~~~~~~Ll~~~~~~~~--~~~~~~~~g~t~L~~---A~~~~---------~~~~~~~Ll~~~~~~~~  377 (401)
                      ||+|+..++    .+++++|++    .|+  ++|.+|..|.||||.   |...+         ..+++++|+.. |+|++
T Consensus       382 LH~Aa~~nnn~i~~eIvelLIs----~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GADIN  456 (672)
T PHA02730        382 LHDYFVNNNNIVDVNVVRFIVE----NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY-MDDID  456 (672)
T ss_pred             HHHHHHHcCCcchHHHHHHHHH----cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc-ccchh
Confidence            999998875    899999999    666  699999999999994   33232         12468888865 99999


Q ss_pred             hhhccCcceeeeeec
Q 015738          378 AVNKQNVSVRHVFNY  392 (401)
Q Consensus       378 ~~~~~g~t~l~~a~~  392 (401)
                      .+|..|+|||++|..
T Consensus       457 akD~~G~TPLh~Aa~  471 (672)
T PHA02730        457 MIDNENKTLLYYAVD  471 (672)
T ss_pred             ccCCCCCCHHHHHHH
Confidence            999999999999943

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-42  Score=310.60  Aligned_cols=329  Identities=19%  Similarity=0.141  Sum_probs=261.1

Q ss_pred             hhhhhhcCCCCchhhhhhH-HHHH---HHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHH
Q 015738            5 FFKAASAGNSEPFKDMERD-VIER---LLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA   80 (401)
Q Consensus         5 l~~A~~~g~~~~~~~ll~~-~~~~---~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A   80 (401)
                      |+.++...+.+-+...++. .-..   ...+..+.||||+|  +..|+.+++++|++    .|++++..|..|.||||+|
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A--~~~g~~e~vk~Ll~----~gadvn~~d~~g~TpLh~A   77 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQA--VEARNLDVVKSLLT----RGHNVNQPDHRDLTPLHII   77 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHH
Confidence            5666666665445555543 1111   11223478999999  99999999999998    7999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 015738           81 AKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKT  160 (401)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t  160 (401)
                      |..|+.+++++|++.+....                    ...+.+|++.|+..++.+++++|+..+.......+     
T Consensus        78 ~~~g~~~~v~~Ll~~~~~~~--------------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~-----  132 (477)
T PHA02878         78 CKEPNKLGMKEMIRSINKCS--------------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID-----  132 (477)
T ss_pred             HHCccHhHHHHHHHHHhccc--------------------cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc-----
Confidence            99999999999999876531                    14578999999999999999999987544221111     


Q ss_pred             HHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCC-CCcHHhHHHhhcccccchHHHHHHhhccccccc
Q 015738          161 PLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPN-GKTALHAAAMRSFAVDTALPKLLEKKKNLIKET  239 (401)
Q Consensus       161 ~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~  239 (401)
                       +........           ......+++++|++.|++++..+.. |.||||+|+..  ++.+.++.|+..+.. ++..
T Consensus       133 -~~~~~~~~~-----------~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~--~~~~iv~~Ll~~gad-~n~~  197 (477)
T PHA02878        133 -LVYIDKKSK-----------DDIIEAEITKLLLSYGADINMKDRHKGNTALHYATEN--KDQRLTELLLSYGAN-VNIP  197 (477)
T ss_pred             -HHHHhhccc-----------hhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhC--CCHHHHHHHHHCCCC-CCCc
Confidence             111111000           1112356999999999999999998 99999999998  889999999887654 7889


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhc-CCHHHHHHhhhcCCCCccccCC-CCCcHHH
Q 015738          240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGK-GDARTVERIISGNPKCYELVDN-RGCNFLH  317 (401)
Q Consensus       240 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~  317 (401)
                      +..|.||||.|+..|+.+++++|++.|+++ +..+. .|.||||+|+.. ++.+++++|+++|++ ++.++. .|.||||
T Consensus       198 d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~-~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh  274 (477)
T PHA02878        198 DKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDK-CGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALH  274 (477)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHH
Confidence            999999999999999999999999999987 44444 899999999976 689999999999998 566665 7999999


Q ss_pred             HHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhC-ChhHHHHHHhh----cCCChhhhhccCcceee
Q 015738          318 YAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVR-PKEFHDVMNRS----TQANYDAVNKQNVSVRH  388 (401)
Q Consensus       318 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~----~~~~~~~~~~~g~t~l~  388 (401)
                      +|  .++.+++++|++    .|+++|.+|..|.||||+|+..+ ..++.+.|+..    .+.+++.++..|.++-.
T Consensus       275 ~A--~~~~~~v~~Ll~----~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~  344 (477)
T PHA02878        275 SS--IKSERKLKLLLE----YGADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNM  344 (477)
T ss_pred             HH--ccCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHH
Confidence            99  577899999999    89999999999999999999754 45666666543    35778888888866543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8e-42  Score=308.29  Aligned_cols=293  Identities=18%  Similarity=0.170  Sum_probs=234.3

Q ss_pred             chHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHH
Q 015738           50 VSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH  129 (401)
Q Consensus        50 ~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  129 (401)
                      ++.+++.. +...+...+..+..+.||||+||..|+.++|++|+++|+++                  +..+..|.||||
T Consensus        15 ~i~~~i~~-~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv------------------n~~d~~g~TpLh   75 (477)
T PHA02878         15 TILKYIEY-IDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV------------------NQPDHRDLTPLH   75 (477)
T ss_pred             HHHHHHHH-HhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHH
Confidence            34444433 33344444555678999999999999999999999999984                  677889999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCc
Q 015738          130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKT  209 (401)
Q Consensus       130 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  209 (401)
                      +|+..|+.+++++|++.+.....   ..+.+|++.|+.                .++.++++.|+..+.+.....  ...
T Consensus        76 ~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~----------------~~~~ei~~~Ll~~~~~~~~~~--~~~  134 (477)
T PHA02878         76 IICKEPNKLGMKEMIRSINKCSV---FYTLVAIKDAFN----------------NRNVEIFKIILTNRYKNIQTI--DLV  134 (477)
T ss_pred             HHHHCccHhHHHHHHHHHhcccc---ccchhhHHHHHH----------------cCCHHHHHHHHhCcccCcccC--cHH
Confidence            99999999999999998765332   567899999998                348999999998765432211  001


Q ss_pred             HHhHHHhhcccccchHHHHHHhhcccccccccC-CCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhc
Q 015738          210 ALHAAAMRSFAVDTALPKLLEKKKNLIKETDQY-GWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGK  288 (401)
Q Consensus       210 ~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~  288 (401)
                      .+...........+.++.|+..+ .+++..+.. |.||||+|+..|+.+++++|++.|+++ +..+. .|.||||.|+..
T Consensus       135 ~~~~~~~~~~~~~~iv~~Ll~~g-adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~-~g~tpLh~A~~~  211 (477)
T PHA02878        135 YIDKKSKDDIIEAEITKLLLSYG-ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDK-TNNSPLHHAVKH  211 (477)
T ss_pred             HHhhccchhhHHHHHHHHHHHcC-CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHh
Confidence            11111111001234666666654 558888888 999999999999999999999999987 44444 799999999999


Q ss_pred             CCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHh-CChhHHHHHHhcCCccccccccCCC-CCCcHHHHHHHhCChhHHH
Q 015738          289 GDARTVERIISGNPKCYELVDNRGCNFLHYAMVS-FHVGQLRNLLENNPLARSLIDEGDA-EGNTPLHVLAAVRPKEFHD  366 (401)
Q Consensus       289 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~  366 (401)
                      ++.+++++|++.|++ ++.+|..|+||||+|+.. ++.+++++|++    .|++++.++. .|.||||+|  .++.++++
T Consensus       212 ~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~----~gadvn~~~~~~g~TpLh~A--~~~~~~v~  284 (477)
T PHA02878        212 YNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLE----HGVDVNAKSYILGLTALHSS--IKSERKLK  284 (477)
T ss_pred             CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHH----cCCCCCccCCCCCCCHHHHH--ccCHHHHH
Confidence            999999999999988 788999999999999976 78999999999    8999999986 799999999  56788999


Q ss_pred             HHHhhcCCChhhhhccCcceeeeeecc
Q 015738          367 VMNRSTQANYDAVNKQNVSVRHVFNYG  393 (401)
Q Consensus       367 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~  393 (401)
                      +|++. |+|++.+|..|.||+++|...
T Consensus       285 ~Ll~~-gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        285 LLLEY-GADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             HHHHC-CCCCCCcCCCCCCHHHHHHHH
Confidence            99866 999999999999999999653

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-41  Score=308.38  Aligned_cols=284  Identities=22%  Similarity=0.216  Sum_probs=251.8

Q ss_pred             CCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHH-----HHHcCCHH
Q 015738           13 NSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHL-----AAKFGHFE   87 (401)
Q Consensus        13 ~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~-----A~~~~~~~   87 (401)
                      ..++++++++.+-.....+..+.||||+|  +..++.+++++|++    .|++++..+..|.||||+     |+..|+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A--~~~~~~~ivk~Ll~----~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~   87 (480)
T PHA03100         14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLA--KEARNIDVVKILLD----NGADINSSTKNNSTPLHYLSNIKYNLTDVKE   87 (480)
T ss_pred             HHHHHHHHHhcCccchhhhcccchhhhhh--hccCCHHHHHHHHH----cCCCCCCccccCcCHHHHHHHHHHHhhchHH
Confidence            34667777776544445666799999999  99999999999998    799999999999999999     99999999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHH--HcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 015738           88 IVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV--SQGNVDVVKILTREDPGYPYSANNYGKTPLYMA  165 (401)
Q Consensus        88 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  165 (401)
                      ++++|+++|+++                  +..+..|.||||+|+  ..|+.+++++|+++|++. ...+..|.||||+|
T Consensus        88 iv~~Ll~~ga~i------------------~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A  148 (480)
T PHA03100         88 IVKLLLEYGANV------------------NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLY  148 (480)
T ss_pred             HHHHHHHCCCCC------------------CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHH
Confidence            999999999984                  567788999999999  999999999999999985 47788999999999


Q ss_pred             HhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCC--
Q 015738          166 AEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYG--  243 (401)
Q Consensus       166 ~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~--  243 (401)
                      +..+              ..+.+++++|++.|++++..+..|.||||+|+..  ++.+.++.|++.+.. ++..+..+  
T Consensus       149 ~~~~--------------~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~--~~~~iv~~Ll~~ga~-~~~~~~~~~~  211 (480)
T PHA03100        149 LESN--------------KIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK--GNIDVIKFLLDNGAD-INAGDIETLL  211 (480)
T ss_pred             HHcC--------------CChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh--CCHHHHHHHHHcCCC-ccCCCCCCCc
Confidence            9822              1278999999999999999999999999999999  888999988887654 66777777  


Q ss_pred             ----CcHHHHHHHcCC--HHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHH
Q 015738          244 ----WTPIHYAAYYGN--YRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLH  317 (401)
Q Consensus       244 ----~t~L~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  317 (401)
                          .||||.|+..|+  .+++++|++.|+++ +..+ ..|.||||.|+..++.+++++|++.|++ ++.+|..|.||++
T Consensus       212 ~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d-~~g~TpL~~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpl~  288 (480)
T PHA03100        212 FTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKD-VYGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLH  288 (480)
T ss_pred             HHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHH
Confidence                899999999999  99999999999887 4444 4899999999999999999999999996 7899999999999


Q ss_pred             HHHHhCChhHHHHHHhcCCccccccccC
Q 015738          318 YAMVSFHVGQLRNLLENNPLARSLIDEG  345 (401)
Q Consensus       318 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  345 (401)
                      +|+..++.+++++|++    .|++++..
T Consensus       289 ~A~~~~~~~iv~~Ll~----~g~~i~~i  312 (480)
T PHA03100        289 IAILNNNKEIFKLLLN----NGPSIKTI  312 (480)
T ss_pred             HHHHhCCHHHHHHHHh----cCCCHHHH
Confidence            9999999999999999    67776653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.7e-43  Score=324.64  Aligned_cols=356  Identities=27%  Similarity=0.334  Sum_probs=301.3

Q ss_pred             hhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHc
Q 015738            4 NFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF   83 (401)
Q Consensus         4 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~   83 (401)
                      .++.|+.+++.+.++.++....+....+..|.||||.|  +..+..++++.++.    .|+++...|..|.||||.|+..
T Consensus       179 ~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a--~~~nri~~~eLll~----~gadv~a~d~~gl~~lh~a~~~  252 (1143)
T KOG4177|consen  179 RLHVAAHCGHARVAKLLLDKKADPNASALNGFTPLHIA--CKKNRIKVVELLLK----HGADVSAKDESGLTPLHVAAFM  252 (1143)
T ss_pred             hhhHHhhcchHHHHhhhhcccCCccccccCCCCchhhh--ccccccceeeeeee----ccCcCCcccccCccHHHHHHhc
Confidence            46889999999999999999888888888899999999  99999999999988    8999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC------------
Q 015738           84 GHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP------------  151 (401)
Q Consensus        84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~------------  151 (401)
                      |+.+++++|+.+|+..                  +..+..|.||+|+|++.+..+++++|+++|.+..            
T Consensus       253 g~~~i~~~l~~~ga~~------------------~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~  314 (1143)
T KOG4177|consen  253 GHLDIVKLLLQHGASV------------------NVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHI  314 (1143)
T ss_pred             cchhHHHHHHhccccc------------------CcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhh
Confidence            9999999999999985                  4556677777777777777777777777776642            


Q ss_pred             --------------------CCCCCCCCCHHHHHHhcCCchhHHHhhhh------------------hccCCCHHHHHHH
Q 015738          152 --------------------YSANNYGKTPLYMAAEYENRSDMLRGLLE------------------NRTSASFDMVLAL  193 (401)
Q Consensus       152 --------------------~~~~~~~~t~l~~a~~~~~~~~~~~~l~~------------------~~~~~~~~~~~~L  193 (401)
                                          ...+..+.+|+|+++..+..+ +...+..                  ...++..+.++.+
T Consensus       315 a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~-~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Ll  393 (1143)
T KOG4177|consen  315 ASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVE-VAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELL  393 (1143)
T ss_pred             hcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHH-HHHHhhccccccCcccccCCcchhhhcccCchhHHHhh
Confidence                                233445556666665543333 2222221                  1235688999999


Q ss_pred             HhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcC-CHHHHHHHHhcCcccccc
Q 015738          194 LENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYG-NYRTVNLLLETDQSASNI  272 (401)
Q Consensus       194 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~-~~~~~~~Ll~~~~~~~~~  272 (401)
                      +..|++++..+..|.||+|.++..  ++...++.++..+.. .+..+..|.||+|+|+..| ..++...+++.+.+++ .
T Consensus       394 l~~ga~~~~~gk~gvTplh~aa~~--~~~~~v~l~l~~gA~-~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n-~  469 (1143)
T KOG4177|consen  394 LEAGADPNSAGKNGVTPLHVAAHY--GNPRVVKLLLKRGAS-PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPN-A  469 (1143)
T ss_pred             hhccCCcccCCCCCcceeeehhhc--cCcceEEEEeccCCC-hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcc-h
Confidence            999999999999999999999988  778888877776554 7888899999999999999 8899999999998884 3


Q ss_pred             ccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcH
Q 015738          273 ADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTP  352 (401)
Q Consensus       273 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~  352 (401)
                      ... .|.||||.|...|+.+++..+++.+.. .+.....+-+++|.|...+...+++.+++    .|++++.++..|.||
T Consensus       470 ~s~-~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~~~~v~~~~~l~~----~ga~v~~~~~r~~Tp  543 (1143)
T KOG4177|consen  470 VSK-QGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAADEDTVKVAKILLE----HGANVDLRTGRGYTP  543 (1143)
T ss_pred             hcc-ccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhhhhhHHHHHHHhh----cCCceehhcccccch
Confidence            333 789999999999999999999998855 56677889999999999999999999999    899999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee-eccce
Q 015738          353 LHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF-NYGYT  395 (401)
Q Consensus       353 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~  395 (401)
                      ||+|+.+|+.++|++||++ |+|++.+++.|+||||.| .+|..
T Consensus       544 Lh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G~~  586 (1143)
T KOG4177|consen  544 LHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQGHN  586 (1143)
T ss_pred             HHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcChH
Confidence            9999999999999999977 999999999999999999 55543

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.6e-41  Score=306.97  Aligned_cols=334  Identities=17%  Similarity=0.152  Sum_probs=237.5

Q ss_pred             hhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccC---CC------
Q 015738            3 LNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNA---KG------   73 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~g------   73 (401)
                      ++++.|+..|+.++|++|+++|++.+..+..|.||||+|+.+..|+.+++++|++    .|++++..|.   .|      
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~----~Ga~vn~~d~~~~~g~~~~~~  180 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE----NGCSVLYEDEDDEYGYAYDDY  180 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH----cCCCccccccccccccccccc
Confidence            3455666666777777777777777766666777777442244667777777777    5666654432   23      


Q ss_pred             -----CcHHHHHHH-----------cCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCH
Q 015738           74 -----DTPLHLAAK-----------FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNV  137 (401)
Q Consensus        74 -----~t~L~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  137 (401)
                           .||||+|+.           .++.++|++|+++|++                  ++..|.+|.||||+|+..|+.
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad------------------vn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK------------------PSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC------------------cccCCCCCCcHHHHHHHcCCC
Confidence                 377777765           3466777777777776                  467889999999999999985


Q ss_pred             --HHHHHHHhcCCCCC---CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCcc-------C--
Q 015738          138 --DVVKILTREDPGYP---YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSH-------E--  203 (401)
Q Consensus       138 --~~~~~Ll~~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~-------~--  203 (401)
                        +++++|++ |++..   ...+..+.+|+++++..++..       ........++++.|++.|++...       .  
T Consensus       243 ~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~-------~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~  314 (661)
T PHA02917        243 DIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDY-------RYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRN  314 (661)
T ss_pred             cHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhc-------cccccchHHHHHHHHhCCCCCceeEeeeccccc
Confidence              79999985 76543   245667888888888421100       00112267888888888876321       1  


Q ss_pred             ----------CCCCCcHHhHHHhh-cccc--cchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHh-cCccc
Q 015738          204 ----------GPNGKTALHAAAMR-SFAV--DTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE-TDQSA  269 (401)
Q Consensus       204 ----------~~~~~t~l~~a~~~-~~~~--~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~  269 (401)
                                ...+.+++|.+... .++.  .+.++.|+..+.. ++.++..|.++.    ...+.+++++|+. .|++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAd-vn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~  389 (661)
T PHA02917        315 DKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAV-VNKEAIHGYFRN----INIDSYTMKYLLKKEGGDA  389 (661)
T ss_pred             chHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCC-CCCCCccccchh----hcCCHHHHHHHHHhcCCCc
Confidence                      11233344433321 0133  3467777766655 778888888754    3567888888887 56665


Q ss_pred             cccccCCCCchHHHHHHhcC-----------------------CHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChh
Q 015738          270 SNIADKDRKMTALHLAAGKG-----------------------DARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVG  326 (401)
Q Consensus       270 ~~~~~~~~g~t~L~~a~~~~-----------------------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  326 (401)
                      .. .+. .|.||||.|++.+                       ..+++++|+++|++ ++.+|..|+||||+|+..++.+
T Consensus       390 ~~-~~~-~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAd-IN~kd~~G~TpLh~Aa~~~~~~  466 (661)
T PHA02917        390 VN-HLD-DGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKD-INMIDKRGETLLHKAVRYNKQS  466 (661)
T ss_pred             cc-cCC-CCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCC-CCCCCCCCcCHHHHHHHcCCHH
Confidence            33 343 5999999987543                       35678999999998 7899999999999999999999


Q ss_pred             HHHHHHhcCCccccccccCCCCCCcHHHHHHH-hCChhHHHHHHhhcCCChhhh
Q 015738          327 QLRNLLENNPLARSLIDEGDAEGNTPLHVLAA-VRPKEFHDVMNRSTQANYDAV  379 (401)
Q Consensus       327 ~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~~~~~~~~~  379 (401)
                      ++++|++    .|++++.++..|.||||+|+. .++.+++++|+.. |++++..
T Consensus       467 ~v~~Ll~----~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~-ga~i~~i  515 (661)
T PHA02917        467 LVSLLLE----SGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCH-KPTLDCV  515 (661)
T ss_pred             HHHHHHH----CcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHc-CCChhHH
Confidence            9999999    899999999999999999996 6789999999966 8988743

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-39  Score=294.77  Aligned_cols=281  Identities=17%  Similarity=0.155  Sum_probs=233.2

Q ss_pred             chhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHc--CCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhcc
Q 015738           44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF--GHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVN  121 (401)
Q Consensus        44 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (401)
                      +.....+++++|++    .|++++.. ..|.||||.++..  ++.++|++|+++|+++                  +..+
T Consensus        11 ~~~~~~~~v~~LL~----~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv------------------n~~~   67 (494)
T PHA02989         11 SDTVDKNALEFLLR----TGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV------------------NYKG   67 (494)
T ss_pred             CCcCcHHHHHHHHH----cCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc------------------cCCC
Confidence            34578899999988    79999988 6799999766654  3789999999999985                  3333


Q ss_pred             CCCChHHHHHHHcC------CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHh
Q 015738          122 NEKNTALHEAVSQG------NVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLE  195 (401)
Q Consensus       122 ~~g~t~L~~A~~~~------~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~  195 (401)
                       .+.||||.|+.++      +.+++++|+++|+++. ..+..|.|||+.|+...             ..++.+++++|++
T Consensus        68 -~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~-------------~~~~~eiv~~Ll~  132 (494)
T PHA02989         68 -YIETPLCAVLRNREITSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNS-------------NINNCDMLRFLLS  132 (494)
T ss_pred             -CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhc-------------ccCcHHHHHHHHH
Confidence             4689999998754      4789999999999954 77888999999887521             1347899999999


Q ss_pred             cCCCC-ccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccc-cccCCCcHHHHHHHcC----CHHHHHHHHhcCccc
Q 015738          196 NSTSV-SHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKE-TDQYGWTPIHYAAYYG----NYRTVNLLLETDQSA  269 (401)
Q Consensus       196 ~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~t~L~~a~~~~----~~~~~~~Ll~~~~~~  269 (401)
                      +|+++ +..+..|.||||+|+....++.+.++.|++.+.. ++. .+..|.||||+|++.+    +.+++++|++.|++.
T Consensus       133 ~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v  211 (494)
T PHA02989        133 KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI  211 (494)
T ss_pred             CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc
Confidence            99999 7899999999999987643567888888877655 554 6778999999988764    899999999999987


Q ss_pred             cccccCCCCchHHHHHHhc------CCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccc
Q 015738          270 SNIADKDRKMTALHLAAGK------GDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLID  343 (401)
Q Consensus       270 ~~~~~~~~g~t~L~~a~~~------~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  343 (401)
                      + ..+. .+.+|||.++..      +..+++++|+. +++ ++.+|..|+||||+|+..++.+++++|++    .|++++
T Consensus       212 n-~~~~-~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~----~Gadin  283 (494)
T PHA02989        212 E-TNNN-GSESVLESFLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLK----LGDDIY  283 (494)
T ss_pred             c-ccCC-ccccHHHHHHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHH----cCCCcc
Confidence            3 3333 688999987654      35678887665 555 78999999999999999999999999999    899999


Q ss_pred             cCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          344 EGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       344 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      .+|..|.||||+|+..++.++++.||+.
T Consensus       284 ~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        284 NVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999999999976

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.8e-40  Score=295.79  Aligned_cols=283  Identities=16%  Similarity=0.130  Sum_probs=237.8

Q ss_pred             hcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcC-----
Q 015738           10 SAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG-----   84 (401)
Q Consensus        10 ~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-----   84 (401)
                      ...+.++|++|+++|++.+.. ..|.|+||.++....++.+++++|++    .|++++.++ .+.||||.|+.++     
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~----~GAdvn~~~-~~~tpL~~a~~~~~~~~~   85 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLID----NGADVNYKG-YIETPLCAVLRNREITSN   85 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHH----cCCCccCCC-CCCCcHHHHHhccCcchh
Confidence            357899999999999988877 45999998762133457899999999    799999876 6799999998764     


Q ss_pred             -CHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCC
Q 015738           85 -HFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQ---GNVDVVKILTREDPGYPYSANNYGKT  160 (401)
Q Consensus        85 -~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~t  160 (401)
                       +.++|++|+++|+++                  +.++..|.||||.|+..   ++.+++++|+++|+++....+..|.|
T Consensus        86 ~~~~iv~~Ll~~Gadi------------------n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         86 KIKKIVKLLLKFGADI------------------NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             hHHHHHHHHHHCCCCC------------------CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence             478999999999994                  67788999999998765   68999999999999974678899999


Q ss_pred             HHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCcc-CCCCCCcHHhHHHhhc--ccccchHHHHHHhhccccc
Q 015738          161 PLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSH-EGPNGKTALHAAAMRS--FAVDTALPKLLEKKKNLIK  237 (401)
Q Consensus       161 ~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~--~~~~~~~~~ll~~~~~~~~  237 (401)
                      |||+|+.              ...++.+++++|++.|++++. .+..|.||||.|+...  .++.+.++.|+..+.. ++
T Consensus       148 pLh~a~~--------------~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn  212 (494)
T PHA02989        148 LLHMYLE--------------SFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IE  212 (494)
T ss_pred             HHHHHHH--------------hccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-cc
Confidence            9999986              334578999999999999988 6789999999998762  1366778888877654 78


Q ss_pred             ccccCCCcHHHHHHHc------CCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCC
Q 015738          238 ETDQYGWTPIHYAAYY------GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNR  311 (401)
Q Consensus       238 ~~~~~~~t~L~~a~~~------~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  311 (401)
                      ..+..+.||||.++..      +..+++++|+. +++. +..+. .|.||||+|+..++.+++++|++.|++ ++.+|..
T Consensus       213 ~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~adv-n~~d~-~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~  288 (494)
T PHA02989        213 TNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKI-NKKDK-KGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKD  288 (494)
T ss_pred             ccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCC-CCCCC-CCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCC
Confidence            8888899999987654      35778887765 5665 44444 899999999999999999999999998 7899999


Q ss_pred             CCcHHHHHHHhCChhHHHHHHhcC
Q 015738          312 GCNFLHYAMVSFHVGQLRNLLENN  335 (401)
Q Consensus       312 g~t~l~~A~~~~~~~~~~~Ll~~~  335 (401)
                      |+||||+|+..++.++++.|++..
T Consensus       289 G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        289 GDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999943

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.8e-39  Score=263.23  Aligned_cols=232  Identities=16%  Similarity=0.105  Sum_probs=204.3

Q ss_pred             cCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 015738           83 FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPL  162 (401)
Q Consensus        83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  162 (401)
                      .++.+++++|+++|++                    ..|..|.||||+|+..|+.+++++|+++|++... .  .+.|||
T Consensus         9 ~~~~~~~~~Lis~~a~--------------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~-~--d~~TpL   65 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--------------------KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPL   65 (284)
T ss_pred             cCHHHHHHHHHhCCCC--------------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC-C--CCCCHH
Confidence            4688999999998875                    4578899999999999999999999999987542 3  478999


Q ss_pred             HHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccC
Q 015738          163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQY  242 (401)
Q Consensus       163 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~  242 (401)
                      |+|+.                .++.++++.|++.|++++..+..|.||||+|+..  ++.+.++.|+..+.. ++..+..
T Consensus        66 h~Aa~----------------~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~--g~~eivk~Ll~~gad-in~~~~~  126 (284)
T PHA02791         66 HQAAT----------------LEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS--GNMQTVKLFVKKNWR-LMFYGKT  126 (284)
T ss_pred             HHHHH----------------CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCC-cCccCCC
Confidence            99998                3489999999999999999999999999999999  889999999887654 6667776


Q ss_pred             C-CcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcH-HHHHH
Q 015738          243 G-WTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNF-LHYAM  320 (401)
Q Consensus       243 ~-~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~A~  320 (401)
                      | .||||+|+..|+.+++++|++.++...   +...|.||||+|+..|+.+++++|+++|++ ++.++..|.|| ||+|+
T Consensus       127 g~~TpL~~Aa~~g~~eivk~LL~~~~~~~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa  202 (284)
T PHA02791        127 GWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAI  202 (284)
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCccc---ccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHH
Confidence            6 589999999999999999999875431   212578999999999999999999999988 68899999987 99999


Q ss_pred             HhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          321 VSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       321 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      ..++.+++++|++    .|+++|.+|..| |||      +..+++++||++
T Consensus       203 ~~~~~e~v~lLl~----~Ga~in~~~~~~-~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        203 DNKDLEMLQALFK----YDINIYSVNLEN-VLL------DDAEIAKMIIEK  242 (284)
T ss_pred             HcCCHHHHHHHHH----CCCCCccCcccC-ccC------CCHHHHHHHHHh
Confidence            9999999999999    899999999855 666      889999999977

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-38  Score=259.96  Aligned_cols=215  Identities=26%  Similarity=0.332  Sum_probs=185.3

Q ss_pred             hhhhhcCCCCchhhhhhH-----HHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhc--------ccCC
Q 015738            6 FKAASAGNSEPFKDMERD-----VIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQ--------VNAK   72 (401)
Q Consensus         6 ~~A~~~g~~~~~~~ll~~-----~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~   72 (401)
                      ..|++.|++..++.|+.+     -.+......+|.|||.+|  +++|+.++|++|++..   ++++..        ....
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~ia--aRnGH~~vVeyLle~~---~a~~e~~GsV~FDge~Ie   83 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIA--ARNGHADVVEYLLEHC---RASPEQGGSVRFDGETIE   83 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeee--hhcCcHHHHHHHHHHh---cCCccCCceEEeCCcccC
Confidence            478999999998888875     122223445689999999  9999999999998864   333332        3456


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 015738           73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPY  152 (401)
Q Consensus        73 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  152 (401)
                      |-+||..|+..|++++|+.|+++|++.                  +.......|||--||..|+.+++++|+++|+++ .
T Consensus        84 gappLWaAsaAGHl~vVk~L~~~ga~V------------------N~tT~TNStPLraACfDG~leivKyLvE~gad~-~  144 (615)
T KOG0508|consen   84 GAPPLWAASAAGHLEVVKLLLRRGASV------------------NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-E  144 (615)
T ss_pred             CCchhhHHhccCcHHHHHHHHHhcCcc------------------ccccccCCccHHHHHhcchhHHHHHHHHcCCCC-c
Confidence            889999999999999999999999884                  566667889999999999999999999999995 5


Q ss_pred             CCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhh
Q 015738          153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK  232 (401)
Q Consensus       153 ~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~  232 (401)
                      ..++.|.|+|+.|+.              +  ++.+++++|++.|+|+|.++..|+|+||.++..  ++.++++.|+..+
T Consensus       145 IanrhGhTcLmIa~y--------------k--Gh~~I~qyLle~gADvn~ks~kGNTALH~caEs--G~vdivq~Ll~~g  206 (615)
T KOG0508|consen  145 IANRHGHTCLMIACY--------------K--GHVDIAQYLLEQGADVNAKSYKGNTALHDCAES--GSVDIVQLLLKHG  206 (615)
T ss_pred             ccccCCCeeEEeeec--------------c--CchHHHHHHHHhCCCcchhcccCchHHHhhhhc--ccHHHHHHHHhCC
Confidence            889999999999998              3  399999999999999999999999999999999  9999999999887


Q ss_pred             cccccccccCCCcHHHHHHHcCCHHHHHHHHh
Q 015738          233 KNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE  264 (401)
Q Consensus       233 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~  264 (401)
                      ...  ..|.+|.|||..|...|..++|++|++
T Consensus       207 a~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  207 AKI--DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cee--eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            653  356779999999999999999999995

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.1e-38  Score=257.23  Aligned_cols=236  Identities=18%  Similarity=0.207  Sum_probs=200.9

Q ss_pred             hhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCC
Q 015738           46 ERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN  125 (401)
Q Consensus        46 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  125 (401)
                      .++.+++++|.+    .++  +..|.+|.||||+|+..|+.+++++|+++|++.                  +..  +|.
T Consensus         9 ~~~~~~~~~Lis----~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~------------------n~~--d~~   62 (284)
T PHA02791          9 WKSKQLKSFLSS----KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALK------------------NLL--ENE   62 (284)
T ss_pred             cCHHHHHHHHHh----CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC------------------cCC--CCC
Confidence            467788889988    455  467999999999999999999999999999874                  222  468


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCC
Q 015738          126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGP  205 (401)
Q Consensus       126 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~  205 (401)
                      ||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+.                .++.++++.|++.|++++..+.
T Consensus        63 TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~----------------~g~~eivk~Ll~~gadin~~~~  125 (284)
T PHA02791         63 FPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVD----------------SGNMQTVKLFVKKNWRLMFYGK  125 (284)
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH----------------cCCHHHHHHHHHCCCCcCccCC
Confidence            9999999999999999999999885 4788899999999998                4489999999999999999888


Q ss_pred             CCC-cHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchH-HH
Q 015738          206 NGK-TALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA-LH  283 (401)
Q Consensus       206 ~~~-t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~-L~  283 (401)
                      .|. ||||+|+..  ++.+.++.|+..++...+.  ..|.||||+|+..|+.+++++|+++|+++ +..+. .|.|| ||
T Consensus       126 ~g~~TpL~~Aa~~--g~~eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~-~g~t~~L~  199 (284)
T PHA02791        126 TGWKTSFYHAVML--NDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTST-NTNNS-LLFIPDIK  199 (284)
T ss_pred             CCCcHHHHHHHHc--CCHHHHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccC-CCCChHHH
Confidence            874 899999998  8899999999875432211  35899999999999999999999999987 44444 56665 99


Q ss_pred             HHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCcc
Q 015738          284 LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLA  338 (401)
Q Consensus       284 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  338 (401)
                      +|+..|+.+++++|+++|++ ++.+|..| ++|      ++.|++++||++....
T Consensus       200 ~Aa~~~~~e~v~lLl~~Ga~-in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        200 LAIDNKDLEMLQALFKYDIN-IYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCC-CccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            99999999999999999998 68888855 555      8899999999954443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-38  Score=279.34  Aligned_cols=241  Identities=20%  Similarity=0.251  Sum_probs=218.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccC
Q 015738          124 KNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHE  203 (401)
Q Consensus       124 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~  203 (401)
                      .+++||.|+..|+.+++++|+++|++.. ..+..|.||||+|+.                .++.+++++|++.|++++..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~----------------~~~~~~v~~Ll~~ga~~~~~   64 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMK----------------FRDSEAIKLLMKHGAIPDVK   64 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHH----------------cCCHHHHHHHHhCCCCcccc
Confidence            5789999999999999999999998854 667789999999998                34899999999999999998


Q ss_pred             CCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHH
Q 015738          204 GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH  283 (401)
Q Consensus       204 ~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~  283 (401)
                      +..+.||||.|+..  ++.+.++.++..+....+..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||
T Consensus        65 ~~~~~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~-~g~tpLh  140 (413)
T PHA02875         65 YPDIESELHDAVEE--GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNT-DKFSPLH  140 (413)
T ss_pred             CCCcccHHHHHHHC--CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCC-CCCCHHH
Confidence            89999999999999  99999999999887655666778999999999999999999999999987 44443 7899999


Q ss_pred             HHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCC-cHHHHHHHhCCh
Q 015738          284 LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN-TPLHVLAAVRPK  362 (401)
Q Consensus       284 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~  362 (401)
                      .|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++    .|++++..+..|. ||+|+|+..++.
T Consensus       141 ~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~----~ga~~n~~~~~~~~t~l~~A~~~~~~  215 (413)
T PHA02875        141 LAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLD----SGANIDYFGKNGCVAALCYAIENNKI  215 (413)
T ss_pred             HHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCcCCCCCCchHHHHHHHcCCH
Confidence            99999999999999999987 68899999999999999999999999999    8999999998874 899999999999


Q ss_pred             hHHHHHHhhcCCChhhh---hccCcceeeeee
Q 015738          363 EFHDVMNRSTQANYDAV---NKQNVSVRHVFN  391 (401)
Q Consensus       363 ~~~~~Ll~~~~~~~~~~---~~~g~t~l~~a~  391 (401)
                      +++++|+.. |+|++..   +..|.||++++.
T Consensus       216 ~iv~~Ll~~-gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        216 DIVRLFIKR-GADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             HHHHHHHHC-CcCcchHhhcCCCchHHHHHHH
Confidence            999999966 9999876   677889998763

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-37  Score=275.32  Aligned_cols=255  Identities=19%  Similarity=0.218  Sum_probs=212.0

Q ss_pred             CCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhh
Q 015738           34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF  113 (401)
Q Consensus        34 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  113 (401)
                      .+++||.|  +..|+.+++++|++    .|++++..+..|.||||+|+..|+.+++++|+++|+++              
T Consensus         2 ~~~~L~~A--~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--------------   61 (413)
T PHA02875          2 DQVALCDA--ILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP--------------   61 (413)
T ss_pred             CchHHHHH--HHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--------------
Confidence            56788889  99999999999988    68888888889999999999999999999999998874              


Q ss_pred             HHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHH
Q 015738          114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLAL  193 (401)
Q Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~L  193 (401)
                          +..+..+.||||+|+..|+.+++++|++.|+......+..|.||||+|+.                .++.+++++|
T Consensus        62 ----~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~----------------~~~~~iv~~L  121 (413)
T PHA02875         62 ----DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI----------------LKKLDIMKLL  121 (413)
T ss_pred             ----cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH----------------hCCHHHHHHH
Confidence                34456788999999999999999999999887666667789999999998                3488999999


Q ss_pred             HhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccc
Q 015738          194 LENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIA  273 (401)
Q Consensus       194 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  273 (401)
                      ++.|++++..+..|.||||+|+..  ++.+.++.|+..+.. ++..+..|.||||+|+..|+.+++++|++.|+++.. .
T Consensus       122 l~~gad~~~~~~~g~tpLh~A~~~--~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~-~  197 (413)
T PHA02875        122 IARGADPDIPNTDKFSPLHLAVMM--GDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY-F  197 (413)
T ss_pred             HhCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc-C
Confidence            999999999999999999999988  888888888877654 778888999999999999999999999999998843 3


Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccc---cCCCCCcHHHHHHHh---CChhHHHHHHh
Q 015738          274 DKDRKMTALHLAAGKGDARTVERIISGNPKCYEL---VDNRGCNFLHYAMVS---FHVGQLRNLLE  333 (401)
Q Consensus       274 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~---~~~~g~t~l~~A~~~---~~~~~~~~Ll~  333 (401)
                      +...+.||+|+|+..++.+++++|+++|++ ++.   .+..+.||++.++..   ...+.++.++.
T Consensus       198 ~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad-~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li~  262 (413)
T PHA02875        198 GKNGCVAALCYAIENNKIDIVRLFIKRGAD-CNIMFMIEGEECTILDMICNMCTNLESEAIDALIA  262 (413)
T ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHCCcC-cchHhhcCCCchHHHHHHHhhcCCcccHHHHHHHH
Confidence            443556899999999999999999999988 343   366788999887643   33455555553

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.6e-37  Score=276.32  Aligned_cols=288  Identities=18%  Similarity=0.186  Sum_probs=227.2

Q ss_pred             hhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHc--CCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCC
Q 015738           46 ERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF--GHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNE  123 (401)
Q Consensus        46 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (401)
                      .-..+.|+.|+.    .+. ++.. ..|.|+++.+...  ++.++|++|+++|+++                  +..+..
T Consensus        15 ~~~~~~v~~ll~----~~~-~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv------------------n~~d~~   70 (489)
T PHA02798         15 NVKLSTVKLLIK----SCN-PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANV------------------NGLDNE   70 (489)
T ss_pred             cccHHHHHHHHh----cCC-hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCC------------------CCCCCC
Confidence            345567777776    332 3332 4567777755443  4789999999999984                  677788


Q ss_pred             CChHHHHHHHc-----CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCC
Q 015738          124 KNTALHEAVSQ-----GNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENST  198 (401)
Q Consensus       124 g~t~L~~A~~~-----~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~  198 (401)
                      |.||||.|+.+     +..+++++|+++|+++ +..+..|.||||+|+..+.             .++.+++++|++.|+
T Consensus        71 g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~-------------~~~~~iv~~Ll~~Ga  136 (489)
T PHA02798         71 YSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGY-------------INNLEILLFMIENGA  136 (489)
T ss_pred             CCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCC-------------cChHHHHHHHHHcCC
Confidence            99999998764     6689999999999984 4778889999999987321             237899999999999


Q ss_pred             CCccCCCCCCcHHhHHHhhcccc---cchHHHHHHhhccccccc-ccCCCcHHHHHHHc----CCHHHHHHHHhcCcccc
Q 015738          199 SVSHEGPNGKTALHAAAMRSFAV---DTALPKLLEKKKNLIKET-DQYGWTPIHYAAYY----GNYRTVNLLLETDQSAS  270 (401)
Q Consensus       199 ~~~~~~~~~~t~l~~a~~~~~~~---~~~~~~ll~~~~~~~~~~-~~~~~t~L~~a~~~----~~~~~~~~Ll~~~~~~~  270 (401)
                      +++..+..|.||||+|+..  +.   .+.++.|++.+.. ++.. +..+.||||.++..    ++.+++++|+++|+++.
T Consensus       137 dvn~~d~~g~tpL~~a~~~--~~~~~~~vv~~Ll~~gad-in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~  213 (489)
T PHA02798        137 DTTLLDKDGFTMLQVYLQS--NHHIDIEIIKLLLEKGVD-INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN  213 (489)
T ss_pred             CccccCCCCCcHHHHHHHc--CCcchHHHHHHHHHhCCC-cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc
Confidence            9999999999999999987  44   6778777776544 5555 45788999988764    47999999999998873


Q ss_pred             ccccCCCCchHHH-------HHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccc
Q 015738          271 NIADKDRKMTALH-------LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLID  343 (401)
Q Consensus       271 ~~~~~~~g~t~L~-------~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  343 (401)
                       ..+. .+.++++       .+...+..+++.+|+. +.+ ++.+|..|+||||+|+..++.+++++|++    .|++++
T Consensus       214 -~~~~-~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~----~GAdin  285 (489)
T PHA02798        214 -KENK-SHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQ----LGGDIN  285 (489)
T ss_pred             -cCCc-cccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHH----cCCccc
Confidence             3333 4556655       2445567888888766 454 78999999999999999999999999999    899999


Q ss_pred             cCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccC
Q 015738          344 EGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQN  383 (401)
Q Consensus       344 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  383 (401)
                      .+|..|+||||+|+..++.++++.|++. +++++.....+
T Consensus       286 ~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~i~~~~  324 (489)
T PHA02798        286 IITELGNTCLFTAFENESKFIFNSILNK-KPNKNTISYTY  324 (489)
T ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHHHHHHH
Confidence            9999999999999999999999999966 99888655433

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=274.15  Aligned_cols=346  Identities=14%  Similarity=0.087  Sum_probs=262.6

Q ss_pred             chhhhhhhhcCCCCch--hhhhhHHHHHHHHhhcCCCeeEEeecchhhh-hchHHHHHHHHhhCChhhhcccCCCCcHHH
Q 015738            2 DLNFFKAASAGNSEPF--KDMERDVIERLLTAKAKNTILHINIISSERE-NVSTKFVEEILEKCPALLLQVNAKGDTPLH   78 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~--~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~   78 (401)
                      |..|+..|+.=+++.+  +.|++.|+++... ..|.||||.-  ....+ ..-++.++.+    +...+..+.+|.+|+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~n~~~~~~~~   76 (631)
T PHA02792          4 DKILYDSCKTFNIDACSAQSLIESGANPLYE-YDGETPLKAY--VTKKNNNIKNDVVILL----LSSVDYKNINDFDIFE   76 (631)
T ss_pred             hhHHHhHhhccchhHHHHHHHHHcCCCcccc-cCCCccHHHH--HhhhhhhHHHHHHHHH----HhCCCcCccCCccHHH
Confidence            4556777777765554  6788899998875 4588999987  55443 2334455554    3335678889999998


Q ss_pred             HHH-HcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHH-cCCHHHHHHHHhcCCCCC-----
Q 015738           79 LAA-KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVS-QGNVDVVKILTREDPGYP-----  151 (401)
Q Consensus        79 ~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~~~~~~-----  151 (401)
                      +-| .+|+.|+|++|+++||+.                  +.++..+.+|+|+|+. .++.|++++|+++|++..     
T Consensus        77 ~~~s~n~~lElvk~LI~~GAdv------------------N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~  138 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLEI------------------NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQY  138 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCCc------------------ccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccccc
Confidence            765 678999999999999994                  6677789999999966 699999999999997621     


Q ss_pred             ------------------------------CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCc
Q 015738          152 ------------------------------YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVS  201 (401)
Q Consensus       152 ------------------------------~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~  201 (401)
                                                    ...|..|.||||+++......         +..-+.++++.|+++|++++
T Consensus       139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~---------~~~~~~~v~k~Li~~g~~~~  209 (631)
T PHA02792        139 GYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQD---------GYATSLDVINYLISHEKEMR  209 (631)
T ss_pred             CcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcc---------cccCCHHHHHHHHhCCCCcC
Confidence                                          134556889999998743110         11116899999999999999


Q ss_pred             cCCCCCCcHHhHHHhhcccccchHHHHHHhhccccc------------c------ccc-------CCC------------
Q 015738          202 HEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIK------------E------TDQ-------YGW------------  244 (401)
Q Consensus       202 ~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~------------~------~~~-------~~~------------  244 (401)
                      ..+..|.||||+|+.++.-..+.++.|+........            .      .|.       .|.            
T Consensus       210 ~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~  289 (631)
T PHA02792        210 YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSL  289 (631)
T ss_pred             ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhh
Confidence            999999999999999842266667766653210000            0      000       011            


Q ss_pred             ------------------cHHHHHHHcC--CHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCC
Q 015738          245 ------------------TPIHYAAYYG--NYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKC  304 (401)
Q Consensus       245 ------------------t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~  304 (401)
                                        ..||.-...+  +.+++++|++.|++...    .....+++.|+..++.+++++|+++|++ 
T Consensus       290 ~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r----~~~~n~~~~Aa~~gn~eIVelLIs~GAD-  364 (631)
T PHA02792        290 RNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR----FKHINKYFQKFDNRDPKVVEYILKNGNV-  364 (631)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc----CCcchHHHHHHHcCCHHHHHHHHHcCCc-
Confidence                              1233334444  57999999999988631    1345679999999999999999999998 


Q ss_pred             ccccCCCC--CcHHHHHHHhCChh---HHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhh
Q 015738          305 YELVDNRG--CNFLHYAMVSFHVG---QLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAV  379 (401)
Q Consensus       305 ~~~~~~~g--~t~l~~A~~~~~~~---~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  379 (401)
                      ++.+|..|  .||||+|+.....+   ++++|++    .|+++|.+|..|.||||+|+..++.+++++|+.+ |++++.+
T Consensus       365 IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs----~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~k  439 (631)
T PHA02792        365 VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP----YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINIT  439 (631)
T ss_pred             hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh----cCCccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCc
Confidence            67788775  69999988766654   5788888    8999999999999999999999999999999976 9999999


Q ss_pred             hccCcceeeeee
Q 015738          380 NKQNVSVRHVFN  391 (401)
Q Consensus       380 ~~~g~t~l~~a~  391 (401)
                      |..|.||+++|.
T Consensus       440 D~~G~TpL~~A~  451 (631)
T PHA02792        440 TKYGSTCIGICV  451 (631)
T ss_pred             CCCCCCHHHHHH
Confidence            999999999984

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-37  Score=223.06  Aligned_cols=198  Identities=25%  Similarity=0.296  Sum_probs=174.2

Q ss_pred             HHHHHHHHhcCC-CCccCCC-CCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHh
Q 015738          187 FDMVLALLENST-SVSHEGP-NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE  264 (401)
Q Consensus       187 ~~~~~~Ll~~~~-~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~  264 (401)
                      ..-++-+++... +++.++. +|+||||+|+..  +..+++.+|+......++..|..|+||||+|+..|+.++|+.|+.
T Consensus        16 ~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~--g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~   93 (226)
T KOG4412|consen   16 EFKVEELIQSDPKSLNARDDQDGRTPLHWACSF--GHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLN   93 (226)
T ss_pred             HHHHHHHHhcChhhhhccccccCCceeeeeeec--CchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhc
Confidence            334444555444 5566554 999999999987  999999999988888889999999999999999999999999999


Q ss_pred             c-CccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccc
Q 015738          265 T-DQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLID  343 (401)
Q Consensus       265 ~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  343 (401)
                      + ++++ +.... .|.|+||+|+..|..+++++|++.|+. ++++|..|.||||-|+..|+.+++++|+.    .|+.+|
T Consensus        94 r~~adv-na~tn-~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~----~~a~~n  166 (226)
T KOG4412|consen   94 RSGADV-NATTN-GGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLIS----QGAPLN  166 (226)
T ss_pred             CCCCCc-ceecC-CCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHh----cCCCCC
Confidence            8 7776 44444 799999999999999999999999977 79999999999999999999999999999    889999


Q ss_pred             cCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeeccce
Q 015738          344 EGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYT  395 (401)
Q Consensus       344 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  395 (401)
                      .+|+.|.||||.|...++.++..+|.+. |++++..|+.| ||+..++.++.
T Consensus       167 ~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~-t~~~~a~~~l~  216 (226)
T KOG4412|consen  167 TQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG-TALRIACNELL  216 (226)
T ss_pred             cccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC-chHHHHHHHHH
Confidence            9999999999999888899999888866 89999999999 99988865543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-36  Score=274.12  Aligned_cols=285  Identities=13%  Similarity=0.129  Sum_probs=231.4

Q ss_pred             CCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHc-----CCHH
Q 015738           13 NSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF-----GHFE   87 (401)
Q Consensus        13 ~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~   87 (401)
                      +.+.|+.|++.+. +.... .|.|+++.++....++.+++++|++    .|++++..+..|.||||.|+.+     ++.+
T Consensus        17 ~~~~v~~ll~~~~-~~~~~-~~~~~~~~yl~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEIV-NEYSIFQKYLQRDSPSTDIVKLFIN----LGANVNGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcCC-hhhhc-ccchHHHHHHhCCCCCHHHHHHHHH----CCCCCCCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            4568999997632 32333 3778776553355668999999999    7999999999999999999864     6789


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcC---CHHHHHHHHhcCCCCCCCCCCCCCCHHHH
Q 015738           88 IVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQG---NVDVVKILTREDPGYPYSANNYGKTPLYM  164 (401)
Q Consensus        88 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~  164 (401)
                      ++++|+++|++                  ++.+|..|.||||+|+..+   +.+++++|+++|+++ ...+..|.||||+
T Consensus        91 iv~~Ll~~Gad------------------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~  151 (489)
T PHA02798         91 IVKILIENGAD------------------INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQV  151 (489)
T ss_pred             HHHHHHHCCCC------------------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHH
Confidence            99999999998                  4678889999999999875   789999999999995 5788999999999


Q ss_pred             HHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCC-CCCCcHHhHHHhhc--ccccchHHHHHHhhccccccccc
Q 015738          165 AAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEG-PNGKTALHAAAMRS--FAVDTALPKLLEKKKNLIKETDQ  241 (401)
Q Consensus       165 a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~--~~~~~~~~~ll~~~~~~~~~~~~  241 (401)
                      |+..++             ....+++++|++.|++++..+ ..+.||+|.++...  ..+.+.++.|+..+.. ++..+.
T Consensus       152 a~~~~~-------------~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~  217 (489)
T PHA02798        152 YLQSNH-------------HIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENK  217 (489)
T ss_pred             HHHcCC-------------cchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCc
Confidence            998321             124899999999999998874 57899999988642  2356778888877654 777777


Q ss_pred             CCCcHHH-------HHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCc
Q 015738          242 YGWTPIH-------YAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCN  314 (401)
Q Consensus       242 ~~~t~L~-------~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  314 (401)
                      .+.++++       ++...++.+++++|+. ++++ +..+. .|.||||+|+..++.+++++|++.|++ ++.+|..|+|
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dv-N~~d~-~G~TPL~~A~~~~~~~~v~~LL~~GAd-in~~d~~G~T  293 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDI-NQVDE-LGFNPLYYSVSHNNRKIFEYLLQLGGD-INIITELGNT  293 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHh-cCCC-CCcCc-CCccHHHHHHHcCcHHHHHHHHHcCCc-ccccCCCCCc
Confidence            7888876       2345567888888776 4555 44444 899999999999999999999999998 7999999999


Q ss_pred             HHHHHHHhCChhHHHHHHhcCCcccccccc
Q 015738          315 FLHYAMVSFHVGQLRNLLENNPLARSLIDE  344 (401)
Q Consensus       315 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  344 (401)
                      |||+|+..++.++++.|++    .+++++.
T Consensus       294 pL~~A~~~~~~~iv~~lL~----~~~~~~~  319 (489)
T PHA02798        294 CLFTAFENESKFIFNSILN----KKPNKNT  319 (489)
T ss_pred             HHHHHHHcCcHHHHHHHHc----cCCCHHH
Confidence            9999999999999999999    5555553

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-36  Score=217.34  Aligned_cols=210  Identities=28%  Similarity=0.322  Sum_probs=187.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHH-hcCCCCc
Q 015738          124 KNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALL-ENSTSVS  201 (401)
Q Consensus       124 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll-~~~~~~~  201 (401)
                      +.++.+.+++..-..-++.+++..+..... .|.+|+||||||+..                +..+++.+|+ ..+..++
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~----------------g~~eiv~fLlsq~nv~~d   66 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSF----------------GHVEIVYFLLSQPNVKPD   66 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeec----------------CchhHHHHHHhcCCCCCC
Confidence            457788888888888888888887744444 455999999999983                3889999999 6678888


Q ss_pred             cCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchH
Q 015738          202 HEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA  281 (401)
Q Consensus       202 ~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~  281 (401)
                      .+|..|+||||.|+..  ++.+.++.|+.+.+.+++..+..|.|+||+|+..|+.+++++|++.|+.+ ++.+. .|.||
T Consensus        67 dkDdaGWtPlhia~s~--g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~-~~qtp  142 (226)
T KOG4412|consen   67 DKDDAGWTPLHIAASN--GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDK-QGQTP  142 (226)
T ss_pred             CccccCCchhhhhhhc--CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC-ccccc-ccCch
Confidence            8999999999999998  89999999999988889999999999999999999999999999999877 66676 89999


Q ss_pred             HHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHh
Q 015738          282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV  359 (401)
Q Consensus       282 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~  359 (401)
                      ||-|+.-|..+++++|+..++. ++.+|..|+||||.|...++.++...|++    .|++++..|+.| ||+..|+-.
T Consensus       143 lHRAAavGklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~----~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  143 LHRAAAVGKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVR----AGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             hHHHHhccchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHH----hccceeeccccC-chHHHHHHH
Confidence            9999999999999999999977 79999999999999988899999999999    899999999999 998887643

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=261.37  Aligned_cols=322  Identities=11%  Similarity=0.036  Sum_probs=214.3

Q ss_pred             hhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecch-hhhhchHHHHHHHHhhCChhhh-----------------
Q 015738            6 FKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISS-ERENVSTKFVEEILEKCPALLL-----------------   67 (401)
Q Consensus         6 ~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~-----------------   67 (401)
                      .+|...|++|+|++|+++|++.+..++.|.+|+|+|  +. .++.+++++|++    .|++..                 
T Consensus        77 ~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya--~~~~~~~eivk~Ll~----~Gad~~~~~~~g~~~~~~~~~~~  150 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYA--TTSNPNVDVFKLLLD----KGIPTCSNIQYGYKIIIEQITRA  150 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEe--ecCCCChHHHHHHHH----CCCCcccccccCcchhhhhcccc
Confidence            457778888888888888888888877778888888  65 588888888888    455433                 


Q ss_pred             -------------------cccCCCCcHHHHHHHcC-------CHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhcc
Q 015738           68 -------------------QVNAKGDTPLHLAAKFG-------HFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVN  121 (401)
Q Consensus        68 -------------------~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (401)
                                         ..+..|.||||+|+.++       +.++++.|+++|+++                  +..|
T Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~------------------~~~d  212 (631)
T PHA02792        151 EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM------------------RYYT  212 (631)
T ss_pred             cccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc------------------CccC
Confidence                               33444666666666666       566666666666653                  3445


Q ss_pred             CCCChHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhc----cCCCHHHHHHHHh
Q 015738          122 NEKNTALHEAVSQG--NVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR----TSASFDMVLALLE  195 (401)
Q Consensus       122 ~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~----~~~~~~~~~~Ll~  195 (401)
                      ..|.||||+|+.+.  +.|++++|++..-..   .+  -...|.--..            .+.    ..-+..++..|++
T Consensus       213 ~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~---~~--~~~~l~~y~~------------~~~~~~~~~id~~iv~~ll~  275 (631)
T PHA02792        213 YREHTTLYYYVDKCDIKREIFDALFDSNYSG---NE--LMNILSNYLR------------KQYRNKNHKIDNYIVDKLLS  275 (631)
T ss_pred             CCCChHHHHHHHcccchHHHHHHHHhccccc---cc--hHhHHHHHHH------------HHhccCccCccHHHHHHHHh
Confidence            55666666666666  566666665421100   00  0001110000            001    0113346666666


Q ss_pred             cCCCCcc------CCCC-------------CCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCH
Q 015738          196 NSTSVSH------EGPN-------------GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNY  256 (401)
Q Consensus       196 ~~~~~~~------~~~~-------------~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~  256 (401)
                      .+-..+.      .+..             -+-.||.-...+..+.+.++.++..+....   ......+++.|+..|+.
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~  352 (631)
T PHA02792        276 GHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDP  352 (631)
T ss_pred             CCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCH
Confidence            5532111      0000             112344444443346677788887776532   22255678999999999


Q ss_pred             HHHHHHHhcCccccccccCCCCchHHHHHHhcCCHH---HHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          257 RTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR---TVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       257 ~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~---~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  333 (401)
                      +++++|+++|++++.......+.||||.|+.....+   ++++++++|++ ++.+|..|+||||+|+..++.+++++|++
T Consensus       353 eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs  431 (631)
T PHA02792        353 KVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLID  431 (631)
T ss_pred             HHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHH
Confidence            999999999999843332223679999988776654   58888999988 78999999999999999999999999999


Q ss_pred             cCCccccccccCCCCCCcHHHHHHH--hC--------ChhHHHHHHhhcCCChh
Q 015738          334 NNPLARSLIDEGDAEGNTPLHVLAA--VR--------PKEFHDVMNRSTQANYD  377 (401)
Q Consensus       334 ~~~~~~~~~~~~~~~g~t~L~~A~~--~~--------~~~~~~~Ll~~~~~~~~  377 (401)
                          .|++++.+|..|+||||+|+.  .+        ..++++.|++. |.+++
T Consensus       432 ----~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~-~p~i~  480 (631)
T PHA02792        432 ----NGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSK-LPTIE  480 (631)
T ss_pred             ----CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-CCChh
Confidence                899999999999999999976  22        24567777755 77765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-35  Score=241.52  Aligned_cols=184  Identities=24%  Similarity=0.261  Sum_probs=164.0

Q ss_pred             hhhhhhhhcCCCCchhhhhhH-HHHH--------HHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCC
Q 015738            3 LNFFKAASAGNSEPFKDMERD-VIER--------LLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKG   73 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~-~~~~--------~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   73 (401)
                      |||.+||++|+.++|++|+++ +.++        ......|-+||..|  +..|+.++|+.|++    .|+.+|......
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaA--saAGHl~vVk~L~~----~ga~VN~tT~TN  117 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAA--SAAGHLEVVKLLLR----RGASVNDTTRTN  117 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHH--hccCcHHHHHHHHH----hcCccccccccC
Confidence            789999999999999999995 2211        12223478899999  99999999999999    689999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 015738           74 DTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS  153 (401)
Q Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  153 (401)
                      .|||-.||.-|++++||||+++|+++                  +..|..|.|.||+|+..|+.+|+++|++.|+++ +.
T Consensus       118 StPLraACfDG~leivKyLvE~gad~------------------~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~  178 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADP------------------EIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NA  178 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCC------------------cccccCCCeeEEeeeccCchHHHHHHHHhCCCc-ch
Confidence            99999999999999999999999995                  678899999999999999999999999999995 48


Q ss_pred             CCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHH
Q 015738          154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLE  230 (401)
Q Consensus       154 ~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~  230 (401)
                      ++..|.|+||.++.                +++.++++.|+.+|+.+... ..|.|||..|+..  +..+.++.|+.
T Consensus       179 ks~kGNTALH~caE----------------sG~vdivq~Ll~~ga~i~~d-~~GmtPL~~Aa~t--G~~~iVe~L~~  236 (615)
T KOG0508|consen  179 KSYKGNTALHDCAE----------------SGSVDIVQLLLKHGAKIDVD-GHGMTPLLLAAVT--GHTDIVERLLQ  236 (615)
T ss_pred             hcccCchHHHhhhh----------------cccHHHHHHHHhCCceeeec-CCCCchHHHHhhh--cchHHHHHHhc
Confidence            88999999999998                56999999999999988764 4599999999999  88899999884

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=6.2e-33  Score=237.58  Aligned_cols=198  Identities=27%  Similarity=0.307  Sum_probs=183.7

Q ss_pred             CCCHHHHHHHHhc-CCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccc-cCCCcHHHHHHHcCCHHHHHH
Q 015738          184 SASFDMVLALLEN-STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD-QYGWTPIHYAAYYGNYRTVNL  261 (401)
Q Consensus       184 ~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~  261 (401)
                      .+..+.++.+++. |.+++..|.+|.|+||+|+.+  ++.+.+++++++++. ++... .-+.||||+|+++|+..++.+
T Consensus        54 ~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN--Nrl~v~r~li~~gad-vn~~gG~l~stPLHWAar~G~~~vv~l  130 (600)
T KOG0509|consen   54 YGELETVKELVESEGESVNNPDREGVTLLHWAAIN--NRLDVARYLISHGAD-VNAIGGVLGSTPLHWAARNGHISVVDL  130 (600)
T ss_pred             cchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc--CcHHHHHHHHHcCCC-ccccCCCCCCCcchHHHHcCcHHHHHH
Confidence            4589999999999 999999999999999999999  999999999998877 66666 678899999999999999999


Q ss_pred             HHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccc
Q 015738          262 LLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSL  341 (401)
Q Consensus       262 Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  341 (401)
                      |+++|+++ ...+. .|.+|+|.|+..++.-++.+++.++.+ ++.+|.+|+||||+|+.++.-..++.|+.    .++.
T Consensus       131 LlqhGAdp-t~~D~-~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~----f~a~  203 (600)
T KOG0509|consen  131 LLQHGADP-TLKDK-QGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLK----FGAS  203 (600)
T ss_pred             HHHcCCCC-ceecC-CCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHH----hccc
Confidence            99999998 66665 899999999999999999999999976 79999999999999999999888999999    8899


Q ss_pred             cccCC-CCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          342 IDEGD-AEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       342 ~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      ++.+| ..|+||||+|+..|+..++. |+.+.|++.+..|.+|+||+++|.+
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHH
Confidence            99998 89999999999999999999 7778899999999999999999944

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=7.2e-32  Score=231.08  Aligned_cols=210  Identities=26%  Similarity=0.291  Sum_probs=189.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHh-hhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 015738           74 DTPLHLAAKFGHFEIVRVLIER-AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPY  152 (401)
Q Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  152 (401)
                      ...+..|++.|..+-|+.|++. |.+                  ++..|.+|.|+||+|+.+++.+++++|+++|++++.
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~------------------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~  106 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGES------------------VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNA  106 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcC------------------CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccc
Confidence            4668899999999999999998 766                  456678999999999999999999999999999876


Q ss_pred             CCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhh
Q 015738          153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK  232 (401)
Q Consensus       153 ~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~  232 (401)
                      .-..-+.||||+|++                .++..++..|+++|++++..|..|.+|+|.|++.  ++...+.+++.++
T Consensus       107 ~gG~l~stPLHWAar----------------~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~--~~~~~vayll~~~  168 (600)
T KOG0509|consen  107 IGGVLGSTPLHWAAR----------------NGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF--GHTALVAYLLSKG  168 (600)
T ss_pred             cCCCCCCCcchHHHH----------------cCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh--CchHHHHHHHHhc
Confidence            666889999999999                4499999999999999999999999999999998  9999999999888


Q ss_pred             cccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCC
Q 015738          233 KNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRG  312 (401)
Q Consensus       233 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  312 (401)
                       .+++.+|..|+||||+|+.+|....++.|+..++.. ...++..|+||||.|+..|+..++. |+..++.....+|.+|
T Consensus       169 -~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~-~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g  245 (600)
T KOG0509|consen  169 -ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL-LLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNG  245 (600)
T ss_pred             -ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc-cccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCC
Confidence             669999999999999999999988899999999988 5666569999999999999999999 5555555578899999


Q ss_pred             CcHHHHHHHh
Q 015738          313 CNFLHYAMVS  322 (401)
Q Consensus       313 ~t~l~~A~~~  322 (401)
                      .||+.+|.+.
T Consensus       246 ~tp~~LA~~~  255 (600)
T KOG0509|consen  246 KTPFDLAQER  255 (600)
T ss_pred             CCHHHHHHHh
Confidence            9999999877

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.1e-30  Score=203.10  Aligned_cols=175  Identities=15%  Similarity=0.207  Sum_probs=153.5

Q ss_pred             CCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcC--CHHHHHHHHhcCccccccccCCCCchHHH
Q 015738          206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYG--NYRTVNLLLETDQSASNIADKDRKMTALH  283 (401)
Q Consensus       206 ~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~  283 (401)
                      .+.+||++|+..  ++.+.++.++..    .+..+..|.||||+|+..+  +.+++++|++.|++++ ......|.||||
T Consensus        20 ~~~~pL~~A~~~--~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn-~~~~~~g~TpLh   92 (209)
T PHA02859         20 RYCNPLFYYVEK--DDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN-FKTRDNNLSALH   92 (209)
T ss_pred             ccCcHHHHHHHh--CcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC-ccCCCCCCCHHH
Confidence            468999999999  899999999864    4567888999999999854  8999999999999984 343347899999


Q ss_pred             HHHhc---CCHHHHHHhhhcCCCCccccCCCCCcHHHHHHH--hCChhHHHHHHhcCCccccccccCCCCCCcHHHH-HH
Q 015738          284 LAAGK---GDARTVERIISGNPKCYELVDNRGCNFLHYAMV--SFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV-LA  357 (401)
Q Consensus       284 ~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~  357 (401)
                      .|+..   ++.+++++|+++|++ ++.+|..|.||||+|+.  .++.+++++|++    .|++++.+|..|.||||. |+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~----~gadin~~d~~g~t~Lh~~a~  167 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLID----SGVSFLNKDFDNNNILYSYIL  167 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHH----cCCCcccccCCCCcHHHHHHH
Confidence            98754   479999999999988 68899999999999986  468999999999    899999999999999995 56


Q ss_pred             HhCChhHHHHHHhhcCCChhhhhccCcceeeeeecc
Q 015738          358 AVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYG  393 (401)
Q Consensus       358 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  393 (401)
                      ..++.+++++|++. |++++.+|..|+||+++|.+.
T Consensus       168 ~~~~~~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        168 FHSDKKIFDFLTSL-GIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             hcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhh
Confidence            77899999999865 999999999999999999654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-31  Score=240.01  Aligned_cols=322  Identities=20%  Similarity=0.205  Sum_probs=274.2

Q ss_pred             CchhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhh-hcccCCCCcHHHH
Q 015738            1 MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALL-LQVNAKGDTPLHL   79 (401)
Q Consensus         1 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~g~t~L~~   79 (401)
                      ++|+|..||+.|+.|+|+.|+.+|.+....|..|.+||.+|  +..|+..+|+.|+.    ..+++ ...|..+.|+|.+
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plIma--atagh~tvV~~llk----~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMA--ATAGHITVVQDLLK----AHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhh--cccCchHHHHHHHh----hhhhhhhhcccccCceEEE
Confidence            57899999999999999999999988888888899999999  99999999999977    34444 4578889999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCC
Q 015738           80 AAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSA-NNYG  158 (401)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~  158 (401)
                      ||..|+.++|+.||..|++.                  ..++-...|||-.|...|..++++.|+..|..+.... ...|
T Consensus       831 acsggr~~vvelLl~~gank------------------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklg  892 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGANK------------------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLG  892 (2131)
T ss_pred             ecCCCcchHHHHHHHhhccc------------------cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccC
Confidence            99999999999999999884                  4566678899999999999999999999998765433 4468


Q ss_pred             CCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccC-CCCCCcHHhHHHhhcccccchHHHHHHhhccccc
Q 015738          159 KTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHE-GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIK  237 (401)
Q Consensus       159 ~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~  237 (401)
                      -+||.+|..                .++.+..+.|++.|.++|.. ..+-+|.|-+|+..  +..+.+..||..... +.
T Consensus       893 isPLmlatm----------------ngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq--gr~evv~lLLa~~an-ve  953 (2131)
T KOG4369|consen  893 ISPLMLATM----------------NGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ--GRPEVVFLLLAAQAN-VE  953 (2131)
T ss_pred             cchhhhhhh----------------ccccHHHHHHhcccchhccccccccccceeecccc--CcchHHHHHHHHhhh-hh
Confidence            899999988                33778889999999888864 44567889999887  777777777765544 77


Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHH
Q 015738          238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLH  317 (401)
Q Consensus       238 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  317 (401)
                      .+-..|.|||+-++..|.+++=++|+..|++.+.........|+|.+++..|+.++++.|+...+. +..++.+|+|+|+
T Consensus       954 hRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lw 1032 (2131)
T KOG4369|consen  954 HRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLW 1032 (2131)
T ss_pred             hhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccc
Confidence            788889999999999999999999999999885544444566899999999999999999987776 6889999999999


Q ss_pred             HHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          318 YAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNR  370 (401)
Q Consensus       318 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  370 (401)
                      .|+..|....+..|++    .++|++..|....|+++-|.+.|+++||+++..
T Consensus      1033 la~~Gg~lss~~il~~----~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1033 LASAGGALSSCPILVS----SVADADQQDNRTNSRTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             hhccCCccccchHHhh----cccChhhhhcccccccHHHHHhchhheeccccC
Confidence            9999999999999999    899999999999999999999999999887764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.3e-29  Score=211.39  Aligned_cols=196  Identities=12%  Similarity=-0.000  Sum_probs=119.4

Q ss_pred             HHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC-----CCCCCCCCCHHH
Q 015738           89 VRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP-----YSANNYGKTPLY  163 (401)
Q Consensus        89 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~~~t~l~  163 (401)
                      -++++++|++.                  +.+..+|     +|+..+..|++++|+.+|+++.     ...+..++|+||
T Consensus        65 ~~~~~~~~~~i------------------~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~  121 (437)
T PHA02795         65 YDYFRIHRDNI------------------DQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLL  121 (437)
T ss_pred             HHHHHHcCcch------------------hhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHH
Confidence            48899999884                  4444455     8999999999999999999854     136677999999


Q ss_pred             HHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCC
Q 015738          164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYG  243 (401)
Q Consensus       164 ~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  243 (401)
                      .++.              ...++.+++++|+++|++++..  .+.||+|.|+..  ++.+.++.|+.++....+..+.  
T Consensus       122 ~~~~--------------n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~--~~~eIVk~Lls~Ga~~~n~~~~--  181 (437)
T PHA02795        122 YYLS--------------NAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK--KESSVVEFILNCGIPDENDVKL--  181 (437)
T ss_pred             HHHH--------------hcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc--CcHHHHHHHHhcCCcccccccc--
Confidence            9998              3356899999999999998763  235566666555  5555555555554322111100  


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhC
Q 015738          244 WTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSF  323 (401)
Q Consensus       244 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  323 (401)
                        |++                          ...+.+++|.|...+..+++++|+++|++ ++.+|..|.||||+|+..|
T Consensus       182 --~l~--------------------------~~~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g  232 (437)
T PHA02795        182 --DLY--------------------------KIIQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAG  232 (437)
T ss_pred             --hhh--------------------------hhhccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcC
Confidence              000                          01233455555555555555555555544 3445555555555555555


Q ss_pred             ChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhC
Q 015738          324 HVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVR  360 (401)
Q Consensus       324 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~  360 (401)
                      +.+++++|++    .|++++.+|..|.||||+|+..|
T Consensus       233 ~~eiVelLL~----~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        233 YIDLVSWLLE----NGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             CHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcC
Confidence            5555555555    45555555555555555555544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6e-28  Score=192.06  Aligned_cols=181  Identities=15%  Similarity=0.183  Sum_probs=120.4

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcC--CHHHHHHHHhcC
Q 015738           70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQG--NVDVVKILTRED  147 (401)
Q Consensus        70 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~  147 (401)
                      .+.+.||||+|+..|+.++|+.|++.                     ++..+..|.||||+|+..+  +.+++++|+++|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---------------------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g   76 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---------------------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENG   76 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---------------------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCC
Confidence            44678999999999999999999875                     2345778899999998754  789999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHH
Q 015738          148 PGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPK  227 (401)
Q Consensus       148 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  227 (401)
                      +++....+..|.||||+|+..             ...+..+++++|+++|++++..+..|.||||.|+...         
T Consensus        77 advn~~~~~~g~TpLh~a~~~-------------~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~---------  134 (209)
T PHA02859         77 ADVNFKTRDNNLSALHHYLSF-------------NKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNF---------  134 (209)
T ss_pred             CCCCccCCCCCCCHHHHHHHh-------------CccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhc---------
Confidence            886543345788999987752             1123678888888888888888888888888776431         


Q ss_pred             HHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHH-HHhcCCHHHHHHhhhcCCCCcc
Q 015738          228 LLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHL-AAGKGDARTVERIISGNPKCYE  306 (401)
Q Consensus       228 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~-a~~~~~~~~~~~Ll~~~~~~~~  306 (401)
                                               .++.+++++|++.|+++ +..+. .|.||||. |+..++.+++++|++.|.+ ++
T Consensus       135 -------------------------~~~~~iv~~Li~~gadi-n~~d~-~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad-i~  186 (209)
T PHA02859        135 -------------------------NVRINVIKLLIDSGVSF-LNKDF-DNNNILYSYILFHSDKKIFDFLTSLGID-IN  186 (209)
T ss_pred             -------------------------cCCHHHHHHHHHcCCCc-ccccC-CCCcHHHHHHHhcCCHHHHHHHHHcCCC-CC
Confidence                                     12445555555555444 22222 45555553 3334455555555555554 34


Q ss_pred             ccCCCCCcHHHHHHH
Q 015738          307 LVDNRGCNFLHYAMV  321 (401)
Q Consensus       307 ~~~~~g~t~l~~A~~  321 (401)
                      .+|..|+|||++|..
T Consensus       187 ~~d~~g~tpl~la~~  201 (209)
T PHA02859        187 ETNKSGYNCYDLIKF  201 (209)
T ss_pred             CCCCCCCCHHHHHhh
Confidence            555555555555554

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.4e-28  Score=205.67  Aligned_cols=213  Identities=15%  Similarity=0.056  Sum_probs=144.7

Q ss_pred             chHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHH
Q 015738           50 VSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH  129 (401)
Q Consensus        50 ~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  129 (401)
                      +.+..|.+++-..|++++....+|     +|+..+..+++++|+++|++.+-.+.            +-.++..++|+||
T Consensus        59 ~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~------------~~~~~~~~~~~L~  121 (437)
T PHA02795         59 DPVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSI------------IIKNCNSVQDLLL  121 (437)
T ss_pred             CHHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhh------------hhhccccccHHHH
Confidence            345666777777899999888888     99999999999999999998531111            1146778999999


Q ss_pred             HHHH--cCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCC---
Q 015738          130 EAVS--QGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEG---  204 (401)
Q Consensus       130 ~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~---  204 (401)
                      +++.  .|+.+++++|+++|+++..   ..+.||+|.|+.                .++.+++++|+++|++.....   
T Consensus       122 ~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~----------------~~~~eIVk~Lls~Ga~~~n~~~~~  182 (437)
T PHA02795        122 YYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGIC----------------KKESSVVEFILNCGIPDENDVKLD  182 (437)
T ss_pred             HHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHH----------------cCcHHHHHHHHhcCCcccccccch
Confidence            9999  8999999999999999753   345899999997                338999999999998542211   


Q ss_pred             ---CCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchH
Q 015738          205 ---PNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA  281 (401)
Q Consensus       205 ---~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~  281 (401)
                         ..+.+++|.+...  +..+.++.|+..+. +++.++..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||
T Consensus       183 l~~~~~~t~l~~a~~~--~~~eIve~LIs~GA-DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~d~-~G~Tp  257 (437)
T PHA02795        183 LYKIIQYTRGFLVDEP--TVLEIYKLCIPYIE-DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV-NAVMS-NGYTC  257 (437)
T ss_pred             hhhhhccchhHHHHhc--CHHHHHHHHHhCcC-CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCH
Confidence               2244555555544  44455555554432 35555555666666666666666666666665555 23332 45566


Q ss_pred             HHHHHhcCC--------HHHHHHhhhcCCC
Q 015738          282 LHLAAGKGD--------ARTVERIISGNPK  303 (401)
Q Consensus       282 L~~a~~~~~--------~~~~~~Ll~~~~~  303 (401)
                      ||.|+..|+        .++++.|++++++
T Consensus       258 Lh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        258 LDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             HHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence            666655552        3556655555554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.96  E-value=8.7e-29  Score=183.48  Aligned_cols=239  Identities=22%  Similarity=0.238  Sum_probs=208.7

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC
Q 015738          120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS  199 (401)
Q Consensus       120 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~  199 (401)
                      .+..|.+-+-.+.+.++.+++...+...++.+...+..|.+.++.+.-                +++...+...+.+|..
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap----------------~~s~~k~sttltN~~r  121 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAP----------------CGSVDKVSTTLTNGAR  121 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCC----------------CCCcceeeeeeccccc
Confidence            455677788889999999999999988888777777789999988886                4488889999999999


Q ss_pred             CccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCc
Q 015738          200 VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKM  279 (401)
Q Consensus       200 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~  279 (401)
                      .|..+-.+.+|+.+++.+  .+...+.   ......++..|..|.|||+||+..|++++|++|++.|+++... .+ ...
T Consensus       122 gnevs~~p~s~~slsVhq--l~L~~~~---~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l-gk-~re  194 (296)
T KOG0502|consen  122 GNEVSLMPWSPLSLSVHQ--LHLDVVD---LLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL-GK-YRE  194 (296)
T ss_pred             CCccccccCChhhHHHHH--HHHHHHH---HHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh-hh-hhh
Confidence            999999999999999877  4333333   3334458899999999999999999999999999999998443 33 456


Q ss_pred             hHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHh
Q 015738          280 TALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV  359 (401)
Q Consensus       280 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~  359 (401)
                      ++|..|++.|..++|+.|+.++.+ +|..|-+|-|||-||++.++.++++.|+.    .|++++..+..|.+++..|+..
T Consensus       195 sALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~----sGAd~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  195 SALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLN----SGADVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             hhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHh----cCCCcccccccCCcHHHHHHHh
Confidence            999999999999999999999998 79999999999999999999999999999    9999999999999999999999


Q ss_pred             CChhHHHHHHhhcCCChhhhhccCcceee
Q 015738          360 RPKEFHDVMNRSTQANYDAVNKQNVSVRH  388 (401)
Q Consensus       360 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  388 (401)
                      |+. +++..+++ -+++...|+.-+||+|
T Consensus       270 Gyr-~Vqqvie~-h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  270 GYR-IVQQVIEK-HALKLCQDSEKRTPLH  296 (296)
T ss_pred             hhH-HHHHHHHH-HHHHHhhcccCCCCCC
Confidence            996 88888876 7888888988888875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.96  E-value=4.8e-29  Score=224.52  Aligned_cols=315  Identities=20%  Similarity=0.190  Sum_probs=278.1

Q ss_pred             cCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchh
Q 015738           33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEP  112 (401)
Q Consensus        33 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (401)
                      +-.|+|..|  |+.|+.|.++.|+.    .|+.+..+|..|.+||.+|+-.|+..+|+.|+.+.++.             
T Consensus       756 n~~t~LT~a--caggh~e~vellv~----rganiehrdkkgf~plImaatagh~tvV~~llk~ha~v-------------  816 (2131)
T KOG4369|consen  756 NIKTNLTSA--CAGGHREEVELLVV----RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV-------------  816 (2131)
T ss_pred             ccccccccc--ccCccHHHHHHHHH----hcccccccccccchhhhhhcccCchHHHHHHHhhhhhh-------------
Confidence            367999999  99999999999988    79999999999999999999999999999999998885             


Q ss_pred             hHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHH
Q 015738          113 FRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA  192 (401)
Q Consensus       113 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~  192 (401)
                          -...|..+.|+|-+||-.|+.++|++||..|++.. .++....||+.+|..                .+..++|..
T Consensus       817 ----eaQsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~S----------------ggy~~iI~~  875 (2131)
T KOG4369|consen  817 ----EAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARS----------------GGYTKIIHA  875 (2131)
T ss_pred             ----hhhcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcC----------------cchHHHHHH
Confidence                23567899999999999999999999999999854 788889999999987                349999999


Q ss_pred             HHhcCCCCccC--CCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcccc
Q 015738          193 LLENSTSVSHE--GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS  270 (401)
Q Consensus       193 Ll~~~~~~~~~--~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~  270 (401)
                      |+..|..++.+  .+.|.+||+.|..+  ++......+++.+.........+.+|+|-.|+..|+.+++.+|+...+.. 
T Consensus       876 llS~GseInSrtgSklgisPLmlatmn--gh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv-  952 (2131)
T KOG4369|consen  876 LLSSGSEINSRTGSKLGISPLMLATMN--GHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV-  952 (2131)
T ss_pred             HhhcccccccccccccCcchhhhhhhc--cccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhh-
Confidence            99999888764  45688999999999  99999999998887755555677889999999999999999999988776 


Q ss_pred             ccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccc--cCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCC
Q 015738          271 NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYEL--VDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAE  348 (401)
Q Consensus       271 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  348 (401)
                      ..+- ..|.|||+.++..|..++-+.|+..|++. +.  ....-.|+|.+++..|+.+.++.|+.    ..+-+..++..
T Consensus       953 ehRa-ktgltplme~AsgGyvdvg~~li~~gad~-nasPvp~T~dtalti~a~kGh~kfv~~lln----~~atv~v~Nkk 1026 (2131)
T KOG4369|consen  953 EHRA-KTGLTPLMEMASGGYVDVGNLLIAAGADT-NASPVPNTWDTALTIPANKGHTKFVPKLLN----GDATVRVPNKK 1026 (2131)
T ss_pred             hhhc-ccCCcccchhhcCCccccchhhhhccccc-ccCCCCCcCCccceeecCCCchhhhHHhhC----CccceecccCC
Confidence            3333 48999999999999999999999999883 33  23345689999999999999999999    78889999999


Q ss_pred             CCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee-eccceeE
Q 015738          349 GNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF-NYGYTEL  397 (401)
Q Consensus       349 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~  397 (401)
                      |.|+|-+|+.-|....+..|+.+ ++|++..|+...++++-| .+++.++
T Consensus      1027 G~T~Lwla~~Gg~lss~~il~~~-~ad~d~qdnr~~S~~maafRKgh~~i 1075 (2131)
T KOG4369|consen 1027 GCTVLWLASAGGALSSCPILVSS-VADADQQDNRTNSRTMAAFRKGHFAI 1075 (2131)
T ss_pred             CCcccchhccCCccccchHHhhc-ccChhhhhcccccccHHHHHhchhhe
Confidence            99999999999999999999966 999999999999999988 5555544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.1e-25  Score=213.84  Aligned_cols=244  Identities=20%  Similarity=0.146  Sum_probs=181.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCCHHH-HHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC
Q 015738          123 EKNTALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLY-MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS  199 (401)
Q Consensus       123 ~g~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~t~l~-~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~  199 (401)
                      .+..+++.|+..|+.+.++.+++.  +.+ .+..|..|+|||| .|+.                .++.++++.|++.|. 
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~-in~~d~~G~t~Lh~~A~~----------------~~~~eiv~lLl~~g~-   77 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLN-INCPDRLGRSALFVAAIE----------------NENLELTELLLNLSC-   77 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccC-CCCcCccchhHHHHHHHh----------------cChHHHHHHHHhCCC-
Confidence            567899999999999999999998  555 3467889999999 6665                348899999999987 


Q ss_pred             CccCCCCCCcHHhHHHhhcccccchHHHHHHhhccc----------ccccccCCCcHHHHHHHcCCHHHHHHHHhcCccc
Q 015738          200 VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL----------IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSA  269 (401)
Q Consensus       200 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~----------~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  269 (401)
                         .+..|.||||.|+....+..+.+..++......          .......|.||||.|+.+|+.+++++|++.|+++
T Consensus        78 ---~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv  154 (743)
T TIGR00870        78 ---RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV  154 (743)
T ss_pred             ---CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Confidence               566799999999873223333333333322211          1112356999999999999999999999999988


Q ss_pred             ccccc------------CCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhC---------ChhHH
Q 015738          270 SNIAD------------KDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSF---------HVGQL  328 (401)
Q Consensus       270 ~~~~~------------~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~---------~~~~~  328 (401)
                      .....            ...|.||||.|+..++.+++++|++++++ ++.+|..|+||||+|+..+         ...+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~  233 (743)
T TIGR00870       155 PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMY  233 (743)
T ss_pred             CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            52211            12588999999999999999999999987 7889999999999999986         23345


Q ss_pred             HHHHhcCCcccccc----ccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          329 RNLLENNPLARSLI----DEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       329 ~~Ll~~~~~~~~~~----~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      +.+++... ...+.    +..|..|.||||+|+..|+.++++.|++. +++..........|.+.+
T Consensus       234 ~~l~~ll~-~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       234 NFALSLLD-KLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KYKQKKFVAWPNGQQLLS  297 (743)
T ss_pred             HHHHHHHh-ccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HHhcceeeccCcchHhHh
Confidence            55555211 22223    66799999999999999999999999974 333333333444444443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=2e-25  Score=194.52  Aligned_cols=254  Identities=22%  Similarity=0.218  Sum_probs=129.2

Q ss_pred             CchhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHH
Q 015738            1 MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA   80 (401)
Q Consensus         1 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A   80 (401)
                      +++-|..||+.||.+.+..||+..-        +..++-.+  ..                .....+..|.+|.|.||.|
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~--------~r~~~l~~--~t----------------rsds~n~qd~~gfTalhha   56 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKK--------GRSGLLFF--TT----------------RSDSHNLQDYSGFTLLHHA   56 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCC--------CCCCCCCC--CC----------------CCccccccCccchhHHHHH
Confidence            3677889999999999999998511        12222222  11                1222333444555555555


Q ss_pred             HHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 015738           81 AKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKT  160 (401)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t  160 (401)
                      |.+|+.++++.|+++.+.                  ++..+..|.+|||+|+..|+.++++.++.++.. .+.....|.|
T Consensus        57 ~Lng~~~is~llle~ea~------------------ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~t  117 (854)
T KOG0507|consen   57 VLNGQNQISKLLLDYEAL------------------LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENET  117 (854)
T ss_pred             HhcCchHHHHHHhcchhh------------------hhhhhccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcC
Confidence            555555555555555443                  334445555555555555555555555555522 3344445555


Q ss_pred             HHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccc-----
Q 015738          161 PLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL-----  235 (401)
Q Consensus       161 ~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~-----  235 (401)
                      |||.+++                .+..+.+.+|+.+|+++-..+..+.|++..|++.  +....++.++...-..     
T Consensus       118 plhlaaq----------------hgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf--gr~~Vvq~ll~~~~~~~~~~~  179 (854)
T KOG0507|consen  118 PLHLAAQ----------------HGHLEVVFYLLKKNADPFIRNNSKETVLDLASRF--GRAEVVQMLLQKKFPVQSSLR  179 (854)
T ss_pred             ccchhhh----------------hcchHHHHHHHhcCCCccccCcccccHHHHHHHh--hhhHHHHHHhhhccchhhccc
Confidence            5555555                2245555555555555555555555555555544  5555555544431000     


Q ss_pred             --ccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCC
Q 015738          236 --IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGC  313 (401)
Q Consensus       236 --~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  313 (401)
                        -..++..+.+|||.|+++|+.++++.|++.|.+++ .... .| |+||.|+..|..++|++|++.|.. ...++.+|+
T Consensus       180 ~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din-~~t~-~g-talheaalcgk~evvr~ll~~gin-~h~~n~~~q  255 (854)
T KOG0507|consen  180 VGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN-YTTE-DG-TALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQ  255 (854)
T ss_pred             CCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc-cccc-cc-hhhhhHhhcCcchhhhHHHhhccc-cccccccch
Confidence              11223334455555555555555555555555542 2221 12 555555555555555555555544 344555555


Q ss_pred             cHHHHHHH
Q 015738          314 NFLHYAMV  321 (401)
Q Consensus       314 t~l~~A~~  321 (401)
                      |+|.+...
T Consensus       256 taldil~d  263 (854)
T KOG0507|consen  256 TALDIIID  263 (854)
T ss_pred             HHHHHHHh
Confidence            55544443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=7.1e-26  Score=168.11  Aligned_cols=239  Identities=23%  Similarity=0.212  Sum_probs=201.2

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 015738           69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDP  148 (401)
Q Consensus        69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  148 (401)
                      ++..|.+-+..|.+.|+.+++..++...++-                 +...+.+|.++++.|.-+++...+..++.++.
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-----------------~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~  120 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDA-----------------IDETDPEGWSALLVAAPCGSVDKVSTTLTNGA  120 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCC-----------------CCCCCchhhhhhhhcCCCCCcceeeeeecccc
Confidence            4556778888888999998888877665543                 34566779999999999999999999999988


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHH
Q 015738          149 GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKL  228 (401)
Q Consensus       149 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  228 (401)
                      .. +..+..+.+|+.+++.                ....+.+..+.+  ..+|..|..|.|||.||+.+  ++.+.+++|
T Consensus       121 rg-nevs~~p~s~~slsVh----------------ql~L~~~~~~~~--n~VN~~De~GfTpLiWAaa~--G~i~vV~fL  179 (296)
T KOG0502|consen  121 RG-NEVSLMPWSPLSLSVH----------------QLHLDVVDLLVN--NKVNACDEFGFTPLIWAAAK--GHIPVVQFL  179 (296)
T ss_pred             cC-CccccccCChhhHHHH----------------HHHHHHHHHHhh--ccccCccccCchHhHHHHhc--CchHHHHHH
Confidence            74 3667778999999986                114444444443  45688999999999999998  999999999


Q ss_pred             HHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCcccc
Q 015738          229 LEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELV  308 (401)
Q Consensus       229 l~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  308 (401)
                      ++.+.. ++....+..++|+.|++.|..++|++|+.++.+. +..+- +|-|||.+|++.++.++++.|+..|++ +++.
T Consensus       180 L~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDw-NGgTpLlyAvrgnhvkcve~Ll~sGAd-~t~e  255 (296)
T KOG0502|consen  180 LNSGAD-PDALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDW-NGGTPLLYAVRGNHVKCVESLLNSGAD-VTQE  255 (296)
T ss_pred             HHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceecc-CCCceeeeeecCChHHHHHHHHhcCCC-cccc
Confidence            987765 7778888899999999999999999999999998 55555 678999999999999999999999999 7889


Q ss_pred             CCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHH
Q 015738          309 DNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLH  354 (401)
Q Consensus       309 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~  354 (401)
                      +..|++++..|+..|+- +++..++    ..++.+-+|...+||+|
T Consensus       256 ~dsGy~~mdlAValGyr-~Vqqvie----~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  256 DDSGYWIMDLAVALGYR-IVQQVIE----KHALKLCQDSEKRTPLH  296 (296)
T ss_pred             cccCCcHHHHHHHhhhH-HHHHHHH----HHHHHHhhcccCCCCCC
Confidence            99999999999999988 8999999    67788888888888876

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=1.9e-24  Score=206.37  Aligned_cols=188  Identities=23%  Similarity=0.211  Sum_probs=161.4

Q ss_pred             HHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCc
Q 015738          188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQ  267 (401)
Q Consensus       188 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~  267 (401)
                      ++-..+.+.+..  ..+....++|+.|+..  ++.+.++.++..+. +++..|..|.||||+|+..|+.+++++|+++|+
T Consensus       508 ~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~--g~~~~l~~Ll~~G~-d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        508 NVGDLLGDNGGE--HDDPNMASNLLTVAST--GNAALLEELLKAKL-DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             cHHHHHhhcccc--cCCccchhHHHHHHHc--CCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            344444444432  2344567899999988  88899999887654 488999999999999999999999999999998


Q ss_pred             cccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCC
Q 015738          268 SASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDA  347 (401)
Q Consensus       268 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  347 (401)
                      ++ +..+. .|.||||.|+..|+.+++++|++.+...   ....+.++||.|+..|+.++++.|++    .|+++|.+|.
T Consensus       583 di-n~~d~-~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~----~Gadin~~d~  653 (823)
T PLN03192        583 NV-HIRDA-NGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLK----QGLNVDSEDH  653 (823)
T ss_pred             CC-CCcCC-CCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHH----CCCCCCCCCC
Confidence            87 44444 8999999999999999999999877652   23567799999999999999999999    8999999999


Q ss_pred             CCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccC-cceeeee
Q 015738          348 EGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQN-VSVRHVF  390 (401)
Q Consensus       348 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a  390 (401)
                      .|.||||+|+..|+.+++++|++. |+|++.+|..| .||.+++
T Consensus       654 ~G~TpLh~A~~~g~~~iv~~Ll~~-GAdv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        654 QGATALQVAMAEDHVDMVRLLIMN-GADVDKANTDDDFSPTELR  696 (823)
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999966 99999999998 8998876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1e-23  Score=200.59  Aligned_cols=242  Identities=22%  Similarity=0.147  Sum_probs=180.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHh--hhhhccCCCCCCCCchhhHHHhHhccCCCChHHH-HHHHcCCHHHHHHHHhcC
Q 015738           71 AKGDTPLHLAAKFGHFEIVRVLIER--AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH-EAVSQGNVDVVKILTRED  147 (401)
Q Consensus        71 ~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~~  147 (401)
                      ..+...++.||+.|+.+.|+.+++.  +.+                  ++..|..|+|||| .|+.+++.+++++|++++
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~------------------in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g   76 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLN------------------INCPDRLGRSALFVAAIENENLELTELLLNLS   76 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccC------------------CCCcCccchhHHHHHHHhcChHHHHHHHHhCC
Confidence            3567899999999999999999998  444                  4567889999999 899999999999999988


Q ss_pred             CCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC------C----ccCCCCCCcHHhHHHhh
Q 015738          148 PGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS------V----SHEGPNGKTALHAAAMR  217 (401)
Q Consensus       148 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~------~----~~~~~~~~t~l~~a~~~  217 (401)
                      .     .+..|.||||.|+....             .....++..+...+.+      .    ......|.||||.|+.+
T Consensus        77 ~-----~~~~G~T~Lh~A~~~~~-------------~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~  138 (743)
T TIGR00870        77 C-----RGAVGDTLLHAISLEYV-------------DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHR  138 (743)
T ss_pred             C-----CCCcChHHHHHHHhccH-------------HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHh
Confidence            6     56679999999986210             0012233333333321      0    11234699999999999


Q ss_pred             cccccchHHHHHHhhcccccccc--------------cCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHH
Q 015738          218 SFAVDTALPKLLEKKKNLIKETD--------------QYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH  283 (401)
Q Consensus       218 ~~~~~~~~~~ll~~~~~~~~~~~--------------~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~  283 (401)
                        ++.+.++.|+..+.. ++..+              ..|.||||.|+..|+.+++++|++.|+++ +..+. .|+||||
T Consensus       139 --~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~-~g~T~Lh  213 (743)
T TIGR00870       139 --QNYEIVKLLLERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADS-LGNTLLH  213 (743)
T ss_pred             --CCHHHHHHHHhCCCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhh-hhhHHHH
Confidence              899999999987654 44321              35899999999999999999999999877 44444 7999999


Q ss_pred             HHHhcC---------CHHHHHHhhhcCCCC--c----cccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCC
Q 015738          284 LAAGKG---------DARTVERIISGNPKC--Y----ELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAE  348 (401)
Q Consensus       284 ~a~~~~---------~~~~~~~Ll~~~~~~--~----~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  348 (401)
                      .|+..+         ...+.+++++.+...  .    +..|.+|.||||+|+..|+.++++.|++    .+.........
T Consensus       214 ~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~----~~~~~kk~~a~  289 (743)
T TIGR00870       214 LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA----IKYKQKKFVAW  289 (743)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH----HHHhcceeecc
Confidence            999886         223445555543321  1    5578999999999999999999999999    44444444455


Q ss_pred             CCcHHHHHH
Q 015738          349 GNTPLHVLA  357 (401)
Q Consensus       349 g~t~L~~A~  357 (401)
                      ...|.+.+.
T Consensus       290 ~~~~~~~~~  298 (743)
T TIGR00870       290 PNGQQLLSL  298 (743)
T ss_pred             CcchHhHhh
Confidence            566666554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=187.64  Aligned_cols=238  Identities=23%  Similarity=0.204  Sum_probs=208.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCC------------CCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHH
Q 015738          126 TALHEAVSQGNVDVVKILTREDP------------GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLAL  193 (401)
Q Consensus       126 t~L~~A~~~~~~~~~~~Ll~~~~------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~L  193 (401)
                      +-+--|++.|+++.+..|++...            +-.+..|.+|.|.||.|+.                .++.++++.|
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~L----------------ng~~~is~ll   68 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVL----------------NGQNQISKLL   68 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHh----------------cCchHHHHHH
Confidence            45677999999999999998632            2234567799999999998                4489999999


Q ss_pred             HhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccc
Q 015738          194 LENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIA  273 (401)
Q Consensus       194 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  273 (401)
                      +++.+-++..+..|.+|||+|++.  ++.+.++.++.+. ...+.....|.||||.|++.|+.+++.+|+.++++. .+.
T Consensus        69 le~ea~ldl~d~kg~~plhlaaw~--g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~  144 (854)
T KOG0507|consen   69 LDYEALLDLCDTKGILPLHLAAWN--GNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIR  144 (854)
T ss_pred             hcchhhhhhhhccCcceEEehhhc--CcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCc-ccc
Confidence            999999999999999999999999  9999999999888 558888899999999999999999999999999998 455


Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHhhhcCCCC-------ccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCC
Q 015738          274 DKDRKMTALHLAAGKGDARTVERIISGNPKC-------YELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGD  346 (401)
Q Consensus       274 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~-------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  346 (401)
                      .. .+.|+|..|++-|..++++.|++..-..       -..++..+.+|||.|+.+|+.++++.|++    .|.++|...
T Consensus       145 nn-s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~----ag~din~~t  219 (854)
T KOG0507|consen  145 NN-SKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE----AGFDINYTT  219 (854)
T ss_pred             Cc-ccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh----cCCCccccc
Confidence            54 7789999999999999999998762110       12356678899999999999999999999    999999988


Q ss_pred             CCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          347 AEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       347 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      ..| |+||-|+.-|..+++.+|++. |++..++|.+|+|+|++.
T Consensus       220 ~~g-talheaalcgk~evvr~ll~~-gin~h~~n~~~qtaldil  261 (854)
T KOG0507|consen  220 EDG-TALHEAALCGKAEVVRFLLEI-GINTHIKNQHGQTALDII  261 (854)
T ss_pred             ccc-hhhhhHhhcCcchhhhHHHhh-ccccccccccchHHHHHH
Confidence            777 999999999999999999976 999999999999999886

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=3.8e-23  Score=197.54  Aligned_cols=195  Identities=17%  Similarity=0.222  Sum_probs=166.6

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHH
Q 015738          135 GNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA  214 (401)
Q Consensus       135 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  214 (401)
                      ...++-.++.+.+..   ..+..+.++++.|+.                .++.++++.|++.|++++..|..|.||||+|
T Consensus       505 ~~l~v~~ll~~~~~~---~~~~~~~~~L~~Aa~----------------~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~A  565 (823)
T PLN03192        505 HDLNVGDLLGDNGGE---HDDPNMASNLLTVAS----------------TGNAALLEELLKAKLDPDIGDSKGRTPLHIA  565 (823)
T ss_pred             ccccHHHHHhhcccc---cCCccchhHHHHHHH----------------cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            334455555554433   234456788999998                3489999999999999999999999999999


Q ss_pred             HhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHH
Q 015738          215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTV  294 (401)
Q Consensus       215 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  294 (401)
                      +..  ++.+.++.|+..+ .+++.+|..|.||||+|+..|+.+++++|++.++...    ...+.++||.|+..|+.+++
T Consensus       566 a~~--g~~~~v~~Ll~~g-adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~----~~~~~~~L~~Aa~~g~~~~v  638 (823)
T PLN03192        566 ASK--GYEDCVLVLLKHA-CNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD----PHAAGDLLCTAAKRNDLTAM  638 (823)
T ss_pred             HHc--ChHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC----cccCchHHHHHHHhCCHHHH
Confidence            998  8899999888864 5588999999999999999999999999998775442    23566999999999999999


Q ss_pred             HHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCC-CcHHHHHHHhC
Q 015738          295 ERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEG-NTPLHVLAAVR  360 (401)
Q Consensus       295 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g-~t~L~~A~~~~  360 (401)
                      +.|+++|++ ++.+|..|+||||+|+..|+.+++++|++    .|++++.+|..| .||++++....
T Consensus       639 ~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~----~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        639 KELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIM----NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHH----cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            999999998 68999999999999999999999999999    899999999988 99999886544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=4.8e-25  Score=176.08  Aligned_cols=147  Identities=21%  Similarity=0.257  Sum_probs=69.4

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhc-----CCHHHHHHhhhcCCCCcccc-CC
Q 015738          237 KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGK-----GDARTVERIISGNPKCYELV-DN  310 (401)
Q Consensus       237 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~-----~~~~~~~~Ll~~~~~~~~~~-~~  310 (401)
                      +..|.+|+|+|||++.++|+++|+.|++.|........ .-|+||+++++..     .+.++|..|..-|..  |.+ ..
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qN-rAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV--NaKAsQ  338 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQN-RAGYTPVMLAALAKLKQPADRTVVERLFKMGDV--NAKASQ  338 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccc-cccccHHHHHHHHhhcchhhHHHHHHHHhccCc--chhhhh
Confidence            34444555555555555555555555554444322222 2444555544421     233444444444332  221 22


Q ss_pred             CCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          311 RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       311 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      .|+|+|++|+.+|+.++++.||.    .|+|+|.+|.+|-|+|+.|++.|+.+++++||...++|....|.+|.|+|.+|
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLa----cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLA----CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIA  414 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHH----ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhH
Confidence            34555555555555555555555    45555555555555555555555555555555555555555555555555555

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=5.9e-23  Score=164.23  Aligned_cols=164  Identities=24%  Similarity=0.289  Sum_probs=147.9

Q ss_pred             CccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHc-----CCHHHHHHHHhcCcccccccc
Q 015738          200 VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYY-----GNYRTVNLLLETDQSASNIAD  274 (401)
Q Consensus       200 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~-----~~~~~~~~Ll~~~~~~~~~~~  274 (401)
                      +|..|.+|+|+|||++.+  .+.+.|..||..+.++++..+.-|+||+|.++..     ...++|..|...|..  +..-
T Consensus       261 VNlaDsNGNTALHYsVSH--aNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV--NaKA  336 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSH--ANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV--NAKA  336 (452)
T ss_pred             hhhhcCCCCeeeeeeecc--cchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc--chhh
Confidence            467899999999999998  9999999999999999999999999999998764     357889999988743  3444


Q ss_pred             CCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHH
Q 015738          275 KDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLH  354 (401)
Q Consensus       275 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~  354 (401)
                      ...|+|+|++|+.+|+.++|+.||..|++ +|++|.+|-|+|++|+++|+.+++++||..   .++|+...|.+|-|+|.
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~---p~cd~sLtD~DgSTAl~  412 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAV---PSCDISLTDVDGSTALS  412 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhcc---CcccceeecCCCchhhh
Confidence            45899999999999999999999999999 899999999999999999999999999984   58889999999999999


Q ss_pred             HHHHhCChhHHHHHHhh
Q 015738          355 VLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       355 ~A~~~~~~~~~~~Ll~~  371 (401)
                      +|.+.|+.+|.-+|-.+
T Consensus       413 IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  413 IALEAGHREIAVMLYAH  429 (452)
T ss_pred             hHHhcCchHHHHHHHHH
Confidence            99999999998777654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=155.58  Aligned_cols=143  Identities=14%  Similarity=0.125  Sum_probs=120.0

Q ss_pred             ccccccCCCcHHHHHHHcCCH----HHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHH---HHHhhhcCCCCcccc
Q 015738          236 IKETDQYGWTPIHYAAYYGNY----RTVNLLLETDQSASNIADKDRKMTALHLAAGKGDART---VERIISGNPKCYELV  308 (401)
Q Consensus       236 ~~~~~~~~~t~L~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~---~~~Ll~~~~~~~~~~  308 (401)
                      +...+..+.++||.|++.|+.    +++++|++.+... +..+. .|.||||+|+..|..+.   +++|++.|++ ++.+
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~   89 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDH-HGRQCTHMVAWYDRANAVMKIELLVNMGAD-INAR   89 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCC-CCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCC
Confidence            445667788899999999998    6666777777665 33333 78999999999987654   7899999987 6778


Q ss_pred             C-CCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcc
Q 015738          309 D-NRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVS  385 (401)
Q Consensus       309 ~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  385 (401)
                      + ..|+||||+|+..++.+++++|+..   .|++++.++..|.||||+|+..++.+++++|+.. |++++.++..|.+
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~---~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~  163 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQ---LGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhc---cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcccCCcc
Confidence            7 5899999999999999999999942   5899999999999999999999999999999865 9999999988754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=2.6e-22  Score=169.05  Aligned_cols=227  Identities=25%  Similarity=0.285  Sum_probs=170.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 015738           76 PLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN  155 (401)
Q Consensus        76 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  155 (401)
                      .+.-||..|..+-|..|+..|+.+                  +..+.+|.|+||-+|...+.+||++|+++|++++ ..|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~------------------~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d  103 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP------------------NLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQD  103 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc------------------cccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccc
Confidence            356788999999999999999874                  5778899999999999999999999999999954 888


Q ss_pred             CCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccc
Q 015738          156 NYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL  235 (401)
Q Consensus       156 ~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~  235 (401)
                      ..++||+|.|+.                +++..++.+|+.+|+++...+.+|..|+..+..-  .....+.......   
T Consensus       104 ~e~wtPlhaaas----------------cg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~e--a~~~~l~~~~~r~---  162 (527)
T KOG0505|consen  104 NEGWTPLHAAAS----------------CGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDE--ATLDVLETEMARQ---  162 (527)
T ss_pred             cccCCcchhhcc----------------cccHHHHHHHHHhhhhhhhccCCCCCccccccCc--chhHHHHHHHHHh---
Confidence            999999999998                5599999999999999999999999998776433  1112222211111   


Q ss_pred             ccccccCCCcHHHHHHHcC----CHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCC
Q 015738          236 IKETDQYGWTPIHYAAYYG----NYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNR  311 (401)
Q Consensus       236 ~~~~~~~~~t~L~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  311 (401)
                             |.+ +. +++.-    ..+=++..+..|... .+... .|-|.||.|+..|..++.++|++.+.. ++.+|.+
T Consensus       163 -------gi~-ie-a~R~~~e~~ml~D~~q~l~~G~~~-d~~~~-rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~d  230 (527)
T KOG0505|consen  163 -------GID-IE-AARKAEEQTMLDDARQWLNAGAEL-DARHA-RGATALHVAAANGYTEVAALLLQAGYS-VNIKDYD  230 (527)
T ss_pred             -------ccc-HH-HHhhhhHHHHHHHHHHHHhccccc-ccccc-ccchHHHHHHhhhHHHHHHHHHHhccC-ccccccc
Confidence                   112 11 11111    122233344455554 33333 377888888888888888888888877 6778888


Q ss_pred             CCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHH
Q 015738          312 GCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA  358 (401)
Q Consensus       312 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~  358 (401)
                      |+||||.|+..+..++++.|++    +|++.+.....|.||+.+|..
T Consensus       231 gWtPlHAAA~Wg~~~~~elL~~----~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  231 GWTPLHAAAHWGQEDACELLVE----HGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             CCCcccHHHHhhhHhHHHHHHH----hhcccchhhhcCCCCccchhh
Confidence            8888888888888888888887    788888888888888887765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=4.2e-22  Score=152.54  Aligned_cols=149  Identities=15%  Similarity=0.097  Sum_probs=126.2

Q ss_pred             HHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHH---HHHHHHhhhhh
Q 015738           23 DVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEI---VRVLIERAKLA   99 (401)
Q Consensus        23 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~~~~~   99 (401)
                      ++++....+..+.++||.|  ++.|+.+.+..+++.+...+.+++.+|..|+||||+|+..|+.++   +++|+++|+++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a--~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRI--CRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHH--HHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            4677777777799999999  999998666666555556888999999999999999999998654   89999999984


Q ss_pred             ccCCCCCCCCchhhHHHhHhcc-CCCChHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHhcCCchhHHHh
Q 015738          100 QRGDEEPESGVEPFRQMIRMVN-NEKNTALHEAVSQGNVDVVKILTR-EDPGYPYSANNYGKTPLYMAAEYENRSDMLRG  177 (401)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  177 (401)
                                        +..+ ..|.||||+|+..++.+++++|+. .+.++ ...+..|.||||+|+.          
T Consensus        87 ------------------n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~----------  137 (166)
T PHA02743         87 ------------------NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYK----------  137 (166)
T ss_pred             ------------------CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHH----------
Confidence                              5666 479999999999999999999995 67774 4688899999999998          


Q ss_pred             hhhhccCCCHHHHHHHHhcCCCCccCCCCCC
Q 015738          178 LLENRTSASFDMVLALLENSTSVSHEGPNGK  208 (401)
Q Consensus       178 l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~  208 (401)
                            .+..+++++|+++|++++.++..|.
T Consensus       138 ------~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        138 ------MRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             ------cCCHHHHHHHHHcCCCCCCcccCCc
Confidence                  3388999999999999988877664

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=7.3e-22  Score=166.36  Aligned_cols=232  Identities=22%  Similarity=0.226  Sum_probs=170.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCC
Q 015738          127 ALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPN  206 (401)
Q Consensus       127 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~  206 (401)
                      .+.-|+..+..+=++.|+..|+.+ ...+.+|.|++|-++.                ..+.++|++|+++|++++..+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~i----------------d~~~e~v~~l~e~ga~Vn~~d~e  105 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACI----------------DDNLEMVKFLVENGANVNAQDNE  105 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHh----------------cccHHHHHHHHHhcCCccccccc
Confidence            455677778888888888877664 5677778888888887                33778888888888888888888


Q ss_pred             CCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHH
Q 015738          207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA  286 (401)
Q Consensus       207 ~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~  286 (401)
                      ++||+|.|+..  ++..++.+++..+.. +...+..|..|.-.+...-..+++..-...............-.+-     
T Consensus       106 ~wtPlhaaasc--g~~~i~~~li~~gA~-~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~m-----  177 (527)
T KOG0505|consen  106 GWTPLHAAASC--GYLNIVEYLIQHGAN-LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTM-----  177 (527)
T ss_pred             cCCcchhhccc--ccHHHHHHHHHhhhh-hhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHH-----
Confidence            88888888776  777788877777665 5556666777766655544444444433321111011111011111     


Q ss_pred             hcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHH
Q 015738          287 GKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHD  366 (401)
Q Consensus       287 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  366 (401)
                          .+-+...+..|.. ..+++..|-|+||.|+..|..++.++|++    .|.+++.+|.+|.||||.|+..+..++++
T Consensus       178 ----l~D~~q~l~~G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~----ag~~~~~~D~dgWtPlHAAA~Wg~~~~~e  248 (527)
T KOG0505|consen  178 ----LDDARQWLNAGAE-LDARHARGATALHVAAANGYTEVAALLLQ----AGYSVNIKDYDGWTPLHAAAHWGQEDACE  248 (527)
T ss_pred             ----HHHHHHHHhcccc-ccccccccchHHHHHHhhhHHHHHHHHHH----hccCcccccccCCCcccHHHHhhhHhHHH
Confidence                1122333445655 56777779999999999999999999999    99999999999999999999999999999


Q ss_pred             HHHhhcCCChhhhhccCcceeeeeecc
Q 015738          367 VMNRSTQANYDAVNKQNVSVRHVFNYG  393 (401)
Q Consensus       367 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~  393 (401)
                      +|+.+ |++++.++..|.||++++.+.
T Consensus       249 lL~~~-ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  249 LLVEH-GADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHh-hcccchhhhcCCCCccchhhh
Confidence            77755 999999999999999999653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=7.3e-22  Score=141.21  Aligned_cols=140  Identities=21%  Similarity=0.190  Sum_probs=115.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCCh
Q 015738          246 PIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHV  325 (401)
Q Consensus       246 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  325 (401)
                      .+.+|+..+....|+.|++..++..+.++. .|.||||-|+.+|+.++++.|+..|++ ...+...|+||||.||..++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccch
Confidence            456788888888888888887777565555 788888888888888888888888887 677888888888888888888


Q ss_pred             hHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCC-hhHHHHHHhhcCCChhhhhccCcceeeeee
Q 015738          326 GQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRP-KEFHDVMNRSTQANYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       326 ~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  391 (401)
                      +++..||+    .|+|+|+......||||+|+..++ ...+.+|+...++++..++..+.||+++|.
T Consensus       144 ~va~~LLq----hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  144 EVAGRLLQ----HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             hHHHHHHh----ccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence            88888888    888888888888888888887654 455667777788888888888888888884

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=7.4e-21  Score=146.58  Aligned_cols=130  Identities=18%  Similarity=0.191  Sum_probs=111.3

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHhc------CccccccccCCCCchHHHHHHhcCC----HHHHHHhhhcCCCCc
Q 015738          236 IKETDQYGWTPIHYAAYYGNYRTVNLLLET------DQSASNIADKDRKMTALHLAAGKGD----ARTVERIISGNPKCY  305 (401)
Q Consensus       236 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~------~~~~~~~~~~~~g~t~L~~a~~~~~----~~~~~~Ll~~~~~~~  305 (401)
                      ++..+..|.||||+|++.|+.++++.|+..      +++. +..+ ..|.||||+|+..|+    .+++++|++.+++ +
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d-~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-i   90 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATD-DAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-I   90 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccC-CCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-C
Confidence            445677899999999999999999998643      2333 3333 378999999999998    5899999999988 6


Q ss_pred             cccCC-CCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          306 ELVDN-RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       306 ~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      +.++. .|+||||+|+..++.+++++|+..   .|++++.+|..|.||||+|+..++.+++++|++.
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~---~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQ---PGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            77775 899999999999999999999972   3789999999999999999999999999999865

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=3.8e-21  Score=148.19  Aligned_cols=134  Identities=20%  Similarity=0.160  Sum_probs=114.0

Q ss_pred             HHhhcCCCeeEEeecchhhhhchHHHHHHHH--hhCChhhhcccCCCCcHHHHHHHcCC----HHHHHHHHHhhhhhccC
Q 015738           29 LTAKAKNTILHINIISSERENVSTKFVEEIL--EKCPALLLQVNAKGDTPLHLAAKFGH----FEIVRVLIERAKLAQRG  102 (401)
Q Consensus        29 ~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~  102 (401)
                      ..+..|.|+||+|  ++.|+.+++++|+.+.  ...+.+++.+|..|.||||+|+..|+    .+++++|++.|++.   
T Consensus        16 ~~~~~g~t~Lh~A--a~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi---   90 (169)
T PHA02741         16 EKNSEGENFFHEA--ARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI---   90 (169)
T ss_pred             ccccCCCCHHHHH--HHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC---
Confidence            3456699999999  9999999999997644  13467899999999999999999998    58999999999884   


Q ss_pred             CCCCCCCchhhHHHhHhccC-CCChHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhh
Q 015738          103 DEEPESGVEPFRQMIRMVNN-EKNTALHEAVSQGNVDVVKILTRE-DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE  180 (401)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~  180 (401)
                                     +.++. .|.||||+|+..++.+++++|++. +.+ ....+..|.|||++|+.             
T Consensus        91 ---------------n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~-------------  141 (169)
T PHA02741         91 ---------------NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAID-------------  141 (169)
T ss_pred             ---------------CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHH-------------
Confidence                           55664 899999999999999999999985 766 45788999999999998             


Q ss_pred             hccCCCHHHHHHHHhcCCC
Q 015738          181 NRTSASFDMVLALLENSTS  199 (401)
Q Consensus       181 ~~~~~~~~~~~~Ll~~~~~  199 (401)
                         .++.++++.|++.++.
T Consensus       142 ---~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        142 ---NEDVAMMQILREIVAT  157 (169)
T ss_pred             ---CCCHHHHHHHHHHHHH
Confidence               3378888888887654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=2.3e-20  Score=153.61  Aligned_cols=161  Identities=17%  Similarity=0.163  Sum_probs=127.0

Q ss_pred             hhcccCCCCcH-HHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHH
Q 015738           66 LLQVNAKGDTP-LHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILT  144 (401)
Q Consensus        66 ~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  144 (401)
                      +..+|..|.|+ ||.|+..|+.+++++|+++|++++....              ..+..|.||||+|+..++.+++++|+
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~--------------~sd~~g~TpLh~Aa~~~~~eivklLL   90 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP--------------LSENSKTNPLIYAIDCDNDDAAKLLI   90 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc--------------ccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            45578888765 5667778999999999999998632210              12458999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccch
Q 015738          145 REDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTA  224 (401)
Q Consensus       145 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  224 (401)
                      ++|+++....+..|.||||+|+.                .+..+++++|++.|++++..+..|.||+|+|+..  +....
T Consensus        91 ~~GADVN~~~~~~g~TpLh~Aa~----------------~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~--~~~~~  152 (300)
T PHA02884         91 RYGADVNRYAEEAKITPLYISVL----------------HGCLKCLEILLSYGADINIQTNDMVTPIELALMI--CNNFL  152 (300)
T ss_pred             HcCCCcCcccCCCCCCHHHHHHH----------------cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh--CChhH
Confidence            99999664346679999999998                3489999999999999999999999999999986  44444


Q ss_pred             HHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCc
Q 015738          225 LPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQ  267 (401)
Q Consensus       225 ~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~  267 (401)
                      +. ++. +    ...+..+.+|++++   ++.+++++|++++.
T Consensus       153 ~~-~~~-~----~~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        153 AF-MIC-D----NEISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             HH-Hhc-C----CcccccccChhhhh---ccHHHHHHHHHHHH
Confidence            32 222 1    12456677888875   47899999998875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=4.3e-21  Score=146.04  Aligned_cols=135  Identities=14%  Similarity=0.135  Sum_probs=107.0

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHhcCcccc-----ccccCCCCchHHHHHHhcCCH---HHHHHhhhcCCCCccc
Q 015738          236 IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-----NIADKDRKMTALHLAAGKGDA---RTVERIISGNPKCYEL  307 (401)
Q Consensus       236 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~-----~~~~~~~g~t~L~~a~~~~~~---~~~~~Ll~~~~~~~~~  307 (401)
                      .+..|..|.||||+|++.|+.  +.++...+....     ....+..|.||||+|+..++.   +++++|++.|++ ++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-ING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccc
Confidence            455677899999999999983  333332221110     111234789999999999986   468899999987 677


Q ss_pred             cC-CCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChh
Q 015738          308 VD-NRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYD  377 (401)
Q Consensus       308 ~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  377 (401)
                      ++ ..|+||||+|+..++.+++++|+..   .|++++.+|..|.||||+|+..++.+++++|+.. |++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~---~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~-ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQ---PGVNMEILNYAFKTPYYVACERHDAKMMNILRAK-GAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhC---CCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            87 5899999999999999999999972   3889999999999999999999999999999865 88765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=6.7e-20  Score=150.88  Aligned_cols=114  Identities=11%  Similarity=0.061  Sum_probs=61.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccc--cCCCCchHHHHHHhcCCHHHHHHhhhcCCCCcccc-CCCCCcHHHHHHHhC
Q 015738          247 IHYAAYYGNYRTVNLLLETDQSASNIA--DKDRKMTALHLAAGKGDARTVERIISGNPKCYELV-DNRGCNFLHYAMVSF  323 (401)
Q Consensus       247 L~~a~~~~~~~~~~~Ll~~~~~~~~~~--~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~l~~A~~~~  323 (401)
                      |+.|+..|+.+++++|+++|++++...  ....|.||||+|+..++.+++++|+++|++ ++.+ +..|.||||+|+..+
T Consensus        37 L~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~g~TpLh~Aa~~~  115 (300)
T PHA02884         37 LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEAKITPLYISVLHG  115 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCCCCCHHHHHHHcC
Confidence            344444455566666665555542211  012455566666555555666666555555 3443 334555666655555


Q ss_pred             ChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHH
Q 015738          324 HVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFH  365 (401)
Q Consensus       324 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  365 (401)
                      +.+++++|+.    .|++++.+|..|.||||+|+..++.+++
T Consensus       116 ~~eivklLL~----~GAdin~kd~~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884        116 CLKCLEILLS----YGADINIQTNDMVTPIELALMICNNFLA  153 (300)
T ss_pred             CHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHhCChhHH
Confidence            5556665555    5555555555556666665555554444

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=7.4e-20  Score=139.21  Aligned_cols=123  Identities=17%  Similarity=0.160  Sum_probs=98.6

Q ss_pred             chhhhhhhhcCCCCchhhhhhHH-------HHHHHHhhcCCCeeEEeecchhhhhc---hHHHHHHHHhhCChhhhccc-
Q 015738            2 DLNFFKAASAGNSEPFKDMERDV-------IERLLTAKAKNTILHINIISSERENV---STKFVEEILEKCPALLLQVN-   70 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~-------~~~~~~~~~g~t~L~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~-   70 (401)
                      +||||+||+.|+.  +..+...+       ......+..|.||||+|  +..|+.+   ++++|++    .|++++.++ 
T Consensus        18 ~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a--~~~~~~~~~e~v~~Ll~----~gadin~~~~   89 (154)
T PHA02736         18 ENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIV--SNPDKADPQEKLKLLME----WGADINGKER   89 (154)
T ss_pred             CCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEee--cccCchhHHHHHHHHHH----cCCCccccCC
Confidence            4899999999983  33332221       12234566799999999  8888775   4566666    789999988 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHh-hhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 015738           71 AKGDTPLHLAAKFGHFEIVRVLIER-AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPG  149 (401)
Q Consensus        71 ~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  149 (401)
                      ..|.||||+|+..|+.+++++|+++ |++                  ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d------------------~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVN------------------MEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCC------------------CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4899999999999999999999984 776                  467788999999999999999999999998876


Q ss_pred             C
Q 015738          150 Y  150 (401)
Q Consensus       150 ~  150 (401)
                      .
T Consensus       152 ~  152 (154)
T PHA02736        152 C  152 (154)
T ss_pred             C
Confidence            3

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=7.2e-21  Score=147.81  Aligned_cols=131  Identities=24%  Similarity=0.337  Sum_probs=89.1

Q ss_pred             cccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhh
Q 015738          220 AVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS  299 (401)
Q Consensus       220 ~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  299 (401)
                      ++.-.+..-+.....+.+.-|..|.+|||+|++.|+..+++.|++.|+..+....  ...||||.|+..|+.++|+.|++
T Consensus        11 gna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm--gddtplhlaaahghrdivqkll~   88 (448)
T KOG0195|consen   11 GNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM--GDDTPLHLAAAHGHRDIVQKLLS   88 (448)
T ss_pred             CCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC--CCCcchhhhhhcccHHHHHHHHH
Confidence            3333344444444455666677777777777777777777777777766633222  23477777777777777777777


Q ss_pred             cCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHH
Q 015738          300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLA  357 (401)
Q Consensus       300 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~  357 (401)
                      ..++ ++..+..|+|||||||..|...+++-|+.    .|+.++.-++.|.|||..|-
T Consensus        89 ~kad-vnavnehgntplhyacfwgydqiaedli~----~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   89 RKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLIS----CGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             Hhcc-cchhhccCCCchhhhhhhcHHHHHHHHHh----ccceeeecccCCCCchhhhc
Confidence            7766 57777777777777777777777777777    67777777777777777653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=3.1e-19  Score=127.90  Aligned_cols=146  Identities=23%  Similarity=0.200  Sum_probs=127.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 015738           75 TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSA  154 (401)
Q Consensus        75 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  154 (401)
                      -.+.+|+..+....|+.|++..++.                 ++.+|.+|.||||-|+.+|+.+|++.|+..|++. ..+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~-----------------vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~  126 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANH-----------------VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAK  126 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccc-----------------ccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccc
Confidence            3467899999999999999998887                 8899999999999999999999999999999994 477


Q ss_pred             CCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcc
Q 015738          155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN  234 (401)
Q Consensus       155 ~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~  234 (401)
                      ...|+||||.||.                -.+.+++..|+.+|+|++.......||||.|+..+ +....+..|+.....
T Consensus       127 T~~GWTPLhSAck----------------WnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~r-n~r~t~~~Ll~dryi  189 (228)
T KOG0512|consen  127 TNEGWTPLHSACK----------------WNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNR-NSRDTLELLLHDRYI  189 (228)
T ss_pred             cccCccchhhhhc----------------ccchhHHHHHHhccCcccccccccchhhHHhhccc-chHHHHHHHhhcccc
Confidence            8889999999998                34899999999999999999999999999999874 455667777777776


Q ss_pred             cccccccCCCcHHHHHHHcCC
Q 015738          235 LIKETDQYGWTPIHYAAYYGN  255 (401)
Q Consensus       235 ~~~~~~~~~~t~L~~a~~~~~  255 (401)
                      ........+.||+.+|-+.+-
T Consensus       190 ~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  190 HPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             ChhhhcCccchHHHHHHHhhh
Confidence            677777888899998887653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=3.3e-18  Score=151.81  Aligned_cols=169  Identities=22%  Similarity=0.252  Sum_probs=143.2

Q ss_pred             CCCccCCCCCCcHHhHHHhhcc-cccchHHHHHHhhcccccc----cccCCCcHHHHHHHcCCHHHHHHHHhcCcccccc
Q 015738          198 TSVSHEGPNGKTALHAAAMRSF-AVDTALPKLLEKKKNLIKE----TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNI  272 (401)
Q Consensus       198 ~~~~~~~~~~~t~l~~a~~~~~-~~~~~~~~ll~~~~~~~~~----~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~  272 (401)
                      .+++.+...|.|.||.|..+.. +..+.+..|++.....++.    ....|.||||.|+.+.+.++|++|++.|+++...
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            4566667789999999998532 3447788888776654442    3467999999999999999999999999987311


Q ss_pred             c------------c---------CCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHH
Q 015738          273 A------------D---------KDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNL  331 (401)
Q Consensus       273 ~------------~---------~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  331 (401)
                      .            .         -..|+.||..|+-.++.+++++|++++++ ++.+|++|+|.||..+..-..++..++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~  292 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLA  292 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHH
Confidence            1            0         13578999999999999999999999998 799999999999999999999999999


Q ss_pred             HhcCCccccc--cccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          332 LENNPLARSL--IDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       332 l~~~~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      ++    .|++  ...+|..|.|||.+|++.|+.++.+.+++.
T Consensus       293 L~----~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  293 LE----LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             Hh----cCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99    6666  999999999999999999999999999976

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.4e-18  Score=118.90  Aligned_cols=89  Identities=28%  Similarity=0.370  Sum_probs=70.8

Q ss_pred             HHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCC
Q 015738          282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRP  361 (401)
Q Consensus       282 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  361 (401)
                      ||.|++.|+.+++++|++.+.+ .+.    |+||||+|+..|+.+++++|++    .|++++.+|..|.||||+|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLE----NGADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHH----hcccccccCCCCCCHHHHHHHcCC
Confidence            6788888888888888887655 232    7888888888888888888888    788888888888888888888888


Q ss_pred             hhHHHHHHhhcCCChhhhh
Q 015738          362 KEFHDVMNRSTQANYDAVN  380 (401)
Q Consensus       362 ~~~~~~Ll~~~~~~~~~~~  380 (401)
                      .+++++|++. |++++.+|
T Consensus        72 ~~~~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   72 LEIVKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHHHHHT-TT-TTSS-
T ss_pred             HHHHHHHHHc-CCCCCCcC
Confidence            8888888866 88888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.1e-18  Score=135.72  Aligned_cols=135  Identities=22%  Similarity=0.260  Sum_probs=114.8

Q ss_pred             HHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHH
Q 015738          250 AAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLR  329 (401)
Q Consensus       250 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  329 (401)
                      =|+.|+.-.|++.++......+.-++ .|.+|||.|++.|+..+++.|+.+|+. ++..+....||||+|+.+|+-++++
T Consensus         7 wcregna~qvrlwld~tehdln~gdd-hgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccc-cCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHH
Confidence            35666666666666654444344444 889999999999999999999999988 6888888889999999999999999


Q ss_pred             HHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeee
Q 015738          330 NLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       330 ~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  391 (401)
                      .|++    ..+|+|..+..|+|||||||..|...+.+-|+.. |+-+++.|++|.||++.|+
T Consensus        85 kll~----~kadvnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   85 KLLS----RKADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHH----HhcccchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhhc
Confidence            9999    8899999999999999999999999999999866 9999999999999999884

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=1.7e-17  Score=113.62  Aligned_cols=89  Identities=28%  Similarity=0.371  Sum_probs=79.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChh
Q 015738          247 IHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVG  326 (401)
Q Consensus       247 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  326 (401)
                      ||+|++.|+.+++++|++.+.+...      |.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHH
Confidence            7999999999999999998866632      77999999999999999999999988 6889999999999999999999


Q ss_pred             HHHHHHhcCCccccccccCC
Q 015738          327 QLRNLLENNPLARSLIDEGD  346 (401)
Q Consensus       327 ~~~~Ll~~~~~~~~~~~~~~  346 (401)
                      ++++|++    .|++++.+|
T Consensus        74 ~~~~Ll~----~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLE----HGADVNIRN   89 (89)
T ss_dssp             HHHHHHH----TTT-TTSS-
T ss_pred             HHHHHHH----cCCCCCCcC
Confidence            9999999    888888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=9.5e-17  Score=118.41  Aligned_cols=124  Identities=31%  Similarity=0.411  Sum_probs=110.2

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHH
Q 015738          239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHY  318 (401)
Q Consensus       239 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  318 (401)
                      .+..|.||||+|+..++.+++++|++.+... ...+. .|.+|+|.|+..++.+++++|++.+.. .+..+..|.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDN-DGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHH
Confidence            3567999999999999999999999998775 33333 788999999999999999999999875 57788899999999


Q ss_pred             HHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHH
Q 015738          319 AMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMN  369 (401)
Q Consensus       319 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  369 (401)
                      |+..++.+++++|++    .+.+++..+..|.||+++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLK----HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHH----cCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999    67888889999999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=2.4e-16  Score=140.17  Aligned_cols=197  Identities=26%  Similarity=0.269  Sum_probs=151.2

Q ss_pred             CeeEEeecchhhhhchHHHHHHHHhhC-----ChhhhcccCCCCcHHHHHHHcC---CHHHHHHHHHhhhhhccCCCCCC
Q 015738           36 TILHINIISSERENVSTKFVEEILEKC-----PALLLQVNAKGDTPLHLAAKFG---HFEIVRVLIERAKLAQRGDEEPE  107 (401)
Q Consensus        36 t~L~~a~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~  107 (401)
                      .++..|  ...+..+...-+.....+.     --+++.+...|.|+||.|..+.   +-+++..|++.-+..-..     
T Consensus       103 ~~~~~~--~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind-----  175 (782)
T KOG3676|consen  103 DALFIA--DSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIND-----  175 (782)
T ss_pred             hhhhhc--cccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhh-----
Confidence            344445  5555555555554432111     2356777889999999999843   458999999876543111     


Q ss_pred             CCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCC--------C--------------CCCCCCHHHHH
Q 015738          108 SGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS--------A--------------NNYGKTPLYMA  165 (401)
Q Consensus       108 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~--------~--------------~~~~~t~l~~a  165 (401)
                              .-......|.||||.|+.+.+.++|++|++.|+++...        .              -..|+.||.+|
T Consensus       176 --------~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfA  247 (782)
T KOG3676|consen  176 --------IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFA  247 (782)
T ss_pred             --------hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHH
Confidence                    11234568999999999999999999999999986311        1              22678999999


Q ss_pred             HhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcc-cccccccCCC
Q 015738          166 AEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN-LIKETDQYGW  244 (401)
Q Consensus       166 ~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~  244 (401)
                      +.                .++.+++++|+++|+|++.+|..|+|.||..+..  ...++...+++.++. .....+..|.
T Consensus       248 AC----------------~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~--~~~~My~~~L~~ga~~l~~v~N~qgL  309 (782)
T KOG3676|consen  248 AC----------------TNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIH--FVTEMYDLALELGANALEHVRNNQGL  309 (782)
T ss_pred             HH----------------cCCHHHHHHHHhcCCCCCccccCCChHHHHHHHH--HHHHHHHHHHhcCCCccccccccCCC
Confidence            97                4489999999999999999999999999999988  777888888887765 2456678899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhc
Q 015738          245 TPIHYAAYYGNYRTVNLLLET  265 (401)
Q Consensus       245 t~L~~a~~~~~~~~~~~Ll~~  265 (401)
                      |||..|+..|..++++.+++.
T Consensus       310 TPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  310 TPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             ChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999997

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.68  E-value=4.1e-17  Score=103.86  Aligned_cols=91  Identities=19%  Similarity=0.145  Sum_probs=83.8

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA   81 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~   81 (401)
                      |-.+..++++|.++.|+..+..|.+.+..-. |++|||+|  +.+|+.++++||+.    .|++++.+|+.|-|||..|+
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~g-gR~plhyA--AD~GQl~ilefli~----iGA~i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIYG-GRTPLHYA--ADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAV   75 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHHhC-CcccchHh--hhcchHHHHHHHHH----hccccCCccccCCcHHHHHH
Confidence            3456789999999999999999877776665 99999999  99999999999999    69999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhh
Q 015738           82 KFGHFEIVRVLIERAKLA   99 (401)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~   99 (401)
                      ..|+.++|++|+++|++-
T Consensus        76 wEGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGADR   93 (117)
T ss_pred             HHhhHHHHHHHHHcCccc
Confidence            999999999999999984

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=1.1e-15  Score=112.68  Aligned_cols=123  Identities=33%  Similarity=0.525  Sum_probs=94.1

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 015738           69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDP  148 (401)
Q Consensus        69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  148 (401)
                      .|..|.||||+|+..++.+++++|++.+++.                  ...+..|.||+|+|+..++.+++++|++.++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~------------------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~   64 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV------------------NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA   64 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            4567889999999999889999998888763                  3556788889999988888888888888886


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHH
Q 015738          149 GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKL  228 (401)
Q Consensus       149 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  228 (401)
                      .. ...+..+.||+|+|+.                .++.+++++|+..+.+.+..+..+.||++.|...  +....+++|
T Consensus        65 ~~-~~~~~~~~~~l~~a~~----------------~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~L  125 (126)
T cd00204          65 DV-NARDKDGNTPLHLAAR----------------NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN--GHLEVVKLL  125 (126)
T ss_pred             Cc-cccCCCCCCHHHHHHH----------------cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc--CCHHHHHHh
Confidence            53 3556778888888887                2368888888888877777777777777777766  555555443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=3.4e-15  Score=95.22  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             HHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChh
Q 015738          284 LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKE  363 (401)
Q Consensus       284 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  363 (401)
                      .++++|..+-|+..+..|-+ ++ .-..|++|||+|+.+|+.+++++|+.    .|++++.+|+.|-|||.-|+..|+.+
T Consensus         8 W~vkNG~~DeVk~~v~~g~n-Vn-~~~ggR~plhyAAD~GQl~ilefli~----iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    8 WNVKNGEIDEVKQSVNEGLN-VN-EIYGGRTPLHYAADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhhccCcHHHHHHHHHcccc-HH-HHhCCcccchHhhhcchHHHHHHHHH----hccccCCccccCCcHHHHHHHHhhHH
Confidence            34444444444444444422 22 11244555555555555555555555    45555555555555555555555555


Q ss_pred             HHHHHHhhcCCChhhhhccCcceeeee
Q 015738          364 FHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       364 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      ++++||++ |+|...+-.+|.+.++.+
T Consensus        82 cVklLL~~-GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQN-GADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHc-CcccceeCCCchhHHhhc
Confidence            55555533 555555555554444433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=5.5e-14  Score=115.70  Aligned_cols=130  Identities=27%  Similarity=0.315  Sum_probs=119.2

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCC-----HHHHHHhhhcCC--CCcccc
Q 015738          236 IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD-----ARTVERIISGNP--KCYELV  308 (401)
Q Consensus       236 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~-----~~~~~~Ll~~~~--~~~~~~  308 (401)
                      ....+..+.++++.++..+..+++++++..+.++ ...+. .|.||||.|+..++     .++++.|++.+.  ...+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            3445566889999999999999999999999998 55555 89999999999999     999999999999  667888


Q ss_pred             CCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          309 DNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       309 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      |..|+||||+|+..++.++++.|++    .|++++.++..|.|+++.|+..+..+++..++..
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLE----AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHh----cCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            9999999999999999999999999    8999999999999999999999999999999875

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=1.5e-14  Score=87.86  Aligned_cols=54  Identities=43%  Similarity=0.680  Sum_probs=45.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHH
Q 015738           73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILT  144 (401)
Q Consensus        73 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  144 (401)
                      |.||||+||+.|+.+++++|+++|.++                  +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di------------------n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI------------------NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT------------------T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999884                  677899999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=1.8e-15  Score=92.18  Aligned_cols=50  Identities=26%  Similarity=0.274  Sum_probs=18.9

Q ss_pred             cccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          340 SLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       340 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      .+++.+|..|+||||+|+.+|+.+++++|+ ..|+|++.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            455555555555555555555555555555 33555555555555555544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.54  E-value=6.8e-15  Score=89.62  Aligned_cols=56  Identities=29%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             hhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       297 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      |+++++.+++.+|..|+||||+|+..|+.+++++|++    .|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~----~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ----NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH----CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH----CcCCCCCCcCCCCCHHHhC
Confidence            5677756689999999999999999999999999998    8999999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=2.5e-14  Score=86.85  Aligned_cols=54  Identities=30%  Similarity=0.346  Sum_probs=37.5

Q ss_pred             CCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHH
Q 015738          312 GCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMN  369 (401)
Q Consensus       312 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  369 (401)
                      |+||||+|++.|+.+++++|++    .|.+++.+|..|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~----~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE----HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH----TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5678888888888888888887    67777777777888888888888888877775

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=1.4e-13  Score=128.33  Aligned_cols=106  Identities=25%  Similarity=0.197  Sum_probs=79.4

Q ss_pred             hHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHh
Q 015738          280 TALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV  359 (401)
Q Consensus       280 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~  359 (401)
                      ..|+.|+..|+.+.++.|++.|++ ++.+|..|+||||+|+..|+.+++++|++    .|++++.+|..|.||||+|+..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~----~Gadvn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLE----FGADPTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHC
Confidence            456777777777777777777766 56777778888888888888888888887    6777777777788888888888


Q ss_pred             CChhHHHHHHhh------cCCChhhhhccCcceeeee
Q 015738          360 RPKEFHDVMNRS------TQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       360 ~~~~~~~~Ll~~------~~~~~~~~~~~g~t~l~~a  390 (401)
                      ++.+++++|+..      .|++.+..+..|++|+..+
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            877777777754      4677777777777666544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=1.9e-12  Score=106.48  Aligned_cols=109  Identities=26%  Similarity=0.311  Sum_probs=102.3

Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCC-----hhHHHHHHhcCCcccc---ccccCCCC
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH-----VGQLRNLLENNPLARS---LIDEGDAE  348 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~Ll~~~~~~~~---~~~~~~~~  348 (401)
                      .+.++++.++..+..+++.+++..+.+. +.++..|.||||+|+..++     .++++.|++    .|+   ..+.+|..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~----~g~~~~~~~~~~~~  146 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE----AGADLDVNNLRDED  146 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH----cCCCCCCccccCCC
Confidence            5779999999999999999999999995 9999999999999999999     999999999    777   66777999


Q ss_pred             CCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeee
Q 015738          349 GNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       349 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  391 (401)
                      |.||||+|+..|+.++++.|+.. |++++.++..|.|+++.|.
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~  188 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAA  188 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhc
Confidence            99999999999999999999966 9999999999999999994

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=1.2e-13  Score=116.85  Aligned_cols=116  Identities=26%  Similarity=0.130  Sum_probs=98.7

Q ss_pred             chhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCC
Q 015738           44 SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNE  123 (401)
Q Consensus        44 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (401)
                      +..|..|+|+..+.    .-.|+...|..|.|+||-|+..|+.+||++||+.|++                  ++..|.+
T Consensus       558 aLeGEldlVq~~i~----ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan------------------VNa~DSd  615 (752)
T KOG0515|consen  558 ALEGELDLVQRIIY----EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN------------------VNAADSD  615 (752)
T ss_pred             hhcchHHHHHHHHH----hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc------------------ccCccCC
Confidence            77899999998877    4567888999999999999999999999999999999                  5788999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHh
Q 015738          124 KNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLE  195 (401)
Q Consensus       124 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~  195 (401)
                      |+||||+|+.+++..+++.|++.|+.+....-.++.|+..-+-.              ...+...+.++|-.
T Consensus       616 GWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee--------------~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  616 GWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEE--------------MEEGYDQCSQYLYG  673 (752)
T ss_pred             CCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcch--------------hhhhHHHHHHHHHH
Confidence            99999999999999999999999999877666778888766554              23446666676654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=3.6e-14  Score=119.84  Aligned_cols=119  Identities=20%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             hhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHc
Q 015738            4 NFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF   83 (401)
Q Consensus         4 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~   83 (401)
                      -|..|+..|.+++|+..+..--|+...+..|-|+||-|  +-.||.+||+||++    .|+++|..|.+|+||||.|+.+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNA--iCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNA--ICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhh--hhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhc
Confidence            36789999999999999998666666777799999999  99999999999999    8999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHH--HcCCHHHHHHHHh
Q 015738           84 GHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV--SQGNVDVVKILTR  145 (401)
Q Consensus        84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~  145 (401)
                      ++..+++.|++.|+-+                 +...-.++.|+..-+-  ..|...|.+||..
T Consensus       627 Nnv~~ckqLVe~Gaav-----------------fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAV-----------------FASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CchHHHHHHHhccceE-----------------EeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999876                 3344457778776653  4577889999864

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.41  E-value=2.2e-12  Score=100.94  Aligned_cols=122  Identities=24%  Similarity=0.248  Sum_probs=100.4

Q ss_pred             CCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHH
Q 015738          207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA  286 (401)
Q Consensus       207 ~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~  286 (401)
                      ..+||.-++.+  ++.+....||..... ++..|..|.++|..|+..|+.+++++|++.|+++ +......+.||||+|+
T Consensus        12 ~~~~Lle~i~K--ndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDv-N~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   12 PKSPLLEAIDK--NDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADV-NDKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhhHHHHHHcc--CcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCc-CcccccccccHHHHHH
Confidence            45677777776  777777777776443 7888899999999999999999999999999998 4444458889999999


Q ss_pred             hcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          287 GKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       287 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  333 (401)
                      .+|+.++.+.|++.|+. ....++-|+|+-.+|+--|+.++|..+=.
T Consensus        88 LSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999999888 57788889999999999998888876654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=2.5e-12  Score=100.64  Aligned_cols=120  Identities=23%  Similarity=0.157  Sum_probs=106.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHh
Q 015738          243 GWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVS  322 (401)
Q Consensus       243 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  322 (401)
                      ...||.-++..|..+.+..|++.-... +..+ +.|.++|..|+..|+.++++.|++.|++....++..+.||||+|+.+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D-~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRD-PSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccC-CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            457899999999999999999864333 3344 48999999999999999999999999998777889999999999999


Q ss_pred             CChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHH
Q 015738          323 FHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVM  368 (401)
Q Consensus       323 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  368 (401)
                      |+.++.+.|++    .|+.....|.-|+|+-.+|+..|+.++|..+
T Consensus        90 Gn~dvcrllld----aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   90 GNQDVCRLLLD----AGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             CCchHHHHHHh----ccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            99999999999    8999999999999999999999998888654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.40  E-value=2.8e-12  Score=119.71  Aligned_cols=109  Identities=18%  Similarity=0.139  Sum_probs=95.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCCh
Q 015738          246 PIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHV  325 (401)
Q Consensus       246 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  325 (401)
                      .|+.|+..|+.+.+++|++.|++. +..+. .|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~-~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDY-DGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcH
Confidence            488999999999999999999887 44444 899999999999999999999999988 689999999999999999999


Q ss_pred             hHHHHHHhc---CCccccccccCCCCCCcHHHHHH
Q 015738          326 GQLRNLLEN---NPLARSLIDEGDAEGNTPLHVLA  357 (401)
Q Consensus       326 ~~~~~Ll~~---~~~~~~~~~~~~~~g~t~L~~A~  357 (401)
                      +++++|+++   ....+++++..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999983   11238888888888888876554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.97  E-value=6.5e-10  Score=57.25  Aligned_cols=28  Identities=50%  Similarity=0.763  Sum_probs=26.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhh
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIERAKLA   99 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~   99 (401)
                      +|+||||+||+.|+.++|++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5899999999999999999999999875

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.89  E-value=3.3e-10  Score=101.56  Aligned_cols=91  Identities=18%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             HhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCC-CCCcHHHHHHHhCChhHHHHHHhhcCC
Q 015738          296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDA-EGNTPLHVLAAVRPKEFHDVMNRSTQA  374 (401)
Q Consensus       296 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~  374 (401)
                      ++-+.+....++.|..|+|+||+|+..+...+++||++    +|++++.+|. .|.||||-|..+|+.+++-.||.. |+
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlq----hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~-g~  110 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQ----HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK-GR  110 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHh----cCceeeeccccccchHhhHhhhhchHHHHHHHHhc-CC
Confidence            34444455566677777777777777777777777777    6777777774 477777777777777777666644 77


Q ss_pred             ChhhhhccCcceeeeee
Q 015738          375 NYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       375 ~~~~~~~~g~t~l~~a~  391 (401)
                      .+.++|.+|.+||++..
T Consensus       111 SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen  111 SLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             ceEEecccCCCHHHHHh
Confidence            77777777777777653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.87  E-value=9.2e-09  Score=87.06  Aligned_cols=85  Identities=20%  Similarity=0.164  Sum_probs=46.8

Q ss_pred             HHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhC
Q 015738          281 ALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVR  360 (401)
Q Consensus       281 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~  360 (401)
                      -||..++.|+.++.-.|+..|++..-.-...|.||||.|++.|+..-+++|+-    .|+|++..|.+|+||+.||-..|
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v----YGAD~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV----YGADPGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh----ccCCCCCCCCCCCcHHHHHHhcC
Confidence            35555555555555555555555322233445556666666555555555555    55566666666666666665555


Q ss_pred             ChhHHHHHH
Q 015738          361 PKEFHDVMN  369 (401)
Q Consensus       361 ~~~~~~~Ll  369 (401)
                      +-++.+.|+
T Consensus       212 H~~laeRl~  220 (669)
T KOG0818|consen  212 HHELAERLV  220 (669)
T ss_pred             chHHHHHHH
Confidence            555544443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.87  E-value=3e-09  Score=95.71  Aligned_cols=94  Identities=19%  Similarity=0.292  Sum_probs=81.5

Q ss_pred             chhhhhhH---HHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccC-CCCcHHHHHHHcCCHHHHHH
Q 015738           16 PFKDMERD---VIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNA-KGDTPLHLAAKFGHFEIVRV   91 (401)
Q Consensus        16 ~~~~ll~~---~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~   91 (401)
                      .++-++..   .. .+..|..|+|+||+|  +..+...+++||++    +|.+++.+|. .|+||||-|+.+|+++++-.
T Consensus        32 qlk~F~~k~c~n~-anikD~~GR~alH~~--~S~~k~~~l~wLlq----hGidv~vqD~ESG~taLHRaiyyG~idca~l  104 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNL-ANIKDRYGRTALHIA--VSENKNSFLRWLLQ----HGIDVFVQDEESGYTALHRAIYYGNIDCASL  104 (1267)
T ss_pred             HHHHHHHHhhhhh-hhHHHhhccceeeee--eccchhHHHHHHHh----cCceeeeccccccchHhhHhhhhchHHHHHH
Confidence            45555553   33 567888899999999  99999999999999    6999998885 59999999999999999999


Q ss_pred             HHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHc
Q 015738           92 LIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQ  134 (401)
Q Consensus        92 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  134 (401)
                      |+++|+.                  +..+|.+|.+||..-++-
T Consensus       105 LL~~g~S------------------L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  105 LLSKGRS------------------LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             HHhcCCc------------------eEEecccCCCHHHHHhhc
Confidence            9999987                  578899999999988873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.84  E-value=3.5e-09  Score=56.44  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=22.9

Q ss_pred             CCCcHHHHHHHhCChhHHHHHHhhcCCChhhhh
Q 015738          348 EGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVN  380 (401)
Q Consensus       348 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  380 (401)
                      +|.||||+|+..++.+++++|++. |++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCCC
Confidence            467777777777777777777754 77777665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.84  E-value=4.1e-09  Score=54.25  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=16.7

Q ss_pred             CCcHHHHHHHhCChhHHHHHHhhcCCChh
Q 015738          349 GNTPLHVLAAVRPKEFHDVMNRSTQANYD  377 (401)
Q Consensus       349 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  377 (401)
                      |+||||+|+..|+.+++++|++. |+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEH-GADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHc-CCCCC
Confidence            55666666666666666666644 55554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.77  E-value=5.9e-08  Score=88.25  Aligned_cols=133  Identities=14%  Similarity=0.101  Sum_probs=103.7

Q ss_pred             hhhhhhhcCCCCchhhhhhH----HHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHH
Q 015738            4 NFFKAASAGNSEPFKDMERD----VIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHL   79 (401)
Q Consensus         4 ~l~~A~~~g~~~~~~~ll~~----~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~   79 (401)
                      ....||..||...|+..++.    ..+.+..|.-|+++|+.|  ..+.+.+++++|++    .+.       .-..+|.+
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia--i~nenle~~eLLl~----~~~-------~~gdALL~   94 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA--IDNENLELQELLLD----TSS-------EEGDALLL   94 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc--cccccHHHHHHHhc----Ccc-------ccchHHHH
Confidence            35679999999999999995    367778888899999999  99999999999988    222       12678999


Q ss_pred             HHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 015738           80 AAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNY  157 (401)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  157 (401)
                      |+..|..++|+.++.+.............        -...-..+.|||..|+..+++||++.|+++|..++..-+..
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~--------~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~  164 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDA--------NSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIR  164 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhcccccc--------CcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccc
Confidence            99999999999999986654322221000        01123357899999999999999999999999887555543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.77  E-value=3.7e-09  Score=88.91  Aligned_cols=89  Identities=25%  Similarity=0.298  Sum_probs=82.7

Q ss_pred             hhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHc
Q 015738            4 NFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF   83 (401)
Q Consensus         4 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~   83 (401)
                      .+++|++.||+..++.+.-+|.+....|.+.+|+||.|  +..|+.++++||++.   .+.+++.+|.-|+|||.-|...
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvA--AaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVA--AAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhheee--cccCceeHHHHHHHH---HcCCCChhhccCCCcchHhHhc
Confidence            57899999999999999999998888999999999999  999999999999885   7788899999999999999999


Q ss_pred             CCHHHHHHHHHhhh
Q 015738           84 GHFEIVRVLIERAK   97 (401)
Q Consensus        84 ~~~~~v~~Ll~~~~   97 (401)
                      ++.+++++|-+...
T Consensus       584 ~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQY  597 (622)
T ss_pred             CcHHHHHHHHHHhc
Confidence            99999999988644

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.72  E-value=6.3e-08  Score=82.16  Aligned_cols=86  Identities=24%  Similarity=0.226  Sum_probs=79.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCCh
Q 015738          246 PIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHV  325 (401)
Q Consensus       246 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  325 (401)
                      -||.+++.|+.+..-.|+..|++.+..... .|.||||.|++.|+..-+++|+-+|++ +...|.+|.||+.+|-..|+-
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpe-kg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPE-KGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcc-cCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhcCch
Confidence            489999999999999999999999655554 999999999999999999999999999 789999999999999999999


Q ss_pred             hHHHHHHh
Q 015738          326 GQLRNLLE  333 (401)
Q Consensus       326 ~~~~~Ll~  333 (401)
                      ++.+.|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            99988887

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.69  E-value=3.9e-09  Score=88.78  Aligned_cols=77  Identities=18%  Similarity=0.122  Sum_probs=59.4

Q ss_pred             CCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeee
Q 015738          310 NRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHV  389 (401)
Q Consensus       310 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  389 (401)
                      .++...+.+|+..|+...++.+.-    .|.|++.+|.+.+|+||+|+..|+.+++++|++-.++|++.+|+.|+|||+-
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            344567777888888777777766    6777888888888888888888888888888877788888888888888877


Q ss_pred             e
Q 015738          390 F  390 (401)
Q Consensus       390 a  390 (401)
                      |
T Consensus       580 A  580 (622)
T KOG0506|consen  580 A  580 (622)
T ss_pred             h
Confidence            7

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.68  E-value=6.9e-08  Score=83.38  Aligned_cols=117  Identities=19%  Similarity=0.229  Sum_probs=84.8

Q ss_pred             HHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCC-CccccCCCCCcHHHHHHHhCChh
Q 015738          248 HYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPK-CYELVDNRGCNFLHYAMVSFHVG  326 (401)
Q Consensus       248 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~A~~~~~~~  326 (401)
                      ..|+..+++--++.....|.+. .+.. ....+.||+|+..|+.++|++++++++. ..+..|..|.|+||-|+..++-.
T Consensus       871 l~av~~~D~~klqE~h~~gg~l-l~~~-~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSL-LIQG-PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCce-EeeC-cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            3445555444444444455554 2333 2556888888888888888888888764 34566778888888888888888


Q ss_pred             HHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          327 QLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNR  370 (401)
Q Consensus       327 ~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  370 (401)
                      ++.+|++    .|+.+...|..|.||-.-|.+.++.++..+|-.
T Consensus       949 vc~~lvd----agasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  949 VCQLLVD----AGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHh----cchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            8888888    788888888888888888888888888877753

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.68  E-value=2.4e-08  Score=53.19  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             CCCcHHHHHHHhCChhHHHHHHhcCCccccccccCC
Q 015738          311 RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGD  346 (401)
Q Consensus       311 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  346 (401)
                      +|+||||+|+..++.+++++|++    .|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK----HGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH----TTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH----CcCCCCCCC
Confidence            36777777777777777777777    677776655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.67  E-value=9.8e-08  Score=82.49  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=74.2

Q ss_pred             HHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCC
Q 015738          282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRP  361 (401)
Q Consensus       282 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  361 (401)
                      +..|+..++.--+......|.+ .-.++.+..+.||+|+..|+-++++++|++.+  ...++..|..|.|+||-|+-.++
T Consensus       870 il~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhcc
Confidence            3444444444444444455655 45677788888888888888888888888543  23456667788888888888888


Q ss_pred             hhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          362 KEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       362 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      ..+.++|..- |+.+...|..|+||-+-|
T Consensus       947 r~vc~~lvda-gasl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  947 RAVCQLLVDA-GASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             hHHHHHHHhc-chhheecccCCCChHHHH
Confidence            7888777744 888888888888887766

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.3e-07  Score=81.26  Aligned_cols=91  Identities=30%  Similarity=0.399  Sum_probs=75.0

Q ss_pred             CeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHH
Q 015738           36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQ  115 (401)
Q Consensus        36 t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  115 (401)
                      .|||++  +.....+...-.+.. . ....++.+|..|.||||.|+..|+.+.++.|+..|++                 
T Consensus        22 ~~lh~~--~~~~~~~sl~~el~~-~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-----------------   80 (560)
T KOG0522|consen   22 KPLHWA--VVTTDSDSLEQELLA-K-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-----------------   80 (560)
T ss_pred             cccchh--hhccchhhHHHHHhh-h-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-----------------
Confidence            458998  766666655554441 2 4557888999999999999999999999999999998                 


Q ss_pred             HhHhccCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 015738          116 MIRMVNNEKNTALHEAVSQGNVDVVKILTREDP  148 (401)
Q Consensus       116 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  148 (401)
                       +..+|..|.+|||.|+..|+.+++..++.+..
T Consensus        81 -v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   81 -VSIKNNEGWSPLHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             -ccccccccccHHHHHHHcCCHHHHHHHHHHhH
Confidence             46889999999999999999999988887643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.49  E-value=3.8e-07  Score=79.08  Aligned_cols=90  Identities=20%  Similarity=0.116  Sum_probs=76.8

Q ss_pred             hHHHHHHhcCCHHHHHHhhhcCCC---CccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          280 TALHLAAGKGDARTVERIISGNPK---CYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       280 t~L~~a~~~~~~~~~~~Ll~~~~~---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      .-|.-|+...+...+-.||.+|..   +...-+.+|+|+||+|++.|++.+.++|+=    .|+|+-.+|..|+|+|.||
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW----yg~dv~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW----YGVDVMARDAHGRTALFYA  701 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH----hCccceecccCCchhhhhH
Confidence            346677777888888889988743   233456778999999999999999999997    8999999999999999999


Q ss_pred             HHhCChhHHHHHHhhcCC
Q 015738          357 AAVRPKEFHDVMNRSTQA  374 (401)
Q Consensus       357 ~~~~~~~~~~~Ll~~~~~  374 (401)
                      -+.|..+++..|+.. |.
T Consensus       702 r~a~sqec~d~llq~-gc  718 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQY-GC  718 (749)
T ss_pred             hhcccHHHHHHHHHc-CC
Confidence            999999999999976 54

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.42  E-value=8.8e-08  Score=82.86  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=80.4

Q ss_pred             hhhhhhhhcCCCCchhhhhhHH----HHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHH
Q 015738            3 LNFFKAASAGNSEPFKDMERDV----IERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLH   78 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~~----~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~   78 (401)
                      ..|..|....|+..+-.||.+|    ++....+.+|.|+||+|  |+.|+..+.+.|+.    +|.|+..+|..|+|+|.
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa--~~~gnVvl~QLLiW----yg~dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLA--ARKGNVVLAQLLIW----YGVDVMARDAHGRTALF  699 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhh--hhhcchhHHHHHHH----hCccceecccCCchhhh
Confidence            3578888999999999999874    44445566789999999  99999999999998    79999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhh
Q 015738           79 LAAKFGHFEIVRVLIERAKLA   99 (401)
Q Consensus        79 ~A~~~~~~~~v~~Ll~~~~~~   99 (401)
                      ||-+.|+.+++..|+.+|...
T Consensus       700 yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hHhhcccHHHHHHHHHcCCCc
Confidence            999999999999999999864

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=7.1e-07  Score=76.86  Aligned_cols=88  Identities=20%  Similarity=0.237  Sum_probs=56.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCC
Q 015738          245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH  324 (401)
Q Consensus       245 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  324 (401)
                      -|+|+++.....+-....+........-..+..|.||||+|+..|+.+.++.|+..+++ +..+|..|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCC
Confidence            34777776666555555443322221222223567777777777777777777777776 56677777777777777777


Q ss_pred             hhHHHHHHh
Q 015738          325 VGQLRNLLE  333 (401)
Q Consensus       325 ~~~~~~Ll~  333 (401)
                      .+++..++.
T Consensus       101 ~q~i~~vlr  109 (560)
T KOG0522|consen  101 EQIITEVLR  109 (560)
T ss_pred             HHHHHHHHH
Confidence            777777776

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.33  E-value=2.4e-06  Score=70.41  Aligned_cols=74  Identities=26%  Similarity=0.210  Sum_probs=60.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 015738           74 DTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS  153 (401)
Q Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  153 (401)
                      .--|..||+.|+.+.|++|++.|.+                  ++++|....+||.+|+..||.+++++|+++|+.-. .
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn------------------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-r   97 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN------------------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-R   97 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC------------------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-c
Confidence            3458899999999999999999988                  68899999999999999999999999999998643 2


Q ss_pred             CCCCCCCHHHHHH
Q 015738          154 ANNYGKTPLYMAA  166 (401)
Q Consensus       154 ~~~~~~t~l~~a~  166 (401)
                      ....|..++.-|.
T Consensus        98 dtf~G~RC~YgaL  110 (516)
T KOG0511|consen   98 DTFDGDRCHYGAL  110 (516)
T ss_pred             cccCcchhhhhhh
Confidence            2334555544443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.28  E-value=2.2e-06  Score=63.60  Aligned_cols=70  Identities=24%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             ChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHH
Q 015738           63 PALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKI  142 (401)
Q Consensus        63 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  142 (401)
                      +.++|.+|..|+|+|+.|+..|+.+.+.||+.+|+..                 +...|..|.+++.+|-+.|..++++.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~-----------------vgv~d~ssldaaqlaek~g~~~fvh~   64 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF-----------------VGVTDESSLDAAQLAEKGGAQAFVHS   64 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc-----------------ccccccccchHHHHHHhcChHHHHHH
Confidence            3568899999999999999999999999999999544                 56778899999999999999999999


Q ss_pred             HHhcCCC
Q 015738          143 LTREDPG  149 (401)
Q Consensus       143 Ll~~~~~  149 (401)
                      |.+...+
T Consensus        65 lfe~~~e   71 (223)
T KOG2384|consen   65 LFENDRE   71 (223)
T ss_pred             HHHHhcc
Confidence            9988554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.24  E-value=5.6e-06  Score=75.82  Aligned_cols=79  Identities=28%  Similarity=0.226  Sum_probs=39.5

Q ss_pred             HhHHHhhcccccchHHHHHHhhcc---cccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHh
Q 015738          211 LHAAAMRSFAVDTALPKLLEKKKN---LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAG  287 (401)
Q Consensus       211 l~~a~~~~~~~~~~~~~ll~~~~~---~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~  287 (401)
                      ...|+.+  |+...++..++....   .++..|.-|+++|+.|+.+.+.+++++|++++...         ..+|.+|++
T Consensus        29 fL~a~E~--gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---------gdALL~aI~   97 (822)
T KOG3609|consen   29 FLLAHEN--GDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---------GDALLLAIA   97 (822)
T ss_pred             HHHHHHc--CChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc---------chHHHHHHH
Confidence            3444444  555555555544332   23444555555555555555555555555543221         135555555


Q ss_pred             cCCHHHHHHhhhc
Q 015738          288 KGDARTVERIISG  300 (401)
Q Consensus       288 ~~~~~~~~~Ll~~  300 (401)
                      .+..+.|+.++.+
T Consensus        98 ~~~v~~VE~ll~~  110 (822)
T KOG3609|consen   98 VGSVPLVELLLVH  110 (822)
T ss_pred             HHHHHHHHHHHhc
Confidence            5555555555544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.16  E-value=4.7e-06  Score=61.96  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=33.4

Q ss_pred             ccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccc-cccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          305 YELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLAR-SLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       305 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      ++.+|..|+|++++|+..|+.+.+.+|+.    .| +.+.+.|..|.+++.+|-+.|..+++..|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllg----rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLG----RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhc----cCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            34455555555555555555555555555    44 45555555555555555555555555555443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.15  E-value=3.5e-06  Score=79.17  Aligned_cols=88  Identities=24%  Similarity=0.301  Sum_probs=77.7

Q ss_pred             CCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHH
Q 015738          276 DRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV  355 (401)
Q Consensus       276 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  355 (401)
                      ..|.++||.|+..+..-++++|++.+++ ++..|..|++|+|.+...|+...+..+++    .|++.+..+..|.+||++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~----~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLK----RGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcc----ccccccccCccCcchhhH
Confidence            3567999999999999999999999998 79999999999999999999999999998    899999999999999999


Q ss_pred             HHHhCChhHHHHH
Q 015738          356 LAAVRPKEFHDVM  368 (401)
Q Consensus       356 A~~~~~~~~~~~L  368 (401)
                      |.+..+.+++-++
T Consensus       729 a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  729 AMEAANADIVLLL  741 (785)
T ss_pred             HhhhccccHHHHH
Confidence            9877665555433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.07  E-value=1.8e-06  Score=81.12  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=73.1

Q ss_pred             CCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          311 RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       311 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      .|.|+||.|+..+...++++|++    .|+++|.+|..|+||+|.+...|+...+..|++ .|++++..+..|++|+++|
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHH
Confidence            57899999999999999999999    899999999999999999999999999988886 5999999999999999999


Q ss_pred             ecc
Q 015738          391 NYG  393 (401)
Q Consensus       391 ~~~  393 (401)
                      .+.
T Consensus       730 ~~~  732 (785)
T KOG0521|consen  730 MEA  732 (785)
T ss_pred             hhh
Confidence            544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.06  E-value=2.7e-06  Score=70.14  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=50.6

Q ss_pred             eEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhh
Q 015738           38 LHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKL   98 (401)
Q Consensus        38 L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~   98 (401)
                      |..|  |+.|..+.|++|++    .|..+|.+|....+||.+|+.+||.++|++|+++||.
T Consensus        40 lcea--cR~GD~d~v~~LVe----tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   40 LCEA--CRAGDVDRVRYLVE----TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHH--hhcccHHHHHHHHH----hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            6778  99999999999998    6899999999999999999999999999999999985

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.97  E-value=4.8e-06  Score=77.95  Aligned_cols=108  Identities=20%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhc-CCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHH
Q 015738          277 RKMTALHLAAGKGDARTVERIISG-NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV  355 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  355 (401)
                      .|++.+|.++..++...++.+++- +.. ....|..|...+|+++ .+.++++.+++..   .|..++.+|..|+||||+
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hfca-~lg~ewA~ll~~~---~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHFCA-ALGYEWAFLPISA---DGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhHhh-hcCCceeEEEEee---cccccccccCCCCcccch
Confidence            556666777666666666666664 222 3445556666666633 3334444444432   456666667777777777


Q ss_pred             HHHhCChhHHHHHHhhcCCCh------hhhhccCcceeeee
Q 015738          356 LAAVRPKEFHDVMNRSTQANY------DAVNKQNVSVRHVF  390 (401)
Q Consensus       356 A~~~~~~~~~~~Ll~~~~~~~------~~~~~~g~t~l~~a  390 (401)
                      |+.+|+..++..|... |++.      ......|.|+-++|
T Consensus       648 Aa~~G~e~l~a~l~~l-ga~~~~~tdps~~~p~g~ta~~la  687 (975)
T KOG0520|consen  648 AAFRGREKLVASLIEL-GADPGAVTDPSPETPGGKTAADLA  687 (975)
T ss_pred             HhhcCHHHHHHHHHHh-ccccccccCCCCCCCCCCchhhhh
Confidence            7777776666666643 3332      22233466666655

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.85  E-value=2.4e-05  Score=73.50  Aligned_cols=131  Identities=15%  Similarity=0.082  Sum_probs=97.7

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHhc-CccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcH
Q 015738          237 KETDQYGWTPIHYAAYYGNYRTVNLLLET-DQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNF  315 (401)
Q Consensus       237 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  315 (401)
                      ......|.+.+|.++..+....++.+++- +..... .+ ..|.-.+|+++ .+..+....++......++.+|..|+||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-ld-~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-LD-RDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh-hc-ccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcc
Confidence            34456789999999999999999999985 433322 22 25566777744 4555666666665555589999999999


Q ss_pred             HHHHHHhCChhHHHHHHhcCCccccc--cccCCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          316 LHYAMVSFHVGQLRNLLENNPLARSL--IDEGDAEGNTPLHVLAAVRPKEFHDVMNR  370 (401)
Q Consensus       316 l~~A~~~~~~~~~~~Ll~~~~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  370 (401)
                      ||+|..+|+..++..|++.....++.  +......|.|+-.+|...|+..+.-+|-+
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            99999999999999999854444443  33345679999999999999888766644

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.40  E-value=0.00021  Score=61.58  Aligned_cols=67  Identities=13%  Similarity=0.003  Sum_probs=52.4

Q ss_pred             ChhHHHHHHhcCCccccc--cccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeee
Q 015738          324 HVGQLRNLLENNPLARSL--IDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       324 ~~~~~~~Ll~~~~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  391 (401)
                      -+..+++|.+.......+  +...+..--|+||||+..|.-+++.+||++ |+|+..+|..|+||++++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccc
Confidence            366778888744332222  333456678999999999999999999988 7999999999999999885

>smart00248 ANK ankyrin repeats

Probab=97.15  E-value=0.0006  Score=34.46  Aligned_cols=28  Identities=43%  Similarity=0.782  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhh
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIERAKLA   99 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~   99 (401)
                      .|.||+|+|+..++.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4789999999999999999999987753

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.97  E-value=0.0017  Score=32.62  Aligned_cols=28  Identities=36%  Similarity=0.553  Sum_probs=24.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 015738          123 EKNTALHEAVSQGNVDVVKILTREDPGY  150 (401)
Q Consensus       123 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  150 (401)
                      .|.||+|+|+..++.++++.|++.+.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3789999999999999999999987753

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.65  E-value=0.0025  Score=55.24  Aligned_cols=69  Identities=23%  Similarity=0.235  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 015738           86 FEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMA  165 (401)
Q Consensus        86 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  165 (401)
                      ...+++|.+++...+..-.            ....+.--.|+||+|+.+|..++|.+||+.|.+ +...|..|+||...+
T Consensus       404 p~~ie~lken~lsgnf~~~------------pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVT------------PEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLS  470 (591)
T ss_pred             hhHHHHHHhcCCccccccc------------ccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCccccc
Confidence            5677778777766533221            223444567999999999999999999999966 778999999999887


Q ss_pred             Hh
Q 015738          166 AE  167 (401)
Q Consensus       166 ~~  167 (401)
                      ..
T Consensus       471 ~n  472 (591)
T KOG2505|consen  471 AN  472 (591)
T ss_pred             cc
Confidence            73

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.41  E-value=0.13  Score=40.35  Aligned_cols=113  Identities=15%  Similarity=0.153  Sum_probs=70.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccC----CCCCcHHHHHHH-
Q 015738          247 IHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVD----NRGCNFLHYAMV-  321 (401)
Q Consensus       247 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~----~~g~t~l~~A~~-  321 (401)
                      |.-|+...+.+-+.-++..-         ....+++.+++..+..+++.+|+..-..  ..+|    ..+.--+.|+.. 
T Consensus       157 ledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f~f--t~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKFNF--TKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhcce--ecchhhhcCcchhhHHHHHhh
Confidence            45577777777666665332         2334777788877888888888765321  1111    112223444433 


Q ss_pred             -hCChhHHHHHHhcCCccccccccC---CCCCCcHHHHHHHhCChhHHHHHHhhcCC
Q 015738          322 -SFHVGQLRNLLENNPLARSLIDEG---DAEGNTPLHVLAAVRPKEFHDVMNRSTQA  374 (401)
Q Consensus       322 -~~~~~~~~~Ll~~~~~~~~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  374 (401)
                       ..+..++++.++.+   .+++|.+   -..|.|-|.-|.++++.+++..||+. ||
T Consensus       226 h~a~~kvL~~Fi~~G---lv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~-GA  278 (284)
T PF06128_consen  226 HSASYKVLEYFINRG---LVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKY-GA  278 (284)
T ss_pred             cCCcHHHHHHHHhcc---ccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHc-Cc
Confidence             34667777777743   3445543   46788888888888888888888866 66

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.25  E-value=0.044  Score=35.51  Aligned_cols=49  Identities=24%  Similarity=0.362  Sum_probs=41.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcC
Q 015738           74 DTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRED  147 (401)
Q Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  147 (401)
                      ...+..|+..|+.|+++.+++.+..                         ....+..|+...+.++++||++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-------------------------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-------------------------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-------------------------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            4568999999999999999976532                         246799999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.20  E-value=0.18  Score=38.29  Aligned_cols=137  Identities=14%  Similarity=0.014  Sum_probs=85.2

Q ss_pred             HHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 015738          210 ALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKG  289 (401)
Q Consensus       210 ~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~  289 (401)
                      .+..|++.  +..+++++.-+.    ....-....+.+..||+..+.++|+|+-+.-...       +-.+.+..|....
T Consensus        49 Ll~HAVk~--nmL~ILqkyke~----L~~~~~~~q~LFElAC~~qkydiV~WI~qnL~i~-------~~~~iFdIA~~~k  115 (192)
T PF03158_consen   49 LLYHAVKY--NMLSILQKYKED----LENERYLNQELFELACEEQKYDIVKWIGQNLHIY-------NPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHc--CcHHHHHHHHHH----hhcchhHHHHHHHHHHHHccccHHHHHhhccCCC-------Cchhhhhhhhhcc
Confidence            34555555  444444443332    2222234667888999999999999996542221       3336778888888


Q ss_pred             CHHHHH----HhhhcCCCCccccCC--CCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChh
Q 015738          290 DARTVE----RIISGNPKCYELVDN--RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKE  363 (401)
Q Consensus       290 ~~~~~~----~Ll~~~~~~~~~~~~--~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  363 (401)
                      +.++..    +++++.... ...|.  --..-|..|+..|-...+...++    .|.+++.      +.|..|+.+++.+
T Consensus       116 DlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlk----ygg~~~~------~vls~Av~ynhRk  184 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLK----YGGNVDI------IVLSQAVKYNHRK  184 (192)
T ss_pred             chhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHH----cCCcccH------HHHHHHHHhhHHH
Confidence            877532    122332211 00010  01135678899999988888888    5555443      8999999999999


Q ss_pred             HHHHHHh
Q 015738          364 FHDVMNR  370 (401)
Q Consensus       364 ~~~~Ll~  370 (401)
                      ++.+++.
T Consensus       185 IL~yfi~  191 (192)
T PF03158_consen  185 ILDYFIR  191 (192)
T ss_pred             HHHHhhc
Confidence            9998874

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.82  E-value=0.34  Score=38.04  Aligned_cols=124  Identities=19%  Similarity=0.169  Sum_probs=74.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 015738           75 TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSA  154 (401)
Q Consensus        75 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  154 (401)
                      -.|.-|+...+.+-+.-++....+                         -.+++-+|+.++..+++-+|+.+-.-  ...
T Consensus       155 isledAV~AsN~~~i~~~VtdKkd-------------------------A~~Am~~si~~~K~dva~~lls~f~f--t~~  207 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKD-------------------------AHQAMWLSIGNAKEDVALYLLSKFNF--TKQ  207 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHH-------------------------HHHHHHHHhcccHHHHHHHHHhhcce--ecc
Confidence            346778888888887777765443                         35789999999999999999975321  011


Q ss_pred             CCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcC-CCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhc
Q 015738          155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENS-TSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK  233 (401)
Q Consensus       155 ~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~  233 (401)
                      |        .+-...+..++-..|.++..  +..++++.+++| +++|..                              
T Consensus       208 d--------v~~~~~~~ydieY~LS~h~a--~~kvL~~Fi~~Glv~vN~~------------------------------  247 (284)
T PF06128_consen  208 D--------VASMEKELYDIEYLLSEHSA--SYKVLEYFINRGLVDVNKK------------------------------  247 (284)
T ss_pred             h--------hhhcCcchhhHHHHHhhcCC--cHHHHHHHHhccccccchh------------------------------
Confidence            1        11111111111112222222  556666666655 333221                              


Q ss_pred             ccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcc
Q 015738          234 NLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQS  268 (401)
Q Consensus       234 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  268 (401)
                         -..-..|.|.|--|+.+++.+++.+|+++|+.
T Consensus       248 ---F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  248 ---FQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             ---hhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence               01224577888888888888898888888864

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.08  E-value=0.6  Score=35.54  Aligned_cols=45  Identities=18%  Similarity=0.118  Sum_probs=31.8

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhh
Q 015738          247 IHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS  299 (401)
Q Consensus       247 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  299 (401)
                      |..|+..|-.+.+...+..|.+..        .+.|..|+.+++..++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~--------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVD--------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccc--------HHHHHHHHHhhHHHHHHHhhc
Confidence            556777777777777777776652        167777777777777777654

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.72  E-value=0.39  Score=31.09  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=10.4

Q ss_pred             HHHHHHHhCChhHHHHHHhhc
Q 015738          352 PLHVLAAVRPKEFHDVMNRST  372 (401)
Q Consensus       352 ~L~~A~~~~~~~~~~~Ll~~~  372 (401)
                      .+..|+..-+.+++++|+++.
T Consensus        35 ~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen   35 CLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhhHHHHHHHHHhc
Confidence            355555555555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	401
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-15
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-12
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-10
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-10
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-10
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		8e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-06
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-05
1uoh_A	226	Human Gankyrin Length = 226		4e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		6e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 119/288 (41%), Gaps = 49/288 (17%)
Query: 29  LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEI 88
           L   A +T LHI       E V     +E  + C      +  KG TPLH+AAK+G   +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 89  VRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDP 148
             +L+ER       D  P +                 T LH AV   N+D+VK+L     
Sbjct: 162 AELLLER-------DAHPNAA-----------GKNGLTPLHVAVHHNNLDIVKLLLPRG- 202
Query: 149 GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD------------------MV 190
           G P+S    G TPL++AA+ +N+ ++ R LL+   SA+ +                  MV
Sbjct: 203 GSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPIHYA 250
             LL    + +    +G T LH  A                       T + G+TP+H A
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQEGH---VPVADVLIKHGVMVDATTRMGYTPLHVA 318
Query: 251 AYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
           ++YGN + V  LL+  Q+  N A      + LH AA +G    V  ++
Sbjct: 319 SHYGNIKLVKFLLQ-HQADVN-AKTKLGYSPLHQAAQQGHTDIVTLLL 364

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 127/311 (40%), Gaps = 62/311 (19%)
Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIE-RAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           N K +TPLH+AA+ GH E+ + L++ +AK+  +  ++                    T L
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-------------------QTPL 84
Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS---- 184
           H A   G+ ++VK+L  E+   P  A   G TPL++AA  E   + +  LLE   S    
Sbjct: 85  HCAARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAR-EGHVETVLALLEKEASQACM 142
Query: 185 -----------ASFDMVLA---LLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXX 230
                      A +  V     LLE     +  G NG T LH A   +  +D        
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN-NLDIVKLLLPR 201
Query: 231 XXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD 290
                    +  G+TP+H AA          LL+   SA+  A+  + +T LHLAA +G 
Sbjct: 202 GGSPHSPAWN--GYTPLHIAAKQNQVEVARSLLQYGGSAN--AESVQGVTPLHLAAQEGH 257
Query: 291 ARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEG---DA 347
           A  V  ++S       L +  G   LH      HV          P+A  LI  G   DA
Sbjct: 258 AEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHV----------PVADVLIKHGVMVDA 306
Query: 348 E---GNTPLHV 355
               G TPLHV
Sbjct: 307 TTRMGYTPLHV 317

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 99/261 (37%), Gaps = 73/261 (27%)
Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           V+E+L   P+LLLQ +  G  PLH +  F   EI   L+ + +     D   +SG  PF 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF- 76
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--YSANNYGKTPLYMAAEYENRS 172
                         H A S GN++VVK L  + P  P      N G T L++A       
Sbjct: 77  --------------HIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAV------ 115
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
                         F++   L+EN  SV  +                             
Sbjct: 116 ----------GKKWFEVSQFLIENGASVRIK----------------------------- 136
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDA 291
                  D++   P+H AA  G+ + + LL    +SA N  DK       H LA G GDA
Sbjct: 137 -------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 292 RTVERIISGNPKCYELVDNRG 312
             +  ++      Y+LVDN+G
Sbjct: 190 AVL--LVEKYGAEYDLVDNKG 208

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 99/261 (37%), Gaps = 73/261 (27%)
Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           V+E+L   P+LLLQ +  G  PLH +  F   EI   L+ + +     D   +SG  PF 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF- 76
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--YSANNYGKTPLYMAAEYENRS 172
                         H A S GN++VVK L  + P  P      N G T L++A       
Sbjct: 77  --------------HIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAV------ 115
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
                         F++   L+EN  SV  +                             
Sbjct: 116 ----------GKKWFEVSQFLIENGASVRIK----------------------------- 136
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDA 291
                  D++   P+H AA  G+ + + LL    +SA N  DK       H LA G GDA
Sbjct: 137 -------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 292 RTVERIISGNPKCYELVDNRG 312
             +  ++      Y+LVDN+G
Sbjct: 190 AVL--LVEKYGAEYDLVDNKG 208

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 99/261 (37%), Gaps = 73/261 (27%)
Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           V+E+L   P+LLLQ +  G  PLH +  F   EI   L+ + +     D   +SG  PF 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF- 76
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--YSANNYGKTPLYMAAEYENRS 172
                         H A S GN++VVK L  + P  P      N G T L++A       
Sbjct: 77  --------------HIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAV------ 115
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
                         F++   L+EN  SV  +                             
Sbjct: 116 ----------GKKWFEVSQFLIENGASVRIK----------------------------- 136
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDA 291
                  D++   P+H AA  G+ + + LL    +SA N  DK       H LA G GDA
Sbjct: 137 -------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 292 RTVERIISGNPKCYELVDNRG 312
             +  ++      Y+LVDN+G
Sbjct: 190 AVL--LVEKYGAEYDLVDNKG 208

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 33/176 (18%)
Query: 59  LEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKL----AQRGDEEPESGVEPFR 114
           L K  AL+   +A+G T LHLAAK GH+E+V+ L+   ++       G   P      ++
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 115 QM------------IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPL 162
            +            I + +NE+N  LH A   G VD+ +IL        ++ N +G +PL
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPL 181
Query: 163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS 218
           ++AA  ENR               +D V+  L   + V+ +   G+T L  A++ S
Sbjct: 182 HIAAR-ENR---------------YDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 34/211 (16%)
Query: 75  TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPES---------GVEPFRQMIRM------ 119
           +PLH AA+ GH +I  +L++         E+  +          +E  + +I+       
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLL 179
            + E +T LH A  +G+ +VV+ L           ++ G TP+  A EY++         
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH--------- 123
Query: 180 ENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXET 239
                   D+V  LL   + ++         LH AA  S  VD A               
Sbjct: 124 -------VDLVKLLLSKGSDINIRDNEENICLHWAAF-SGCVDIAEILLAAKCDLHA--V 173
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSAS 270
           + +G +P+H AA    Y  V L L  D   +
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 23/187 (12%)
Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
           +M +  K + LH A   G+VD+  +L +        + +  +TPL  AAE  +       
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNH------- 56
Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXX 237
                     + V  L++    V  +   G T LH AA +                    
Sbjct: 57  ---------LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHY--EVVQYLLSNGQMDVN 105
Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
             D  GWTP+ +A  Y +   V LLL +  S  NI D +  +  LH AA  G     E +
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLL-SKGSDINIRDNEENI-CLHWAAFSGCVDIAEIL 163
Query: 298 ISGNPKC 304
           ++   KC
Sbjct: 164 LAA--KC 168

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 20/120 (16%)
Query: 48  ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
           EN +   V+++LE   A +   ++ G TPLHLAA+ GH E+V++L+ +            
Sbjct: 13  ENGNKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ------------ 59
Query: 108 SGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE 167
            G +P  +     +++  T LH A   G+ +VVK+L  +    P + ++ GKTPL++AAE
Sbjct: 60  -GADPNAK-----DSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAE 112

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           S++ + L+E   + + D V  LLEN   V+    +GKT LH AA                
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGH---KEVVKLLLS 58
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
                   D  G TP+H AA  G+   V LLL +  +  N  D D K T LHLAA  G  
Sbjct: 59  QGADPNAKDSDGKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGK-TPLHLAAENGHK 116
Query: 292 RTVERIIS 299
             V+ ++S
Sbjct: 117 EVVKLLLS 124

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 37/144 (25%)
Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G TPLHLAA+ GH E+V++L+             E+G +     +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL-------------EAGAD-----VNAKDKNGRTPLHLAA 43
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
             G+++VVK+L   + G   +A +  G+TPL++AA                 +   ++V 
Sbjct: 44  RNGHLEVVKLLL--EAGADVNAKDKNGRTPLHLAAR----------------NGHLEVVK 85
Query: 192 ALLENSTSVSHEGPNGKTALHAAA 215
            LLE    V+ +  NG+T LH AA
Sbjct: 86  LLLEAGADVNAKDKNGRTPLHLAA 109

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 38/146 (26%)
Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           VNA+   G TPLHLAA FGH EIV VL++        D     GV P             
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD---SLGVTP------------- 83
Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
             LH A  +G++++V++L +       S +++G TPL++AA+        RG LE     
Sbjct: 84  --LHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAK--------RGHLE----- 127
Query: 186 SFDMVLALLENSTSVSHEGPNGKTAL 211
              +V  LL+N   V+ +   GKTA 
Sbjct: 128 ---IVEVLLKNGADVNAQDKFGKTAF 150

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARTVERII 298
           D  GWTP+H AA++G+   V +LL   ++ +++  KD   +T LHLAA +G    VE ++
Sbjct: 44  DFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL 100
Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN 334
             N       D+ G   LH A    H+  +  LL+N
Sbjct: 101 K-NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           SD+ R LLE   +   D V  L+ N   V+     G T LH AA   ++           
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAA---YSGHLEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
                  +D +G+TP+H AAY+G+   V +LL+      N  D D  MT LHLAA  G  
Sbjct: 69  HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSD-GMTPLHLAAKWGYL 126
Query: 292 RTVERII 298
             VE ++
Sbjct: 127 EIVEVLL 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
           +D  GWTP+H AAY+G+   V +LL+     +  AD    +T LHLAA +G    VE ++
Sbjct: 43  SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN--ADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 299 SGNPKCYELVDNRGCNFLHYA 319
             N       D+ G   LH A
Sbjct: 101 K-NGADVNANDHNGFTPLHLA 120

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           SD+ + LLE   +   D V  L+ N   V+ E  +GKT LH AA++              
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
                   D+ G TP+H AA YG+   V +LL+     +  A      T LHLAA  G  
Sbjct: 69  HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVN--ATDTYGFTPLHLAADAGHL 126
Query: 292 RTVERII 298
             VE ++
Sbjct: 127 EIVEVLL 133

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 45/224 (20%)
Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           GDTPLH+A   G+   V  L+    L Q+G  E           + + NN + T LH AV
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLV---NLFQQGGRE-----------LDIYNNLRQTPLHLAV 54
Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA 192
                 VV++L       P + + +G+T  ++A E+ + +  LR LL++    + D+   
Sbjct: 55  ITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPT-CLRALLDSAAPGTLDL--- 109
Query: 193 LLENSTSVSHEGPN--GKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETD----QYGWTP 246
                     E  N  G TALH       AV+T              + D    + G +P
Sbjct: 110 ----------EARNYDGLTALH------VAVNTECQETVQLLLERGADIDAVDIKSGRSP 153
Query: 247 IHYAAYYGNYRTVNLLLETDQSASNI-ADKDRKMTALHLAAGKG 289
           + +A    +   V LLL   Q  +N+ A      +ALH A+G+G
Sbjct: 154 LIHAVENNSLSMVQLLL---QHGANVNAQMYSGSSALHSASGRG 194

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 40/148 (27%)
Query: 68  QVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
            VNA+   GDTPLHLAA+ GH EIV VL+             ++G +     +  ++   
Sbjct: 39  DVNAEDTYGDTPLHLAARVGHLEIVEVLL-------------KNGAD-----VNALDFSG 80
Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRSDMLRGLLENRT 183
           +T LH A  +G++++V++L +   G   +A++  G TPL++AA+                
Sbjct: 81  STPLHLAAKRGHLEIVEVLLK--YGADVNADDTIGSTPLHLAAD---------------- 122
Query: 184 SASFDMVLALLENSTSVSHEGPNGKTAL 211
           +   ++V  LL+    V+ +   GKTA 
Sbjct: 123 TGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 22/109 (20%)
Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G TPLHLAAK GH EIV VL++                  +   +   +N   T LH A 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLK------------------YGADVNAWDNYGATPLHLAA 88
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLE 180
             G++++V++L +   G   +A +Y G TPL++AA Y+   +++  LL+
Sbjct: 89  DNGHLEIVEVLLKH--GADVNAKDYEGFTPLHLAA-YDGHLEIVEVLLK 134

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 48  ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
           EN +   V++++E   A +   ++ G TPLH AAK GH EIV++LI +       D +  
Sbjct: 13  ENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 108 SGV-----EPFRQMIRMV----------NNEKNTALHEAVSQGNVDVVKILTREDPGYPY 152
           + +     E  +++++++          +++  T LH A  +G+ ++VK+L  +      
Sbjct: 72  TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 153 SANNYGKTPLYMAAEYEN 170
           S ++ G+TPL +A E+ N
Sbjct: 132 SDSD-GRTPLDLAREHGN 148

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           S++ + L+E   + + D V  L+EN   V+    +G+T LH AA                
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH---KEIVKLLIS 58
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
                   D  G TP+HYAA  G+   V LL+ +  +  N  D D + T LH AA +G  
Sbjct: 59  KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGR-TPLHYAAKEGHK 116
Query: 292 RTVERIIS 299
             V+ +IS
Sbjct: 117 EIVKLLIS 124

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 37/141 (26%)
Query: 72  KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
           +G TPLHLAA  GH EIV VL++                      +   + +  T LH A
Sbjct: 46  QGSTPLHLAAWIGHPEIVEVLLKHGA------------------DVNARDTDGWTPLHLA 87
Query: 132 VSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV 190
              G++++V++L +   G   +A + YG TPL++AA+        RG LE        +V
Sbjct: 88  ADNGHLEIVEVLLKY--GADVNAQDAYGLTPLHLAAD--------RGHLE--------IV 129
Query: 191 LALLENSTSVSHEGPNGKTAL 211
             LL++   V+ +   GKTA 
Sbjct: 130 EVLLKHGADVNAQDKFGKTAF 150

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           SD+ + LLE   +   D V  L+ N   V+     G T LH AA      +         
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHP-EIVEVLLKHG 70
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
                 +TD  GWTP+H AA  G+   V +LL+    A   A     +T LHLAA +G  
Sbjct: 71  ADVNARDTD--GWTPLHLAADNGHLEIVEVLLKY--GADVNAQDAYGLTPLHLAADRGHL 126
Query: 292 RTVERII 298
             VE ++
Sbjct: 127 EIVEVLL 133

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 20/120 (16%)
Query: 48  ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
           EN +   V+++LE   A     ++ G TPLH AA+ GH EIV++L+ +            
Sbjct: 13  ENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSK------------ 59
Query: 108 SGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAE 167
            G +P  +     +++  T LH A   G+ ++VK+L  +    P + ++ G+TPL+ AAE
Sbjct: 60  -GADPNAK-----DSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAE 112

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
           L EA   GN D VK L  E+   P ++++ G+TPL+ AAE  ++                
Sbjct: 8   LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHK---------------- 50
Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXXXXXXXETDQYGWTPI 247
           ++V  LL      + +  +G+T LH AA                        D  G TP+
Sbjct: 51  EIVKLLLSKGADPNAKDSDGRTPLHYAAENGH---KEIVKLLLSKGADPNAKDSDGRTPL 107
Query: 248 HYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
           HYAA  G+   V LLL +  +  N +D D + T L LA   G+   V+
Sbjct: 108 HYAAENGHKEIVKLLL-SKGADPNTSDSDGR-TPLDLAREHGNEEIVK 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 37/140 (26%)
Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G TPLH+AA  GH EIV VL+              +G +     +  V+    T LH A 
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLL-------------RNGAD-----VNAVDTNGTTPLHLAA 76
Query: 133 SQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
           S G++++V++L +   G   +A +  G TPLY+AA +                   ++V 
Sbjct: 77  SLGHLEIVEVLLKY--GADVNAKDATGITPLYLAAYW----------------GHLEIVE 118
Query: 192 ALLENSTSVSHEGPNGKTAL 211
            LL++   V+ +   GKTA 
Sbjct: 119 VLLKHGADVNAQDKFGKTAF 138

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPES----------GVEPFRQMIR 118
           ++ +G + +HLAA+FGH  IV  LI + +     D+   +           V+P R ++ 
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 119 M---VN----NEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYEN 170
               VN      KNTALH AV  GN  V+ +L   + G    A N  G++ L +A + +N
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL--EAGANVDAQNIKGESALDLAKQRKN 222
Query: 171 RSDMLRGLLENRTSASFD 188
              M+  L E R +  +D
Sbjct: 223 VW-MINHLQEARQAKGYD 239

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 37/143 (25%)
Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
           +A G TPLHLAA  GH EIV VL++        D    +G+ P R               
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD---HAGMTPLRL-------------- 86
Query: 130 EAVSQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
            A   G++++V++L +   G   +AN+  G TPL++AA +                   +
Sbjct: 87  -AALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMF----------------GHLE 127
Query: 189 MVLALLENSTSVSHEGPNGKTAL 211
           +V  LL+N   V+ +   GKTA 
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAF 150

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 27/120 (22%)
Query: 57  EILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF 113
           E+L K  A    VNAK   G TPLHLAA+ GH EIV VL+             ++G +  
Sbjct: 52  EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-- 93
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENRS 172
              +   + +  T LH A  +G++++V++L +   G   +A + +GKTP  +A +  N  
Sbjct: 94  ---VNAKDKDGYTPLHLAAREGHLEIVEVLLK--AGADVNAQDKFGKTPFDLAIDNGNED 148

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
           D+ + LLE   +   D V  L+ N   V+ +  +G T LH AA                 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGH---LEIVEVLLKA 57
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR 292
                  D+ G+TP+H AA  G+   V +LL+      N  DKD   T LHLAA +G   
Sbjct: 58  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLE 115
Query: 293 TVERIIS 299
            VE ++ 
Sbjct: 116 IVEVLLK 122

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           SD+ + LLE   +   D V  L+ N   V+ +  +G T LH AA R   ++         
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAG 70
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
                 + D  G+TP+H AA  G+   V +LL+      N  DKD   T LHLAA +G  
Sbjct: 71  ADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHL 126
Query: 292 RTVERII 298
             VE ++
Sbjct: 127 EIVEVLL 133

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 21/95 (22%)
Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G TPLHLAA+ GH E+V++L+             E+G +     +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL-------------EAGAD-----VNAKDKNGRTPLHLAA 43
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAA 166
             G+++VVK+L   + G   +A +  G+TPL++AA
Sbjct: 44  RNGHLEVVKLLL--EAGADVNAKDKNGRTPLHLAA 76

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 27/113 (23%)
Query: 57  EILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF 113
           E+L K  A    VNAK   G TPLHLAA+ GH EIV VL+             ++G +  
Sbjct: 52  EVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-- 93
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMA 165
              +   + +  T LH A  +G++++V++L +   G   +A + +GKTP  +A
Sbjct: 94  ---VNAKDKDGYTPLHLAAREGHLEIVEVLLK--AGADVNAQDKFGKTPFDLA 141

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
           D+ + LLE   +   D V  L+ N   V+ +  +G T LH AA R   ++          
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGA 59
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR 292
                + D  G+TP+H AA  G+   V +LL+      N  DKD   T LHLAA +G   
Sbjct: 60  DVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLE 115
Query: 293 TVERIIS 299
            VE ++ 
Sbjct: 116 IVEVLLK 122

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 30/206 (14%)
Query: 104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPL 162
           EE +  +   + +    + +  TALH A S G+ ++V+ L +   G P +  ++ G +PL
Sbjct: 20  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS---F 219
           ++AA                ++   ++V ALL     V+    NG T LH AA ++    
Sbjct: 78  HIAA----------------SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 121
Query: 220 AVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKM 279
           AV                  D Y  T +H AA  GN + +++LL   ++++NI D +   
Sbjct: 122 AV------MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQDTEGN- 173
Query: 280 TALHLAAGKGDARTVERIISGNPKCY 305
           T LHLA  +      + ++S     Y
Sbjct: 174 TPLHLACDEERVEEAKLLVSQGASIY 199

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 48  ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE 107
           EN +   V++++E   A +   ++ G TPLH AA+ GH E+V++LI +       D +  
Sbjct: 13  ENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD-- 69
Query: 108 SGVEPF--------RQMIRMV----------NNEKNTALHEAVSQGNVDVVKILTREDPG 149
            G  P         +++++++          +++  T LH A   G+ +VVK+L  +   
Sbjct: 70  -GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 150 YPYSANNYGKTPLYMAAEYEN 170
              S ++ G+TPL +A E+ N
Sbjct: 129 VNTS-DSDGRTPLDLAREHGN 148

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           S++ + L+E   + + D V  L+EN   V+    +G+T LH AA                
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGH---KEVVKLLIS 58
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
                   D  G TP+H+AA  G+   V LL+ +  +  N  D D + T LH AA  G  
Sbjct: 59  KGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGR-TPLHHAAENGHK 116
Query: 292 RTVERIIS 299
             V+ +IS
Sbjct: 117 EVVKLLIS 124

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 33/187 (17%)
Query: 52  TKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERA---KLAQRGDEEP-- 106
           TK V+EIL+     + +V+ +G+TPL++A      EI + LI+R     L     + P  
Sbjct: 18  TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYL 77
Query: 107 ----ESGVEPFRQMIRMVNNEKN-------TALHEAVSQGNVDVVKIL---TREDPGYPY 152
               +   E    M++    + N        AL  A  +G++D VK+L    RED  +  
Sbjct: 78  YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ- 136
Query: 153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH 212
             N++G T L  A           GL E       D+V  L+EN    S +  +G+TA+ 
Sbjct: 137 --NDFGYTALIEAV----------GLREGNQLYQ-DIVKLLMENGADQSIKDNSGRTAMD 183
Query: 213 AAAMRSF 219
            A  + +
Sbjct: 184 YANQKGY 190

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 30/206 (14%)
Query: 104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPL 162
           EE +  +   + +    + +  TALH A S G+ ++V+ L +   G P +  ++ G +PL
Sbjct: 21  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 78
Query: 163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS---F 219
           ++AA                ++   ++V ALL     V+    NG T LH AA ++    
Sbjct: 79  HIAA----------------SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 122
Query: 220 AVDTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKM 279
           AV                  D Y  T +H AA  GN + +++LL   ++++NI D +   
Sbjct: 123 AV------MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQDTEGN- 174
Query: 280 TALHLAAGKGDARTVERIISGNPKCY 305
           T LHLA  +      + ++S     Y
Sbjct: 175 TPLHLACDEERVEEAKLLVSQGASIY 200

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           SD+ + LLE   +   D V  L+ N   V+     G T LH AA                
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 291
                   D  G TP+H AA++G+   V +LL+     +  A  D  +T LHLAA +G  
Sbjct: 69  NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN--AKDDNGITPLHLAANRGHL 126
Query: 292 RTVERII 298
             VE ++
Sbjct: 127 EIVEVLL 133

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
            D  GWTP+H AAY+G+   V +LL+     +  A      T LHLAA  G    VE ++
Sbjct: 43  ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN--AYDTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE 333
             N       D+ G   LH A    H+  +  LL+
Sbjct: 101 K-NGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           + E+L K  A +  ++  G TPLHLAA  GH EIV VL++                    
Sbjct: 62  IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA----------------- 104
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
             +  V+   +T LH A   G++++V++L +   G   +A + +GKT   ++ +  N 
Sbjct: 105 -DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARTVER 296
           TD  G TP+H AA YG+   V +LL+   D +A +I       T LHLAA  G    VE 
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS----TPLHLAALIGHLEIVEV 98
Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENN 335
           ++         VD  G   LH A +  H+  +  LL++ 
Sbjct: 99  LLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHG 136

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPLYMAAEYENRS 172
           + +    + +  TALH A S G+ ++V+ L +   G P +  ++ G +PL++AA      
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAA------ 81
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS---FAVDTAXXXXX 229
                     ++   ++V ALL     V+    NG T LH AA ++    AV        
Sbjct: 82  ----------SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV------ML 125
Query: 230 XXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA 286
                     D Y  T +H AA  GN + V++LL   ++++NI D +   T LHLA 
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGN-TPLHLAC 180

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 37/140 (26%)
Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G TPLHL    GH EI+ VL++ A      D   +SG  P               LH A 
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASD---KSGWTP---------------LHLAA 88
Query: 133 SQGNVDVVKILTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
            +G++++V++L +   G   +A +Y G TPL++AAE                    ++V 
Sbjct: 89  YRGHLEIVEVLLK--YGADVNAMDYQGYTPLHLAAE----------------DGHLEIVE 130
Query: 192 ALLENSTSVSHEGPNGKTAL 211
            LL+    V+ +   GKTA 
Sbjct: 131 VLLKYGADVNAQDKFGKTAF 150

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAA----------MRSFAV 221
           SD+ + LLE   +   D V  L+ N   V+     G T LH             +  +A 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 222 DTAXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKM 279
           D                +D+ GWTP+H AAY G+   V +LL+   D +A +     +  
Sbjct: 72  DV-------------NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY----QGY 114
Query: 280 TALHLAAGKGDARTVERII 298
           T LHLAA  G    VE ++
Sbjct: 115 TPLHLAAEDGHLEIVEVLL 133

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           + E+L K  A +  ++  G TPLHLAA  GH EIV VL++              G +   
Sbjct: 62  IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH-------------GAD--- 105
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
             +  V+   +T LH A   G++++V++L +   G   +A + +GKT   ++ +  N 
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARTVER 296
           TD  G TP+H AA YG+   V +LL+   D +A +I       T LHLAA  G    VE 
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS----TPLHLAALIGHLEIVEV 98
Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENN 335
           ++         VD  G   LH A +  H+  +  LL++ 
Sbjct: 99  LLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHG 136

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPLYMAAEYENRS 172
           + +    + +  TALH A S G+ ++V+ L +   G P +  ++ G +PL++AA      
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAA------ 81
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS---FAVDTAXXXXX 229
                     ++   ++V ALL     V+    NG T LH AA ++    AV        
Sbjct: 82  ----------SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV------ML 125
Query: 230 XXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA 286
                     D Y  T +H AA  GN + V++LL   ++++NI D +   T LHLA 
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGN-TPLHLAC 180

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 36  TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIER 95
           T LH+  +S   E V      E+L K  A +   +  G TPLHLAA  GH EIV VL++ 
Sbjct: 49  TPLHLAAVSGHLEIV------EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK- 101
Query: 96  AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN 155
                            +   +   +   +T LH A  +G++++V++L +   G   +A 
Sbjct: 102 -----------------YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY--GADVNAQ 142
Query: 156 N-YGKTPLYMAAEYENR 171
           + +GKT   ++ +  N 
Sbjct: 143 DKFGKTAFDISIDNGNE 159

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXX 231
           SD+ + LLE   +   D V  L+ N   V+     G T LH AA+               
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGH---LEIVEVLLK 68
Query: 232 XXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKG 289
                   D YG+TP+H AA  G+   V +LL+   D +A ++       T LHLAA +G
Sbjct: 69  HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----TPLHLAADEG 124
Query: 290 DARTVERII 298
               VE ++
Sbjct: 125 HLEIVEVLL 133

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 85/239 (35%), Gaps = 65/239 (27%)
Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
           N  G T LH A    + ++V+ L+E                      I   +NE    LH
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGA------------------NINQPDNEGWIPLH 111
Query: 130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYM----------------------AAE 167
            A S G +D+ + L  +   +  + N+ G TPL +                      AA 
Sbjct: 112 AAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Query: 168 YENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXX 227
            E    MLR   +   S   +           V H   +G TALH AA + +   T    
Sbjct: 171 KEEERIMLRDARQWLNSGHIN----------DVRH-AKSGGTALHVAAAKGY---TEVLK 216
Query: 228 XXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE----------TDQSASNIADKD 276
                       D  GWTP+H AA++G      +L+E            Q+A ++AD+D
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAXXXXXXXX 232
           D+ + LLE   +   D V  L+ N   V+    NG T LH AA                 
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANG---QLEIVEVLLKN 61
Query: 233 XXXXXETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDA 291
                 +D  G TP+H AAY G+   V +LL   +  +++   DR   T LHLAA  G  
Sbjct: 62  GADVNASDSAGITPLHLAAYDGHLEIVEVLL---KHGADVNAYDRAGWTPLHLAALSGQL 118
Query: 292 RTVERII 298
             VE ++
Sbjct: 119 EIVEVLL 125

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 2   DLNFFKAASAGNSEPFKDME-------RDVIERLLTAKAKNTILHINIISSERENVSTKF 54
           D    +AA AG+ E  K +        RD+  R      ++T LH    ++    VS   
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR------QSTPLHF---AAGYNRVSV-- 57
Query: 55  VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE 111
           VE +L+        V+AK   G  PLH A  +GH+E+  +L++                 
Sbjct: 58  VEYLLQHGA----DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG--------------- 98
Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYE-N 170
               ++ + +  K T LHEA ++G  ++ K+L +     P   N  G TPL +  + + +
Sbjct: 99  ---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDTD 154
Query: 171 RSDMLRG 177
             D+LRG
Sbjct: 155 IQDLLRG 161

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 2   DLNFFKAASAGNSEPFKDME-------RDVIERLLTAKAKNTILHINIISSERENVSTKF 54
           D    +AA AG+ E  K +        RD+  R      ++T LH    ++    VS   
Sbjct: 13  DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR------QSTPLHF---AAGYNRVSV-- 61
Query: 55  VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE 111
           VE +L+        V+AK   G  PLH A  +GH+E+  +L++                 
Sbjct: 62  VEYLLQHGA----DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG--------------- 102
Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYE-N 170
               ++ + +  K T LHEA ++G  ++ K+L +     P   N  G TPL +  + + +
Sbjct: 103 ---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDTD 158
Query: 171 RSDMLRG 177
             D+LRG
Sbjct: 159 IQDLLRG 165

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 2   DLNFFKAASAGNSEPFKDME-------RDVIERLLTAKAKNTILHINIISSERENVSTKF 54
           D    +AA AG+ E  K +        RD+  R      ++T LH    ++    VS   
Sbjct: 11  DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR------QSTPLHF---AAGYNRVSV-- 59
Query: 55  VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE 111
           VE +L+        V+AK   G  PLH A  +GH+E+  +L++                 
Sbjct: 60  VEYLLQHGA----DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG--------------- 100
Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYE-N 170
               ++ + +  K T LHEA ++G  ++ K+L +     P   N  G TPL +  + + +
Sbjct: 101 ---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDTD 156
Query: 171 RSDMLRG 177
             D+LRG
Sbjct: 157 IQDLLRG 163

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 21/92 (22%)
Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF--------RQMIRMV- 120
           NA    PLHLA + GHF++V+ L++      + D    SG  P          +++ ++ 
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD---LSGNTPLIYACSGGHHELVALLL 172
Query: 121 ---------NNEKNTALHEAVSQGNVDVVKIL 143
                    NN+ NTALHEAV + +V VV++L
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELL 204

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERII 298
           TD  G +P+H AA YG++ T  +LL    S       DR  T LH+AA +G A  VE ++
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLL 87

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           + E+L K  A +   +  G TPLHLAA  GH EIV VL++                    
Sbjct: 62  IVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA----------------- 104
Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN-YGKTPLYMAAEYENR 171
             +   +N+ +T LH A   G++++V++L +   G   +A + +GKT   ++ +  N 
Sbjct: 105 -DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 37/221 (16%)
Query: 44  SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGD 103
           +SE E  +   + + + +  +L  Q +  G+T LHLAA++   +  + L+E +  A    
Sbjct: 28  NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN--- 84
Query: 104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLY 163
                          + +N   T LH AVS     V +IL R       +  + G TPL 
Sbjct: 85  ---------------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT 223
           +AA        + G+LE+           L+ +   V+     GK+ALH AA  +     
Sbjct: 130 LAARL-----AVEGMLED-----------LINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 224 AXXXXXXXXXXXXXETDQYGWTPIHYAAYYGNYRTVNLLLE 264
                           ++   TP+  AA  G+Y T  +LL+
Sbjct: 174 VVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLD 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-32
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-31
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-27
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-18
2rfa_A	232	Transient receptor potential cation channel subfa	3e-27
2rfa_A	232	Transient receptor potential cation channel subfa	6e-27
2rfa_A	232	Transient receptor potential cation channel subfa	8e-19
2rfa_A	232	Transient receptor potential cation channel subfa	1e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-21
2pnn_A	273	Transient receptor potential cation channel subfa	6e-27
2pnn_A	273	Transient receptor potential cation channel subfa	1e-22
2pnn_A	273	Transient receptor potential cation channel subfa	6e-18
2pnn_A	273	Transient receptor potential cation channel subfa	1e-16
2pnn_A	273	Transient receptor potential cation channel subfa	9e-10
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-05
2etb_A	256	Transient receptor potential cation channel subfam	5e-26
2etb_A	256	Transient receptor potential cation channel subfam	3e-22
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-21
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (375), Expect = 2e-40
 Identities = 78/302 (25%), Positives = 117/302 (38%), Gaps = 55/302 (18%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
            LLQ     N      +TPLH+AA+ GH E+ + L++                +     +
Sbjct: 32  NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-------------KAK-----V 73

Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
                +  T LH A   G+ ++VK+L   +   P  A   G TPL++AA   +       
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNA-NPNLATTAGHTPLHIAAREGHV------ 126

Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIK 237
                     + VLALLE   S +     G T LH AA     V  A  +LL ++     
Sbjct: 127 ----------ETVLALLEKEASQACMTKKGFTPLHVAAKYGK-VRVA--ELLLERDAHPN 173

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVER 296
              + G TP+H A ++ N   V LLL   +  S +    +   T LH+AA +        
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLP--RGGSPHSPAWN-GYTPLHIAAKQNQVEVARS 230

Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL 356
           ++            +G   LH A    H   +  LL       +  + G+  G TPLH L
Sbjct: 231 LLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQ----ANGNLGNKSGLTPLH-L 284

Query: 357 AA 358
            A
Sbjct: 285 VA 286

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (375), Expect = 2e-40
 Identities = 83/296 (28%), Positives = 120/296 (40%), Gaps = 55/296 (18%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
                  G TPLH+A+  GH  IV+ L++R             G         + N +  
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQR-------------GAS-----PNVSNVKVE 48

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           T LH A   G+ +V K L +       +     +TPL+ AA   +               
Sbjct: 49  TPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAARIGH--------------- 92

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
             +MV  LLEN+ + +     G T LH AA     V+T     L +K+       + G+T
Sbjct: 93  -TNMVKLLLENNANPNLATTAGHTPLHIAAREGH-VETV--LALLEKEASQACMTKKGFT 148

Query: 246 PIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GNP 302
           P+H AA YG  R   LLLE  + A  N A K+  +T LH+A    +   V+ ++   G+P
Sbjct: 149 PLHVAAKYGKVRVAELLLE--RDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGSP 205

Query: 303 KCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                    G   LH A     V   R+LL+         +    +G TPLH LAA
Sbjct: 206 ---HSPAWNGYTPLHIAAKQNQVEVARSLLQYG----GSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  143 bits (362), Expect = 1e-38
 Identities = 73/299 (24%), Positives = 116/299 (38%), Gaps = 51/299 (17%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
           LLL+     NA    G TPLH+A    + +IV++L+ R             G        
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-------------GGS-----P 205

Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
                   T LH A  Q  V+V + L +   G   + +  G TPL++AA+  +       
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHA------ 258

Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIK 237
                     +MV  LL    + +    +G T LH  A     V  A   +L K   ++ 
Sbjct: 259 ----------EMVALLLSKQANGNLGNKSGLTPLHLVAQEGH-VPVA--DVLIKHGVMVD 305

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVER 296
            T + G+TP+H A++YGN + V  LL+    A  N   K    + LH AA +G    V  
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQ--HQADVNAKTKL-GYSPLHQAAQQGHTDIVTL 362

Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
           ++       E V + G   L  A    ++  + ++L+      S +   D    +    
Sbjct: 363 LLKNGASPNE-VSSDGTTPLAIAKRLGYI-SVTDVLKVVTDETSFVLVSDKHRMSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  118 bits (298), Expect = 1e-29
 Identities = 56/229 (24%), Positives = 85/229 (37%), Gaps = 46/229 (20%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
            LLQ     NA+   G TPLHLAA+ GH E+V +L+ +                      
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-------------QAN-----G 271

Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
            + N    T LH    +G+V V  +L +       +    G TPL++A+ Y N       
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGN------- 323

Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIK 237
                      +V  LL++   V+ +   G + LH AA +    D     LL K      
Sbjct: 324 ---------IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH-TDIV--TLLLKNGASPN 371

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDR-KMTALHLA 285
           E    G TP+  A   G     ++L       S +   D+ +M+     
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  144 bits (365), Expect = 2e-40
 Identities = 57/293 (19%), Positives = 92/293 (31%), Gaps = 34/293 (11%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           V   GDT LHLA    H   +  L+                     + + + N+   TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF-------------SAGH--EYLDLQNDLGQTAL 49

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
           H A   G    V+ L     G    A   G T L++A            LL+ R   S  
Sbjct: 50  HLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHLACRV-RAHTCACVLLQPR--PSHP 105

Query: 189 MVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIH 248
              +    + S               +  +   +       E  +  ++  +  G TP+H
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE--PRDEDWRLQLEAENYDGHTPLH 163

Query: 249 YAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GNPKCY 305
            A  + +   V LL +    A  N  +     T LHLA     A  +E ++    +P   
Sbjct: 164 VAVIHKDAEMVRLLRD--AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP--- 218

Query: 306 ELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                 G   L  A++  +    R L  +   A     E   +  +P    + 
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHG--AP--EPEDGGDKLSPCS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  114 bits (287), Expect = 3e-29
 Identities = 42/235 (17%), Positives = 71/235 (30%), Gaps = 38/235 (16%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           V      G T LHLA +        VL++           P    + +    +    + +
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQP------RPSHPRDASDTYLTQSQDCTPDTS 124

Query: 126 --TALHEAVSQGNVDVVKILTREDPG-YPYSANNYGKTPLYMAAEYENRSDMLRGLLENR 182
              A  ++      +       ED      + N  G TPL++A  +++            
Sbjct: 125 HAPAAVDSQPNPENEEEPRD--EDWRLQLEAENYDGHTPLHVAVIHKDA----------- 171

Query: 183 TSASFDMVLALLENSTSVSHEGPN-GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQ 241
                +MV  L +    ++   P  G+T LH A     A      +LL K          
Sbjct: 172 -----EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ-AASVL--ELLLKAGADPTARMY 223

Query: 242 YGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVE 295
            G TP+  A    N     LL      A       D+  +    +    D+   +
Sbjct: 224 GGRTPLGSALLRPNPILARLLRA--HGAPEPEDGGDKL-SPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.1 bits (227), Expect = 6e-21
 Identities = 32/250 (12%), Positives = 69/250 (27%), Gaps = 66/250 (26%)

Query: 23  DVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82
                LL  +  +     +   ++ ++ +                        P  + ++
Sbjct: 92  TCACVLLQPRPSHPRDASDTYLTQSQDCTPD------------------TSHAPAAVDSQ 133

Query: 83  FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKI 142
                                +            +   N + +T LH AV   + ++V++
Sbjct: 134 PNPENEEEPR-----DEDWRLQ------------LEAENYDGHTPLHVAVIHKDAEMVRL 176

Query: 143 LTREDPGYPYSAN------NYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN 196
           L          A+        G+TPL++A E +                   ++  LL+ 
Sbjct: 177 LRD------AGADLNKPEPTCGRTPLHLAVEAQAA----------------SVLELLLKA 214

Query: 197 STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNY 256
               +     G+T L +A +R      A  +LL        E      +P   +    + 
Sbjct: 215 GADPTARMYGGRTPLGSALLRPN-PILA--RLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271

Query: 257 RTVNLLLETD 266
              +   E D
Sbjct: 272 DNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 21/136 (15%)

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLET--DQSASNIADKDRKMTALHLAAGKGDARTVE 295
              + G T +H A  + +   ++ LL         ++ +   + TALHLAA  G+A TVE
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVE 62

Query: 296 RIIS-G---NPKCYELVDNRGCNFLHYAMVSFHV---------GQLRNLLENNPLARSLI 342
           ++ + G           +  G   LH A                       ++       
Sbjct: 63  KLYAAGAGVLVA-----ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 343 DEGDAEGNTPLHVLAA 358
           D      + P  V + 
Sbjct: 118 DCTPDTSHAPAAVDSQ 133

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  140 bits (356), Expect = 1e-38
 Identities = 79/372 (21%), Positives = 129/372 (34%), Gaps = 107/372 (28%)

Query: 8   AASAGNSEPFKDMERDVIERLLTAKA--------KNTILHINIISSERENVSTKFVEEIL 59
           AA +GN E        ++  L             K+T LH+   ++    V       I+
Sbjct: 31  AARSGNEE-------KLMALLTPLNVNCHASDGRKSTPLHL---AAGYNRV------RIV 74

Query: 60  EKCPALLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEP 112
           +    LLLQ    V+AK   G  PLH A  +GH+E+  +L++              G   
Sbjct: 75  Q----LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-------------GAC- 116

Query: 113 FRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYEN 170
               +  ++  + T LHEA S+  V+V  +L     DP      N +GK+ + MA     
Sbjct: 117 ----VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP---TLVNCHGKSAVDMAPTP-E 168

Query: 171 RSDMLRGLLENRT------SASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTA 224
             + L    +  +       A    V   L        +  + +TALH A          
Sbjct: 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ 228

Query: 225 LPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALH 283
           + +LL +K   + E ++   TP+H AA   +   + +L +    A  N  D   + TALH
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK--HGAKMNALDSLGQ-TALH 285

Query: 284 LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLID 343
            AA  G  +T   ++S            G +                             
Sbjct: 286 RAALAGHLQTCRLLLS-----------YGSD---------------------------PS 307

Query: 344 EGDAEGNTPLHV 355
               +G T   +
Sbjct: 308 IISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  115 bits (291), Expect = 2e-29
 Identities = 51/306 (16%), Positives = 94/306 (30%), Gaps = 73/306 (23%)

Query: 64  ALLL-----QVNAKGD----TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           AL L     +    G+      L  A      +++ +L                 V    
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-------------NVN--- 50

Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRS 172
                 +  K+T LH A     V +V++L +   D     + +  G  PL+ A  Y +  
Sbjct: 51  --CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH---AKDKGGLVPLHNACSYGH-- 103

Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK 232
                         +++   LL++   V+       T LH AA ++  V+     LL   
Sbjct: 104 --------------YEVTELLLKHGACVNAMDLWQFTPLHEAASKNR-VEVC--SLLLSH 146

Query: 233 KNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR 292
                  + +G + +  A        +    +               + L  A     A+
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFK-------------GHSLLQAAREADLAK 193

Query: 293 TVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQL---RNLLENNPLARSLIDEGDAEG 349
             + +        +         LH A+ S H  +      LL       + ++E + + 
Sbjct: 194 VKKTLALEIINFKQ--PQSHETALHCAVASLHPKRKQVAELLLRKG----ANVNEKNKDF 247

Query: 350 NTPLHV 355
            TPLHV
Sbjct: 248 MTPLHV 253

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  103 bits (260), Expect = 5e-25
 Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 63/243 (25%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
           LLL            G + + +A      E +                            
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF------------------------ 177

Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
                 K  +L +A  + ++  VK     +    +      +T L+ A            
Sbjct: 178 ------KGHSLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVA---------- 220

Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIK 237
              +       +   LL    +V+ +  +  T LH AA R+   D    ++L K    + 
Sbjct: 221 ---SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH-NDVM--EVLHKHGAKMN 274

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVER 296
             D  G T +H AA  G+ +T  LLL     +  +I       TA  +         V++
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLS--YGSDPSIISLQGF-TAAQMG-----NEAVQQ 326

Query: 297 IIS 299
           I+S
Sbjct: 327 ILS 329

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 92.2 bits (230), Expect = 6e-21
 Identities = 50/254 (19%), Positives = 76/254 (29%), Gaps = 59/254 (23%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
            +AL  A       +                 Y K  L  AA   N   +          
Sbjct: 5   KSALDLADPSAKAVL--------------TGEYKKDELLEAARSGNEEKL---------- 40

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW 244
                +  L   + +         T LH AA  +  V     +LL +    +   D+ G 
Sbjct: 41  -----MALLTPLNVNCHASDGRKSTPLHLAAGYN-RVRIV--QLLLQHGADVHAKDKGGL 92

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GN 301
            P+H A  YG+Y    LLL+    A  N  D  +  T LH AA K        ++S   +
Sbjct: 93  VPLHNACSYGHYEVTELLLK--HGACVNAMDLWQF-TPLHEAASKNRVEVCSLLLSHGAD 149

Query: 302 PKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPL-----------ARSLIDEG----- 345
           P    LV+  G + +  A       +L    + + L            +  +        
Sbjct: 150 P---TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206

Query: 346 -DAEGNTPLHVLAA 358
                 T LH  A 
Sbjct: 207 QPQSHETALH-CAV 219

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.6 bits (200), Expect = 5e-17
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 58/236 (24%)

Query: 23  DVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82
           + +         +++L      +   ++    V++ L        Q     +T LH A  
Sbjct: 171 ERLTYEF---KGHSLLQA----AREADL--AKVKKTLALEIINFKQPQ-SHETALHCAVA 220

Query: 83  FGHF---EIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDV 139
             H    ++  +L+ +             G       +   N +  T LH A  + + DV
Sbjct: 221 SLHPKRKQVAELLLRK-------------GAN-----VNEKNKDFMTPLHVAAERAHNDV 262

Query: 140 VKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS 199
           +++L +       + ++ G+T L+ AA   +                      LL   + 
Sbjct: 263 MEVLHKHG-AKMNALDSLGQTALHRAALAGHL----------------QTCRLLLSYGSD 305

Query: 200 VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGN 255
            S     G TA           +    ++L +    ++ +D      +  A+  G+
Sbjct: 306 PSIISLQGFTAAQMGN------EAVQ-QILSESTP-MRTSDVDY--RLLEASKAGD 351

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  131 bits (331), Expect = 6e-35
 Identities = 45/278 (16%), Positives = 86/278 (30%), Gaps = 54/278 (19%)

Query: 23  DVIERLLTAKAKN--TILHINIISSERENVSTKFVEEILEKCPALLLQ----VNAK---G 73
           +V E     K     T LH             + ++        +L+Q      AK    
Sbjct: 125 EVNEIGSHVKHCKGQTALHW---CVGLGPEYLEMIK--------ILVQLGASPTAKDKAD 173

Query: 74  DTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVS 133
           +TPL  A +F + E + ++++                      +   N + N+ LH A+ 
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLR-------------LDYANKQGNSHLHWAIL 220

Query: 134 QGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
               DV               +     N    PLY++        + + LL+   +  F 
Sbjct: 221 INWEDVAMRFVE------MGIDVNMEDNEHTVPLYLSVRA-AMVLLTKELLQK--TDVFL 271

Query: 189 MVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIH 248
           +      N T+V  +       + AAA  S   +    +LL++K + +  +   G     
Sbjct: 272 IQACPYHNGTTVLPDRVVWLDFVPAAADPSK-QEVL--QLLQEKLDEVVRSLNTGAGGAV 328

Query: 249 YAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLA 285
                       + L    SA      + R   +  ++
Sbjct: 329 KRKKKAAPAVKRMKLA--PSAPVRTRSRSRA-RSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  130 bits (330), Expect = 1e-34
 Identities = 55/303 (18%), Positives = 95/303 (31%), Gaps = 76/303 (25%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
                      +H+AA+ G  + VR LIE              GV        + N    
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIET-------------GVS-----PTIQNRFGC 54

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSAN---NYGKTPLYMAAEYENRSDMLRGLLENR 182
           TALH A   G VD  K L                +G+ P+++A                 
Sbjct: 55  TALHLACKFGCVDTAKYLASVG------EVHSLWHGQKPIHLAVMANKT----------- 97

Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQY 242
                D+V+AL+E +         G+                     E  +         
Sbjct: 98  -----DLVVALVEGAKE------RGQMPESLLNECDE---------REVNEIGSHVKHCK 137

Query: 243 GWTPIHYAAYYGNYR--TVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
           G T +H+    G      + +L++    AS    DK  + T L  A    +   ++ ++ 
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQ--LGASPTAKDKADE-TPLMRAMEFRNREALDLMMD 194

Query: 300 GNPKCY----ELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
             P       +  + +G + LH+A++          +E        ++  D E   PL+ 
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG--ID--VNMEDNEHTVPLY- 249

Query: 356 LAA 358
           L+ 
Sbjct: 250 LSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  125 bits (317), Expect = 7e-33
 Identities = 49/319 (15%), Positives = 89/319 (27%), Gaps = 83/319 (26%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
            L++       +   G T LHLA KFG  +  + L                G        
Sbjct: 38  RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-------------GEVH----- 79

Query: 118 RMVNNEKN--TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDML 175
               +  +    +H AV     D+V  L          A   G+ P  +  E + R    
Sbjct: 80  ----SLWHGQKPIHLAVMANKTDLVVALVE-------GAKERGQMPESLLNECDER---- 124

Query: 176 RGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMR-SFAVDTALPKLLEKKKN 234
                       ++                 G+TALH         ++    K+L +   
Sbjct: 125 ------------EVNEIGSHVKHC------KGQTALHWCVGLGPEYLEMI--KILVQLGA 164

Query: 235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK----MTALHLAAGKGD 290
                D+   TP+  A  + N   ++L+++T  S  +    D       + LH A     
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPS-KSSLRLDYANKQGNSHLHWAILINW 223

Query: 291 ARTVERIIS--GNPKCYELVDNRGCNFLHYA-------MVSFHVGQLRNLLENNPLAR-- 339
                R +    +     + DN     L+ +       +    + +    L         
Sbjct: 224 EDVAMRFVEMGIDV---NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG 280

Query: 340 SLIDEGDAEGNTPLHVLAA 358
           + +          +   AA
Sbjct: 281 TTVLPDRVVWLDFVP-AAA 298

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.9 bits (185), Expect = 5e-15
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 38/174 (21%)

Query: 227 KLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLA 285
            + +  K    ++D      IH AA  G    V  L+E     S  I ++    TALHLA
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRF-GCTALHLA 60

Query: 286 AGKGDARTVERIISG--NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLID 343
              G   T + + S              G   +H A+++              L  +L++
Sbjct: 61  CKFGCVDTAKYLASVGEVHS-----LWHGQKPIHLAVMANKTD----------LVVALVE 105

Query: 344 EGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTEL 397
                G  P  +L                + +   VN+    V+H    G T L
Sbjct: 106 GAKERGQMPESLLN---------------ECDEREVNEIGSHVKH--CKGQTAL 142

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  127 bits (321), Expect = 1e-34
 Identities = 57/237 (24%), Positives = 89/237 (37%), Gaps = 43/237 (18%)

Query: 55  VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE 111
           V+E+L   P+    +  K   G  PLH +  F   EI   L+ + +     D   +SG  
Sbjct: 18  VQELLHSKPS---LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG-- 72

Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPG-YPYSANNYGKTPLYMAAEYEN 170
                         T  H A S GN++VVK L             N G T L++A   + 
Sbjct: 73  -------------WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK- 118

Query: 171 RSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL- 229
                           F++   L+EN  SV  +    +  LH AA     +     +LL 
Sbjct: 119 ---------------WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS-LKLI--ELLC 160

Query: 230 EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA 286
              K+ +   D+ GWTP+ +A   G+     LL+E   +  ++ D      A  +A 
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  124 bits (314), Expect = 9e-34
 Identities = 47/254 (18%), Positives = 90/254 (35%), Gaps = 47/254 (18%)

Query: 73  GDTPLHLAAKFGHF-EIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN----TA 127
            + PLH A     F ++  +L  +                           +K+      
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSK-------------PSLL---------LQKDQDGRIP 39

Query: 128 LHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           LH +VS    ++   L  +  +       ++ G TP ++A       ++++ L +     
Sbjct: 40  LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKP 98

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
                         ++     G T LH A  + +  + +  + L +    ++  D++   
Sbjct: 99  -------------DLNKITNQGVTCLHLAVGKKW-FEVS--QFLIENGASVRIKDKFNQI 142

Query: 246 PIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCY 305
           P+H AA  G+ + + LL    +SA N  DK    T L  A  +G       ++      Y
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAAVLLVEKYGAEY 201

Query: 306 ELVDNRGCNFLHYA 319
           +LVDN+G      A
Sbjct: 202 DLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 39/132 (29%)

Query: 23  DVIERLLT------AKAKN--TILHINIISSERENVSTKFVEEILEKCPALLLQVNAK-- 72
           +V + L+        K K     LH           S K +E +     +    VN +  
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAA-----SVGSLKLIELLCGLGKS---AVNWQDK 172

Query: 73  -GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
            G TPL  A   GH +   +L+E+             G E       +V+N+   A   A
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKY------------GAE-----YDLVDNKGAKAEDVA 215

Query: 132 VSQGNVDVVKIL 143
           +++    V K  
Sbjct: 216 LNE---QVKKFF 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (319), Expect = 2e-34
 Identities = 53/262 (20%), Positives = 92/262 (35%), Gaps = 61/262 (23%)

Query: 68  QVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
            +          +  A ++G +E  R L+E              G +     +R  + E 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEA-------------GYD-----VRQPDKEN 42

Query: 125 NTALHEAVSQGNVDVVKILT-------REDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
            T LH A     +D+VK          +          +   TPL+ A        M+  
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLG-------GDLNSTPLHWATRQ-GHLSMVVQ 94

Query: 178 LLEN-----------RTS---ASF----DMVLALLENSTSVSHEGPNGKTALHAAAMRSF 219
           L++             +    A+      +V  L+     V     NG T L  AA R+ 
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154

Query: 220 AVDTALPKLLEKKKNLIKETDQY-GWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDR 277
           +VD    +LL      +   D+Y   T +H+A   GN   ++LLLE    A+ +  +   
Sbjct: 155 SVDPT--RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE--AGANVDAQNIKG 210

Query: 278 KMTALHLAAGKGDARTVERIIS 299
           + +AL LA  + +   +  +  
Sbjct: 211 E-SALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
                +  A       +    + L +    +++ D+   T +H+AA       V   +  
Sbjct: 8   YSTWDIVKATQYGI-YERC--RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS- 63

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GNPKCYELVDNRGCNFLHYAMVS 322
            + A  +    D   T LH A  +G    V +++    +P    L+D  GC+ +H A   
Sbjct: 64  -KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP---SLIDGEGCSCIHLAAQF 119

Query: 323 FHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHVLAAVR 360
            H   +  L+    +      +D  D  G TPL   AA R
Sbjct: 120 GHTSIVAYLIAKGQD------VDMMDQNGMTPLM-WAAYR 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 71.3 bits (176), Expect = 2e-14
 Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 236 IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTV 294
           +   D Y    I  A  YG Y     L+E          DK+  +T LH AA       V
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKE-NVTLLHWAAINNRIDLV 58

Query: 295 ERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLH 354
           +  IS      +L  +     LH+A    H+  +  L++    A       D EG + +H
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG--AD--PSLIDGEGCSCIH 114

Query: 355 VLAA 358
            LAA
Sbjct: 115 -LAA 117

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  126 bits (318), Expect = 4e-34
 Identities = 63/272 (23%), Positives = 103/272 (37%), Gaps = 41/272 (15%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
                  GDTPLH+A   G+   V  L+             + G E     + + NN + 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLF---------QQGGRE-----LDIYNNLRQ 47

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           T LH AV      VV++L       P + + +G+T  ++A E+      LR LL++    
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPG 105

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
           + D           +     +G TALH A       +T    LLE+  ++     + G +
Sbjct: 106 TLD-----------LEARNYDGLTALHVAVNTEC-QETVQ-LLLERGADIDAVDIKSGRS 152

Query: 246 PIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GNP 302
           P+ +A    +   V LLL+    A+ N        +ALH A+G+G    V  ++    + 
Sbjct: 153 PLIHAVENNSLSMVQLLLQ--HGANVNAQMYSGS-SALHSASGRGLLPLVRTLVRSGADS 209

Query: 303 KCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN 334
               L +      L  A     +  LR     
Sbjct: 210 ---SLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 79.4 bits (197), Expect = 3e-17
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS---NIADKDRKMTALHLAAGKGDA 291
           +    D+ G TP+H A   GN   V+ L+   Q      +I +  R+ T LHLA      
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLP 59

Query: 292 RTVERIIS--GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEG 349
             V  +++   +P     +D  G    H A        LR LL++       ++  + +G
Sbjct: 60  SVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 350 NTPLHV 355
            T LHV
Sbjct: 117 LTALHV 122

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  126 bits (319), Expect = 7e-34
 Identities = 52/251 (20%), Positives = 80/251 (31%), Gaps = 61/251 (24%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
              +   G TP  LAA  G  +++++ + +             G +     +   +    
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSK-------------GAD-----VNECDFYGF 106

Query: 126 TALHEAVSQGNVDVVKIL---------TREDPGYPYSANNYGKTPLYMAAEYENRSDMLR 176
           TA  EA   G V  +K L          R+           G T L  AAE     ++L+
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLK 165

Query: 177 GLLENRTSASFDMVLALLENSTSVSHEGPN-------GKTALHAAAMR-SFAVDTALPKL 228
            LL                        G +       G+ AL  A +    +   A+  L
Sbjct: 166 ILL---------------------DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 229 LEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGK 288
           L      +    + G TP+  A    +   V  LLE +    N  D D K TAL LA   
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAVEL 263

Query: 289 GDARTVERIIS 299
              +  E +  
Sbjct: 264 KLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (314), Expect = 4e-33
 Identities = 67/309 (21%), Positives = 105/309 (33%), Gaps = 69/309 (22%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIER-AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
             + +  L  A +    ++V+ L+E  A +  +                        T L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE------------------EEGGWTPL 43

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
           H AV     D+V++L R     P      G TP  +AA   +                  
Sbjct: 44  HNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFLLAAIAGSV----------------K 86

Query: 189 MVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL----------EKKKNLIKE 238
           ++   L     V+     G TA   AA+    V     K L           K K   + 
Sbjct: 87  LLKLFLSKGADVNECDFYGFTAFMEAAVYGK-VKAL--KFLYKRGANVNLRRKTKEDQER 143

Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARTVERI 297
             + G T +  AA  G+   + +LL  D+  +++   D     AL  A    D   VE I
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

Query: 298 ----IS-G---NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEG 349
               +  G   N +       RG   L  A+   H+G ++ LLE        I++ D++G
Sbjct: 202 THLLLDHGADVNVR-----GERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDG 253

Query: 350 NTPLHVLAA 358
            T L  LA 
Sbjct: 254 KTALL-LAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.9 bits (219), Expect = 7e-20
 Identities = 48/219 (21%), Positives = 72/219 (32%), Gaps = 43/219 (19%)

Query: 154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPN-GKTALH 212
           A       L  A + E+                 D+V  LLE   +V+ +    G T LH
Sbjct: 1   AAVEDNHLLIKAVQNEDV----------------DLVQQLLEGGANVNFQEEEGGWTPLH 44

Query: 213 AAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-N 271
            A   S   D    +LL +         + G TP   AA  G+ + + L L   + A  N
Sbjct: 45  NAVQMSR-EDIV--ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS--KGADVN 99

Query: 272 IADKDRKMTALHLAAGKGDARTVERIIS---------GNPKCYELVDNRGCNFLHYAMVS 322
             D     TA   AA  G  + ++ +              +  E +   G   L  A   
Sbjct: 100 ECDFY-GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 323 FHVGQLRNLLEN---NPLARSLIDEGDAEGNTPLHVLAA 358
            HV  L+ LL+    +      ++  D  G   L   A 
Sbjct: 159 GHVEVLKILLDEMGAD------VNACDNMGRNALI-HAL 190

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 23/99 (23%)

Query: 8   AASAGNSEPFKDMERDVIERLLTAKAK--------NTILHINIISSERENVSTKFVEEIL 59
           A  + +    +     +   LL   A          T L +   + E++++    V+ +L
Sbjct: 189 ALLSSDDSDVEA----ITHLLLDHGADVNVRGERGKTPLIL---AVEKKHLGL--VQRLL 239

Query: 60  EKCPALLLQVNAK---GDTPLHLAAKFGHFEIVRVLIER 95
           E+      ++N     G T L LA +    +I  +L +R
Sbjct: 240 EQEHI---EINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  124 bits (315), Expect = 9e-34
 Identities = 52/237 (21%), Positives = 90/237 (37%), Gaps = 44/237 (18%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           ++       TPL  AA+  H E V+ LI+              G       +   + E +
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAVKYLIKA-------------GAL-----VDPKDAEGS 78

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           T LH A  +G+ +VV+ L           ++ G TP+  A EY++               
Sbjct: 79  TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV-------------- 124

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
             D+V  LL   + ++         LH AA     VD A  ++L   K  +   + +G +
Sbjct: 125 --DLVKLLLSKGSDINIRDNEENICLHWAAFSGC-VDIA--EILLAAKCDLHAVNIHGDS 179

Query: 246 PIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGN 301
           P+H AA    Y  V L L   + +   + +K+ + T L  A+      +  ++    
Sbjct: 180 PLHIAARENRYDCVVLFLS--RDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  121 bits (306), Expect = 2e-32
 Identities = 54/257 (21%), Positives = 92/257 (35%), Gaps = 49/257 (19%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
              +     +PLH AA+ GH +I  +L++              G       I   + ++ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-------------GAN-----IDTCSEDQR 45

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           T L EA    +++ VK L +         +  G T L++AA+     ++++ LL N    
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAG-ALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSN---- 99

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
                         V+ +   G T +  A      VD    KLL  K + I   D     
Sbjct: 100 ----------GQMDVNCQDDGGWTPMIWATEYKH-VDLV--KLLLSKGSDINIRDNEENI 146

Query: 246 PIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GNP 302
            +H+AA+ G      +LL        +  +     + LH+AA +     V   +S   + 
Sbjct: 147 CLHWAAFSGCVDIAEILLA--AKCDLHAVNIHGD-SPLHIAARENRYDCVVLFLSRDSDV 203

Query: 303 KCYELVDNRGCNFLHYA 319
               L +  G   L  A
Sbjct: 204 ---TLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 94.4 bits (236), Expect = 2e-22
 Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 30/206 (14%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA 214
           +   ++PL+ AAE  +                 D+   L++   ++     + +T L  A
Sbjct: 8   HQNKRSPLHAAAEAGH----------------VDICHMLVQAGANIDTCSEDQRTPLMEA 51

Query: 215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD 274
           A  +  ++    K L K   L+   D  G T +H AA  G+Y  V  LL   Q   N  D
Sbjct: 52  AENNH-LEAV--KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108

Query: 275 KDRKMTALHLAAGKGDARTVERIIS--GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLL 332
                T +  A        V+ ++S   +     + DN     LH+A  S  V     LL
Sbjct: 109 DGGW-TPMIWATEYKHVDLVKLLLSKGSDI---NIRDNEENICLHWAAFSGCVDIAEILL 164

Query: 333 ENNPLARSLIDEGDAEGNTPLHVLAA 358
                    +   +  G++PLH +AA
Sbjct: 165 AAK----CDLHAVNIHGDSPLH-IAA 185

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.5 bits (174), Expect = 4e-14
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 236 IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTV 294
            K   Q   +P+H AA  G+    ++L++    A+ +   +D + T L  AA       V
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSED-QRTPLMEAAENNHLEAV 60

Query: 295 ERIISG----NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN 350
           + +I      +PK     D  G   LH A    H   ++ LL N    +  ++  D  G 
Sbjct: 61  KYLIKAGALVDPK-----DAEGSTCLHLAAKKGHYEVVQYLLSNG---QMDVNCQDDGGW 112

Query: 351 TPLHVLAA 358
           TP+   A 
Sbjct: 113 TPMI-WAT 119

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  127 bits (321), Expect = 2e-33
 Identities = 47/297 (15%), Positives = 97/297 (32%), Gaps = 47/297 (15%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
              P       G+  +        ++    +                   E    LH   
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPE------------------PESPIKLHTE- 101

Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA 192
           + G+  + + +TRE          + +T L+  A   + ++    L+ +           
Sbjct: 102 AAGSYAITEPITRE--SVNIIDPRHNRTVLHWIASN-SSAEKSEDLIVH-------EAKE 151

Query: 193 LLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAY 252
            +     V+    +  T L  A +            L K        ++   + +H AA 
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARR-RRLV--AYLMKAGADPTIYNKSERSALHQAAA 208

Query: 253 YGNYRTVNLLLETDQSASNIADKDRK-MTALHLAA---GKGDARTVERIIS-------GN 301
             ++  +  +L + +   +I + DR  MTAL + A   G+    + + ++          
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268

Query: 302 PKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
               +    +G   LHYA    ++  ++ L+       S  D+ D +G TP+  LAA
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG---SNKDKQDEDGKTPIM-LAA 321

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  122 bits (309), Expect = 1e-31
 Identities = 47/352 (13%), Positives = 96/352 (27%), Gaps = 72/352 (20%)

Query: 25  IERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG 84
            +R                +          + +       +  +   +    LH  A  G
Sbjct: 52  RQRNELQHYSLYPNPQGYGNGNDF------LGDFNHTNLQIPTEPEPESPIKLHTEAA-G 104

Query: 85  HFEIVRVLIER-AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKIL 143
            + I   +      +                           T LH   S  + +  + L
Sbjct: 105 SYAITEPITRESVNIID--------------------PRHNRTVLHWIASNSSAEKSEDL 144

Query: 144 TREDPGYPYSA-------NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN 196
              +     +A       +    TPL +A                       +V  L++ 
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVLA----------------RRRRLVAYLMKA 188

Query: 197 STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL---IKETDQYGWTPIHYAAYY 253
               +    + ++ALH AA             +     L   I+E D+ G T +   A+ 
Sbjct: 189 GADPTIYNKSERSALHQAAANR-DFGMM--VYMLNSTKLKGDIEELDRNGMTALMIVAHN 245

Query: 254 GNY---RTVNLLLE-------TDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPK 303
                  +  LL+E          +  +      + TALH AA   +   V+ ++     
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR-TALHYAAQVSNMPIVKYLVGEKGS 304

Query: 304 CYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
             +  D  G   +  A     +  +  L++      + ++  DA  +T   +
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (299), Expect = 2e-30
 Identities = 66/316 (20%), Positives = 105/316 (33%), Gaps = 64/316 (20%)

Query: 8   AASAGNSEPFKDMERDVIERLLTAKAK-------NTILHINIISSERENVSTKFVEEILE 60
             +AG+          + E +              T+LH     +   +      E+++ 
Sbjct: 100 TEAAGSYA--------ITEPITRESVNIIDPRHNRTVLHW---IASNSSAEK--SEDLIV 146

Query: 61  KCPALLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF 113
                 +     VNA     +TPL LA       +V  L++              G +  
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-------------GAD-- 191

Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPG--YPYSANNYGKTPLYMAAEYENR 171
                + N  + +ALH+A +  +  ++  +             +  G T L + A  E R
Sbjct: 192 ---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248

Query: 172 --SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL 229
                 + L+E    A  D   A  ++S         G+TALH AA  S  +     K L
Sbjct: 249 DQVASAKLLVEKG--AKVDYDGAARKDSEKY-----KGRTALHYAAQVSN-MPIV--KYL 298

Query: 230 EKKKNL-IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAG 287
             +K     + D+ G TPI  AA  G    V  L+   Q AS    D     TA  LA  
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI--QQGASVEAVDATDH-TARQLAQA 355

Query: 288 KGDARTVERIISGNPK 303
                 V+      P+
Sbjct: 356 NNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  104 bits (262), Expect = 3e-25
 Identities = 41/248 (16%), Positives = 71/248 (28%), Gaps = 48/248 (19%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
                 +L EA   G +   +              +Y   P        N          
Sbjct: 34  ITSSQHSLLEASYDGYIKRQRNE----------LQHYSLYPNPQGYGNGND--------- 74

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD 240
                   +      N    +   P     LH  A  S+A+      +  +  N+I    
Sbjct: 75  -------FLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAI---TEPITRESVNIID--P 122

Query: 241 QYGWTPIHYAAYYGNYRTVNLLLETDQSA--SNIADKDRK----MTALHLAAGKGDARTV 294
           ++  T +H+ A   +      L+  +     +  AD +       T L LA      R V
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

Query: 295 ERIISG----NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN 350
             ++              +    + LH A  +   G +  +L +  L    I+E D  G 
Sbjct: 183 AYLMKAGADPTIY-----NKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGM 236

Query: 351 TPLHVLAA 358
           T L  + A
Sbjct: 237 TALM-IVA 243

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  122 bits (309), Expect = 6e-33
 Identities = 57/238 (23%), Positives = 88/238 (36%), Gaps = 52/238 (21%)

Query: 70  NAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN- 125
           N     G+T LHLAA++   +  + L+E                +          N ++ 
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEA-------------SADA---------NIQDN 56

Query: 126 ---TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR 182
              T LH AVS     V +IL R       +  + G TPL +AA                
Sbjct: 57  MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-------------- 102

Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQY 242
             A   M+  L+ +   V+     GK+ALH AA  +  VD A   +L K        +  
Sbjct: 103 --AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN-VDAA--VVLLKNGANKDMQNNR 157

Query: 243 GWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
             TP+  AA  G+Y T  +LL+    A+ +I D   +     +A  +     V  +  
Sbjct: 158 EETPLFLAAREGSYETAKVLLD--HFANRDITDHMDR-LPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 84.4 bits (210), Expect = 5e-19
 Identities = 44/226 (19%), Positives = 65/226 (28%), Gaps = 63/226 (27%)

Query: 135 GNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALL 194
               V+     +        +  G+T L++AA Y                   D    LL
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS----------------DAAKRLL 45

Query: 195 ENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL-EKKKNLIKETDQYGWTPIHYAAYY 253
           E S   + +   G+T LHAA     A      ++L   +   +      G TP+  AA  
Sbjct: 46  EASADANIQDNMGRTPLHAAVSAD-AQGVF--QILIRNRATDLDARMHDGTTPLILAARL 102

Query: 254 GNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRG 312
                +  L+     A  N  D   K +ALH AA   +      ++             G
Sbjct: 103 AVEGMLEDLIN--SHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLK-----------NG 148

Query: 313 CNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
            N                            D  +    TPL  LAA
Sbjct: 149 AN---------------------------KDMQNNREETPLF-LAA 166

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (313), Expect = 8e-33
 Identities = 58/251 (23%), Positives = 94/251 (37%), Gaps = 42/251 (16%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           +N     G T LH A    + ++V+ L+E              G       I   +NE  
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVEN-------------GAN-----INQPDNEGW 107

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR--- 182
             LH A S G +D+ + L  +   +  + N+ G TPL +A E E   ++L+  +  +   
Sbjct: 108 IPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEE-EAMEELLQNEVNRQGVD 165

Query: 183 ---------TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK 233
                         D    L     +      +G TALH AA + +  +    KLL + +
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY-TEVL--KLLIQAR 222

Query: 234 NLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDAR 292
             +   D  GWTP+H AA++G      +L+E          +K  + TA  +A       
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVGQ-TAFDVADEDILGY 279

Query: 293 TVERIISGNPK 303
             E     N  
Sbjct: 280 LEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  115 bits (290), Expect = 1e-29
 Identities = 63/312 (20%), Positives = 95/312 (30%), Gaps = 63/312 (20%)

Query: 29  LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD--TPLHLAAKFGHF 86
           +    +     +        ++      E          +   K D       A   G  
Sbjct: 3   MADAKQKRNEQLKRWIGSETDL------EPPVVKRK---KTKVKFDDGAVFLAACSSGDT 53

Query: 87  EIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRE 146
           E V  L+ER             G +     I   N +  TALH+A    NVD+VK L   
Sbjct: 54  EEVLRLLER-------------GAD-----INYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 147 --DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV---------LALLE 195
             +       +N G  PL+ AA      D+   L+     A    V         +A  E
Sbjct: 96  GANIN---QPDNEGWIPLHAAASC-GYLDIAEYLISQG--AHVGAVNSEGDTPLDIAEEE 149

Query: 196 NSTSV-----SHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA 250
               +     + +G + + A      R    D    + L           + G T +H A
Sbjct: 150 AMEELLQNEVNRQGVDIEAARKEEE-RIMLRDAR--QWLNSGHINDVRHAKSGGTALHVA 206

Query: 251 AYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GNPKCYEL 307
           A  G    + LL++       NI D D   T LH AA  G       ++    +    E 
Sbjct: 207 AAKGYTEVLKLLIQ--ARYDVNIKDYDGW-TPLHAAAHWGKEEACRILVENLCDM---EA 260

Query: 308 VDNRGCNFLHYA 319
           V+  G      A
Sbjct: 261 VNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  113 bits (285), Expect = 7e-29
 Identities = 63/319 (19%), Positives = 96/319 (30%), Gaps = 85/319 (26%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
           +AK      L    G    +   + + K                      V  +      
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRK-------------------KTKVKFDDGAVFL 45

Query: 130 EAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
            A S G+ + V  L     D      AN  G T L+ A   +N                 
Sbjct: 46  AACSSGDTEEVLRLLERGADIN---YANVDGLTALHQACIDDNV---------------- 86

Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPI 247
           DMV  L+EN  +++     G   LHAAA   + +D A  + L  +   +   +  G TP+
Sbjct: 87  DMVKFLVENGANINQPDNEGWIPLHAAASCGY-LDIA--EYLISQGAHVGAVNSEGDTPL 143

Query: 248 HYAAYYGNYRTVNLLLE--------TDQSA-------------SNIADKDRK----MTAL 282
             A        +   +           +               S   +  R      TAL
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203

Query: 283 HLAAGKGDARTVERIISG----NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NP 336
           H+AA KG    ++ +I      N K     D  G   LH A         R L+EN  + 
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDVNIK-----DYDGWTPLHAAAHWGKEEACRILVENLCD- 257

Query: 337 LARSLIDEGDAEGNTPLHV 355
                ++  +  G T   V
Sbjct: 258 -----MEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 99.5 bits (249), Expect = 7e-24
 Identities = 42/243 (17%), Positives = 72/243 (29%), Gaps = 37/243 (15%)

Query: 117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLR 176
           ++M + ++          G+   ++    +                  A    +      
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVK--RKKTKVKFDDGAVFLAACSSGDT----- 53

Query: 177 GLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLI 236
                      + VL LLE    +++   +G TALH A +    VD    K L +    I
Sbjct: 54  -----------EEVLRLLERGADINYANVDGLTALHQACIDDN-VDMV--KFLVENGANI 99

Query: 237 KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVE 295
            + D  GW P+H AA  G       L+   Q A     + +   T L +A  +     ++
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLIS--QGAHVGAVNSEGD-TPLDIAEEEAMEELLQ 156

Query: 296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
             ++      E         +      +      N                  G T LHV
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN-----------DVRHAKSGGTALHV 205

Query: 356 LAA 358
            AA
Sbjct: 206 -AA 207

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (309), Expect = 8e-33
 Identities = 64/284 (22%), Positives = 105/284 (36%), Gaps = 59/284 (20%)

Query: 31  AKAKN--TILHI--------NIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80
            +  +  T L I           +SE E  +   + + + +  +L  Q +  G+T LHLA
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 81  AKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN----TALHEAVSQGN 136
           A++   +  + L+E                +          N ++    T LH AVS   
Sbjct: 65  ARYSRSDAAKRLLEA-------------SADA---------NIQDNMGRTPLHAAVSADA 102

Query: 137 VDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN 196
             V +IL R       +  + G TPL +AA                  A   M+  L+ +
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARL----------------AVEGMLEDLINS 146

Query: 197 STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNY 256
              V+     GK+ALH AA  +  VD A   +L K        +    TP+  AA  G+Y
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNN-VDAA--VVLLKNGANKDMQNNREETPLFLAAREGSY 203

Query: 257 RTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
            T  +LL+    A+ +I D   +     +A  +     V  +  
Sbjct: 204 ETAKVLLD--HFANRDITDHMDR-LPRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  109 bits (274), Expect = 9e-28
 Identities = 55/281 (19%), Positives = 94/281 (33%), Gaps = 83/281 (29%)

Query: 69  VNAK---GDTPLHLAAKFG-------------HFEIVRVLIERAKLAQRGDEEPESGVEP 112
           VN +   G TPL +A+  G                ++   I +             G   
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-------------GAS- 48

Query: 113 FRQMIRMVNNEKN----TALHEAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLY 163
                  ++N+ +    TALH A      D  K L         SA+     N G+TPL+
Sbjct: 49  -------LHNQTDRTGETALHLAARYSRSDAAKRLLE------ASADANIQDNMGRTPLH 95

Query: 164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT 223
            A    +   + + L+ NR         A   ++        +G T L  AA  +     
Sbjct: 96  AAVSA-DAQGVFQILIRNR---------ATDLDARMH-----DGTTPLILAARLAV-EGM 139

Query: 224 ALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTAL 282
              + L      +   D  G + +H+AA   N     +LL+    A+ ++ +   + T L
Sbjct: 140 L--EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK--NGANKDMQNNREE-TPL 194

Query: 283 HLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLHYA 319
            LAA +G   T + ++      +       D+        A
Sbjct: 195 FLAAREGSYETAKVLLDHFANRDIT-----DHMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.5 bits (249), Expect = 3e-24
 Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 22/209 (10%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEG-PNGKTALHA 213
              G TPL +A+      +      E     +  ++   +    S+ ++    G+TALH 
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEED---APAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 214 AAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIA 273
           AA  S   D A  K L +        D  G TP+H A          +L+    +  +  
Sbjct: 64  AARYSR-SDAA--KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 274 DKDRKMTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLHYAMVSFHVGQLR 329
             D   T L LAA       +E +I+     N       D+ G + LH+A    +V    
Sbjct: 121 MHDGT-TPLILAARLAVEGMLEDLINSHADVNAV-----DDLGKSALHWAAAVNNVDAAV 174

Query: 330 NLLENNPLARSLIDEGDAEGNTPLHVLAA 358
            LL+N     +  D  +    TPL  LAA
Sbjct: 175 VLLKNG----ANKDMQNNREETPLF-LAA 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  121 bits (305), Expect = 7e-32
 Identities = 42/304 (13%), Positives = 79/304 (25%), Gaps = 73/304 (24%)

Query: 64  ALLLQ---VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
              L           G +  + A    +  +V  L+               G        
Sbjct: 16  KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA-------------GALK----- 57

Query: 118 RMVNNEKN--TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDML 175
               N       LH+A +  +  +VKIL           ++ G T LY A +  N     
Sbjct: 58  ----NLLENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGN----- 107

Query: 176 RGLLENRTSASFDMVLALLENSTSVSHEGPNG-KTALHAAAMRSFAVDTALPKLLEKKKN 234
                         V   ++ +  +   G  G KT+ + A M +  V          +  
Sbjct: 108 -----------MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND-VSIV--SYFLSEIP 153

Query: 235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDART 293
                     + IH     G+   + LLL  D   S N  +    +  + LA    D   
Sbjct: 154 -STFDLAILLSCIHITIKNGHVDMMILLL--DYMTSTNTNNSLLFIPDIKLAIDNKDIEM 210

Query: 294 VERIISGNPKCYELVDNRGCNF---LHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN 350
           ++ +                N        ++       + ++E +              +
Sbjct: 211 LQALFK-----------YDINIYSANLENVLLDDAEIAKMIIEKH--VE--YKSDSYTKD 255

Query: 351 TPLH 354
             + 
Sbjct: 256 LDIV 259

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  111 bits (279), Expect = 3e-28
 Identities = 43/255 (16%), Positives = 74/255 (29%), Gaps = 54/255 (21%)

Query: 69  VNAK-GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
            N    + PLH AA     +IV++L+               G++         +++ NTA
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLFS-------------GLD-----DSQFDDKGNTA 98

Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
           L+ AV  GN+  VK+  +++    +      KT  Y A    +                 
Sbjct: 99  LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV---------------- 142

Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTP- 246
            +V   L    S   +     + +H        VD     LL          +   + P 
Sbjct: 143 SIVSYFLSEIPST-FDLAILLSCIHITIKNGH-VDMM--ILLLDYMTSTNTNNSLLFIPD 198

Query: 247 IHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS--GNPKC 304
           I  A    +   +  L + D       +     +A        DA   + II      K 
Sbjct: 199 IKLAIDNKDIEMLQALFKYD------INIY---SANLENVLLDDAEIAKMIIEKHVEYKS 249

Query: 305 YELVDNRGCNFLHYA 319
                      +   
Sbjct: 250 ---DSYTKDLDIVKN 261

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 39/242 (16%), Positives = 71/242 (29%), Gaps = 70/242 (28%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN---NYGKTPLYMAAEYENRSDMLRG 177
           +   ++A + A++  NV +V  L          A       + PL+ AA  E+       
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAG------ALKNLLENEFPLHQAATLED------- 74

Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIK 237
                      +V  LL +    S     G TAL+ A   S  + T   KL  KK   + 
Sbjct: 75  ---------TKIVKILLFSGLDDSQFDDKGNTALYYAV-DSGNMQTV--KLFVKKNWRLM 122

Query: 238 ETDQYGW-TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVER 296
              + GW T  ++A    +   V+  L   +  S        ++ +H+    G    +  
Sbjct: 123 FYGKTGWKTSFYHAVMLNDVSIVSYFLS--EIPSTFDLAI-LLSCIHITIKNGHVDMMIL 179

Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL 356
           ++               +                            +  ++    P   L
Sbjct: 180 LLD-----------YMTS---------------------------TNTNNSLLFIPDIKL 201

Query: 357 AA 358
           A 
Sbjct: 202 AI 203

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.6 bits (187), Expect = 1e-15
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 17/171 (9%)

Query: 190 VLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHY 249
            L    +S        +G +A + A   +  V       L     L    +     P+H 
Sbjct: 14  QLKSFLSSKDTFKADVHGHSASYYAIADNN-VRLV--CTLLNAGALKNLLE--NEFPLHQ 68

Query: 250 AAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELV 308
           AA   + + V +LL        +  D     TAL+ A   G+ +TV+  +  N +     
Sbjct: 69  AATLEDTKIVKILL--FSGLDDSQFDDK-GNTALYYAVDSGNMQTVKLFVKKNWR-LMFY 124

Query: 309 DNRGCNF-LHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
              G     ++A++   V  +   L   P          A   + +H +  
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIP-----STFDLAILLSCIH-ITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 26/213 (12%), Positives = 51/213 (23%), Gaps = 63/213 (29%)

Query: 65  LLLQ----VNAK----GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQM 116
           L ++    +         T  + A       IV   +                       
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-------------------- 152

Query: 117 IRMVNNEKN----TALHEAVSQGNVDVVKILTREDPG-YPYSANNYGKTPLYMAAEYENR 171
               +        + +H  +  G+VD++ +L   D      + N+    P    A     
Sbjct: 153 ---PSTFDLAILLSCIHITIKNGHVDMMILLL--DYMTSTNTNNSLLFIPDIKLAIDNKD 207

Query: 172 SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEK 231
            +ML+ L +                         N  +A     +     + A  K++ +
Sbjct: 208 IEMLQALFKY----------------------DINIYSANLENVLLD-DAEIA--KMIIE 242

Query: 232 KKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
           K    K         I          + N  L 
Sbjct: 243 KHVEYKSDSYTKDLDIVKNNKLDEIISKNKELR 275

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 29/159 (18%)

Query: 207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETD 266
           G         +S  +     K     K+   + D +G +  +YA    N R V  LL   
Sbjct: 1   GMDLSRINTWKSKQL-----KSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLL--- 51

Query: 267 QSASNIADKDRK--MTALHLAAGKGDARTVERIISG----NPKCYELVDNRGCNFLHYAM 320
              +  A K+       LH AA   D + V+ ++      +       D++G   L+YA+
Sbjct: 52  ---NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQF-----DDKGNTALYYAV 103

Query: 321 VSFHVGQLRNLLENNPLARSLIDEGDAEG-NTPLHVLAA 358
            S ++  ++  ++ N      +      G  T  +  A 
Sbjct: 104 DSGNMQTVKLFVKKN----WRLMFYGKTGWKTSFY-HAV 137

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  118 bits (297), Expect = 2e-31
 Identities = 42/249 (16%), Positives = 79/249 (31%), Gaps = 49/249 (19%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G   +  A           L       + GD             I  + +  +T   +  
Sbjct: 12  GQVKVFRALYTFEPRTPDELYI-----EEGD-------------IIYITDMSDTNWWKGT 53

Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA 192
           S+G   ++         Y          PL+ AA+  N                   +  
Sbjct: 54  SKGRTGLIPSN------YVAEQAESIDNPLHEAAKRGNL----------------SWLRE 91

Query: 193 LLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN-LIKETDQYGWTPIHYAA 251
            L+N   V+     G TAL+ A       D    ++L  + N  + + ++ G T +H AA
Sbjct: 92  CLDNRVGVNGLDKAGSTALYWACHGGH-KDIV--EMLFTQPNIELNQQNKLGDTALHAAA 148

Query: 252 YYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDN 310
           + G    V LLL   + A  ++ + ++K  A  +A     A  +++    +     L + 
Sbjct: 149 WKGYADIVQLLLA--KGARTDLRNIEKK-LAFDMATNAACASLLKKKQGTDAVR-TLSNA 204

Query: 311 RGCNFLHYA 319
                   +
Sbjct: 205 EDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (251), Expect = 8e-25
 Identities = 33/228 (14%), Positives = 58/228 (25%), Gaps = 58/228 (25%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           +    DT        G   ++       +                           +  L
Sbjct: 41  ITDMSDTNWWKGTSKGRTGLIPSNYVAEQ-----------------------AESIDNPL 77

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
           HEA  +GN+  ++       G     +  G T LY A    +                 D
Sbjct: 78  HEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGH----------------KD 120

Query: 189 MVLALLENSTSVSHEGPN-------GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQ 241
           +V  L       +            G TALHAAA + +  D    +LL  K       + 
Sbjct: 121 IVEMLF------TQPNIELNQQNKLGDTALHAAAWKGY-ADIV--QLLLAKGARTDLRNI 171

Query: 242 YGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKG 289
                   A        +     TD +   +++ +        +  + 
Sbjct: 172 EKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAE-DYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 35/209 (16%), Positives = 56/209 (26%), Gaps = 33/209 (15%)

Query: 151 PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTA 210
           P      G+  ++ A                           L      + +      T 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEP----------------RTPDELYIEEGDIIYITDMSDTN 48

Query: 211 LHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS 270
                 +         +      N + E  +    P+H AA  GN   +   L+      
Sbjct: 49  WWKGTSKG--------RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD--NRVG 98

Query: 271 -NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLR 329
            N  DK    TAL+ A   G    VE + +         +  G   LH A    +   ++
Sbjct: 99  VNGLDKAGS-TALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ 157

Query: 330 NLLENNPLARSLIDEGDAEGNTPLHVLAA 358
            LL     AR   D  + E       +A 
Sbjct: 158 LLLAKG--AR--TDLRNIEKKLAFD-MAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 6/81 (7%), Positives = 17/81 (20%), Gaps = 25/81 (30%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
           LLL      + +         +A       +++                           
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-------------DAV-----R 199

Query: 118 RMVNNEKNTALHEAVSQGNVD 138
            + N E      ++  + +  
Sbjct: 200 TLSNAEDYLDDEDSDLEHHHH 220

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  118 bits (297), Expect = 3e-31
 Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 35/235 (14%)

Query: 68  QVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
           Q+   GD+ LHLA       +   +I +  +                  +   NN + T 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQ--VKGDLAF------------LNFQNNLQQTP 48

Query: 128 LHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           LH AV     ++ + L     DP      +  G TPL++A E       +  L ++ T+ 
Sbjct: 49  LHLAVITNQPEIAEALLGAGCDPE---LRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTP 104

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
               +L              NG T LH A++  + +      L+    ++  +    G T
Sbjct: 105 HLHSILKATNY---------NGHTCLHLASIHGY-LGIVE-LLVSLGADVNAQEPCNGRT 153

Query: 246 PIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
            +H A    N   V+LLL+    A  N        +   L  G+   R  +++  
Sbjct: 154 ALHLAVDLQNPDLVSLLLK--CGADVNRVTYQGY-SPYQLTWGRPSTRIQQQLGQ 205

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 93.8 bits (234), Expect = 3e-22
 Identities = 49/310 (15%), Positives = 84/310 (27%), Gaps = 112/310 (36%)

Query: 8   AASAGNSEPFKDMERDVIERLLT------AKAKN--TILHINIISSERENVSTKFVEEIL 59
           A         K +  +VI ++         +     T LH+   +            EI 
Sbjct: 15  AIIHEE----KALTMEVIRQVKGDLAFLNFQNNLQQTPLHL---AVITNQ------PEIA 61

Query: 60  EKCPALLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEP 112
           E     LL        +   G+TPLHLA + G    V VL +                 P
Sbjct: 62  E----ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS-------------CTTP 104

Query: 113 -FRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN------NYGKTPLYMA 165
               +++  N   +T LH A   G + +V++L          A+        G+T L++A
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG------ADVNAQEPCNGRTALHLA 158

Query: 166 AEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAL 225
            + +N                 D+V  LL+        G +                   
Sbjct: 159 VDLQNP----------------DLVSLLLKC-------GAD------------------- 176

Query: 226 PKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLA 285
                     +      G++P        + R    L +   +  N+             
Sbjct: 177 ----------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ--LTLENLQMLPESEDEESYD 224

Query: 286 AGKGDARTVE 295
                    E
Sbjct: 225 TESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.0 bits (188), Expect = 4e-16
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 237 KETDQYGWTPIHYAAYYGNYRTVNLLLET--DQSAS-NIADKDRKMTALHLAAGKGDART 293
           ++  + G + +H A  +        ++       A  N  +  ++ T LHLA        
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEI 60

Query: 294 VERIISG--NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEG 349
            E ++    +P   EL D RG   LH A     +  +  L ++   P   S++   +  G
Sbjct: 61  AEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 350 NTPLHVLAA 358
           +T LH LA+
Sbjct: 118 HTCLH-LAS 125

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  118 bits (298), Expect = 7e-31
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 47/225 (20%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           VN       +PLH A   GH   V++L++              G +     +  V  + +
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKILLKH-------------GAQ-----VNGVTADWH 126

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           T L  A   G+ D V +L +   G      +   +P++ AA   +               
Sbjct: 127 TPLFNACVSGSWDCVNLLLQH--GASVQPESDLASPIHEAARRGHV-------------- 170

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
             + V +L+    ++ H+  +  T L+ A            KLLE   ++     +   +
Sbjct: 171 --ECVNSLIAYGGNIDHKISHLGTPLYLACENQQ-RACVK-KLLESGADV--NQGKGQDS 224

Query: 246 PIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKG 289
           P+H      +     LL+  D  A     + + K   + L   + 
Sbjct: 225 PLHAVVRTASEELACLLM--DFGADTQAKNAEGK-RPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  117 bits (297), Expect = 1e-30
 Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 53/255 (20%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
                +P+H AA  GH   +R LI +             G       + ++  +  + LH
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQ-------------GWA-----VNIITADHVSPLH 97

Query: 130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDM 189
           EA   G++  VKIL +              TPL+ A           G        S+D 
Sbjct: 98  EACLGGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVS--------G--------SWDC 140

Query: 190 VLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHY 249
           V  LL++  SV  E  +  + +H AA R   V+      L      I     +  TP++ 
Sbjct: 141 VNLLLQHGASVQPES-DLASPIHEAARRGH-VECV--NSLIAYGGNIDHKISHLGTPLYL 196

Query: 250 AAYYGNYRTVNLLLETDQSASNIADKDRK---MTALHLAAGKGDARTVERIIS--GNPKC 304
           A        V  LL       + AD ++     + LH             ++    +   
Sbjct: 197 ACENQQRACVKKLL------ESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADT-- 248

Query: 305 YELVDNRGCNFLHYA 319
            +  +  G   +   
Sbjct: 249 -QAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (257), Expect = 4e-25
 Identities = 51/311 (16%), Positives = 99/311 (31%), Gaps = 79/311 (25%)

Query: 79  LAAKFGHFEIVRVLIER-AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNV 137
           + +   H      L+ R + +A    ++                 + +         G  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQG--------------GMDGSKPAGPRDFPGIR 46

Query: 138 DVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENS 197
            +   L  +             +P++ AA + +                   +  L+   
Sbjct: 47  LLSNPLMGDA--------VSDWSPMHEAAIHGH----------------QLSLRNLISQG 82

Query: 198 TSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYR 257
            +V+    +  + LH A +    +     K+L K    +        TP+  A   G++ 
Sbjct: 83  WAVNIITADHVSPLHEACLGGH-LSCV--KILLKHGAQVNGVTADWHTPLFNACVSGSWD 139

Query: 258 TVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS--GNPKCYELVDNRGCNF 315
            VNLLL+    A ++  +    + +H AA +G    V  +I+  GN    +   +     
Sbjct: 140 CVNLLLQ--HGA-SVQPESDLASPIHEAARRGHVECVNSLIAYGGNI---DHKISHLGTP 193

Query: 316 LHYAMVSFHVGQLRNLLENN-----------PL-----------ARSLIDEG------DA 347
           L+ A  +     ++ LLE+            PL           A  L+D G      +A
Sbjct: 194 LYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253

Query: 348 EGNTPLHVLAA 358
           EG  P+  L  
Sbjct: 254 EGKRPVE-LVP 263

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  101 bits (255), Expect = 7e-25
 Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 49/202 (24%)

Query: 68  QVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVN--N 122
           QVN       TPL  A   G ++ V +L++              G          V   +
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQH-------------GAS--------VQPES 155

Query: 123 EKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR 182
           +  + +HEA  +G+V+ V  L     G      ++  TPLY+A E +             
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQ------------ 202

Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQY 242
                  V  LLE+   V ++G    + LHA    +   + A   LL       +  +  
Sbjct: 203 ----RACVKKLLESGADV-NQGKGQDSPLHAVVRTAS-EELA--CLLMDFGADTQAKNAE 254

Query: 243 GWTPIHYAAYYGNYRTVNLLLE 264
           G  P+             L LE
Sbjct: 255 GKRPVELVPPESP--LAQLFLE 274

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  105 bits (265), Expect = 2e-27
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 23/176 (13%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
           + ++H+  +QG +D +K   R+        +  G TPL  A+ +        G +E    
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF--------GEIE---- 50

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW 244
                V  LLE            ++AL  A+   +  D     LL ++   I   D  G 
Sbjct: 51  ----TVRFLLEWGADPHILAKERESALSLASTGGY-TDIV--GLLLERDVDINIYDWNGG 103

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
           TP+ YA    + + V  LL   + A           T + LA   G  +  + I +
Sbjct: 104 TPLLYAVRGNHVKCVEALLA--RGADLTTEADSG-YTPMDLAVALGYRKVQQVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.8 bits (250), Expect = 3e-25
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 47/208 (22%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
               +H  A  G  + ++  + +      GD                 +    T L  A 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRK------GDNLVNKP-----------DERGFTPLIWAS 44

Query: 133 SQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV 190
           + G ++ V+ L     DP          ++ L +A+          G          D+V
Sbjct: 45  AFGEIETVRFLLEWGADPH---ILAKERESALSLASTG--------G--------YTDIV 85

Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA 250
             LLE    ++    NG T L  A   +  V     + L  +   +      G+TP+  A
Sbjct: 86  GLLLERDVDINIYDWNGGTPLLYAVRGNH-VKCV--EALLARGADLTTEADSGYTPMDLA 142

Query: 251 AYYGNYRTVNLLLETDQSASNIADKDRK 278
              G  +   ++       ++I    + 
Sbjct: 143 VALGYRKVQQVIE------NHILKLFQS 164

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 90.9 bits (227), Expect = 6e-22
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 38/192 (19%)

Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           ++E L K   L+ + + +G TPL  A+ FG  E VR L+E              G +   
Sbjct: 18  LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-------------GAD--- 61

Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDM 174
               ++  E+ +AL  A + G  D+V +L   D       +  G TPL  A    +    
Sbjct: 62  --PHILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNH---- 114

Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN 234
                          V ALL     ++ E  +G T +  A    +       +++E    
Sbjct: 115 ------------VKCVEALLARGADLTTEADSGYTPMDLAVALGY-RKVQ--QVIENHIL 159

Query: 235 LIKETDQYGWTP 246
            + +++     P
Sbjct: 160 KLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 81.7 bits (203), Expect = 1e-18
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 11/150 (7%)

Query: 207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETD 266
              ++H  A +   +D    + L K  NL+ + D+ G+TP+ +A+ +G   TV  LLE  
Sbjct: 2   DSLSIHQLAAQGE-LDQLK-EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-- 57

Query: 267 QSAS-NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHV 325
             A  +I  K+R  +AL LA+  G    V  ++  +     + D  G   L YA+   HV
Sbjct: 58  WGADPHILAKER-ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHV 115

Query: 326 GQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
             +  LL     A   +      G TP+ +
Sbjct: 116 KCVEALLARG--AD--LTTEADSGYTPMDL 141

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  106 bits (267), Expect = 6e-27
 Identities = 49/240 (20%), Positives = 78/240 (32%), Gaps = 37/240 (15%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
            ++PL LAAK    + +  L     L   G E            +        TALH A 
Sbjct: 3   WESPLLLAAKENDVQALSKL-----LKFEGCE------------VHQRGAMGETALHIAA 45

Query: 133 SQGNVDVVKILTRE----DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
              N++   +L             S    G+T L++A       +++R LL     AS  
Sbjct: 46  LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN-QNVNLVRALLARG--ASVS 102

Query: 189 MVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIH 248
                        +    G+  L  AA      +    +LL +    I+  D  G T +H
Sbjct: 103 ARATGSVFHYRPHNLIYYGEHPLSFAACVGS-EEIV--RLLIEHGADIRAQDSLGNTVLH 159

Query: 249 YAAYYGNYRTV----NLLLETD-----QSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
                 N        NLLL  D     +S   + +     T   LA  +G+    + ++ 
Sbjct: 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 83.8 bits (208), Expect = 8e-19
 Identities = 50/228 (21%), Positives = 74/228 (32%), Gaps = 50/228 (21%)

Query: 157 YGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAM 216
             ++PL +AA+  N    L  L              L      V   G  G+TALH AA+
Sbjct: 2   IWESPLLLAAKE-NDVQALSKL--------------LKFEGCEVHQRGAMGETALHIAAL 46

Query: 217 RSFAVDTALPKLL-----EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLL-------E 264
               ++ A   +L     E     +      G T +H A    N   V  LL        
Sbjct: 47  YD-NLEAA--MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103

Query: 265 TDQSASNIADKDRKM----TALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFL 316
               +         +      L  AA  G    V  +I  G     +     D+ G   L
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-----DSLGNTVL 158

Query: 317 HYAMVSFH---VGQLRNLL---ENNPLARSLIDEGDAEGNTPLHVLAA 358
           H  ++  +     Q+ NLL   +     +SL    + +G TP   LA 
Sbjct: 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK-LAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 34/214 (15%)

Query: 207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE-- 264
            ++ L  AA  +     +  KLL+ +   + +    G T +H AA Y N     +L+E  
Sbjct: 3   WESPLLLAAKENDVQALS--KLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 265 --TDQSASNIADKDRKMTALHLAAGKGDARTVERIIS------------GNPKCYELVDN 310
                        + + TALH+A    +   V  +++                    +  
Sbjct: 61  PELVFEPMTSELYEGQ-TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 311 RGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVM 368
            G + L +A        +R L+E+  +      I   D+ GNT LH+L     K F   M
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGAD------IRAQDSLGNTVLHILILQPNKTFACQM 173

Query: 369 NR---STQANYDAVNKQNVSVRHVFNYGYTELKV 399
                S        + + V      N G T  K+
Sbjct: 174 YNLLLSYDGGDHLKSLELVPN----NQGLTPFKL 203

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (266), Expect = 4e-27
 Identities = 45/204 (22%), Positives = 69/204 (33%), Gaps = 44/204 (21%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           V+     G+TPL++A      EI + LI+R             G +     I + N+  +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDR-------------GAD-----INLQNSISD 73

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           +    A +QG  +++  + +         N YG   L  AAE                  
Sbjct: 74  SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK----------------G 117

Query: 186 SFDMVLALLENSTS-VSHEGPNGKTALHAAAMRSFA----VDTALPKLLEKKKNLIKETD 240
             D V  LLE+    +  +   G TAL  A           D    KLL +        D
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV--KLLMENGADQSIKD 175

Query: 241 QYGWTPIHYAAYYGNYRTVNLLLE 264
             G T + YA   G      +L +
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  104 bits (262), Expect = 1e-26
 Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 51/239 (21%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
             +    L  A +    ++  +L +                +     +  V+ E NT L+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDT-------------TYQ-----VDEVDTEGNTPLN 44

Query: 130 EAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
            AV   ++++ K L     D       N+   +P   A     R+++L  +L++      
Sbjct: 45  IAVHNNDIEIAKALIDRGADIN---LQNSISDSPYLYAGAQ-GRTEILAYMLKHA----- 95

Query: 188 DMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPK-LLEKKKNLIKETDQYGWTP 246
                   N  +       G  AL  AA +   +D    K LLE  +  I   + +G+T 
Sbjct: 96  ----TPDLNKHNR-----YGGNALIPAAEKGH-IDNV--KLLLEDGREDIDFQNDFGYTA 143

Query: 247 IHYAAYYGNYR-----TVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
           +  A             V LL+E    A  +I D   + TA+  A  KG     + +  
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLME--NGADQSIKDNSGR-TAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 90.6 bits (226), Expect = 1e-21
 Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 33/208 (15%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA 214
                  L  A + + +                 +   L + +  V      G T L+ A
Sbjct: 3   TYEVGALLEAANQRDTK----------------KVKEILQDTTYQVDEVDTEGNTPLNIA 46

Query: 215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD 274
              +  ++ A  K L  +   I   +    +P  YA   G    +  +L    +  ++  
Sbjct: 47  VHNND-IEIA--KALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML--KHATPDLNK 101

Query: 275 KDRK-MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE 333
            +R    AL  AA KG    V+ ++    +  +  ++ G   L  A         +   +
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA--VGLREGNQLYQD 159

Query: 334 NNPLARSLIDEG------DAEGNTPLHV 355
              + + L++ G      D  G T +  
Sbjct: 160 ---IVKLLMENGADQSIKDNSGRTAMDY 184

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  107 bits (269), Expect = 6e-27
 Identities = 48/287 (16%), Positives = 91/287 (31%), Gaps = 64/287 (22%)

Query: 36  TILHINIISSERENVSTKFVEEILEKCPALLLQVNAK----GDTPLHLA---AKFGHFEI 88
             +      ++      + +   L++    L     K    G T L  A      G  + 
Sbjct: 15  RSIFD--AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 89  VRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKIL----- 143
           + +L++ A+       + +S  +           +  TALH A+ + N+ +V +L     
Sbjct: 73  IALLLDVAR-------KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 144 --------TREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLE 195
                                +G+ PL +AA   N+  +++ LL+N              
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACT-NQLAIVKFLLQNSW------------ 172

Query: 196 NSTSVSHEGPNGKTALHAAAM-------RSFAVDTALPKLLEKKKNLIKE------TDQY 242
               +S     G T LHA           +  V +   ++L     L         T++ 
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK 232

Query: 243 GWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKG 289
           G TP+  AA  G    +  +L+ +        +       H AA   
Sbjct: 233 GLTPLALAASSGKIGVLAYILQRE------IHEP---ECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 95.6 bits (238), Expect = 1e-22
 Identities = 46/272 (16%), Positives = 92/272 (33%), Gaps = 40/272 (14%)

Query: 6   FKAASAGNSEPFK---DMERDVIERLLTAKAKN-----TILHINIISSERENVST-KFVE 56
           F A +  N +  +      +   +RL  ++ K+     T L   +++       T   + 
Sbjct: 18  FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLL 77

Query: 57  EILEKCPALLLQVNA-------KGDTPLHLAAKFGHFEIVRVLIER-AKLAQRGDEEPES 108
           ++  K  +L   VNA       KG T LH+A +  +  +V +L+E  A +     +   +
Sbjct: 78  DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-----QAAAN 132

Query: 109 GVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTR--EDPGYPYSANNYGKTPLYMAA 166
           G    +   R         L  A     + +VK L +    P    + ++ G T L+   
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 167 EYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALP 226
           E  + +      + +  +    +   L             G T L  AA           
Sbjct: 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS---------- 242

Query: 227 KLLEKKKNLIK---ETDQYGWTPIHYAAYYGN 255
                K  ++    + + +     H AA++ +
Sbjct: 243 ---SGKIGVLAYILQREIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 82.1 bits (203), Expect = 6e-18
 Identities = 47/292 (16%), Positives = 83/292 (28%), Gaps = 77/292 (26%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIE-----RAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
                  +  A    + + +  L+      + +L     ++PE+G               
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETG--------------- 54

Query: 125 NTALHEAV---SQGNVDVVKIL---------TREDPGYPY-SANNYGKTPLYMAAEYENR 171
            T L +A+     G  D + +L          ++     Y  +   G+T L++A E    
Sbjct: 55  KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RN 113

Query: 172 SDMLRGLLEN------RTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAL 225
             ++  L+EN        +  F          T        G+  L  AA  +     A+
Sbjct: 114 MTLVTLLVENGADVQAAANGDF-------FKKTKGRPGFYFGELPLSLAACTN---QLAI 163

Query: 226 PKLLEKKKNL---IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQ--------------- 267
            K L +       I   D  G T +H      +    N    T                 
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 268 SASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYA 319
               I ++   +T L LAA  G    +  I+          +       H A
Sbjct: 224 KLEEITNRKG-LTPLALAASSGKIGVLAYILQ--------REIHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 78.7 bits (194), Expect = 1e-16
 Identities = 44/276 (15%), Positives = 70/276 (25%), Gaps = 77/276 (27%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSH-EGPNGKTALHA 213
             Y +  ++ A   ++    L  LL          +    +  T     +   GKT L  
Sbjct: 10  RLYDRRSIFDAVA-QSNCQELESLLP--------FLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 214 AAMRSFAVDTALPKLL-------EKKKNLI----KETDQYGWTPIHYAAYYGNYRTVNLL 262
           A +           LL       +  K  +     ++   G T +H A    N   V LL
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 263 LE------------TDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDN 310
           +E              +              L LAA                        
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN--------------------- 159

Query: 311 RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNR 370
                   A+V          L  N    + I   D+ GNT LH  A V   +      +
Sbjct: 160 ------QLAIV--------KFLLQNSWQPADISARDSVGNTVLH--ALVEVADNTVDNTK 203

Query: 371 STQANYDA-------VNKQNVSVRHVFNYGYTELKV 399
              + Y+        ++            G T L +
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 9e-10
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 13/106 (12%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           ++A+   G+T LH   +     +       +           + + P  ++  + N +  
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTS--MYNEILILGAKLHPTLKLEEITNRKGL 234

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENR 171
           T L  A S G + V+  + + +         +     + AA + + 
Sbjct: 235 TPLALAASSGKIGVLAYILQRE--------IHEPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 31/152 (20%), Positives = 48/152 (31%), Gaps = 30/152 (19%)

Query: 236 IKETDQYGWTPIHYAAYYGNYRTVNLLLET-DQSASNIADKDRK-----MTALHLA---A 286
            K    Y    I  A    N + +  LL    +S   + D + K      T L  A    
Sbjct: 6   EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 287 GKGDARTVERIISGNPKC----------YELVDNRGCNFLHYAMVSFHVGQLRNLLEN-- 334
             G   T+  ++    K           Y     +G   LH A+   ++  +  L+EN  
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 335 --------NPLARSLIDEGDAEGNTPLHVLAA 358
                   +   ++    G   G  PL  LAA
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLS-LAA 156

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 35/114 (30%)

Query: 35  NTILHINIISSERENVSTKFVEEI----------LEKCPALLLQVNAKGDTPLHLAAKFG 84
           NT+LH  +  ++    +TKFV  +          L     L    N KG TPL LAA  G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

Query: 85  HFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVD 138
              ++  +++R                            +    H A    +  
Sbjct: 245 KIGVLAYILQR-------------------------EIHEPECRHAAAHHHHHH 273

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  106 bits (266), Expect = 1e-26
 Identities = 41/246 (16%), Positives = 68/246 (27%), Gaps = 70/246 (28%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           V ++ +TP   AA+    + +  L+E                      +  V+    TAL
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 81

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSAN------NYGKTPLYMAAEYENRSDMLRGLLENR 182
                 G+   V++L          A+        G T L+MAA Y              
Sbjct: 82  LFVAGLGSDKCVRLLAE------AGADLDHRDMRGGLTALHMAAGY-------------- 121

Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMR----------SFAVD---TALPKLL 229
                ++V AL+E    +  E   G TAL  A              F        +  +L
Sbjct: 122 --VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 179

Query: 230 EKKKNLIKET------DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH 283
           E +     E          G    +   +        +        +    KD +   L 
Sbjct: 180 EGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV---HVAEDVAKDYE-DGLE 235

Query: 284 LAAGKG 289
            A  + 
Sbjct: 236 YAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =   99 bits (250), Expect = 2e-24
 Identities = 38/292 (13%), Positives = 70/292 (23%), Gaps = 63/292 (21%)

Query: 68  QVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
           +   +G     +  K GH                         +        V +E  T 
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYI-------------AAD--------VVSEYETP 48

Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
              A  + +   +  L   +     + +  G+T L   A   +                 
Sbjct: 49  WWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSD---------------- 90

Query: 188 DMVLALLENSTSVSH-EGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTP 246
             V  L E    + H +   G TALH AA      +    + L +    I+  D+ G T 
Sbjct: 91  KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR-PEVV--EALVELGADIEVEDERGLTA 147

Query: 247 IHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYE 306
           +  A            ++       I  +   +  +        A   E +         
Sbjct: 148 LELAREILKTTPKGNPMQ---FGRRIGLEK--VINVLEGQVFEYAEVDEIVEK------- 195

Query: 307 LVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
               +G +  +                +     +     D E    L    A
Sbjct: 196 --RGKGKDVEYLVRWKDGGDCEWVKGVHV----AEDVAKDYE--DGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 31/159 (19%), Positives = 46/159 (28%), Gaps = 16/159 (10%)

Query: 201 SHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVN 260
           S     G               +              +      TP   AA   + + ++
Sbjct: 9   SRTAGEGAMEYLIEWKDG---HSPSWVPSSYIAA---DVVSEYETPWWTAARKADEQALS 62

Query: 261 LLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYA 319
            LLE       +  D++ + TAL   AG G  + V  +              G   LH A
Sbjct: 63  QLLE---DRDVDAVDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118

Query: 320 MVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                   +  L+E    A   I+  D  G T L  LA 
Sbjct: 119 AGYVRPEVVEALVELG--AD--IEVEDERGLTALE-LAR 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 19/133 (14%)

Query: 230 EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKG 289
           E  K +   T   G          G+  +          A+++  +    T    AA K 
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI---AADVVSEYE--TPWWTAARKA 56

Query: 290 DARTVERIISG-NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGD 346
           D + + +++   +    + VD  G   L +         +R L E   +      +D  D
Sbjct: 57  DEQALSQLLEDRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRD 107

Query: 347 AE-GNTPLHVLAA 358
              G T LH +AA
Sbjct: 108 MRGGLTALH-MAA 119

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  104 bits (261), Expect = 1e-26
 Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 49/219 (22%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
               +    + G+   VR+ ++        + +   G           ++   + LH A 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDN------TENDLNQG-----------DDHGFSPLHWAC 47

Query: 133 SQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV 190
            +G   VV++L             N    TPL++AA + +R                D+V
Sbjct: 48  REGRSAVVEMLIMRGARI---NVMNRGDDTPLHLAASHGHR----------------DIV 88

Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA 250
             LL+    ++    +G   LH A         A  + L     L+   ++YG  P+  A
Sbjct: 89  QKLLQYKADINAVNEHGNVPLHYACFWGQ-DQVA--EDLVANGALVSICNKYGEMPVDKA 145

Query: 251 AYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKG 289
                                  + +R          KG
Sbjct: 146 KAPLRELLRERAE------KMGQNLNR--IPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  102 bits (256), Expect = 6e-26
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 23/180 (12%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           + E    +     +GN   V++            +++G +PL+ A               
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE------------ 49

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD 240
            R+     +V  L+     ++       T LH AA      D    + L + K  I   +
Sbjct: 50  GRS----AVVEMLIMRGARINVMNRGDDTPLHLAASHGH-RDIV--QKLLQYKADINAVN 102

Query: 241 QYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
           ++G  P+HYA ++G  +    L+     A  +I +K  +   +  A         ER   
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVA--NGALVSICNKYGE-MPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.3 bits (207), Expect = 4e-19
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 205 PNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
           P     +        AV   L   L+  +N + + D +G++P+H+A   G    V +L+ 
Sbjct: 3   PEFMDDIFTQCREGNAVAVRL--WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 265 TDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLHYA 319
             + A  N+ ++    T LHLAA  G    V++++      N       +  G   LHYA
Sbjct: 61  --RGARINVMNRGDD-TPLHLAASHGHRDIVQKLLQYKADINAV-----NEHGNVPLHYA 112

Query: 320 MVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                     +L+ N     +L+   +  G  P+   A 
Sbjct: 113 CFWGQDQVAEDLVANG----ALVSICNKYGEMPVD-KAK 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.4 bits (197), Expect = 1e-17
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 27/169 (15%)

Query: 154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHA 213
            +      ++        +  +R  L+N                  ++    +G + LH 
Sbjct: 1   GSPEFMDDIFTQCRE-GNAVAVRLWLDN--------------TENDLNQGDDHGFSPLHW 45

Query: 214 AAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NI 272
           A            ++L  +   I   ++   TP+H AA +G+   V  LL+    A  N 
Sbjct: 46  ACREGR-SAVV--EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ--YKADINA 100

Query: 273 ADKDRKMTALHLAAGKGDARTVERIIS-G-NPKCYELVDNRGCNFLHYA 319
            ++      LH A   G  +  E +++ G       + +  G   +  A
Sbjct: 101 VNEHGN-VPLHYACFWGQDQVAEDLVANGALV---SICNKYGEMPVDKA 145

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 23/116 (19%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           +N      DTPLHLAA  GH +IV+ L++                +     I  VN   N
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQY-------------KAD-----INAVNEHGN 106

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN 181
             LH A   G   V + L           N YG+ P+  A     R  +     + 
Sbjct: 107 VPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAP-LRELLRERAEKM 160

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  102 bits (258), Expect = 2e-26
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 38/197 (19%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
            +     L  AA+ G  + VR+L+               G +     +   +    T LH
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMAN-------------GAD-----VNAEDASGWTPLH 52

Query: 130 EAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDM 189
            A   G++++V++L +       + ++ G TPL +AA +                   ++
Sbjct: 53  LAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALF----------------GHLEI 95

Query: 190 VLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHY 249
           V  LL+N   V+     G T LH AAM    ++    ++L K    +   D++G T    
Sbjct: 96  VEVLLKNGADVNANDMEGHTPLHLAAMFGH-LEIV--EVLLKNGADVNAQDKFGKTAFDI 152

Query: 250 AAYYGNYRTVNLLLETD 266
           +   GN     +L + +
Sbjct: 153 SIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 77.4 bits (192), Expect = 3e-17
 Identities = 43/172 (25%), Positives = 62/172 (36%), Gaps = 32/172 (18%)

Query: 153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH 212
              +     L  AA                     D V  L+ N   V+ E  +G T LH
Sbjct: 9   HHGSDLGKKLLEAARAGRD----------------DEVRILMANGADVNAEDASGWTPLH 52

Query: 213 AAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-N 271
            AA     ++    ++L K    +   D  G TP+  AA +G+   V +LL+    A  N
Sbjct: 53  LAAFNGH-LEIV--EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK--NGADVN 107

Query: 272 IADKDRKMTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLHYA 319
             D +   T LHLAA  G    VE ++  G   N +     D  G      +
Sbjct: 108 ANDMEGH-TPLHLAAMFGHLEIVEVLLKNGADVNAQ-----DKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 67.8 bits (167), Expect = 9e-14
 Identities = 42/161 (26%), Positives = 57/161 (35%), Gaps = 52/161 (32%)

Query: 202 HEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNL 261
           H G +    L  AA      D    ++L      +   D  GWTP+H AA+ G+   V +
Sbjct: 9   HHGSDLGKKLLEAARAGR-DDEV--RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 262 LLETDQSASNIADKDRK----MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLH 317
           LL       N AD +      MT L LAA  G    VE ++             G +   
Sbjct: 66  LL------KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-----------NGAD--- 105

Query: 318 YAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                                   ++  D EG+TPLH LAA
Sbjct: 106 ------------------------VNANDMEGHTPLH-LAA 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  102 bits (258), Expect = 3e-26
 Identities = 36/208 (17%), Positives = 60/208 (28%), Gaps = 48/208 (23%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
               +H  A  G    +   IE+                     I   + E  T L  A 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQ-------------ENV-----INHTDEEGFTPLMWAA 44

Query: 133 SQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV 190
           + G + VV+ L +   D   P       ++ L +A           G          D+V
Sbjct: 45  AHGQIAVVEFLLQNGAD---PQLLGKGRESALSLACSK--------G--------YTDIV 85

Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA 250
             LL+    V+    NG T L  A   +  V     K+L +           G+  +  A
Sbjct: 86  KMLLDCGVDVNEYDWNGGTPLLYAVHGNH-VKCV--KMLLESGADPTIETDSGYNSMDLA 142

Query: 251 AYYGNYRTVNLLLETDQSASNIADKDRK 278
              G      ++       S++    + 
Sbjct: 143 VALGYRSVQQVIE------SHLLKLLQN 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 98.6 bits (247), Expect = 8e-25
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 24/176 (13%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
           + ++H+  +QG +  +     ++       +  G TPL  AA +        G +     
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQEN-VINHTDEEGFTPLMWAAAH--------GQIA---- 50

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW 244
               +V  LL+N       G   ++AL  A  + +  D    K+L      + E D  G 
Sbjct: 51  ----VVEFLLQNGADPQLLGKGRESALSLACSKGY-TDIV--KMLLDCGVDVNEYDWNGG 103

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
           TP+ YA +  + + V +LLE    A   I        ++ LA   G     + I S
Sbjct: 104 TPLLYAVHGNHVKCVKMLLE--SGADPTIETDSGY-NSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 82.4 bits (205), Expect = 6e-19
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 38/151 (25%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           +N     G TPL  AA  G   +V  L++              G +      +++   + 
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQN-------------GAD-----PQLLGKGRE 70

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           +AL  A S+G  D+VK+L           +  G TPL  A    +               
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGV-DVNEYDWNGGTPLLYAVHGNH--------------- 114

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAM 216
               V  LLE+    + E  +G  ++  A  
Sbjct: 115 -VKCVKMLLESGADPTIETDSGYNSMDLAVA 144

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 81.7 bits (203), Expect = 1e-18
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 20/155 (12%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
               ++H  A +   +         +++N+I  TD+ G+TP+ +AA +G    V  LL+ 
Sbjct: 2   ANSLSVHQLAAQGE-MLYL--ATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ- 57

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIISG----NPKCYELVDNRGCNFLHYAM 320
              A   +  K R  +AL LA  KG    V+ ++      N       D  G   L YA+
Sbjct: 58  -NGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGVDVNEY-----DWNGGTPLLYAV 110

Query: 321 VSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
              HV  ++ LLE+     +        G   + +
Sbjct: 111 HGNHVKCVKMLLESG----ADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 3/30 (10%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIER 95
              +   G   + LA   G+  + +V+   
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  104 bits (261), Expect = 5e-26
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 57/245 (23%)

Query: 70  NAKGDTPLHLAA---KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNT 126
            + G T L  A    + G    +  L++       G+ +P    +           + ++
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDSGNPKPLVNAQ-----CTDEFYQGHS 92

Query: 127 ALHEAVSQGNVDVVKIL------------TREDPGYPYSANNYGKTPLYMAAEYENRSDM 174
           ALH A+ + ++  VK+L             R    +  +   +G+ PL +AA    + D+
Sbjct: 93  ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA-CTKQWDV 151

Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN 234
           +  LLEN                 S+      G T LHA                     
Sbjct: 152 VTYLLENP------------HQPASLEATDSLGNTVLHALV------------------- 180

Query: 235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTV 294
            +   +    + +    Y G  +    L  T Q    I++    +T L LAA +G     
Sbjct: 181 -MIADNSPENSALVIHMYDGLLQMGARLCPTVQLE-EISNHQ-GLTPLKLAAKEGKIEIF 237

Query: 295 ERIIS 299
             I+ 
Sbjct: 238 RHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 94.1 bits (234), Expect = 3e-22
 Identities = 47/256 (18%), Positives = 76/256 (29%), Gaps = 53/256 (20%)

Query: 126 TALHEAVSQGNVDVVKIL-------TREDPGYPYSANNYGKTPLYMAA--EYENRSDMLR 176
             L   VS+G  + +  L       ++      Y+  + GKT L  A     +  +  + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 177 GLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL------- 229
            LL+       D        +   + E   G +ALH A  +         KLL       
Sbjct: 64  PLLQ----IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR---SLQCVKLLVENGADV 116

Query: 230 ------EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTAL 282
                    +        +G  P+  AA    +  V  LLE     +++   D    T L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 283 HLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLI 342
           H      D                  ++   + L   M    +     L         L 
Sbjct: 177 HALVMIAD------------------NSPENSALVIHMYDGLLQMGARLCPTVQ----LE 214

Query: 343 DEGDAEGNTPLHVLAA 358
           +  + +G TPL  LAA
Sbjct: 215 EISNHQGLTPLK-LAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 35  NTILHINIISSERENVSTKF----------VEEILEKCPALLLQVNAKGDTPLHLAAKFG 84
           NT+LH  ++ ++    ++            +   L     L    N +G TPL LAAK G
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232

Query: 85  HFEIVRVLIER 95
             EI R +++R
Sbjct: 233 KIEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 29/145 (20%)

Query: 242 YGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRK----MTALHLAA---GKGDAR 292
           +    +      G    +  LLE     S         +     T L  A      G   
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 293 TVERIISGNPKCYEL----------VDNRGCNFLHYAMVSFHVGQLRNLLEN-------- 334
            +  ++  +                   +G + LH A+    +  ++ L+EN        
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 335 -NPLARSLIDEGDAEGNTPLHVLAA 358
                +         G  PL  LAA
Sbjct: 121 CGRFFQKHQGTCFYFGELPLS-LAA 144

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  105 bits (263), Expect = 9e-26
 Identities = 45/279 (16%), Positives = 86/279 (30%), Gaps = 40/279 (14%)

Query: 21  ERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD----TP 76
            +++   L    +       +    ++       ++E+ +  P   L +N   D    TP
Sbjct: 75  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTP 134

Query: 77  LHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGN 136
           LH      + E+V+ L++              G           +N   + L +AV   N
Sbjct: 135 LHWLTSIANLELVKHLVKH-------------GSNRLYG-----DNMGESCLVKAVKSVN 176

Query: 137 ---VDVVKILTREDPGYPYSANNYGKTPLYMAAEY---ENRSDMLRGLLENRTSASFDMV 190
                  + L           ++  +T L+           S   +  L+        ++
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI-------LM 229

Query: 191 LALLENSTSVSHEGPNGKTALH-AAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHY 249
             +++        G N K +                  L     N++   D  G T ++ 
Sbjct: 230 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 289

Query: 250 AAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAG 287
           AA  GN   V+ LL+    A   IA+K      +   AG
Sbjct: 290 AARLGNISIVDALLD--YGADPFIANKSGL-RPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.6 bits (201), Expect = 2e-17
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 29/213 (13%)

Query: 120 VNNEKNTALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
           V+   NT LH   S  N+++VK L +   +       +N G++ L  A +  N       
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVN------- 176

Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRS----------FAVDTALPK 227
              N  S +F+ +L  L     +       +T LH   + S          + +D  +  
Sbjct: 177 ---NYDSGTFEALLDYLYPCLILEDS--MNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231

Query: 228 LLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAA 286
           +++K+   I+       +  +          +  L      A+ +  +D    T L++AA
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291

Query: 287 GKGDARTVERIISGNPKCYELVDNRGCNFLHYA 319
             G+   V+ ++        + +  G   + + 
Sbjct: 292 RLGNISIVDALLDYGADP-FIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 78.9 bits (194), Expect = 1e-16
 Identities = 29/252 (11%), Positives = 69/252 (27%), Gaps = 35/252 (13%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
            +      H +      +V               + +G TPL+                 
Sbjct: 94  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI------------ 141

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT-ALPKLLEKKKNLIKET 239
               A+ ++V  L+++ ++  +    G++ L  A       D+     LL+     +   
Sbjct: 142 ----ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197

Query: 240 DQYGWTPIHYAAYYGN----------YRTVNLLLETDQSASNIADKDRKMTALHLAAGKG 289
           D    T +H+                Y  + +     +    I     +  +        
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 290 DARTVERIISGNPKCYELV---DNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGD 346
              ++   +        ++   D+ G   L+ A    ++  +  LL+            +
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD----PFIAN 313

Query: 347 AEGNTPLHVLAA 358
             G  P+    A
Sbjct: 314 KSGLRPVD-FGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.7 bits (126), Expect = 7e-08
 Identities = 30/201 (14%), Positives = 63/201 (31%), Gaps = 50/201 (24%)

Query: 8   AASAGNSEPFKDMERDVIERLLTAKA----KN----TILHINIISSERENVSTKFVEEIL 59
             S  N E        +++ L+   +     +    + L   + S    N  +   E +L
Sbjct: 138 LTSIANLE--------LVKHLVKHGSNRLYGDNMGESCLVKAVKS--VNNYDSGTFEALL 187

Query: 60  EKCPALLLQVNAKGDTPLHLAAKF----GHFEIVRVLIER--AKLAQRGD---------- 103
           +     L+  ++   T LH         G     +  ++     + ++ +          
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 247

Query: 104 ------------EEPESGVEPFRQMIRMVN---NEKNTALHEAVSQGNVDVVKILTREDP 148
                       +     ++    +  M+N   +  +T L+ A   GN+ +V  L     
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307

Query: 149 GYPYSANNYGKTPLYMAAEYE 169
             P+ AN  G  P+   A  E
Sbjct: 308 D-PFIANKSGLRPVDFGAGLE 327

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 24/216 (11%), Positives = 48/216 (22%), Gaps = 48/216 (22%)

Query: 180 ENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKET 239
            +  S+   ++ AL     + + +    +  L       F     +P  L    +     
Sbjct: 36  SDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLL---FPEIQEMPTSLNNDSSNRNSE 92

Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
                    + ++    + VN      Q   NI   +   T LH      +   V+ ++ 
Sbjct: 93  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152

Query: 300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV 359
                       G N                              GD  G + L      
Sbjct: 153 -----------HGSN---------------------------RLYGDNMGESCLVKAVKS 174

Query: 360 RPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYT 395
                           Y  +  ++       +   T
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILED-------SMNRT 203

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (252), Expect = 3e-25
 Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 58/237 (24%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           ++  G+    +  +    + +  L    +                       ++   T L
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN-YR-----------------------DSYNRTPL 39

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGLLENRT 183
             A   G  + +  L                   G T L  A +                
Sbjct: 40  MVACMLGMENAIDKLVENF------DKLEDKDIEGSTALIWAVKNNRL------------ 81

Query: 184 SASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYG 243
                +   LL   ++V+ +  +GKT L  + +  +  + +    L +    + + +  G
Sbjct: 82  ----GIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY-SEMS--YFLLEHGANVNDRNLEG 134

Query: 244 WTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
            TP+  A+ YG    V  LLE    A  +  D     TA   A   G    ++    
Sbjct: 135 ETPLIVASKYGRSEIVKKLLE--LGADISARDLTGL-TAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 93.6 bits (234), Expect = 1e-22
 Identities = 39/206 (18%), Positives = 64/206 (31%), Gaps = 51/206 (24%)

Query: 67  LQVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNE 123
              N +     TPL +A   G    +  L+E                +     +   + E
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-------------FDK-----LEDKDIE 67

Query: 124 KNTALHEAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGL 178
            +TAL  AV    + + + L          +N       GKTPL  +  +          
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLS------KGSNVNTKDFSGKTPLMWSIIFGY-------- 113

Query: 179 LENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKE 238
                    +M   LLE+  +V+     G+T L  A+      +    K L +    I  
Sbjct: 114 --------SEMSYFLLEHGANVNDRNLEGETPLIVASKYGR-SEIV--KKLLELGADISA 162

Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLE 264
            D  G T    A  +G    + +  E
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.2 bits (220), Expect = 9e-21
 Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 45/208 (21%)

Query: 120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLL 179
           ++            +     +  L           ++Y +TPL +A              
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGME-------- 48

Query: 180 ENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKET 239
                   + +  L+EN   +  +   G TAL  A   +  +  A  + L  K + +   
Sbjct: 49  --------NAIDKLVENFDKLEDKDIEGSTALIWAVKNNR-LGIA--EKLLSKGSNVNTK 97

Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK----MTALHLAAGKGDARTVE 295
           D  G TP+ ++  +G       LL       + A+ + +     T L +A+  G +  V+
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLL------EHGANVNDRNLEGETPLIVASKYGRSEIVK 151

Query: 296 RIIS-G---NPKCYELVDNRGCNFLHYA 319
           +++  G   + +     D  G      A
Sbjct: 152 KLLELGADISAR-----DLTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 74.7 bits (185), Expect = 5e-16
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 37/163 (22%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           NG+        +S         + +    L    D Y  TP+  A   G    ++ L+  
Sbjct: 7   NGEIVEKIKDEKS---------INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLV-- 55

Query: 266 DQSASNIADKDRK----MTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLH 317
                N    + K     TAL  A         E+++S G   N K     D  G   L 
Sbjct: 56  ----ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-----DFSGKTPLM 106

Query: 318 YAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHVLAA 358
           ++++  +      LLE+  N      +++ + EG TPL  +A+
Sbjct: 107 WSIIFGYSEMSYFLLEHGAN------VNDRNLEGETPLI-VAS 142

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 64.3 bits (158), Expect = 2e-12
 Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 33/122 (27%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           VN K   G TPL  +  FG+ E+   L+E              G       +   N E  
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-------------GAN-----VNDRNLEGE 135

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGLLE 180
           T L  A   G  ++VK L          A+       G T    A  +  R ++++   E
Sbjct: 136 TPLIVASKYGRSEIVKKLLE------LGADISARDLTGLTAEASARIF-GRQEVIKIFTE 188

Query: 181 NR 182
            R
Sbjct: 189 VR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 56.6 bits (138), Expect = 1e-09
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 26/125 (20%)

Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
           D+ G             + ++ L        N  D   + T L +A   G    +++++ 
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLR-------NYRDSYNR-TPLMVACMLGMENAIDKLVE 56

Query: 300 -G---NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPL 353
                  K     D  G   L +A+ +  +G    LL    N      ++  D  G TPL
Sbjct: 57  NFDKLEDK-----DIEGSTALIWAVKNNRLGIAEKLLSKGSN------VNTKDFSGKTPL 105

Query: 354 HVLAA 358
              + 
Sbjct: 106 M-WSI 109

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAK 97
           ++A+   G T    A  FG  E++++  E  +
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 99.0 bits (248), Expect = 4e-25
 Identities = 37/195 (18%), Positives = 60/195 (30%), Gaps = 43/195 (22%)

Query: 72  KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
           +    L  AA  G  + VR L+ R              V         +N    TAL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHR------------ELVH-----PDALNRFGKTALQVM 43

Query: 132 VSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDM 189
              G+  +   L ++   P      +  G +P++ AA          G          D 
Sbjct: 44  -MFGSTAIALELLKQGASPN---VQDTSGTSPVHDAART--------G--------FLDT 83

Query: 190 VLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHY 249
           +  L+E+   V+     G   +H A              L  + + +   D  G TP+  
Sbjct: 84  LKVLVEHGADVNVPDGTGALPIHLAVQEGH-TAVV--SFLAAESD-LHRRDARGLTPLEL 139

Query: 250 AAYYGNYRTVNLLLE 264
           A   G    V++L  
Sbjct: 140 ALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 99.0 bits (248), Expect = 4e-25
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 23/175 (13%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
              L  A ++G+V  V+ L   +  +P + N +GKT L +                  T 
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-------------GST- 48

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW 244
               + L LL+   S + +  +G + +H AA   F +DT   K+L +    +   D  G 
Sbjct: 49  ---AIALELLKQGASPNVQDTSGTSPVHDAARTGF-LDTL--KVLVEHGADVNVPDGTGA 102

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
            PIH A   G+   V+ L    +S  +  D     T L LA  +G    V+ +  
Sbjct: 103 LPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGL-TPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 28/123 (22%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
            LL+     N +   G +P+H AA+ G  + ++VL+E              G +     +
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-------------GAD-----V 94

Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
            + +      +H AV +G+  VV  L  E     +  +  G TPL +A +     D++  
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQR-GAQDLVDI 151

Query: 178 LLE 180
           L  
Sbjct: 152 LQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.9 bits (162), Expect = 3e-13
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 46/153 (30%)

Query: 207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETD 266
               L  AA R    +    +LL ++       +++G T +    + G+      LL+  
Sbjct: 2   AGDRLSGAAARGDVQEVR--RLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK-- 56

Query: 267 QSAS-NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHV 325
           Q AS N+ D     + +H AA  G   T++ ++             G +           
Sbjct: 57  QGASPNVQDTSGT-SPVHDAARTGFLDTLKVLVE-----------HGAD----------- 93

Query: 326 GQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                           ++  D  G  P+H LA 
Sbjct: 94  ----------------VNVPDGTGALPIH-LAV 109

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 98.2 bits (246), Expect = 7e-25
 Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 51/196 (26%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIER-AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
               L  AA+ G  + VR+L+   A                        +    + LH A
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT--------------------DWLGTSPLHLA 41

Query: 132 VSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
              G+    ++L R         +        +TPL+MAA   +                
Sbjct: 42  AQYGHFSTTEVLLR------AGVSRDARTKVDRTPLHMAASEGHA--------------- 80

Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTP 246
            ++V  LL++   V+ +     TALH A   +   +    +LL K    +    ++  T 
Sbjct: 81  -NIVEVLLKHGADVNAKDMLKMTALHWATEHNH-QEVV--ELLIKYGADVHTQSKFCKTA 136

Query: 247 IHYAAYYGNYRTVNLL 262
              +   GN     +L
Sbjct: 137 FDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 95.9 bits (240), Expect = 6e-24
 Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
              L EA   G  D V+IL     G P++ +  G +PL++AA+Y +              
Sbjct: 3   GKKLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHF------------- 47

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW 244
                   LL    S        +T LH AA      +    ++L K    +   D    
Sbjct: 48  ---STTEVLLRAGVSRDARTKVDRTPLHMAASEGH-ANIV--EVLLKHGADVNAKDMLKM 101

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVE 295
           T +H+A  + +   V LL++    A  +   K  K TA  ++   G+    E
Sbjct: 102 TALHWATEHNHQEVVELLIK--YGADVHTQSKFCK-TAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 26/160 (16%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           +    L  AA      D    ++L         TD  G +P+H AA YG++ T  +LL  
Sbjct: 1   DLGKKLLEAARAGQ-DDEV--RILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLR- 55

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLHYAM 320
               S +   K  + T LH+AA +G A  VE ++  G   N K     D      LH+A 
Sbjct: 56  -AGVSRDARTKVDR-TPLHMAASEGHANIVEVLLKHGADVNAK-----DMLKMTALHWAT 108

Query: 321 VSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHVLAA 358
              H   +  L++   +      +        T    ++ 
Sbjct: 109 EHNHQEVVELLIKYGAD------VHTQSKFCKTAFD-ISI 141

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  100 bits (252), Expect = 9e-25
 Identities = 39/244 (15%), Positives = 66/244 (27%), Gaps = 34/244 (13%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
             +L                    G     N      L  ++          G       
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAH--GMRVKFNPLPLALLLDSSLE--------G------- 48

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW 244
             FD+V  ++      S     G TALH A       +    K L +    +   D  GW
Sbjct: 49  -EFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH-TEIV--KFLVQFGVNVNAADSDGW 104

Query: 245 TPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNP 302
           TP+H AA   N +    L+E      A   +D             +G  +  + +     
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA-ADKCEEMEEGYTQCSQFLYGVQE 163

Query: 303 KCYELVDNRGCNFLHYA------MVSFHVGQLRNLLE---NNPLARSLIDEGDAEGNTPL 353
           K   +++      L          +    G    ++     + +        D EG  P 
Sbjct: 164 KM-GIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPR 222

Query: 354 HVLA 357
           ++L 
Sbjct: 223 NLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 84.6 bits (210), Expect = 5e-19
 Identities = 30/249 (12%), Positives = 66/249 (26%), Gaps = 40/249 (16%)

Query: 156 NYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAA 215
             G+  L               L +             + +   V    P     L  ++
Sbjct: 3   ITGQVSLPPGKRT--------NLRK--------TGSERIAHGMRVK-FNPLPLALLLDSS 45

Query: 216 MRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIAD 274
           +     D    + +  + +     +  G T +H A   G+   V  L++     + N AD
Sbjct: 46  LEGE-FDLV--QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGVNVNAAD 100

Query: 275 KDRKMTALHLAAGKGDARTVERIIS--GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLL 332
            D   T LH AA   + +  + ++            D +        M   +    + L 
Sbjct: 101 SDGW-TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159

Query: 333 ENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF-- 390
                 +  +   +      L         +  D +          +++++      +  
Sbjct: 160 GVQ--EK--MGIMNKGVIYALWDYEP----QNDDELPMKEGDCMTIIHREDEDEIEWWWA 211

Query: 391 ----NYGYT 395
                 GY 
Sbjct: 212 RLNDKEGYV 220

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 78.8 bits (195), Expect = 5e-17
 Identities = 32/200 (16%), Positives = 53/200 (26%), Gaps = 49/200 (24%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
            +     G T LH A   GH EIV+ L++              GV      +   +++  
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQF-------------GVN-----VNAADSDGW 104

Query: 126 TALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRT 183
           T LH A S  NV V K L            ++           E                
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE--------------- 149

Query: 184 SASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFA----VDTALPKLLEKKKNLIKE- 238
                    L      +         AL     ++       +     ++ ++     E 
Sbjct: 150 -GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEW 208

Query: 239 -----TDQYGWTPIHYAAYY 253
                 D+ G+ P +    Y
Sbjct: 209 WWARLNDKEGYVPRNLLGLY 228

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 17/123 (13%)

Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
           +  G   +         +T +  +        +      +  L  ++ +G+   V+RII 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIA--HGM-RVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 300 --GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHV 355
              +P    L ++ G   LH A+ + H   ++ L++   N      ++  D++G TPLH 
Sbjct: 59  EVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLH- 108

Query: 356 LAA 358
            AA
Sbjct: 109 CAA 111

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 98.2 bits (246), Expect = 1e-24
 Identities = 42/201 (20%), Positives = 69/201 (34%), Gaps = 48/201 (23%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
            N++ D  L  AAK G  E V+ L                 V       R +   ++T L
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQ------------SVN-----CRDIEGRQSTPL 46

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGLLENRT 183
           H A     V VV+ L +      + A+       G  PL+ A  Y +             
Sbjct: 47  HFAAGYNRVSVVEYLLQ------HGADVHAKDKGGLVPLHNACSYGHY------------ 88

Query: 184 SASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYG 243
               ++   L+++   V+       T LH AA +    +    KLL +      + ++ G
Sbjct: 89  ----EVAELLVKHGAVVNVADLWKFTPLHEAAAKGK-YEIC--KLLLQHGADPTKKNRDG 141

Query: 244 WTPIHYAAYYGNYRTVNLLLE 264
            TP+      G+    +LL  
Sbjct: 142 NTPLDLVK-DGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 94.4 bits (236), Expect = 2e-23
 Identities = 49/182 (26%), Positives = 70/182 (38%), Gaps = 24/182 (13%)

Query: 119 MVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGL 178
           M N+E +  L EA   G+V+ VK L                TPL+ AA Y          
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY---------- 52

Query: 179 LENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKE 238
             NR      +V  LL++   V  +   G   LH A       + A  +LL K   ++  
Sbjct: 53  --NRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSYGH-YEVA--ELLVKHGAVVNV 103

Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERI 297
            D + +TP+H AA  G Y    LLL+    A     ++D   T L L    GD    + +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQ--HGADPTKKNRDGN-TPLDLVK-DGDTDIQDLL 159

Query: 298 IS 299
             
Sbjct: 160 RG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 40/202 (19%), Positives = 64/202 (31%), Gaps = 60/202 (29%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA 214
           N+     L  AA+     + ++ L                  S +         T LH A
Sbjct: 5   NSEADRQLLEAAKA-GDVETVKKLCTV--------------QSVNCRDIEGRQSTPLHFA 49

Query: 215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIA 273
           A     V     + L +    +   D+ G  P+H A  YG+Y    LL++    A  N+A
Sbjct: 50  A-GYNRVSVV--EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVA 104

Query: 274 DKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE 333
           D  +  T LH AA KG     + ++             G +                   
Sbjct: 105 DLWKF-TPLHEAAAKGKYEICKLLLQ-----------HGAD------------------- 133

Query: 334 NNPLARSLIDEGDAEGNTPLHV 355
                     + + +GNTPL +
Sbjct: 134 --------PTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 273 ADKDRK-MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNL 331
           A  + +    L  AA  GD  TV+++ +        ++ R    LH+A     V  +  L
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 332 LEN--NPLARSLIDEGDAEGNTPLHVLAA 358
           L++  +      +   D  G  PLH  A 
Sbjct: 62  LQHGAD------VHAKDKGGLVPLH-NAC 83

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 96.3 bits (241), Expect = 5e-24
 Identities = 37/194 (19%), Positives = 57/194 (29%), Gaps = 40/194 (20%)

Query: 72  KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
                L  AA  G  E +  L++               V      +   N    TAL   
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQN-------------NVN-----VNAQNGFGRTALQVM 45

Query: 132 VSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
              GN ++ + L       P   +  G   ++ AA                     D + 
Sbjct: 46  -KLGNPEIARRLLLRGA-NPDLKDRTGFAVIHDAARA----------------GFLDTLQ 87

Query: 192 ALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL-EKKKNLIKETDQYGWTPIHYA 250
            LLE    V+ E   G   LH AA     +     + L +   + +   +  G T    A
Sbjct: 88  TLLEFQADVNIEDNEGNLPLHLAAKEGH-LRVV--EFLVKHTASNVGHRNHKGDTACDLA 144

Query: 251 AYYGNYRTVNLLLE 264
             YG    V+L+  
Sbjct: 145 RLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 95.9 bits (240), Expect = 6e-24
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 34/186 (18%)

Query: 120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDM 174
           +       L  A ++G+++ +  L + +       N      +G+T L +          
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNN------VNVNAQNGFGRTALQVMKLG------ 48

Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN 234
                      + ++   LL    +   +   G   +H AA   F +DT   + L + + 
Sbjct: 49  -----------NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF-LDTL--QTLLEFQA 94

Query: 235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDART 293
            +   D  G  P+H AA  G+ R V  L++   +ASN+  ++ K  TA  LA   G    
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVK--HTASNVGHRNHKGDTACDLARLYGRNEV 152

Query: 294 VERIIS 299
           V  + +
Sbjct: 153 VSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.1 bits (186), Expect = 2e-16
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 61/202 (30%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA 214
                  L  AA   +                 + + +LL+N+ +V+ +   G+TAL   
Sbjct: 2   AEPWGNELASAAARGDL----------------EQLTSLLQNNVNVNAQNGFGRTALQVM 45

Query: 215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIA 273
            + +   + A  + L  +       D+ G+  IH AA  G   T+  LLE    A  NI 
Sbjct: 46  KLGN--PEIA--RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE--FQADVNIE 99

Query: 274 DKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE 333
           D +     LHLAA +G  R VE ++           +   N                   
Sbjct: 100 DNEGN-LPLHLAAKEGHLRVVEFLVK----------HTASN------------------- 129

Query: 334 NNPLARSLIDEGDAEGNTPLHV 355
                   +   + +G+T   +
Sbjct: 130 --------VGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.0 bits (152), Expect = 9e-12
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 47/154 (30%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
                L +AA R   ++      L +    +   + +G T +      GN      LL  
Sbjct: 4   PWGNELASAAARGD-LEQL--TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL- 58

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH 324
            + A+ ++ D+      +H AA  G   T++ ++               +          
Sbjct: 59  -RGANPDLKDRTGF-AVIHDAARAGFLDTLQTLLE-----------FQAD---------- 95

Query: 325 VGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                            ++  D EGN PLH LAA
Sbjct: 96  -----------------VNIEDNEGNLPLH-LAA 111

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 56.6 bits (138), Expect = 6e-10
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           VN +   G+ PLHLAAK GH  +V  L++                          N++ +
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVK------HTASNVGHR-----------NHKGD 138

Query: 126 TALHEAVSQGNVDVVKIL 143
           TA   A   G  +VV ++
Sbjct: 139 TACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIE 94
           V  +   GDT   LA  +G  E+V ++  
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 96.4 bits (241), Expect = 8e-24
 Identities = 31/210 (14%), Positives = 54/210 (25%), Gaps = 46/210 (21%)

Query: 68  QVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
           +   +G     +  K GH                         +        V +E  T 
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYI-------------AAD--------VVSEYETP 47

Query: 128 LHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASF 187
              A  + +   +  L  +      + +  G+T L   A   +                 
Sbjct: 48  WWTAARKADEQALSQLLED--RDVDAVDENGRTALLFVAGLGSD---------------- 89

Query: 188 DMVLALLENSTSVSHEGPN-GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTP 246
             V  L E    + H     G TALH AA      +    + L +    I+  D+ G T 
Sbjct: 90  KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR-PEVV--EALVELGADIEVEDERGLTA 146

Query: 247 IHYAAYYGNYRTVNLLLETDQSASNIADKD 276
           +  A            ++       I  + 
Sbjct: 147 LELAREILKTTPKGNPMQ---FGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 84.9 bits (211), Expect = 1e-19
 Identities = 38/202 (18%), Positives = 62/202 (30%), Gaps = 67/202 (33%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           V ++ +TP   AA+    + +  L+E                      +  V+    TAL
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 80

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSAN------NYGKTPLYMAAEYENRSDMLRGLLENR 182
                 G+   V++L          A+        G T L+MAA Y             R
Sbjct: 81  LFVAGLGSDKCVRLLAE------AGADLDHRDMRGGLTALHMAAGY------------VR 122

Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQY 242
                ++V AL+E    +  E   G TAL  A                  + L       
Sbjct: 123 P----EVVEALVELGADIEVEDERGLTALELAR-----------------EILKTTPKG- 160

Query: 243 GWTPIHYAAYYGNYRTVNLLLE 264
              P+ +    G  + +N+L  
Sbjct: 161 --NPMQFGRRIGLEKVINVLEG 180

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 80.2 bits (199), Expect = 5e-18
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 27/182 (14%)

Query: 154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHA 213
               G     +  +  +                    +     +  V  E    +T    
Sbjct: 10  TAGEGAMEYLIEWKDGHS----------------PSWVPSSYIAADVVSEY---ETPWWT 50

Query: 214 AAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NI 272
           AA ++          L + ++ +   D+ G T + + A  G+ + V LL E    A  + 
Sbjct: 51  AARKAD-EQAL--SQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAE--AGADLDH 104

Query: 273 ADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLL 332
            D    +TALH+AAG      VE ++       E+ D RG   L  A          N +
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPM 163

Query: 333 EN 334
           + 
Sbjct: 164 QF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 63.3 bits (155), Expect = 4e-12
 Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 23/135 (17%)

Query: 230 EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKG 289
           E  K +   T   G          G+  +          A+++  +    T    AA K 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY---IAADVVSEYE--TPWWTAARKA 55

Query: 290 DARTVERIISG---NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDE 344
           D + + +++     +       D  G   L +         +R L E   +      +D 
Sbjct: 56  DEQALSQLLEDRDVDAV-----DENGRTALLFVAGLGSDKCVRLLAEAGAD------LDH 104

Query: 345 GDAE-GNTPLHVLAA 358
            D   G T LH +AA
Sbjct: 105 RDMRGGLTALH-MAA 118

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.6 bits (243), Expect = 1e-23
 Identities = 53/247 (21%), Positives = 88/247 (35%), Gaps = 41/247 (16%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
                +LA      E+   ++                           + +  TALH A 
Sbjct: 7   NIMICNLAYSGKLDELKERILAD-------------KSL-----ATRTDQDSRTALHWAC 48

Query: 133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA 192
           S G+ ++V+ L +         ++ G +PL++AA                     ++V A
Sbjct: 49  SAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGXD----------------EIVKA 91

Query: 193 LLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAY 252
           LL     V+    NG T LH AA ++      +  +L +        D Y  T +H AA 
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148

Query: 253 YGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRG 312
            GN + V++LL    S  NI D +   T LHLA  +      + +++     Y   +   
Sbjct: 149 KGNLKMVHILLFYKAST-NIQDTEGN-TPLHLACDEERVEEAKFLVTQGASIYI-ENKEE 205

Query: 313 CNFLHYA 319
              L  A
Sbjct: 206 KTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 47/235 (20%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
                    T LH A   GH EIV  L++              GV      +   ++   
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQL-------------GVP-----VNDKDDAGW 74

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           + LH A S G  ++VK L  +   +  + N  G TPL+ AA                   
Sbjct: 75  SPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRH-------------- 119

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
             ++ + LLE   +   +     TA+H AA +    +  +  +L   K      D  G T
Sbjct: 120 --EIAVMLLEGGANPDAKDHYDATAMHRAAAKG---NLKMVHILLFYKASTNIQDTEGNT 174

Query: 246 PIHYAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARTVERIIS 299
           P+H A           L+      ++I  ++++  T L +A G      + + ++
Sbjct: 175 PLHLACDEERVEEAKFLVT---QGASIYIENKEEKTPLQVAKGGLG--LILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.5 bits (209), Expect = 5e-19
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 13/185 (7%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           +     + A       +    + +   K+L   TDQ   T +H+A   G+   V  LL  
Sbjct: 6   SNIMICNLAYSGKLD-ELK--ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-- 60

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH 324
                 N  D     + LH+AA  G    V+ ++         V+  GC  LHYA     
Sbjct: 61  QLGVPVNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNR 118

Query: 325 VGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNV 384
                 LLE      +  D  D    T +H  AA    +   ++    +A+ +  + +  
Sbjct: 119 HEIAVMLLEGG----ANPDAKDHYDATAMHRAAAKGNLKMVHIL-LFYKASTNIQDTEGN 173

Query: 385 SVRHV 389
           +  H+
Sbjct: 174 TPLHL 178

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.1 bits (195), Expect = 3e-17
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 29/236 (12%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA 214
                    +A   +                  ++   +L + +  +    + +TALH A
Sbjct: 4   CVSNIMICNLAYSGKLD----------------ELKERILADKSLATRTDQDSRTALHWA 47

Query: 215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD 274
                  +    + L +    + + D  GW+P+H AA  G    V  LL      +++  
Sbjct: 48  CSAGH-TEIV--EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV---KGAHVNA 101

Query: 275 KDRK-MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE 333
            ++   T LH AA K        ++ G        D+     +H A    ++  +  LL 
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 334 NNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHV 389
                 +  +  D EGNTPLH+       E    +  +  A+    NK+  +   V
Sbjct: 161 YK----ASTNIQDTEGNTPLHLACDEERVEEAKFL-VTQGASIYIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 37/161 (22%), Positives = 56/161 (34%), Gaps = 35/161 (21%)

Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           + + L    A +  VN  G TPLH AA     EI  +L+E                    
Sbjct: 88  IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA----------------- 130

Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDM 174
                 ++   TA+H A ++GN+ +V IL           +  G TPL++A + E     
Sbjct: 131 -NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERV--- 185

Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAA 215
                        +    L+    S+  E    KT L  A 
Sbjct: 186 -------------EEAKFLVTQGASIYIENKEEKTPLQVAK 213

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 90.6 bits (226), Expect = 6e-22
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 33/178 (18%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGL 178
                  L  A ++G V+ V+ L     +P    + N+YG+ P+ +            G 
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM---------MG- 55

Query: 179 LENRTSASFDMVLALLENSTSVSHEGPNGKT-ALHAAAMRSFAVDTALPKLLEKKKNLIK 237
                  S  +   LL +    +   P   T  +H AA   F +DT    +L +    + 
Sbjct: 56  -------SARVAELLLLHGAEPNCADPATLTRPVHDAAREGF-LDTL--VVLHRAGARLD 105

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
             D +G  P+  A   G+      L       +             + A +G +   +
Sbjct: 106 VRDAWGRLPVDLAEELGHRDVARYLR------AAAGGTRGS-NHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 37/169 (21%), Positives = 54/169 (31%), Gaps = 25/169 (14%)

Query: 194 LENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYY 253
           +E +   S E       L  AA R   V+    + L +        + YG  PI      
Sbjct: 1   MEPAAGSSME--PSADWLATAAARGR-VEEV--RALLEAGANPNAPNSYGRRPIQVMMM- 54

Query: 254 GNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GNPKCYELVDN 310
           G+ R   LLL     A  N AD       +H AA +G   T+  +          ++ D 
Sbjct: 55  GSARVAELLLL--HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL---DVRDA 109

Query: 311 RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEG-DAEGNTPLHVLAA 358
            G   +  A    H            +AR L        G+    + AA
Sbjct: 110 WGRLPVDLAEELGHRD----------VARYLRAAAGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.9 bits (167), Expect = 6e-14
 Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 57/160 (35%)

Query: 68  QVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
             NA    G  P+ +    G   +  +L+               G EP         N  
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLLH-------------GAEP---------NCA 73

Query: 125 N-----TALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
           +       +H+A  +G +D + +L R           + +G+ P+ +A E  +R      
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHR------ 124

Query: 178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMR 217
                     D+   L   +         G       A  
Sbjct: 125 ----------DVARYLRAAAGGT-----RGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.9 bits (115), Expect = 7e-07
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 30/83 (36%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
           +L +    ++ +   G  P+ LA + GH ++ R L   A                     
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA--------------------- 134

Query: 118 RMVNNEKNTALHEAVSQGNVDVV 140
                  +       ++G  D+ 
Sbjct: 135 --GGTRGSNHARIDAAEGPSDIP 155

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 91.6 bits (228), Expect = 1e-21
 Identities = 43/261 (16%), Positives = 75/261 (28%), Gaps = 55/261 (21%)

Query: 68  QVNAK------GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVN 121
                          L  AA  G  E+V+  ++                +         N
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-------------MND-----PSQPN 51

Query: 122 NEKNTALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLL 179
            E  TALH A+   N  +V  L     +     S +++G TPL+ AA   +         
Sbjct: 52  EEGITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDT-------- 100

Query: 180 ENRTSASFDMVLALLENSTSVSHEGPN-GKTALH-AAAMRSFAVDTALPKLLEKKKNLIK 237
                    + +AL+++  ++     + G TA       R    D A    L   +  + 
Sbjct: 101 --------VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCA--TYLADVEQSMG 150

Query: 238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERI 297
             +      +   +    +       E +       D   + T    AA  G    V R 
Sbjct: 151 LMNSGAVYALWDYSA--EFGDELSFREGESVTVLRRDGPEE-TDWWWAALHGQEGYVPRN 207

Query: 298 ISGNPKCYELVDNRGCNFLHY 318
             G    +  V  +     H+
Sbjct: 208 YFG---LFPRVKPQRSKVKHH 225

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 72.3 bits (178), Expect = 9e-15
 Identities = 40/235 (17%), Positives = 63/235 (26%), Gaps = 35/235 (14%)

Query: 158 GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMR 217
               L  AA                     ++V   ++     S     G TALH A   
Sbjct: 21  PLVLLLDAALT----------------GELEVVQQAVKEMNDPSQPNEEGITALHNAICG 64

Query: 218 SFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDR 277
           +          L      +   D +GWTP+H AA   +      L++    A  I     
Sbjct: 65  AN-YSIV--DFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ--HGA-AIFATTL 118

Query: 278 K--MTALHLAAG--KGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE 333
               TA        +G A     +                +   YA+  +       L  
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQS-----MGLMNSGAVYALWDYSAEFGDELSF 173

Query: 334 NNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRH 388
                   +   D    T     AA+  +E    + R+    +  V  Q   V+H
Sbjct: 174 RE-GESVTVLRRDGPEETDWW-WAALHGQE--GYVPRNYFGLFPRVKPQRSKVKH 224

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 91.4 bits (227), Expect = 3e-21
 Identities = 45/282 (15%), Positives = 78/282 (27%), Gaps = 68/282 (24%)

Query: 6   FKAASAGNSEPFKDMERDVIERLLTAKAK------------NTILHI-NIISSERENVST 52
           F   S G+ +  +     ++  LLT K +             T L    +  S   N + 
Sbjct: 10  FDIVSRGSPDGLEG----LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 53  KFVEEILEKCPALLLQVNA-------KGDTPLHLAAKFGHFEIVRVLIER-AKLAQRGDE 104
             + +I EK   +   +N+       +G T LH+A +      V +L+E+ A +      
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-----H 120

Query: 105 EPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGY--PYSANNYGKTPL 162
               G     +            L  A       +V  LT            ++ G T L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

Query: 163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVD 222
           +      + +      +         M   LL                   A        
Sbjct: 181 HALVAIADNTRENTKFV-------TKMYDLLLI----------------KCAK------- 210

Query: 223 TALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
                 L    NL    +  G +P+  AA  G       ++ 
Sbjct: 211 ------LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 81.0 bits (200), Expect = 1e-17
 Identities = 46/280 (16%), Positives = 78/280 (27%), Gaps = 93/280 (33%)

Query: 70  NAKGDTPLHLAA---KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNT 126
            + G T L  A      G  + + +L++ A+   +     E    P     R V     T
Sbjct: 43  PSTGKTCLPKALLNLSAGRNDTIPILLDIAE---KTGNMREFINSP----FRDVYYRGQT 95

Query: 127 ALHEAVSQGNVDVVKIL-------------TREDPGYPYSANNYGKTPLYMAAEYENRSD 173
           ALH A+ +     V++L                 P        +G+ PL +AA       
Sbjct: 96  ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP-- 153

Query: 174 MLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK 233
                          +V  L EN    +                                
Sbjct: 154 --------------HIVHYLTENGHKQAD------------------------------- 168

Query: 234 NLIKETDQYGWTPIHYAAYYGN---------YRTVNLLLE------TDQSASNIADKDRK 278
             ++  D  G T +H      +          +  +LLL        D +   + + D  
Sbjct: 169 --LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226

Query: 279 MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHY 318
            + L +AA  G     + II       E+ D    +  H+
Sbjct: 227 -SPLMMAAKTGKIGIFQHIIR-----REIADAAAHHHHHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 49/261 (18%), Positives = 81/261 (31%), Gaps = 62/261 (23%)

Query: 126 TALHEAVSQGNV----DVVKIL-------TREDPGYPYSANNYGKTPLYMAAE--YENRS 172
             L + VS+G+      ++  L       T E+    +   + GKT L  A       R+
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE----FREPSTGKTCLPKALLNLSAGRN 62

Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL--- 229
           D +  LL+    A     +    NS         G+TALH A  R         +LL   
Sbjct: 63  DTIPILLDI---AEKTGNMREFINS-PFRDVYYRGQTALHIAIERR---CKHYVELLVEK 115

Query: 230 -----EKKKNL------IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK 278
                 + +              +G  P+  AA       V+ L E     +++  +D +
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175

Query: 279 -MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPL 337
             T LH      D                  + R        M    + +   L  +  L
Sbjct: 176 GNTVLHALVAIAD------------------NTRENTKFVTKMYDLLLIKCAKLFPDTNL 217

Query: 338 ARSLIDEGDAEGNTPLHVLAA 358
                   + +G +PL  +AA
Sbjct: 218 E----ALLNNDGLSPLM-MAA 233

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 38/233 (16%), Positives = 58/233 (24%), Gaps = 74/233 (31%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSV----SHEGPNGKTA 210
             + +  L+         D L GLL             LL +   +      E   GKT 
Sbjct: 2   KVFNRPILFDIVS-RGSPDGLEGLLSF-----------LLTHKKRLTDEEFREPSTGKTC 49

Query: 211 LHAAAMRSFAVDTALPKLL-----------EKKKNLIKETDQYGWTPIHYAAYYGNYRTV 259
           L  A +   A       +L           E   +  ++    G T +H A        V
Sbjct: 50  LPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV 109

Query: 260 NLLL-------ETDQSASNIADKDRKM-----TALHLAAGKGDARTVERIISGNPKCYEL 307
            LL+          +        +          L LAA       V  +          
Sbjct: 110 ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE-------- 161

Query: 308 VDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVR 360
                                      N   ++ +   D+ GNT LH L A+ 
Sbjct: 162 ---------------------------NGHKQADLRRQDSRGNTVLHALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 35  NTILHINIISSERENVSTKF----VEEILEKC------PALLLQVNAKGDTPLHLAAKFG 84
           NT+LH  +  ++    +TKF     + +L KC        L   +N  G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

Query: 85  HFEIVRVLIER 95
              I + +I R
Sbjct: 237 KIGIFQHIIRR 247

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 87.8 bits (218), Expect = 1e-20
 Identities = 24/206 (11%), Positives = 59/206 (28%), Gaps = 43/206 (20%)

Query: 70  NAKGD-TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           NA  +   +  AA  G +E    L E+      G E+               +  K+  L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEK------GYEDK-------------ESVLKSNIL 42

Query: 129 HEAVS----QGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR 182
           ++ +     +    +   L  +  D     S    G T  +   +               
Sbjct: 43  YDVLRNNNDEARYKISMFLINKGADIK---SRTKEGTTLFFPLFQGGGND---------- 89

Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPK----LLEKKKNLIKE 238
            + + ++    LE    ++      K  +       F  +  +      +  +    +  
Sbjct: 90  ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 239 TDQYGWTPIHYAAYYGNYRTVNLLLE 264
            D++G T + +         + ++ +
Sbjct: 150 KDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 83.6 bits (207), Expect = 4e-19
 Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 22/185 (11%)

Query: 123 EKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR 182
            +   +  A   G  +    L  +  GY    +      LY                 N 
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEK--GYEDKESVLKSNILYDVLRN------------NN 50

Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAAM---RSFAVDTALPKLLEKKKNLIKET 239
             A + + + L+     +      G T                T L K+  +K   I   
Sbjct: 51  DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL 110

Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLET----DQSASNIADKDRK-MTALHLAAGKGDARTV 294
            +     +    +        ++        QS   +  KD+  +TAL           +
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 295 ERIIS 299
           + +  
Sbjct: 171 KMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 12/126 (9%), Positives = 29/126 (23%), Gaps = 20/126 (15%)

Query: 243 GWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK---MTALHLAAGKGDARTVERIIS 299
            +  +  AA  G Y     L E  +   +     +       L     +   +    +I+
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFE--KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 300 G--NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEG------DAEGNT 351
              + K        G                 ++     L +  +++G            
Sbjct: 64  KGADIKS---RTKEGTTLFFPLFQGGG----NDITGTTELCKIFLEKGADITALYKPYKI 116

Query: 352 PLHVLA 357
            +    
Sbjct: 117 VVFKNI 122

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 25/197 (12%), Positives = 53/197 (26%), Gaps = 52/197 (26%)

Query: 6   FKAASAGNSEPFKDMERDVIERLLTAKA-------KNTILHINIISSERENVSTKFVEEI 58
             AA  G  E            L            K+ IL+  + ++  E        +I
Sbjct: 11  SAAAMLGTYE--------DFLELFEKGYEDKESVLKSNILYDVLRNNNDEAR-----YKI 57

Query: 59  LEKCPALLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRG-DEEPESGV 110
                  L+     + ++   G T      + G  +I           ++G D       
Sbjct: 58  SM----FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD------- 106

Query: 111 EPFRQMIRMVNNEKNTALHEAVSQGNVD------VVKILTREDPGYPYSANNYGKTPLYM 164
                 I  +       + + +    VD      + K++  +        + +G T L  
Sbjct: 107 ------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

Query: 165 AAEYENRSDMLRGLLEN 181
                 +   L+ + + 
Sbjct: 161 VKRC-QKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 19/169 (11%), Positives = 40/169 (23%), Gaps = 27/169 (15%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEK--KKNLIKETDQYGWTPIHYAAYYGNYRTVNLLL 263
           +    + AAAM     D    +L EK  +           +  +        Y+    L+
Sbjct: 5   SEYRTVSAAAMLGTYEDFL--ELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 264 ETDQSAS-NIADKDRKMTALHLAAGKG------DARTVERIISG----NPKCYELVDNRG 312
             ++ A      K+   T        G           +  +                  
Sbjct: 63  --NKGADIKSRTKE-GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL-----YKPY 114

Query: 313 CNFLHYAMVSFHVGQLRNLLENNPLARSL---IDEGDAEGNTPLHVLAA 358
              +   + ++ V +   +     +       +   D  G T L     
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE-FVK 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 14/92 (15%)

Query: 273 ADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLL 332
           ++   +   +  AA  G       +        +       N L+  +      +  N  
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVL------RNNNDE 52

Query: 333 ENNPLARSLIDEG------DAEGNTPLHVLAA 358
               ++  LI++G        EG T    L  
Sbjct: 53  ARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 90.8 bits (225), Expect = 2e-20
 Identities = 39/287 (13%), Positives = 69/287 (24%), Gaps = 68/287 (23%)

Query: 57  EILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQM 116
            +L     ++  + A+      LAA+ GH  ++  L E         E            
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-----LAPTEI----------- 155

Query: 117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPLYMAAEYENRSDML 175
           + M+  E   A   A   G++ V+  L    P    +            AA      +++
Sbjct: 156 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215

Query: 176 RGLLENRTS------------------------------------ASFDMVLALLENSTS 199
             LL+                                        ++ D V  L+     
Sbjct: 216 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK--- 272

Query: 200 VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL-----IKETDQYGWTPIHYAAYYG 254
              E   G   L     R+  V     + L     +                +  A   G
Sbjct: 273 --SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330

Query: 255 NYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGN 301
           N     LLL     +     K       ++    G        +  +
Sbjct: 331 NQGACALLLS--IPSVLALTKA---NNYYINETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 40/340 (11%), Positives = 92/340 (27%), Gaps = 71/340 (20%)

Query: 4   NFFKAASAGNSEPFKDM-ERDVIERLLTAKA--KNTILHINIISSERENVSTKFVEEILE 60
           N F+   + N      +  ++ I   L      +     + +  +     + +   +  +
Sbjct: 28  NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHK 87

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHF---EIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
           K          K +    +AA  G     + + +L+   ++                  +
Sbjct: 88  K--------GIKSEVICFVAAITGCSSALDTLCLLLTSDEI------------------V 121

Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS-ANNYGKTPLYMAAEYENRSDMLR 176
           +++  E   A   A   G++ V+  L    P    +           +AAE      +L 
Sbjct: 122 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN-GHLHVLN 180

Query: 177 GLLEN-----------------RTSAS----FDMVLALLENSTSVSHEGPNGKTALHAAA 215
            L E                  R +A      +++  LL+    +++   +         
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 240

Query: 216 MRSFAVDTALPKLLEKKKNLI----------KETDQYGWTPIHYAAYYGNYRTVNLL--L 263
               A      K +     L           K     G+  +       +   ++ +  L
Sbjct: 241 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 300

Query: 264 ETDQSASNIADKDRK----MTALHLAAGKGDARTVERIIS 299
            +      +A            L LA   G+      ++S
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 26/218 (11%), Positives = 62/218 (28%), Gaps = 30/218 (13%)

Query: 105 EPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYM 164
           +P+  + P+     +  +  +      ++    + + I             N  +    +
Sbjct: 15  DPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLP-------GTKNMEQVRQLL 67

Query: 165 AAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTA 224
              Y + +   + L  +                     +G   +     AA+   +    
Sbjct: 68  CLYYAHYNRNAKQLWSD------------------AHKKGIKSEVICFVAAITGCSSALD 109

Query: 225 LPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE--TDQSASNIADKDRKMTAL 282
              LL     ++K      +     AA  G+   +N L E    +  + I  ++    A 
Sbjct: 110 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY--HAF 167

Query: 283 HLAAGKGDARTVERIIS-GNPKCYELVDNRGCNFLHYA 319
            LAA  G    + R+      +   ++         +A
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 79.3 bits (197), Expect = 3e-18
 Identities = 52/194 (26%), Positives = 75/194 (38%), Gaps = 75/194 (38%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G TPLHLAA+ GH E+V++L+E              G +     +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-------------GAD-----VNAKDKNGRTPLHLAA 43

Query: 133 SQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV 190
             G+++VVK+L     D     + +  G+TPL++AA          G LE        +V
Sbjct: 44  RNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARN--------GHLE--------VV 84

Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA 250
             LLE        G +                             +   D+ G TP+H A
Sbjct: 85  KLLLEA-------GAD-----------------------------VNAKDKNGRTPLHLA 108

Query: 251 AYYGNYRTVNLLLE 264
           A  G+   V LLLE
Sbjct: 109 ARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.5 bits (182), Expect = 4e-16
 Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 23/143 (16%)

Query: 158 GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMR 217
           G+TPL++AA   +                 ++V  LLE    V+ +  NG+T LH AA  
Sbjct: 2   GRTPLHLAARNGH----------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARN 45

Query: 218 SFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKD 276
              ++    KLL +    +   D+ G TP+H AA  G+   V LLLE    A  N  DK+
Sbjct: 46  GH-LEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKN 100

Query: 277 RKMTALHLAAGKGDARTVERIIS 299
            + T LHLAA  G    V+ ++ 
Sbjct: 101 GR-TPLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.9 bits (170), Expect = 1e-14
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 25/117 (21%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           VNAK   G TPLHLAA+ GH E+V++L+E              G +     +   +    
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-------------GAD-----VNAKDKNGR 69

Query: 126 TALHEAVSQGNVDVVKILTREDPG-YPYSANNYGKTPLYMAAEYENRSDMLRGLLEN 181
           T LH A   G+++VVK+L   + G    + +  G+TPL++AA      ++++ LLE 
Sbjct: 70  TPLHLAARNGHLEVVKLLL--EAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.4 bits (166), Expect = 5e-14
 Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           NG+T LH AA     ++    KLL +    +   D+ G TP+H AA  G+   V LLLE 
Sbjct: 1   NGRTPLHLAARNGH-LEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE- 56

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLHYA 319
              A  N  DK+ + T LHLAA  G    V+ ++  G   N K     D  G   LH A
Sbjct: 57  -AGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAK-----DKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 22/123 (17%)

Query: 243 GWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIISG- 300
           G TP+H AA  G+   V LLLE    A  N  DK+ + T LHLAA  G    V+ ++   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG 58

Query: 301 ---NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHV 355
              N K     D  G   LH A  + H+  ++ LLE   +      ++  D  G TPLH 
Sbjct: 59  ADVNAK-----DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLH- 106

Query: 356 LAA 358
           LAA
Sbjct: 107 LAA 109

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 78.6 bits (195), Expect = 5e-18
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 39/149 (26%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           + +  D     A K G  + V+  + +             G +     +          L
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAK-------------GED-----VNRTLEGGRKPL 44

Query: 129 HEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
           H A   G +++++ L  +  D     + + +  TPL  A           G +       
Sbjct: 45  HYAADCGQLEILEFLLLKGADIN---APDKHHITPLLSAVYE--------GHVS------ 87

Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAA 215
              V  LL      + +GP+G TA  A  
Sbjct: 88  --CVKLLLSKGADKTVKGPDGLTAFEATD 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.5 bits (187), Expect = 7e-17
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 29/145 (20%)

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA 214
            +        A +  +                 D V   +     V+     G+  LH A
Sbjct: 4   GSMCDKEFMWALKNGD----------------LDEVKDYVAKGEDVNRTLEGGRKPLHYA 47

Query: 215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD 274
           A     ++    + L  K   I   D++  TP+  A Y G+   V LLL      S  AD
Sbjct: 48  ADCGQ-LEIL--EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL------SKGAD 98

Query: 275 KDRK----MTALHLAAGKGDARTVE 295
           K  K    +TA      +     ++
Sbjct: 99  KTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 24/122 (19%), Positives = 36/122 (29%), Gaps = 18/122 (14%)

Query: 204 GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLL 263
           G         A       D    K    K   +  T + G  P+HYAA  G    +  LL
Sbjct: 4   GSMCDKEFMWALKNG---DLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 264 ETDQSASNIADKDRK----MTALHLAAGKGDARTVERIIS--GNPKCYELVDNRGCNFLH 317
                    AD +      +T L  A  +G    V+ ++S   +     +    G     
Sbjct: 61  ------LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK---TVKGPDGLTAFE 111

Query: 318 YA 319
             
Sbjct: 112 AT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.2 bits (129), Expect = 5e-09
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 21/76 (27%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           +NA      TPL  A   GH   V++L+ +             G +       +   +  
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSK-------------GAD-----KTVKGPDGL 107

Query: 126 TALHEAVSQGNVDVVK 141
           TA     +Q    +++
Sbjct: 108 TAFEATDNQAIKALLQ 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.6 bits (195), Expect = 6e-18
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 23/148 (15%)

Query: 154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHA 213
            N+ G+T L++A+   +                   V  LL+N +  + +   G T LH 
Sbjct: 6   TNHRGETLLHIASIKGD----------------IPSVEYLLQNGSDPNVKDHAGWTPLHE 49

Query: 214 AAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NI 272
           A      +     +LL + K L+  T     +P+H AA  G+   V LLL     AS N 
Sbjct: 50  ACNHGH-LKVV--ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS--YGASRNA 104

Query: 273 ADKDRKMTALHLAAGKGDARTVERIISG 300
            +       +     +     +      
Sbjct: 105 VNIFGL-RPVDYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.1 bits (191), Expect = 2e-17
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 81/200 (40%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
           N +G+T LH+A+  G    V  L++              G +       + ++   T LH
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQN-------------GSD-----PNVKDHAGWTPLH 48

Query: 130 EAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGLLENRTS 184
           EA + G++ VV++L +        A          +PL+ AA+  +              
Sbjct: 49  EACNHGHLKVVELLLQHK------ALVNTTGYQNDSPLHDAAKNGH-------------- 88

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW 244
              D+V  LL         G +                                 + +G 
Sbjct: 89  --VDIVKLLLSY-------GAS-----------------------------RNAVNIFGL 110

Query: 245 TPIHYAAYYGNYRTVNLLLE 264
            P+ Y         + L  +
Sbjct: 111 RPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.8 bits (172), Expect = 9e-15
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 12/117 (10%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
            G+T LH A+++   + +   + L +  +     D  GWTP+H A  +G+ + V LLL+ 
Sbjct: 9   RGETLLHIASIKGD-IPSV--EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ- 64

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS--GNPKCYELVDNRGCNFLHYA 319
              A  N        + LH AA  G    V+ ++S   +      V+  G   + Y 
Sbjct: 65  -HKALVNTTGYQN-DSPLHDAAKNGHVDIVKLLLSYGASR---NAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.8 bits (159), Expect = 6e-13
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 17/124 (13%)

Query: 237 KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVE 295
             T+  G T +H A+  G+  +V  LL+    +  N+ D     T LH A   G  + VE
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGW-TPLHEACNHGHLKVVE 60

Query: 296 RIISG----NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNT 351
            ++      N         +  + LH A  + HV  ++ LL     A    +  +  G  
Sbjct: 61  LLLQHKALVNTT-----GYQNDSPLHDAAKNGHVDIVKLLLSYG--AS--RNAVNIFGLR 111

Query: 352 PLHV 355
           P+  
Sbjct: 112 PVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 60.1 bits (147), Expect = 2e-11
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 25/86 (29%)

Query: 65  LLLQ----VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
           LLLQ    VN      D+PLH AAK GH +IV++L+               G        
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-------------GASRNAV-- 105

Query: 118 RMVNNEKNTALHEAVSQGNVDVVKIL 143
              N      +     +    ++ + 
Sbjct: 106 ---NIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 271 NIADKDRKMTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLHYAMVSFHVG 326
           +     R  T LH+A+ KGD  +VE ++  G   N K     D+ G   LH A    H+ 
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-----DHAGWTPLHEACNHGHLK 57

Query: 327 QLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
            +  LL++     +L++    + ++PLH  AA
Sbjct: 58  VVELLLQHK----ALVNTTGYQNDSPLH-DAA 84

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 3/31 (9%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERA 96
            NA    G  P+          ++ +  +  
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.9 bits (193), Expect = 1e-17
 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 26/151 (17%)

Query: 117 IRMVNNEKNTALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDM 174
           I M+    +  L  A ++G V+ V+ L     DP    + N +G+ P+ +          
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMM-------- 53

Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKT-ALHAAAMRSFAVDTALPKLLEKKK 233
             G        S  +   LL +    +   P   T  +H AA   F +DT    +L +  
Sbjct: 54  -MG--------SAQVAELLLLHGAEPNCADPATLTRPVHDAAREGF-LDTL--VVLHRAG 101

Query: 234 NLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
             +   D +G  P+  A   G+      L  
Sbjct: 102 ARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.9 bits (188), Expect = 6e-17
 Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 25/148 (16%)

Query: 154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHA 213
                   L  AA               +     + V  LLE     +     G+  +  
Sbjct: 8   LGGSSDAGLATAAAR------------GQV----ETVRQLLEAGADPNALNRFGRRPIQV 51

Query: 214 AAMRSFAVDTALPKLLEKKKNLIKETDQYGWT-PIHYAAYYGNYRTVNLLLETDQSAS-N 271
             M S  V   L  LL          D    T P+H AA  G   T+ +L      A  +
Sbjct: 52  MMMGSAQV-AEL--LLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHR--AGARLD 105

Query: 272 IADKDRKMTALHLAAGKGDARTVERIIS 299
           + D       + LA  +G       + +
Sbjct: 106 VCDAW-GRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 1e-15
 Identities = 26/153 (16%), Positives = 44/153 (28%), Gaps = 44/153 (28%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           ++      D  L  AA  G  E VR L+E              G +        +N    
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEA-------------GAD-----PNALNRFGR 46

Query: 126 TALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKT-PLYMAAEYENRSDMLRGLLENR 182
             +      G+  V ++L     +P     A+    T P++ AA          G     
Sbjct: 47  RPIQVM-MMGSAQVAELLLLHGAEPN---CADPATLTRPVHDAARE--------G----- 89

Query: 183 TSASFDMVLALLENSTSVSHEGPNGKTALHAAA 215
                D ++ L      +      G+  +  A 
Sbjct: 90  ---FLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 66.7 bits (164), Expect = 1e-13
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 12/117 (10%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           +    L  AA R   V+T   + L +        +++G  PI      G+ +   LLL  
Sbjct: 11  SSDAGLATAAARGQ-VETV--RQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLL- 65

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIISG--NPKCYELVDNRGCNFLHYA 319
              A  N AD       +H AA +G   T+  +          ++ D  G   +  A
Sbjct: 66  -HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL---DVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 65.5 bits (161), Expect = 3e-13
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 37/124 (29%)

Query: 68  QVNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEK 124
             NA    G  P+ +    G  ++  +L+               G EP         N  
Sbjct: 37  DPNALNRFGRRPIQVMMM-GSAQVAELLLLH-------------GAEP---------NCA 73

Query: 125 N-----TALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRG 177
           +       +H+A  +G +D + +L R           + +G+ P+ +A E     D+ R 
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPVDLAEEQ-GHRDIARY 129

Query: 178 LLEN 181
           L   
Sbjct: 130 LHAA 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.7 bits (185), Expect = 2e-16
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 30/149 (20%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDML 175
            ++    L EA   G  D V+IL          A+      YG TPLY+A  + +     
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMA------NGADVNAKDEYGLTPLYLATAHGHL---- 60

Query: 176 RGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL 235
                       ++V  LL+N   V+     G T LH AA     ++ A  ++L K    
Sbjct: 61  ------------EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH-LEIA--EVLLKHGAD 105

Query: 236 IKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
           +   D++G T    +   GN     +L +
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 70.5 bits (174), Expect = 5e-15
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 23/148 (15%)

Query: 153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH 212
              +     L  AA                     D V  L+ N   V+ +   G T L+
Sbjct: 9   HHGSDLGKKLLEAARAGQD----------------DEVRILMANGADVNAKDEYGLTPLY 52

Query: 213 AAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-N 271
            A      ++    ++L K    +   D  G+TP+H AA+ G+     +LL+    A  N
Sbjct: 53  LATAHGH-LEIV--EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK--HGADVN 107

Query: 272 IADKDRKMTALHLAAGKGDARTVERIIS 299
             DK  K TA  ++ G G+    E +  
Sbjct: 108 AQDKFGK-TAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.6 bits (169), Expect = 2e-14
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 202 HEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNL 261
           H G +    L  AA      D    ++L      +   D+YG TP++ A  +G+   V +
Sbjct: 9   HHGSDLGKKLLEAARAGQ-DDEV--RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV 65

Query: 262 LLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFL 316
           LL+    A  N  D     T LHLAA  G     E ++  G   N +     D  G    
Sbjct: 66  LLK--NGADVNAVDAIGF-TPLHLAAFIGHLEIAEVLLKHGADVNAQ-----DKFGKTAF 117

Query: 317 HYA 319
             +
Sbjct: 118 DIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 66.3 bits (163), Expect = 2e-13
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 45/151 (29%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALH 129
            +     L  AA+ G  + VR+L+               G +     +   +    T L+
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMAN-------------GAD-----VNAKDEYGLTPLY 52

Query: 130 EAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGLLENRTS 184
            A + G++++V++L +        A+       G TPL++AA   +              
Sbjct: 53  LATAHGHLEIVEVLLK------NGADVNAVDAIGFTPLHLAAFIGHL------------- 93

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAA 215
              ++   LL++   V+ +   GKTA   + 
Sbjct: 94  ---EIAEVLLKHGADVNAQDKFGKTAFDISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.3 bits (158), Expect = 7e-13
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 33/120 (27%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           VNAK   G TPL+LA   GH EIV VL++              G +     +  V+    
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKN-------------GAD-----VNAVDAIGF 81

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSAN-----NYGKTPLYMAAEYENRSDMLRGLLE 180
           T LH A   G++++ ++L +      + A+      +GKT   ++       D+   L +
Sbjct: 82  TPLHLAAFIGHLEIAEVLLK------HGADVNAQDKFGKTAFDISIGN-GNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.4 bits (114), Expect = 6e-07
 Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 43/117 (36%)

Query: 243 GWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGN 301
               +  AA  G    V +L+     A  N  D+    T L+LA   G    VE ++   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGL-TPLYLATAHGHLEIVEVLLK-- 68

Query: 302 PKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                     G +                           ++  DA G TPLH LAA
Sbjct: 69  ---------NGAD---------------------------VNAVDAIGFTPLH-LAA 88

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.1 bits (173), Expect = 5e-15
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           +G T LH AA      +    K L  K   +    + G TP+H AA  G+   V LLL  
Sbjct: 8   DGNTPLHNAAKNGH-AEEV--KKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA- 63

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS-G---NPKCYELVDNRGCNFLHY 318
            + A  N   KD   T  HLA   G    V+ + + G   N +          +  H+
Sbjct: 64  -KGADVNARSKDGN-TPEHLAKKNGHHEIVKLLDAKGADVNAR-----SWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 66.6 bits (164), Expect = 7e-14
 Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 40/147 (27%)

Query: 69  VNAK-GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
             +K G+TPLH AAK GH E V+ L+ +             G +     +   + + NT 
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSK-------------GAD-----VNARSKDGNTP 45

Query: 128 LHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           LH A   G+ ++VK+L  +  D     + +  G TP ++A +                  
Sbjct: 46  LHLAAKNGHAEIVKLLLAKGADVN---ARSKDGNTPEHLAKKN----------------G 86

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALH 212
             ++V  L      V+          H
Sbjct: 87  HHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 65.9 bits (162), Expect = 1e-13
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 21/122 (17%)

Query: 240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERII 298
            + G TP+H AA  G+   V  LL   + A  N   KD   T LHLAA  G A  V+ ++
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGN-TPLHLAAKNGHAEIVKLLL 62

Query: 299 SG----NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTP 352
           +     N +        G    H A  + H   ++ L     +      ++      +  
Sbjct: 63  AKGADVNAR-----SKDGNTPEHLAKKNGHHEIVKLLDAKGAD------VNARSWGSSHH 111

Query: 353 LH 354
            H
Sbjct: 112 HH 113

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 24/111 (21%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           G TPLHLAA+ GH E+V++L+E              G +     +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-------------GAD-----VNAKDKNGRTPLHLAA 43

Query: 133 SQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN 181
             G+++VVK+L     D     + +  G+TPL++AA      ++++ LLE 
Sbjct: 44  RNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARN-GHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.9 bits (157), Expect = 4e-13
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           NG+T LH AA     ++    KLL +    +   D+ G TP+H AA  G+   V LLLE 
Sbjct: 1   NGRTPLHLAARNGH-LEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE- 56

Query: 266 DQSAS-NIADKDRKMTALHLAAGKGDARTVERIIS 299
              A  N  DK+ + T LHLAA  G    V+ ++ 
Sbjct: 57  -AGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.5 bits (143), Expect = 3e-11
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 21/78 (26%)

Query: 69  VNAK---GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN 125
           VNAK   G TPLHLAA+ GH E+V++L+E              G +     +   +    
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-------------GAD-----VNAKDKNGR 69

Query: 126 TALHEAVSQGNVDVVKIL 143
           T LH A   G+++VVK+L
Sbjct: 70  TPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.5 bits (130), Expect = 2e-09
 Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 43/117 (36%)

Query: 243 GWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVERIISGN 301
           G TP+H AA  G+   V LLLE    A  N  DK+ + T LHLAA  G    V+ ++   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLE-- 56

Query: 302 PKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA 358
                     G +                           ++  D  G TPLH LAA
Sbjct: 57  ---------AGAD---------------------------VNAKDKNGRTPLH-LAA 76

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.0 bits (108), Expect = 2e-06
 Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 3/29 (10%)

Query: 69 VNAK---GDTPLHLAAKFGHFEIVRVLIE 94
          VNAK   G TPLHLAA+ GH E+V++L+E
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 23/106 (21%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTAL 128
           + +     L  AA+ G  + VR+L+               G +     +   +   +T L
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMAN-------------GAD-----VAAKDKNGSTPL 61

Query: 129 HEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRS 172
           H A   G+++VVK+L     D     + + +GKT   ++ +  N  
Sbjct: 62  HLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNED 104

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.0 bits (141), Expect = 8e-11
 Identities = 31/140 (22%), Positives = 44/140 (31%), Gaps = 42/140 (30%)

Query: 80  AAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDV 139
            +   H      L+ R             G          + ++    L EA   G  D 
Sbjct: 1   GSSHHHHHHSSGLVPR-------------GSH--------MGSDLGKKLLEAARAGQDDE 39

Query: 140 VKILTRE--DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENS 197
           V+IL     D     + +  G TPL++AA          G LE        +V  LLE  
Sbjct: 40  VRILMANGADVA---AKDKNGSTPLHLAARN--------GHLE--------VVKLLLEAG 80

Query: 198 TSVSHEGPNGKTALHAAAMR 217
             V  +   GKTA   +   
Sbjct: 81  ADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
           +    L  AA      D    ++L      +   D+ G TP+H AA  G+   V LLLE 
Sbjct: 23  DLGKKLLEAARAGQ-DDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE- 78

Query: 266 DQSASNIADKDRKMTALHLAAGKGDARTVE 295
              A   A      TA  ++   G+    E
Sbjct: 79  -AGADVXAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 26/132 (19%), Positives = 39/132 (29%), Gaps = 23/132 (17%)

Query: 131 AVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV 190
             S  +      L            +     L  AA                     D V
Sbjct: 1   GSSHHHHHHSSGLVPRGS----HMGSDLGKKLLEAARA----------------GQDDEV 40

Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA 250
             L+ N   V+ +  NG T LH AA     ++    KLL +    +   D++G T    +
Sbjct: 41  RILMANGADVAAKDKNGSTPLHLAARNGH-LEVV--KLLLEAGADVXAQDKFGKTAFDIS 97

Query: 251 AYYGNYRTVNLL 262
              GN     +L
Sbjct: 98  IDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 24/115 (20%)

Query: 250 AAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARTVERIISG----NPKC 304
            + + ++   + L+         +         L  AA  G    V  +++       K 
Sbjct: 1   GSSHHHHHHSSGLV------PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK- 53

Query: 305 YELVDNRGCNFLHYAMVSFHVGQLRNLLEN--NPLARSLIDEGDAEGNTPLHVLA 357
               D  G   LH A  + H+  ++ LLE   +      +   D  G T   +  
Sbjct: 54  ----DKNGSTPLHLAARNGHLEVVKLLLEAGAD------VXAQDKFGKTAFDISI 98

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 201 SHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVN 260
           ++     +TALH A          +   L +    + +    G T +HY     N   + 
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222

Query: 261 LLLETDQSASNIADKDR-KMTALHLAAGKGDARTVERII 298
           LLL   +  ++I   +    T L +A         E + 
Sbjct: 223 LLL---RGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 35  NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
            T LH+ + S +R ++    + + L +    L +   KG T LH      + E +++L+ 
Sbjct: 170 ETALHLAVRSVDRTSLH---IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL- 225

Query: 95  RAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKIL 143
                +                I + N    T L  A    +    ++L
Sbjct: 226 -----RGK------------ASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 16/107 (14%)

Query: 158 GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMR 217
            +T L++A    +R+                +V  L++NS ++  +   G TALH   + 
Sbjct: 169 DETALHLAVRSVDRTS-------------LHIVDFLVQNSGNLDKQTGKGSTALHYCCL- 214

Query: 218 SFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
               +    KLL + K  I+  ++ G TP+  A    +     LL +
Sbjct: 215 --TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 20/116 (17%)

Query: 72  KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
             +T LHLA +      + ++     L Q                +     + +TALH  
Sbjct: 168 PDETALHLAVRSVDRTSLHIV---DFLVQNSGN------------LDKQTGKGSTALHYC 212

Query: 132 VSQGNVDVVKILTREDPGYPYSA-NNYGKTPLYMAAEYENRS--DMLRGLLENRTS 184
               N + +K+L R          N  G+TPL +A   ++    ++L   L  R +
Sbjct: 213 CLTDNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 280 TALHLAAGKGDARTVERI--ISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPL 337
           TALHLA    D  ++  +  +  N    +    +G   LHY  ++ +   L+ LL     
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG--- 227

Query: 338 ARSLIDEGDAEGNTPLHV 355
            ++ I+  +  G TPL +
Sbjct: 228 -KASIEIANESGETPLDI 244

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 14/157 (8%)

Query: 166 AEYENR------SDMLRGLLENRTSASFDMVLALLENSTSVSHEGPN------GKTALHA 213
           A+Y         +   + L     +     VL    N        P        +  LH 
Sbjct: 137 AKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHL 196

Query: 214 AAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIA 273
           A   +      L   + +    +      G T +HYAA Y     + LLL   ++     
Sbjct: 197 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTV 255

Query: 274 DKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDN 310
           ++  + TAL +A  K      E +       +    +
Sbjct: 256 NEAGE-TALDIARKKHHKECEELLEQAQAGTFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 25/92 (27%)

Query: 65  LLLQ-------VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMI 117
            ++Q         A G+T LH AA +   + +++L++                   R ++
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG------------------RALV 252

Query: 118 RMVNNEKNTALHEAVSQGNVDVVKILTREDPG 149
             VN    TAL  A  + + +  ++L +   G
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 22/127 (17%)

Query: 62  CPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVN 121
            P       A  +  LHLA K  +   + ++     + Q G              +    
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDF---IIQNGGH------------LDAKA 223

Query: 122 NEKNTALHEAVSQGNVDVVKILTRE--DPGYPYSANNYGKTPLYMAAEYENRS--DMLRG 177
            + NTALH A      D +K+L +     G   + N  G+T L +A +  ++   ++L  
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVG---TVNEAGETALDIARKKHHKECEELLEQ 280

Query: 178 LLENRTS 184
                 +
Sbjct: 281 AQAGTFA 287

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 53/425 (12%), Positives = 114/425 (26%), Gaps = 162/425 (38%)

Query: 17  FKDMERDVIERLLTAKAKNTILH-----------INIISSERENVSTKFVEEILEKCPAL 65
            KD++ D+ + +L+ +  + I+               + S++E +  KFVEE+L      
Sbjct: 35  CKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---- 89

Query: 66  LLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQM----IRMVN 121
                   +    L +     +    ++ R  + QR  +   +  + F +     ++   
Sbjct: 90  --------NYKF-LMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYL 138

Query: 122 NEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN 181
             +  AL E     NV +                  G     +            G    
Sbjct: 139 KLRQ-ALLELRPAKNVLI-----------------DG-----VL-----------GS--- 161

Query: 182 RTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQ 241
                                    GKT +      S+ V   +               +
Sbjct: 162 -------------------------GKTWVALDVCLSYKVQCKMD-------------FK 183

Query: 242 YGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE----RI 297
             W  +       N  +   +LE  Q      D +    + H +  K    +++    R+
Sbjct: 184 IFWLNL------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 298 ISGN--PKCYELVDN-----------RGC------------NFL------HYAMV----S 322
           +       C  ++ N             C            +FL      H ++     +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 323 FHVGQLRNLLENNPLARSL-IDEGD----AEGNTPLHV-LAAVRPKEFHDVMNRSTQANY 376
               ++++L     L + L     D         P  + + A   ++     +     N 
Sbjct: 298 LTPDEVKSL-----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 377 DAVNK 381
           D +  
Sbjct: 353 DKLTT 357

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 59/405 (14%), Positives = 120/405 (29%), Gaps = 93/405 (22%)

Query: 1   MDLNFFKAASAGNSEPFK-DMERDVIERLLTAKA-KNTILHINIISSERENVSTKFVEEI 58
           +D N+   +   ++   +    +  + RLL +K  +N +L   ++     NV      + 
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VL----LNVQNA---KA 258

Query: 59  LE----KCPALL----------LQVNAKGDTPL-HLAAKFGHFEIVRVLIERAK-LAQRG 102
                  C  LL          L         L H +      E+  +L    K L  R 
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRP 315

Query: 103 DEEPES--GVEPF---------RQMI------RMVNNEK-NTALHEAVSQGNVDVVK--- 141
            + P       P          R  +      + VN +K  T +  +++       +   
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 142 ----ILTREDPGYPYS------ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
               +        P         +      + +  +    S + +   E+  S    + L
Sbjct: 376 DRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYL 433

Query: 192 ALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAA 251
            L              + ALH + +  +     +PK  +    +    DQY +    +  
Sbjct: 434 ELKVK--------LENEYALHRSIVDHYN----IPKTFDSDDLIPPYLDQY-F--YSHIG 478

Query: 252 YY----GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGK-----GDARTVERIISGNP 302
           ++     +   + L          +  K R  +    A+G         +  +  I  N 
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 303 KCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDA 347
             YE + N   +FL     +    +  +LL       +L+ E +A
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLR-----IALMAEDEA 578

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 6/161 (3%)

Query: 150 YPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKT 209
            P S  +  + P          + + R      +  +    LA   +     + G +  T
Sbjct: 179 RPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNAT 237

Query: 210 ALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSA 269
            L  A   +  +      LL+   N + + D  G  P+H+A   G+     L L+     
Sbjct: 238 PLIQATAANSLLACEF--LLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294

Query: 270 SNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDN 310
               D + +   L +A    +A  V  +     +  E    
Sbjct: 295 -GARDSEGR-DPLTIAMETANADIVTLLRLAKMREAEAAQG 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-60  Score=429.20  Aligned_cols=353  Identities=24%  Similarity=0.289  Sum_probs=294.4

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA   81 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~   81 (401)
                      .||||.||..|+.++|++|++.|.+....+..|.||||+|  +..|+.+++++|++    .+++++.++..|.||||+|+
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~   88 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAA   88 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHH
Confidence            4899999999999999999999888777788899999999  99999999999998    68899999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 015738           82 KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTP  161 (401)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  161 (401)
                      ..|+.++|++|+++|++++.                  .+..|.||||+|+..|+.+++++|++++... ...+..|.||
T Consensus        89 ~~g~~~~v~~Ll~~ga~~~~------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~  149 (437)
T 1n11_A           89 RIGHTNMVKLLLENNANPNL------------------ATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTP  149 (437)
T ss_dssp             HHTCHHHHHHHHHHTCCTTC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCH
T ss_pred             HCCCHHHHHHHHhCCCCCCC------------------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCH
Confidence            99999999999999998643                  3344444444444444444444444444432 2333444444


Q ss_pred             HHHHHhcCCchhHHHhhhhhc------------------cCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccc
Q 015738          162 LYMAAEYENRSDMLRGLLENR------------------TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT  223 (401)
Q Consensus       162 l~~a~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  223 (401)
                      ||+|+..++ .++++.|++..                  ..++.+++++|++.|++++..+..|.||||+|+..  ++.+
T Consensus       150 L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~  226 (437)
T 1n11_A          150 LHVAAKYGK-VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ--NQVE  226 (437)
T ss_dssp             HHHHHHTTC-HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT--TCHH
T ss_pred             HHHHHHcCC-HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc--CCHH
Confidence            444444322 22222222211                  13588999999999999999999999999999998  8889


Q ss_pred             hHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCC
Q 015738          224 ALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPK  303 (401)
Q Consensus       224 ~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  303 (401)
                      .++.|++.+.. ++..+..|.||||+|+..|+.+++++|++.+++. +..+. .|.||||.|+..|+.+++++|++++.+
T Consensus       227 ~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~  303 (437)
T 1n11_A          227 VARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVM  303 (437)
T ss_dssp             HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCcc
Confidence            99999887654 7888889999999999999999999999999887 44443 789999999999999999999999988


Q ss_pred             CccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccC
Q 015738          304 CYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQN  383 (401)
Q Consensus       304 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  383 (401)
                       ++.++..|+||||+|+..++.+++++|++    .|+++|.+|..|.||||+|+..|+.+++++|++. |++++.+|..|
T Consensus       304 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g  377 (437)
T 1n11_A          304 -VDATTRMGYTPLHVASHYGNIKLVKFLLQ----HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDG  377 (437)
T ss_dssp             -TTCCCSSCCCHHHHHHHSSCSHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSS
T ss_pred             -CCCCCCCCCCHHHHHHHcCcHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCCCCC
Confidence             68899999999999999999999999999    8999999999999999999999999999999976 99999999999


Q ss_pred             cceeeeee
Q 015738          384 VSVRHVFN  391 (401)
Q Consensus       384 ~t~l~~a~  391 (401)
                      +||+++|.
T Consensus       378 ~t~l~~A~  385 (437)
T 1n11_A          378 TTPLAIAK  385 (437)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            99999994

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-60  Score=428.30  Aligned_cols=333  Identities=27%  Similarity=0.280  Sum_probs=290.1

Q ss_pred             HHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccC
Q 015738           23 DVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRG  102 (401)
Q Consensus        23 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  102 (401)
                      .|++....+..|.||||+|  +..|+.+++++|++    .|++++..+..|.||||+||..|+.++|++|+++|++.   
T Consensus         3 ~g~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---   73 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVA--SFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV---   73 (437)
T ss_dssp             ------------CCHHHHH--HHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS---
T ss_pred             CCCCccccCCCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---
Confidence            3556666777899999999  99999999999998    78999999999999999999999999999999999884   


Q ss_pred             CCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhc
Q 015738          103 DEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR  182 (401)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~  182 (401)
                                     +..+..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..++.. +++.+++..
T Consensus        74 ---------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~-~v~~Ll~~~  136 (437)
T 1n11_A           74 ---------------NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVE-TVLALLEKE  136 (437)
T ss_dssp             ---------------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHH-HHHHHHHTT
T ss_pred             ---------------CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHH-HHHHHHhCC
Confidence                           567889999999999999999999999999985 477889999999999876544 444444322


Q ss_pred             ------------------cCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCC
Q 015738          183 ------------------TSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW  244 (401)
Q Consensus       183 ------------------~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~  244 (401)
                                        ..++.+++++|++.|++++..+..|.||||+|+..  ++.+.+++|+..+.. ++..+..|.
T Consensus       137 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~-~~~~~~~g~  213 (437)
T 1n11_A          137 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH--NNLDIVKLLLPRGGS-PHSPAWNGY  213 (437)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT--TCHHHHHHHGGGTCC-SCCCCTTCC
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCC-CCCcCCCCC
Confidence                              24578999999999999999999999999999998  888999988887655 677788899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCC
Q 015738          245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH  324 (401)
Q Consensus       245 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  324 (401)
                      ||||+|+..|+.+++++|++.|++. +..+ ..|.||||.|+..|+.+++++|++.+++ ++.++..|.||||+|+..++
T Consensus       214 t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~  290 (437)
T 1n11_A          214 TPLHIAAKQNQVEVARSLLQYGGSA-NAES-VQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGH  290 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999886 3333 3789999999999999999999999988 68899999999999999999


Q ss_pred             hhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          325 VGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       325 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      .+++++|++    .|++++.++..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|..
T Consensus       291 ~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~  353 (437)
T 1n11_A          291 VPVADVLIK----HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQ  353 (437)
T ss_dssp             HHHHHHHHH----HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHh----CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHH
Confidence            999999999    8999999999999999999999999999999976 99999999999999999943

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5e-48  Score=335.07  Aligned_cols=293  Identities=20%  Similarity=0.159  Sum_probs=259.2

Q ss_pred             hcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccC-CCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCc
Q 015738           32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNA-KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGV  110 (401)
Q Consensus        32 ~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  110 (401)
                      ..|.|+||.|  ++.|+.++|++|++    .|++++.++. .|+||||+||..|+.++|++|+++|+++           
T Consensus        23 ~~~~t~L~~A--v~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-----------   85 (337)
T 4g8k_A           23 VEDNHLLIKA--VQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-----------   85 (337)
T ss_dssp             HHHHHHHHHH--HHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred             CCCChHHHHH--HHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-----------
Confidence            3478999999  99999999999998    6899998775 4999999999999999999999999985           


Q ss_pred             hhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHH
Q 015738          111 EPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV  190 (401)
Q Consensus       111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~  190 (401)
                             +..+..+.++++.++..+...++..+++.+.++ ...+..|.||+++|+.                .+..+++
T Consensus        86 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~----------------~~~~~~~  141 (337)
T 4g8k_A           86 -------VLRKKNGATPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAV----------------YGKVKAL  141 (337)
T ss_dssp             -------TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHH----------------TTCHHHH
T ss_pred             -------hhhccCCCchhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHH----------------cCcHHHH
Confidence                   567788999999999999999999999999885 4788899999999998                3489999


Q ss_pred             HHHHhcCCCCccC----------CCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCC----H
Q 015738          191 LALLENSTSVSHE----------GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGN----Y  256 (401)
Q Consensus       191 ~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~----~  256 (401)
                      +++++.|++++..          +..|.||||+|+..  ++.+.++.|+.+.+.+++..+..|.|+++.++..+.    .
T Consensus       142 ~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~--g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~  219 (337)
T 4g8k_A          142 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE  219 (337)
T ss_dssp             HHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH--TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHH
T ss_pred             HHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC--CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHH
Confidence            9999999988753          44689999999999  899999999988888899999999999998877554    4


Q ss_pred             HHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCC
Q 015738          257 RTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP  336 (401)
Q Consensus       257 ~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  336 (401)
                      .++++|++.|+++ +..+. .|.||||.|+..|+.++++.|++.....++.+|..|+||||+|++.|+.+++++|++   
T Consensus       220 ~i~~lLl~~gad~-n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~---  294 (337)
T 4g8k_A          220 AITHLLLDHGADV-NVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK---  294 (337)
T ss_dssp             HHHHHHHHTTCCT-TCCCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT---
T ss_pred             HHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH---
Confidence            6889999999987 44444 789999999999999999999997655589999999999999999999999999999   


Q ss_pred             ccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhh
Q 015738          337 LARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAV  379 (401)
Q Consensus       337 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  379 (401)
                       .|+++|.     .||||+|+..++.+++++||++ ||++|..
T Consensus       295 -~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~  330 (337)
T 4g8k_A          295 -RGASTDC-----GDLVMTARRNYDHSLVKVLLSH-GAKEDFH  330 (337)
T ss_dssp             -TSCSSTT-----CCHHHHHHHTTCHHHHHHHHHT-TCCC---
T ss_pred             -CCCCCCC-----CCHHHHHHHcCCHHHHHHHHHC-cCCCCCC
Confidence             7888865     4699999999999999999976 9999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.9e-48  Score=336.82  Aligned_cols=312  Identities=18%  Similarity=0.173  Sum_probs=265.3

Q ss_pred             hhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhh
Q 015738           18 KDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAK   97 (401)
Q Consensus        18 ~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   97 (401)
                      ..|.+.+.+....+..|.++||.|  +..|+.+.++.++.   ..+.+++..|..|.||||+||..|+.++|++|+++|+
T Consensus         8 l~l~~~~~~~~~~~~~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   82 (351)
T 3utm_A            8 LDLADPSAKAVLTGEYKKDELLEA--ARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA   82 (351)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHH--HHHTCHHHHHHHCC---TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hhccCCceeeeeeccccchhHHHH--HHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            355566777788888899999999  99999999988865   4688899999999999999999999999999999998


Q ss_pred             hhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHh
Q 015738           98 LAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRG  177 (401)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  177 (401)
                      ++                  +..+..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+.          
T Consensus        83 ~~------------------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~----------  133 (351)
T 3utm_A           83 DV------------------HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAAS----------  133 (351)
T ss_dssp             CT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH----------
T ss_pred             CC------------------CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH----------
Confidence            84                  6678899999999999999999999999998854 678899999999998          


Q ss_pred             hhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHH
Q 015738          178 LLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYR  257 (401)
Q Consensus       178 l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~  257 (401)
                            .++.+++++|++.|++++..+..|.+|++.++..  +..+.+.+...             .+++..++..+..+
T Consensus       134 ------~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~--~~~~~~~~~~~-------------~~~~~~~~~~~~~~  192 (351)
T 3utm_A          134 ------KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP--ELRERLTYEFK-------------GHSLLQAAREADLA  192 (351)
T ss_dssp             ------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSH--HHHHHHHHHHH-------------HHHHHHHHHTTCHH
T ss_pred             ------cCCHHHHHHHHHcCCCCccccCCCCcchHHHhhh--hhHHHHHhhhc-------------ccHHHHHHHhccHH
Confidence                  3489999999999999999999999999998766  44444443332             24577788888888


Q ss_pred             HHHHHHhcCccccccccCCCCchHHHHHHhc---CCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhc
Q 015738          258 TVNLLLETDQSASNIADKDRKMTALHLAAGK---GDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN  334 (401)
Q Consensus       258 ~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  334 (401)
                      .++.++......  ......|.||||.|+..   +..+++++|++.+.+ ++.++..|+||||+|+..++.+++++|++ 
T Consensus       193 ~~~~~l~~~~~~--~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-  268 (351)
T 3utm_A          193 KVKKTLALEIIN--FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHK-  268 (351)
T ss_dssp             HHHHHTTTCCTT--CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             HHHHHHHhhccc--ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence            888888776443  23334788999999988   558899999998887 67888999999999999999999999998 


Q ss_pred             CCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          335 NPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       335 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                         .|++++.+|..|+||||+|+..|+.+++++|++. |+|++.+|..|.||+++|.+
T Consensus       269 ---~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          269 ---HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             ---TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHSCH
T ss_pred             ---CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCChhhhhhH
Confidence               7899999999999999999999999999999866 99999999999999998843

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.9e-47  Score=331.43  Aligned_cols=320  Identities=22%  Similarity=0.197  Sum_probs=261.9

Q ss_pred             chhhhhhhhcCCCCchhhhhhH-HHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERD-VIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA   80 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A   80 (401)
                      .++|+.||+.|+.+.|++|+.. +++....+..|.||||+|  +..|+.+++++|++    .|++++..|..|.||||+|
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCcHHHHH
Confidence            4789999999999999999986 666666777899999999  99999999999999    7999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 015738           81 AKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKT  160 (401)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t  160 (401)
                      |..|+.+++++|+++|+++                  +..+..|.||||+|+..|+.+++++|+++|++. ...+..|.+
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~  159 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACV------------------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKS  159 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             HHCCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCc
Confidence            9999999999999999884                  567788999999999999999999999999984 477889999


Q ss_pred             HHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccc
Q 015738          161 PLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD  240 (401)
Q Consensus       161 ~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~  240 (401)
                      |+++++...                ..+.+.+...            ..++..++..  +....+..++..... ....+
T Consensus       160 ~l~~a~~~~----------------~~~~~~~~~~------------~~~~~~~~~~--~~~~~~~~~l~~~~~-~~~~~  208 (351)
T 3utm_A          160 AVDMAPTPE----------------LRERLTYEFK------------GHSLLQAARE--ADLAKVKKTLALEII-NFKQP  208 (351)
T ss_dssp             HHHHCSSHH----------------HHHHHHHHHH------------HHHHHHHHHT--TCHHHHHHHTTTCCT-TCCCT
T ss_pred             chHHHhhhh----------------hHHHHHhhhc------------ccHHHHHHHh--ccHHHHHHHHHhhcc-cccCC
Confidence            999998621                4444544432            3456666666  677778777776654 33466


Q ss_pred             cCCCcHHHHHHHc---CCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHH
Q 015738          241 QYGWTPIHYAAYY---GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLH  317 (401)
Q Consensus       241 ~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  317 (401)
                      ..+.||||+|+..   ++.+++++|++.|.++ +..+. .|.||||.|+..|+.+++++|+++|.+ ++.+|..|+||||
T Consensus       209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~  285 (351)
T 3utm_A          209 QSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALH  285 (351)
T ss_dssp             TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHH
Confidence            7799999999999   5689999999999887 34443 799999999999999999999999988 7889999999999


Q ss_pred             HHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          318 YAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       318 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      +|+..++.+++++|++    .|++++.+|..|.||+++|    ..+++++|.+...    .....+.+++..|.+
T Consensus       286 ~A~~~~~~~~v~~Ll~----~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~----~~~~~~~~~l~~A~~  348 (351)
T 3utm_A          286 RAALAGHLQTCRLLLS----YGSDPSIISLQGFTAAQMG----NEAVQQILSESTP----MRTSDVDYRLLEASK  348 (351)
T ss_dssp             HHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---------------------
T ss_pred             HHHHcCcHHHHHHHHH----cCCCCCCcCCCCCChhhhh----hHHHHHHHHhccc----cccCcceeehhhhhc
Confidence            9999999999999999    8999999999999999998    5567777765522    344567778877743

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-45  Score=311.17  Aligned_cols=265  Identities=23%  Similarity=0.278  Sum_probs=239.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhc-cCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV-NNEKNTALHEAVSQGNVDVVKILTREDPGY  150 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  150 (401)
                      +|.||||.|+..|+.++|++|+++|+++                  +.. +..|.||||+|+..|+.+++++|+++|+++
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   65 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANV------------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP   65 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            5789999999999999999999999875                  333 667999999999999999999999999885


Q ss_pred             CCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHH
Q 015738          151 PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLE  230 (401)
Q Consensus       151 ~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~  230 (401)
                       ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.+++|+.
T Consensus        66 -~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~  126 (285)
T 1wdy_A           66 -VLRKKNGATPFLLAAI----------------AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY--GKVKALKFLYK  126 (285)
T ss_dssp             -TCCCTTCCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT--TCHHHHHHHHH
T ss_pred             -cccCCCCCCHHHHHHH----------------cCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh--CCHHHHHHHHH
Confidence             4678899999999998                3389999999999999999999999999999998  88999999998


Q ss_pred             hhccccccc----------ccCCCcHHHHHHHcCCHHHHHHHHhc-CccccccccCCCCchHHHHHHhcCC----HHHHH
Q 015738          231 KKKNLIKET----------DQYGWTPIHYAAYYGNYRTVNLLLET-DQSASNIADKDRKMTALHLAAGKGD----ARTVE  295 (401)
Q Consensus       231 ~~~~~~~~~----------~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~g~t~L~~a~~~~~----~~~~~  295 (401)
                      .+.. ++..          +..|.||||+|+..|+.+++++|++. +.++ +..+. .|.||||.|+..++    .++++
T Consensus       127 ~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~i~~  203 (285)
T 1wdy_A          127 RGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITH  203 (285)
T ss_dssp             TTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCT-TSCCHHHHHHHCSCTTTHHHHHH
T ss_pred             hCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCC-CCCCHHHHHHHccccchHHHHHH
Confidence            8654 4444          67799999999999999999999987 7665 44443 78999999999999    99999


Q ss_pred             HhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCC
Q 015738          296 RIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQAN  375 (401)
Q Consensus       296 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  375 (401)
                      +|++.|.+ ++.++..|+||||+|+..++.+++++|++.   .|++++.+|..|.||||+|+..++.+++++|++. |++
T Consensus       204 ~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~  278 (285)
T 1wdy_A          204 LLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GAS  278 (285)
T ss_dssp             HHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSC
T ss_pred             HHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCC
Confidence            99999988 688999999999999999999999999984   5899999999999999999999999999999977 999


Q ss_pred             hhhhhc
Q 015738          376 YDAVNK  381 (401)
Q Consensus       376 ~~~~~~  381 (401)
                      ++.+|.
T Consensus       279 ~~~~d~  284 (285)
T 1wdy_A          279 TDCGDL  284 (285)
T ss_dssp             SCCSSC
T ss_pred             CCcccc
Confidence            998873

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.3e-46  Score=324.63  Aligned_cols=292  Identities=20%  Similarity=0.167  Sum_probs=252.0

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhh-cCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAK-AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA   80 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A   80 (401)
                      +|+||.||+.|++++|++||++|++.+..+. .|.||||+|  +..|+.+++++|++    .|++++..+..+.+|++.+
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHH----cCCchhhhccCCCchhHHH
Confidence            4789999999999999999999998876554 599999999  99999999999999    7999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC--------
Q 015738           81 AKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPY--------  152 (401)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~--------  152 (401)
                      +..+...++..+++.+++                  ++..+..|.||||+|+..|+.+++++|+++|+++..        
T Consensus       100 ~~~~~~~~~~~~~~~~~~------------------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~  161 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGAD------------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ  161 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCC------------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC---
T ss_pred             HhcccchhhHHhhhccch------------------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccccc
Confidence            999999999999999887                  467888999999999999999999999999987532        


Q ss_pred             -CCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHh-cCCCCccCCCCCCcHHhHHHhhcc-cccchHHHHH
Q 015738          153 -SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLE-NSTSVSHEGPNGKTALHAAAMRSF-AVDTALPKLL  229 (401)
Q Consensus       153 -~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~~~ll  229 (401)
                       ..+..|.||||+|+.                .++.+++++|++ .|++++..+..|.++++.++.... ...+.+..+|
T Consensus       162 ~~~~~~g~T~L~~A~~----------------~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL  225 (337)
T 4g8k_A          162 ERLRKGGATALMDAAE----------------KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL  225 (337)
T ss_dssp             --CTTCSCCHHHHHHH----------------HTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH
T ss_pred             ccccCCCCcHHHHHHH----------------CCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHH
Confidence             234568999999998                338999999996 699999999999999998876521 2234455555


Q ss_pred             HhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhc-CccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCcccc
Q 015738          230 EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET-DQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELV  308 (401)
Q Consensus       230 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  308 (401)
                      ...+.+++.++..|.||||+|+..|+.+++++|++. +.++ +..+. .|.||||+|++.|+.+++++|+++|++ ++  
T Consensus       226 l~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n--  300 (337)
T 4g8k_A          226 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDS-DGKTALLLAVELKLKKIAELLCKRGAS-TD--  300 (337)
T ss_dssp             HHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-TCBCT-TSCBHHHHHHHTTCHHHHHHHHTTSCS-ST--
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-cCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-CC--
Confidence            555666899999999999999999999999999986 4454 44444 899999999999999999999999987 33  


Q ss_pred             CCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccC
Q 015738          309 DNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEG  345 (401)
Q Consensus       309 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  345 (401)
                         +.+|||+|++.++.+++++||+    .|+++|..
T Consensus       301 ---~~~~L~~A~~~~~~~iv~~Ll~----~GA~~d~~  330 (337)
T 4g8k_A          301 ---CGDLVMTARRNYDHSLVKVLLS----HGAKEDFH  330 (337)
T ss_dssp             ---TCCHHHHHHHTTCHHHHHHHHH----TTCCC---
T ss_pred             ---CCCHHHHHHHcCCHHHHHHHHH----CcCCCCCC
Confidence               4579999999999999999999    88988864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.1e-45  Score=308.72  Aligned_cols=265  Identities=22%  Similarity=0.203  Sum_probs=239.5

Q ss_pred             cCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcc-cCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCch
Q 015738           33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQV-NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVE  111 (401)
Q Consensus        33 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  111 (401)
                      .|.|+||+|  +..|+.+++++|++    .+.+++.. +..|.||||+|+..|+.+++++|+++|+++            
T Consensus         4 ~g~~~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------   65 (285)
T 1wdy_A            4 EDNHLLIKA--VQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP------------   65 (285)
T ss_dssp             HHHHHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------
T ss_pred             ccchHHHHH--HHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------
Confidence            488999999  99999999999988    67888877 788999999999999999999999999884            


Q ss_pred             hhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHH
Q 015738          112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL  191 (401)
Q Consensus       112 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~  191 (401)
                            +..+..|.||||+|+..|+.+++++|+++|+++ ...+..|.|||++|+.                .++.++++
T Consensus        66 ------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~----------------~~~~~~~~  122 (285)
T 1wdy_A           66 ------VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAV----------------YGKVKALK  122 (285)
T ss_dssp             ------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHH----------------TTCHHHHH
T ss_pred             ------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHH----------------hCCHHHHH
Confidence                  566788999999999999999999999999884 4778889999999998                34899999


Q ss_pred             HHHhcCCCCccC----------CCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCC----HH
Q 015738          192 ALLENSTSVSHE----------GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGN----YR  257 (401)
Q Consensus       192 ~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~----~~  257 (401)
                      +|++.|++++..          +..|.||||+|+..  ++.+.+++|+...+..++..+..|.||||+|+..++    .+
T Consensus       123 ~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  200 (285)
T 1wdy_A          123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA  200 (285)
T ss_dssp             HHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH--TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHH
T ss_pred             HHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc--CCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHH
Confidence            999999999877          77899999999999  899999999998777789999999999999999999    99


Q ss_pred             HHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhh-cCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCC
Q 015738          258 TVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS-GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP  336 (401)
Q Consensus       258 ~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  336 (401)
                      ++++|++.|+++ +..+. .|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++.+++++|++   
T Consensus       201 i~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~---  274 (285)
T 1wdy_A          201 ITHLLLDHGADV-NVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCK---  274 (285)
T ss_dssp             HHHHHHHTTCCS-SCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH---
T ss_pred             HHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHH---
Confidence            999999999887 34443 79999999999999999999999 5555 78999999999999999999999999999   


Q ss_pred             ccccccccCCC
Q 015738          337 LARSLIDEGDA  347 (401)
Q Consensus       337 ~~~~~~~~~~~  347 (401)
                       .|++++.+|.
T Consensus       275 -~Ga~~~~~d~  284 (285)
T 1wdy_A          275 -RGASTDCGDL  284 (285)
T ss_dssp             -HSSCSCCSSC
T ss_pred             -cCCCCCcccc
Confidence             8999998873

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-45  Score=323.47  Aligned_cols=313  Identities=17%  Similarity=0.167  Sum_probs=227.2

Q ss_pred             hhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHH
Q 015738            3 LNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK   82 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~   82 (401)
                      .+|+.|+..|+.+.++.++++.....    .-.+++.-+  ...|+.+++++++.         ..++..|.||||+|+.
T Consensus        39 ~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~g~~~~~~~~~~---------~~~~~~g~t~L~~Aa~  103 (373)
T 2fo1_E           39 HSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGN--DFLGDFNHTNLQIP---------TEPEPESPIKLHTEAA  103 (373)
T ss_dssp             ----------------------------------------------------------------------CCCHHHHHHH
T ss_pred             cccccccCCccccchhhhhhhhcccc----CccccCCCC--Cccccccccccccc---------cCCCCCCccHHHHHhc
Confidence            46788888889999988888644321    134455667  77788888888755         2468899999999999


Q ss_pred             cCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhcc-CCCChHHHHHHHcCCHHHHHHHH--------hcCCCCCCC
Q 015738           83 FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVN-NEKNTALHEAVSQGNVDVVKILT--------REDPGYPYS  153 (401)
Q Consensus        83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll--------~~~~~~~~~  153 (401)
                      .+ .+++++|+...                    ++..+ ..|.||||+|+..|+.+++++|+        +.|.++ +.
T Consensus       104 ~~-~~~~~~L~~~~--------------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~  161 (373)
T 2fo1_E          104 GS-YAITEPITRES--------------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NA  161 (373)
T ss_dssp             SS-SCCCSCCSTTT--------------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TC
T ss_pred             CC-chHHHHhcccc--------------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cC
Confidence            55 47888876532                    34556 68999999999999998888776        678874 47


Q ss_pred             CCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhc
Q 015738          154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK  233 (401)
Q Consensus       154 ~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~  233 (401)
                      .|..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.++.|+..+.
T Consensus       162 ~d~~g~TpL~~A~~----------------~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~  223 (373)
T 2fo1_E          162 MDCDENTPLMLAVL----------------ARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN--RDFGMMVYMLNSTK  223 (373)
T ss_dssp             CCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT--TCHHHHHHHTTSHH
T ss_pred             CCCCCCCHHHHHHH----------------cChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC--CCHHHHHHHHhcCc
Confidence            78899999999998                3389999999999999999999999999999999  88999999998763


Q ss_pred             --ccccccccCCCcHHHHHHHcC---CHHHHHHHHhcCcccccc------ccCCCCchHHHHHHhcCCHHHHHHhhhcCC
Q 015738          234 --NLIKETDQYGWTPIHYAAYYG---NYRTVNLLLETDQSASNI------ADKDRKMTALHLAAGKGDARTVERIISGNP  302 (401)
Q Consensus       234 --~~~~~~~~~~~t~L~~a~~~~---~~~~~~~Ll~~~~~~~~~------~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  302 (401)
                        ..++..+..|.||||+|+..+   +.+++++|++.|++....      .....|.||||+|+..|+.+++++|++.+.
T Consensus       224 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  303 (373)
T 2fo1_E          224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG  303 (373)
T ss_dssp             HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred             cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence              557888999999999999998   899999999999887431      123478999999999999999999999885


Q ss_pred             CCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCC
Q 015738          303 KCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQAN  375 (401)
Q Consensus       303 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  375 (401)
                      ..++.+|..|+||||+|+..|+.+++++|++    .|++++.+|..|.||||+|+..|+.+++++|++. +++
T Consensus       304 ~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~----~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~  371 (373)
T 2fo1_E          304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ----QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE  371 (373)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred             CCccCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence            5589999999999999999999999999999    8999999999999999999999999999999966 654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-43  Score=296.86  Aligned_cols=273  Identities=16%  Similarity=0.110  Sum_probs=203.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 015738           69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDP  148 (401)
Q Consensus        69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  148 (401)
                      ....|.|+||+|+..|+.+.+..++..+......       ...+...+...+..|.||||+|+..|+.+++++|++.|.
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~   83 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG-------IRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW   83 (285)
T ss_dssp             -------------------------------CCS-------EECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccc-------hhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            3457899999999999988888877765442100       000111145678899999999999999999999999998


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHH
Q 015738          149 GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKL  228 (401)
Q Consensus       149 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  228 (401)
                      ++ ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.++.|
T Consensus        84 ~~-~~~~~~g~t~L~~A~~----------------~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~--~~~~~v~~L  144 (285)
T 3d9h_A           84 AV-NIITADHVSPLHEACL----------------GGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS--GSWDCVNLL  144 (285)
T ss_dssp             CS-CEECTTCCCHHHHHHH----------------TTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH--TCHHHHHHH
T ss_pred             CC-CCcCCCCCCHHHHHHH----------------CCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CHHHHHHHH
Confidence            84 4788899999999998                3489999999999999999999999999999999  889999999


Q ss_pred             HHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCcccc
Q 015738          229 LEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELV  308 (401)
Q Consensus       229 l~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  308 (401)
                      +..+.. ++. +..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||.|+..|+.+++++|++.+++ ++ .
T Consensus       145 l~~g~~-~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~  218 (285)
T 3d9h_A          145 LQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKIS-HLGTPLYLACENQQRACVKKLLESGAD-VN-Q  218 (285)
T ss_dssp             HHTTCC-SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBT-TTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-C
T ss_pred             HHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-C
Confidence            987655 443 345999999999999999999999999887 44444 788999999999999999999999988 45 4


Q ss_pred             CCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhh
Q 015738          309 DNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAV  379 (401)
Q Consensus       309 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  379 (401)
                      +..|+||||+|+..++.+++++|++    .|++++.+|..|+||||+|+  ++.+++++|++..|+++..+
T Consensus       219 ~~~g~t~L~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~~  283 (285)
T 3d9h_A          219 GKGQDSPLHAVVRTASEELACLLMD----FGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPKP  283 (285)
T ss_dssp             CBTTBCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCCC
Confidence            8899999999999999999999999    89999999999999999999  55789999998888887643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.1e-42  Score=291.55  Aligned_cols=264  Identities=20%  Similarity=0.136  Sum_probs=180.6

Q ss_pred             hhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHh
Q 015738           66 LLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTR  145 (401)
Q Consensus        66 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  145 (401)
                      ++.+|..|+||||+||..|+.++|++|+++|++..               .++..+..|.||||+|+..|+.+++++|++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~   66 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---------------YLDLQNDLGQTALHLAAILGEASTVEKLYA   66 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG---------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---------------cccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45678999999999999999999999999988731               145678889999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchH
Q 015738          146 EDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAL  225 (401)
Q Consensus       146 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  225 (401)
                      +|+++ ...+..|.||||+|+.                .++.+++++|++.|++.........  +  ..          
T Consensus        67 ~ga~~-~~~~~~g~tpL~~A~~----------------~~~~~~v~~Ll~~~~~~~~~~~~~~--~--~~----------  115 (282)
T 1oy3_D           67 AGAGV-LVAERGGHTALHLACR----------------VRAHTCACVLLQPRPSHPRDASDTY--L--TQ----------  115 (282)
T ss_dssp             TTCCS-SCCCTTSCCHHHHHTT----------------TTCHHHHHHHSSSCCSSCCCC---------------------
T ss_pred             cCCCC-CCCCCCCCCHHHHHHH----------------cCCcchhHhhhccCCCCchhhHHHH--h--hc----------
Confidence            99885 4778889999999998                3488999999999887643221110  0  00          


Q ss_pred             HHHHHhhcccccccccCCCcHHHHHHHcCCH-HHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCC
Q 015738          226 PKLLEKKKNLIKETDQYGWTPIHYAAYYGNY-RTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKC  304 (401)
Q Consensus       226 ~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~  304 (401)
                            .   .......+.++++.++..+.. .....+...+.+. +..+ ..|.||||.|+..|+.+++++|++.|++ 
T Consensus       116 ------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-  183 (282)
T 1oy3_D          116 ------S---QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAEN-YDGHTPLHVAVIHKDAEMVRLLRDAGAD-  183 (282)
T ss_dssp             -------------------------------------CCCGGGGT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCC-
T ss_pred             ------c---cccCcchhcchhhhccccccchhhhhhhhhhhhcC-CCcC-CCCcCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence                  0   011122345556655554433 3333344444433 3333 3788899999988999999999988887 


Q ss_pred             ccccCC-CCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccC
Q 015738          305 YELVDN-RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQN  383 (401)
Q Consensus       305 ~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  383 (401)
                      ++.++. .|+||||+|+..++.+++++|++    .|++++.+|..|+||||+|+..++.+++++|++. |++++.+|..|
T Consensus       184 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g  258 (282)
T 1oy3_D          184 LNKPEPTCGRTPLHLAVEAQAASVLELLLK----AGADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDK  258 (282)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC---
T ss_pred             CCCCCCCCCcCHHHHHHHcCCHHHHHHHHH----cCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCCcc
Confidence            456664 48999999999999999999998    7889999999999999999999999999888865 99999999999


Q ss_pred             cceeeeeec
Q 015738          384 VSVRHVFNY  392 (401)
Q Consensus       384 ~t~l~~a~~  392 (401)
                      .||+++|..
T Consensus       259 ~tpl~~a~~  267 (282)
T 1oy3_D          259 LSPCSSSGS  267 (282)
T ss_dssp             ---------
T ss_pred             cccccccCC
Confidence            999998844

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.4e-43  Score=306.25  Aligned_cols=275  Identities=20%  Similarity=0.171  Sum_probs=220.3

Q ss_pred             hhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhccc-CCCCcHHHHHHHc
Q 015738            5 FFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN-AKGDTPLHLAAKF   83 (401)
Q Consensus         5 l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~~   83 (401)
                      +..+...|+.+++++++..     ..+..|.|+||+|  +..+ .+++++|+.      .+++..| ..|.||||+||..
T Consensus        70 ~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~A--a~~~-~~~~~~L~~------~~~n~~d~~~g~t~Lh~Aa~~  135 (373)
T 2fo1_E           70 GNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTE--AAGS-YAITEPITR------ESVNIIDPRHNRTVLHWIASN  135 (373)
T ss_dssp             -----------------------------CCCHHHHH--HHSS-SCCCSCCST------TTTTTCCCSSCCCHHHHHHCT
T ss_pred             CCCCCcccccccccccccc-----CCCCCCccHHHHH--hcCC-chHHHHhcc------ccccccCCcCCCCHHHHHHHC
Confidence            3456666888888887754     3455699999999  8854 578887733      4677788 7899999999999


Q ss_pred             CCHHHHHHHH--------HhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 015738           84 GHFEIVRVLI--------ERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN  155 (401)
Q Consensus        84 ~~~~~v~~Ll--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  155 (401)
                      |+.+++++|+        +.|++                  ++..|..|.||||+|+..|+.+++++|+++|+++. ..+
T Consensus       136 g~~~~v~~Ll~~~~~~ll~~ga~------------------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~  196 (373)
T 2fo1_E          136 SSAEKSEDLIVHEAKECIAAGAD------------------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYN  196 (373)
T ss_dssp             TCCSCCTTHHHHHHHHHHHTCCC------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCC
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCC------------------CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccC
Confidence            9999988887        56666                  46778899999999999999999999999999854 778


Q ss_pred             CCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcC---CCCccCCCCCCcHHhHHHhhccc---ccchHHHHH
Q 015738          156 NYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENS---TSVSHEGPNGKTALHAAAMRSFA---VDTALPKLL  229 (401)
Q Consensus       156 ~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~---~~~~~~~~~~~t~l~~a~~~~~~---~~~~~~~ll  229 (401)
                      ..|.||||+|+.                .++.+++++|++.+   ++++..+..|.||||+|+..  +   ..+.++.|+
T Consensus       197 ~~g~t~L~~A~~----------------~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~--~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          197 KSERSALHQAAA----------------NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN--EGRDQVASAKLLV  258 (373)
T ss_dssp             TTCCCHHHHHHH----------------TTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS--CSTTHHHHHHHHH
T ss_pred             CCCCCHHHHHHH----------------CCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh--CCcchHHHHHHHH
Confidence            899999999998                44899999999998   89999999999999999987  5   678888888


Q ss_pred             Hhhcccccc--------cccCCCcHHHHHHHcCCHHHHHHHHhcC-ccccccccCCCCchHHHHHHhcCCHHHHHHhhhc
Q 015738          230 EKKKNLIKE--------TDQYGWTPIHYAAYYGNYRTVNLLLETD-QSASNIADKDRKMTALHLAAGKGDARTVERIISG  300 (401)
Q Consensus       230 ~~~~~~~~~--------~~~~~~t~L~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  300 (401)
                      ..+.. ++.        .+..|.||||+|+..|+.+++++|++.+ .++ +..+. .|.||||+|+..|+.+++++|+++
T Consensus       259 ~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~  335 (373)
T 2fo1_E          259 EKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDE-DGKTPIMLAAQEGRIEVVMYLIQQ  335 (373)
T ss_dssp             HHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCC-CCCCHHHHHHHcCCHHHHHHHHHc
Confidence            87654 433        5668999999999999999999999887 554 44444 899999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHhCChhHHHHHHhc
Q 015738          301 NPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN  334 (401)
Q Consensus       301 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  334 (401)
                      |++ ++.+|..|+||||+|+..++.+++++|++.
T Consensus       336 gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          336 GAS-VEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             TCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            988 788999999999999999999999999993

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.5e-42  Score=283.66  Aligned_cols=230  Identities=19%  Similarity=0.198  Sum_probs=181.6

Q ss_pred             hHhccCCCChHHHHHHHcC-------------CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhcc
Q 015738          117 IRMVNNEKNTALHEAVSQG-------------NVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRT  183 (401)
Q Consensus       117 ~~~~~~~g~t~L~~A~~~~-------------~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~  183 (401)
                      ++.+|.+|.||||+|+..|             +.+++++|++.|++.....+..|.||||+|+.                
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~----------------   66 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR----------------   66 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHH----------------
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHH----------------
Confidence            5678899999999999977             89999999999999877789999999999998                


Q ss_pred             CCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 015738          184 SASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLL  263 (401)
Q Consensus       184 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll  263 (401)
                      .++.+++++|++.|++++..+..|.||||+|+..  ++.+.++.|+..+...++..+..|.||||+|+..|+.+++++|+
T Consensus        67 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  144 (253)
T 1yyh_A           67 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA--DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI  144 (253)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHH
Confidence            3489999999999999999999999999999999  88999999999988778899999999999999999999999999


Q ss_pred             hcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccc
Q 015738          264 ETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLID  343 (401)
Q Consensus       264 ~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  343 (401)
                      +.|+++ +..+. .|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++.+++++|++    .|++++
T Consensus       145 ~~g~~~-~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~  217 (253)
T 1yyh_A          145 NSHADV-NAVDD-LGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD----HFANRD  217 (253)
T ss_dssp             HTTCCT-TCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTT
T ss_pred             HcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH----cCCCcc
Confidence            999887 34443 799999999999999999999999988 68899999999999999999999999999    899999


Q ss_pred             cCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          344 EGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       344 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      .+|..|+||||+|++.|+.+++++|...
T Consensus       218 ~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          218 ITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999865

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-42  Score=290.62  Aligned_cols=244  Identities=17%  Similarity=0.151  Sum_probs=197.1

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHhcCC----------CCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHH
Q 015738          121 NNEKNTALHEAVSQGNVDVVKILTREDP----------GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV  190 (401)
Q Consensus       121 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~----------~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~  190 (401)
                      ...|.|++|+|+..|+.+.+..++..++          ......+..|.||||+|+.                .++.+++
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~----------------~g~~~~v   75 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAI----------------HGHQLSL   75 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHH----------------TTCHHHH
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHH----------------cCCHHHH
Confidence            4578999999999999777777655432          2234678899999999999                4489999


Q ss_pred             HHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcccc
Q 015738          191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS  270 (401)
Q Consensus       191 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~  270 (401)
                      ++|++.|++++..+..|.||||+|+..  ++.+.++.|++.+ .+++..+..|.||||+|+..|+.+++++|++.+++..
T Consensus        76 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  152 (285)
T 3d9h_A           76 RNLISQGWAVNIITADHVSPLHEACLG--GHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ  152 (285)
T ss_dssp             HHHHHTTCCSCEECTTCCCHHHHHHHT--TCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHC--CcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC
Confidence            999999999999999999999999999  8899999999875 4488899999999999999999999999999998863


Q ss_pred             ccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCC
Q 015738          271 NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN  350 (401)
Q Consensus       271 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  350 (401)
                      .   ...|.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|++    .|++++. +..|.
T Consensus       153 ~---~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~-~~~g~  223 (285)
T 3d9h_A          153 P---ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLE----SGADVNQ-GKGQD  223 (285)
T ss_dssp             C---SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHH----TTCCTTC-CBTTB
T ss_pred             C---CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH----CCCCCCC-CCCCC
Confidence            2   23589999999999999999999999988 68899999999999999999999999999    7889985 88999


Q ss_pred             cHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeecc
Q 015738          351 TPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYG  393 (401)
Q Consensus       351 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  393 (401)
                      ||||+|+..++.+++++|++. |+|++.+|..|+||+++|...
T Consensus       224 t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          224 SPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhcCc
Confidence            999999999999999999976 999999999999999999743

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.9e-43  Score=307.62  Aligned_cols=265  Identities=22%  Similarity=0.159  Sum_probs=194.6

Q ss_pred             hhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHH
Q 015738           65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILT  144 (401)
Q Consensus        65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  144 (401)
                      +.+..|..|.||||+||..|+.++|++|+++|+++                  +..+..|.||||+|+..|+.+++++|+
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll   73 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP------------------TIQNRFGCTALHLACKFGCVDTAKYLA   73 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTCCCHHHHHHHHCCHHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------------cccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            34455666777777777777777777777776663                  455666777777777777777777777


Q ss_pred             hcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhc----CCCCcc-----------------C
Q 015738          145 REDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN----STSVSH-----------------E  203 (401)
Q Consensus       145 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~----~~~~~~-----------------~  203 (401)
                      ++++..   .+..|.||||+|+.                .++.+++++|++.    |.+++.                 .
T Consensus        74 ~~g~~~---~~~~g~t~L~~A~~----------------~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (364)
T 3ljn_A           74 SVGEVH---SLWHGQKPIHLAVM----------------ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK  134 (364)
T ss_dssp             HHCCCC---CCBTTBCHHHHHHH----------------TTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE
T ss_pred             HCCCCc---cccCCCCHHHHHHH----------------cCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC
Confidence            777642   23456777777776                3366777777776    555544                 6


Q ss_pred             CCCCCcHHhHHHhhccc--ccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcc-----ccccccCC
Q 015738          204 GPNGKTALHAAAMRSFA--VDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQS-----ASNIADKD  276 (401)
Q Consensus       204 ~~~~~t~l~~a~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~  276 (401)
                      +..|.||||+|+..  +  +.++++.|+..+ .+++..+..|.||||+|+..|+.+++++|++.|++     . +..+. 
T Consensus       135 ~~~g~t~L~~A~~~--g~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~-  209 (364)
T 3ljn_A          135 HCKGQTALHWCVGL--GPEYLEMIKILVQLG-ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANK-  209 (364)
T ss_dssp             EESCCCHHHHHHHS--CGGGHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCT-
T ss_pred             CCCCCCHHHHHHHc--CCchHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCC-
Confidence            77788899998888  6  778888888774 44778888888999999988999999999888877     3 33333 


Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCcccccccc------------
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDE------------  344 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~------------  344 (401)
                      .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++    .|++++.            
T Consensus       210 ~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~  284 (364)
T 3ljn_A          210 QGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQ----KTDVFLIQACPYHNGTTVL  284 (364)
T ss_dssp             TCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHH----HSCHHHHHTCTTBSSSSBC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHH----cCCchhhhcCcccCccccc
Confidence            788899999988899999999888887 67888888999999999899999999888    4444322            


Q ss_pred             CCCCCCcHHHHHHHhCChhHHHHHHhhcCCChh
Q 015738          345 GDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYD  377 (401)
Q Consensus       345 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  377 (401)
                      .+..|.||++.|+..+..+.+..||.. +++..
T Consensus       285 ~~~~~~~~l~~aa~~~~~~~v~~ll~~-~~~~~  316 (364)
T 3ljn_A          285 PDRVVWLDFVPAAADPSKQEVLQLLQE-KLDEV  316 (364)
T ss_dssp             GGGCCCCTTSCSSCCHHHHHHHHHHHH-HHHHH
T ss_pred             ccccccccchhhhhccCHHHHHHHHHH-HHHHH
Confidence            456778888888888887777777766 44443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.8e-41  Score=277.90  Aligned_cols=230  Identities=23%  Similarity=0.256  Sum_probs=176.5

Q ss_pred             hhhcccCCCCcHHHHHHHcC-------------CHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHH
Q 015738           65 LLLQVNAKGDTPLHLAAKFG-------------HFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA  131 (401)
Q Consensus        65 ~~~~~~~~g~t~L~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  131 (401)
                      +++.+|..|.||||+|+..|             +.+++++|+++|++.                 ....+..|.||||+|
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~-----------------~~~~d~~g~t~L~~A   64 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-----------------HNQTDRTGETALHLA   64 (253)
T ss_dssp             -------------------------------------------------------------------CCCTTSCCHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc-----------------ccccCCCCCcHHHHH
Confidence            45667777788888887766             899999999999986                 344578999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCC-CCccCCCCCCcH
Q 015738          132 VSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENST-SVSHEGPNGKTA  210 (401)
Q Consensus       132 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~  210 (401)
                      +..|+.+++++|+++|+++ ...+..|.||||+|+.                .++.+++++|++.+. +++..+..|.||
T Consensus        65 ~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  127 (253)
T 1yyh_A           65 ARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVS----------------ADAQGVFQILIRNRATDLDARMHDGTTP  127 (253)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHSTTSCTTCCCTTCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH----------------cCCHHHHHHHHHcCCCCccccCCCCCcH
Confidence            9999999999999999885 4778899999999998                338999999999997 899999999999


Q ss_pred             HhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCC
Q 015738          211 LHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD  290 (401)
Q Consensus       211 l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~  290 (401)
                      ||+|+..  ++.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+..|+
T Consensus       128 L~~A~~~--~~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          128 LILAARL--AVEGMLEDLINSHA-DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNN-REETPLFLAAREGS  202 (253)
T ss_dssp             HHHHHHH--TCSSHHHHHHHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTC
T ss_pred             HHHHHHc--ChHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHCCC
Confidence            9999999  88999999998654 48889999999999999999999999999999987 44444 79999999999999


Q ss_pred             HHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhc
Q 015738          291 ARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLEN  334 (401)
Q Consensus       291 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  334 (401)
                      .+++++|+++|++ ++.+|..|+||+++|++.|+.+++++|...
T Consensus       203 ~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          203 YETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999998 688999999999999999999999999983

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3e-42  Score=301.98  Aligned_cols=275  Identities=16%  Similarity=0.128  Sum_probs=232.6

Q ss_pred             HHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCC
Q 015738           24 VIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGD  103 (401)
Q Consensus        24 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  103 (401)
                      +++....|..|.||||+|  +..|+.+++++|++    .|++++..|..|.||||+||..|+.++|++|+++|++.    
T Consensus        10 ~~~~~~~d~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----   79 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVA--ARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----   79 (364)
T ss_dssp             ------CCHHHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC----
T ss_pred             CCCccccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc----
Confidence            344556677799999999  99999999999998    78999999999999999999999999999999999853    


Q ss_pred             CCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhc----CCCCCC----------------CCCCCCCCHHH
Q 015738          104 EEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRE----DPGYPY----------------SANNYGKTPLY  163 (401)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~----------------~~~~~~~t~l~  163 (401)
                                      .+..|.||||+|+..|+.+++++|+++    +.....                ..+..|.||||
T Consensus        80 ----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  143 (364)
T 3ljn_A           80 ----------------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH  143 (364)
T ss_dssp             ----------------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH
T ss_pred             ----------------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH
Confidence                            234799999999999999999999998    555321                16778999999


Q ss_pred             HHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccc----cccc
Q 015738          164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL----IKET  239 (401)
Q Consensus       164 ~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~----~~~~  239 (401)
                      +|+..              +..+.+++++|++.|++++..+..|.||||+|+..  ++.+.++.|+..+...    ++..
T Consensus       144 ~A~~~--------------g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~  207 (364)
T 3ljn_A          144 WCVGL--------------GPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF--RNREALDLMMDTVPSKSSLRLDYA  207 (364)
T ss_dssp             HHHHS--------------CGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHCSCSSSCCTTCC
T ss_pred             HHHHc--------------CCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHhccccccccccccc
Confidence            99982              11278999999999999999999999999999999  8899999999876542    7788


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCC-----------cccc
Q 015738          240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKC-----------YELV  308 (401)
Q Consensus       240 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~-----------~~~~  308 (401)
                      +..|.||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++++|++++++.           ....
T Consensus       208 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  285 (364)
T 3ljn_A          208 NKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDN-EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP  285 (364)
T ss_dssp             CTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCT-TSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCG
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccc
Confidence            999999999999999999999999999997 44444 8999999999999999999999987542           1225


Q ss_pred             CCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCC
Q 015738          309 DNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGD  346 (401)
Q Consensus       309 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  346 (401)
                      +..+++|+++|+..++.+.+..|+.    .+++...+.
T Consensus       286 ~~~~~~~l~~aa~~~~~~~v~~ll~----~~~~~~~~~  319 (364)
T 3ljn_A          286 DRVVWLDFVPAAADPSKQEVLQLLQ----EKLDEVVRS  319 (364)
T ss_dssp             GGCCCCTTSCSSCCHHHHHHHHHHH----HHHHHHHTC
T ss_pred             cccccccchhhhhccCHHHHHHHHH----HHHHHHhhc
Confidence            6788999999999998888888888    555544443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.8e-41  Score=282.59  Aligned_cols=230  Identities=20%  Similarity=0.171  Sum_probs=164.9

Q ss_pred             hHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCC--CCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHH
Q 015738          117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGY--PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALL  194 (401)
Q Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  194 (401)
                      ++..|..|.||||+|+..|+.+++++|+++++..  ....+..|.||||+|+.                .++.+++++|+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~----------------~g~~~~v~~Ll   65 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI----------------LGEASTVEKLY   65 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHH----------------HTCHHHHHHHH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHH----------------cCCHHHHHHHH
Confidence            3567889999999999999999999999988763  45678889999999998                33889999999


Q ss_pred             hcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcccccccc
Q 015738          195 ENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD  274 (401)
Q Consensus       195 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~  274 (401)
                      ++|++++..+..|.||||+|+..  ++.+.++.|+..+.......   ..+.                +....   . ..
T Consensus        66 ~~ga~~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~~~~~~~~~---~~~~----------------~~~~~---~-~~  120 (282)
T 1oy3_D           66 AAGAGVLVAERGGHTALHLACRV--RAHTCACVLLQPRPSHPRDA---SDTY----------------LTQSQ---D-CT  120 (282)
T ss_dssp             HTTCCSSCCCTTSCCHHHHHTTT--TCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHc--CCcchhHhhhccCCCCchhh---HHHH----------------hhccc---c-cC
Confidence            99999988888888888888877  77777777776654321100   0000                00000   0 11


Q ss_pred             CCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCC-CCcHH
Q 015738          275 KDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAE-GNTPL  353 (401)
Q Consensus       275 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-g~t~L  353 (401)
                      ...+.++++.++..+....+..++......++.++..|.||||+|+..|+.+++++|++    .|++++.++.. |.|||
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~tpL  196 (282)
T 1oy3_D          121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD----AGADLNKPEPTCGRTPL  196 (282)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHH
T ss_pred             cchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCcCHH
Confidence            12455777777766655444444443333478899999999999999999999999999    89999999865 99999


Q ss_pred             HHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          354 HVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       354 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      |+|+..|+.+++++|++. |++++.+|..|.||||+|..
T Consensus       197 ~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~  234 (282)
T 1oy3_D          197 HLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALL  234 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHH
Confidence            999999999999999977 99999999999999999943

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.5e-40  Score=272.24  Aligned_cols=230  Identities=23%  Similarity=0.205  Sum_probs=199.9

Q ss_pred             hHhccCCCChHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHH
Q 015738          117 IRMVNNEKNTALHEAVSQGNVDVVKILTR----EDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA  192 (401)
Q Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~  192 (401)
                      ++..|.+|.||||+|+..|+.+++++|++    .+.+ ....+..|.||||+|+.                .++.+++++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~----------------~~~~~~v~~   64 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVI----------------TTLPSVVRL   64 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHH----------------TTCHHHHHH
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHH----------------cCCHHHHHH
Confidence            45678999999999999999999999997    4555 55778899999999998                348999999


Q ss_pred             HHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcc---cccccccCCCcHHHHHHHcCCHHHHHHHHhcCccc
Q 015738          193 LLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN---LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSA  269 (401)
Q Consensus       193 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~---~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  269 (401)
                      |++.|++++..+..|.||||+|+..  ++.+.++.++..+..   .++..+..|.||||+|+..|+.+++++|++.|++.
T Consensus        65 Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  142 (241)
T 1k1a_A           65 LVTAGASPMALDRHGQTAAHLACEH--RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI  142 (241)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            9999999999999999999999998  889999999988752   57778889999999999999999999999999887


Q ss_pred             cccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCC
Q 015738          270 SNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEG  349 (401)
Q Consensus       270 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g  349 (401)
                      . ..+...|.||||.|+..|+.+++++|++.|.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|
T Consensus       143 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g  216 (241)
T 1k1a_A          143 D-AVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR----SGADSSLKNCHN  216 (241)
T ss_dssp             T-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTS
T ss_pred             c-cccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCcCCCC
Confidence            4 33424788999999999999999999999888 68899999999999999999999999999    899999999999


Q ss_pred             CcHHHHHHHhCChhHHHHHHhh
Q 015738          350 NTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       350 ~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      .||||+|+..++.++++.|+..
T Consensus       217 ~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          217 DTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             CCTTTTCSSHHHHHHHTC----
T ss_pred             CCHHHHHHhcCcHHHHhhhccC
Confidence            9999999999999999988755

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.2e-39  Score=268.29  Aligned_cols=228  Identities=26%  Similarity=0.332  Sum_probs=205.4

Q ss_pred             hHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhc
Q 015738          117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN  196 (401)
Q Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~  196 (401)
                      ++..+..|.||||+|+..|+.+++++|+++|.++ ...+..|.||||+|+.                .++.+++++|++.
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~   66 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAE----------------NNHLEAVKYLIKA   66 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH----------------TTCHHHHHHHHTT
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHH----------------hCCHHHHHHHHhC
Confidence            3567889999999999999999999999999885 4678889999999998                3489999999999


Q ss_pred             CCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCC
Q 015738          197 STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKD  276 (401)
Q Consensus       197 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  276 (401)
                      |++++..+..|.||||+|+..  ++.+.+++|+..+...++..+..|.||||+|+..|+.+++++|++.|+++ +..+. 
T Consensus        67 g~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-  142 (237)
T 3b7b_A           67 GALVDPKDAEGSTCLHLAAKK--GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDN-  142 (237)
T ss_dssp             TCCCCCCCTTSCCHHHHHHHT--TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-
T ss_pred             CCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCC-
Confidence            999999999999999999998  88999999999887778888999999999999999999999999999887 33333 


Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      .|.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|++    .|++++.+|..|.||||+|
T Consensus       143 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          143 EENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLS----RDSDVTLKNKEGETPLQCA  217 (237)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHS
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH----cCCCCCccCCCCCCHHHHH
Confidence            788999999999999999999999988 68889999999999999999999999999    8999999999999999999


Q ss_pred             HHhCChhHHHHHHh
Q 015738          357 AAVRPKEFHDVMNR  370 (401)
Q Consensus       357 ~~~~~~~~~~~Ll~  370 (401)
                      +..++.+.+..|++
T Consensus       218 ~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          218 SLNSQVWSALQMSK  231 (237)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998876666654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.1e-39  Score=264.42  Aligned_cols=228  Identities=22%  Similarity=0.267  Sum_probs=201.7

Q ss_pred             hhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHH
Q 015738           65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILT  144 (401)
Q Consensus        65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  144 (401)
                      +++..+..|.||||+||..|+.+++++|+++|+++                  +..+..|.||||+|+..|+.+++++|+
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll   64 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI------------------DTCSEDQRTPLMEAAENNHLEAVKYLI   64 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc------------------CccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            45678889999999999999999999999998874                  566778999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcC-CCCccCCCCCCcHHhHHHhhcccccc
Q 015738          145 REDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENS-TSVSHEGPNGKTALHAAAMRSFAVDT  223 (401)
Q Consensus       145 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~  223 (401)
                      ++|.++ ...+..|.||||+|+.                .++.+++++|++.| .+++..+..|.||||+|+..  ++.+
T Consensus        65 ~~g~~~-~~~~~~g~t~L~~A~~----------------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~  125 (237)
T 3b7b_A           65 KAGALV-DPKDAEGSTCLHLAAK----------------KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY--KHVD  125 (237)
T ss_dssp             TTTCCC-CCCCTTSCCHHHHHHH----------------TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred             hCCCCC-CCCCCCCCcHHHHHHH----------------cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc--CCHH
Confidence            998874 4678889999999998                34899999999998 88899999999999999988  8888


Q ss_pred             hHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCC
Q 015738          224 ALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPK  303 (401)
Q Consensus       224 ~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  303 (401)
                      .++.|++.+.. ++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+..++.+++++|+++|++
T Consensus       126 ~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad  202 (237)
T 3b7b_A          126 LVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNI-HGDSPLHIAARENRYDCVVLFLSRDSD  202 (237)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence            89888886554 7888899999999999999999999999999887 33333 789999999999999999999999988


Q ss_pred             CccccCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          304 CYELVDNRGCNFLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       304 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  333 (401)
                       ++.+|..|+||||+|+..++...+..|++
T Consensus       203 -~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          203 -VTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             -TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             -CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             68899999999999999999877777766

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5e-39  Score=263.39  Aligned_cols=227  Identities=24%  Similarity=0.281  Sum_probs=206.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCc
Q 015738          122 NEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVS  201 (401)
Q Consensus       122 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~  201 (401)
                      ..+.+|||.|+..|+.+++++|++.++......+..|.||||+|+.                .++.+++++|++.|++++
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~----------------~g~~~~v~~Ll~~g~~~~   67 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACS----------------AGHTEIVEFLLQLGVPVN   67 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCSC
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHH----------------cCcHHHHHHHHHhCCCCC
Confidence            4578999999999999999999999887777788999999999998                338999999999999999


Q ss_pred             cCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchH
Q 015738          202 HEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA  281 (401)
Q Consensus       202 ~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~  281 (401)
                      ..+..|.||||+|+..  ++.+.+++|+..+.. ++..+..|.||||+|+..|+.+++++|++.|.++ ...+. .|.||
T Consensus        68 ~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~  142 (231)
T 3aji_A           68 DKDDAGWSPLHIAASA--GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDH-YDATA  142 (231)
T ss_dssp             CCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCH
T ss_pred             CcCCCCCCHHHHHHHc--CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCcH
Confidence            9999999999999999  889999998887654 7888899999999999999999999999999887 33333 78999


Q ss_pred             HHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCC
Q 015738          282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRP  361 (401)
Q Consensus       282 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  361 (401)
                      ||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|.||||+|+..++
T Consensus       143 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          143 MHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVT----QGASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHhhHH
Confidence            9999999999999999999988 68899999999999999999999999999    899999999999999999999999


Q ss_pred             hhHHHHHHhhcCCC
Q 015738          362 KEFHDVMNRSTQAN  375 (401)
Q Consensus       362 ~~~~~~Ll~~~~~~  375 (401)
                      .+++++|++. |++
T Consensus       218 ~~i~~lL~~~-~a~  230 (231)
T 3aji_A          218 LILKRLAEGE-EAS  230 (231)
T ss_dssp             HHHHHHHHHH-HHC
T ss_pred             HHHHHHHccc-ccc
Confidence            9999888865 654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.9e-40  Score=270.44  Aligned_cols=192  Identities=26%  Similarity=0.287  Sum_probs=116.8

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCC
Q 015738          119 MVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENST  198 (401)
Q Consensus       119 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~  198 (401)
                      ..+..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+.                .++.+++++|++.+.
T Consensus        41 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~----------------~~~~~~~~~Ll~~~~  103 (241)
T 1k1a_A           41 IYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACE----------------HRSPTCLRALLDSAA  103 (241)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH----------------TTCHHHHHHHHHHSC
T ss_pred             cccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHH----------------cCCHHHHHHHHHcCC
Confidence            33444555555555555555555555554442 2334445555555554                224455555555444


Q ss_pred             ----CCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccc-cCCCcHHHHHHHcCCHHHHHHHHhcCccccccc
Q 015738          199 ----SVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD-QYGWTPIHYAAYYGNYRTVNLLLETDQSASNIA  273 (401)
Q Consensus       199 ----~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  273 (401)
                          +++..+..|.||||+|+..  ++.+.++.|+..+.. ++..+ ..|.||||+|+..|+.+++++|++.|+++ +..
T Consensus       104 ~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~  179 (241)
T 1k1a_A          104 PGTLDLEARNYDGLTALHVAVNT--ECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQ  179 (241)
T ss_dssp             TTSCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCB
T ss_pred             CccccccccCcCCCcHHHHHHHc--CCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCc
Confidence                4444555555555555555  555555555554433 33344 56777888888888888888888887776 333


Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          274 DKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       274 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  333 (401)
                      +. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.++++.|++
T Consensus       180 ~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          180 MY-SGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             CT-TSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            33 677888888888888888888888777 57778888888888888888888887776

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.1e-38  Score=259.70  Aligned_cols=224  Identities=25%  Similarity=0.258  Sum_probs=204.1

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 015738           70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPG  149 (401)
Q Consensus        70 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  149 (401)
                      +..+.+|||.|+..|+.+++++|++.+...                 ++..+..|.||||+|+..|+.+++++|+++|.+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   65 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSL-----------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP   65 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG-----------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhh-----------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC
Confidence            346789999999999999999999987764                 567788999999999999999999999999988


Q ss_pred             CCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHH
Q 015738          150 YPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL  229 (401)
Q Consensus       150 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll  229 (401)
                      + ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.+++|+
T Consensus        66 ~-~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll  126 (231)
T 3aji_A           66 V-NDKDDAGWSPLHIAAS----------------AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK--NRHEIAVMLL  126 (231)
T ss_dssp             S-CCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHH
T ss_pred             C-CCcCCCCCCHHHHHHH----------------cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHH
Confidence            4 4778899999999998                3389999999999999999999999999999998  8889999998


Q ss_pred             HhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccC
Q 015738          230 EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVD  309 (401)
Q Consensus       230 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~  309 (401)
                      +.+.. ++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+..++.+++++|+++|++ ++.+|
T Consensus       127 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~  202 (231)
T 3aji_A          127 EGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDT-EGNTPLHLACDEERVEEAKFLVTQGAS-IYIEN  202 (231)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCC
T ss_pred             HcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCC-CCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCC
Confidence            87654 7888999999999999999999999999999887 44444 799999999999999999999999988 68899


Q ss_pred             CCCCcHHHHHHHhCChhHHHHHHh
Q 015738          310 NRGCNFLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       310 ~~g~t~l~~A~~~~~~~~~~~Ll~  333 (401)
                      ..|.||+|+|+..++.+++++|++
T Consensus       203 ~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          203 KEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             TTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHhhHHHHHHHHHcc
Confidence            999999999999999999999998

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=270.66  Aligned_cols=218  Identities=20%  Similarity=0.238  Sum_probs=169.3

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCC-------CCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHH
Q 015738          119 MVNNEKNTALHEAVSQGNVDVVKILTREDPGY-------PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL  191 (401)
Q Consensus       119 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-------~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~  191 (401)
                      .+|..+.+||+.|+..|+.++|++|++.++..       ....+..+.|||+.|+..+               ....+++
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~---------------~~~~~v~   70 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCA---------------PAQKRLA   70 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhC---------------CHHHHHH
Confidence            45667889999999999999999999988753       2345667889999998632               1345788


Q ss_pred             HHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccc
Q 015738          192 ALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASN  271 (401)
Q Consensus       192 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~  271 (401)
                      .|++.|++++..+..|.||||+|+..  ++.++++.|+..+.. ++..+..|.||+++|+..++.+++++|++.|+++ +
T Consensus        71 ~Ll~~Gadvn~~d~~G~TpLh~A~~~--g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n  146 (269)
T 4b93_B           71 KVPASGLGVNVTSQDGSSPLHVAALH--GRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-N  146 (269)
T ss_dssp             ----CCCCTTCCCTTSCCHHHHHHHT--TCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCC-C
Confidence            99999999999999999999999998  889999998877654 7888899999999999999999999999999887 4


Q ss_pred             cccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCc
Q 015738          272 IADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNT  351 (401)
Q Consensus       272 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  351 (401)
                      ..+. .|.||||+|+..|+.+++++|+++|++ ++.++..|+||||+|+..|+.+++++|++    .|++++.+|..|+|
T Consensus       147 ~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~Gad~~~~d~~G~T  220 (269)
T 4b93_B          147 KKDL-SGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL----HGASVQVLNKRQRT  220 (269)
T ss_dssp             CCCT-TCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCC
T ss_pred             CCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCC
Confidence            4444 789999999999999999999999988 78899999999999999999999999999    89999999999999


Q ss_pred             HHHHHHHhCC
Q 015738          352 PLHVLAAVRP  361 (401)
Q Consensus       352 ~L~~A~~~~~  361 (401)
                      |||+|+++++
T Consensus       221 pL~~A~~~~~  230 (269)
T 4b93_B          221 AVDCAEQNSK  230 (269)
T ss_dssp             SGGGSCTTCH
T ss_pred             HHHHHHhCCc
Confidence            9999987764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-39  Score=276.40  Aligned_cols=250  Identities=23%  Similarity=0.236  Sum_probs=196.6

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 015738           70 NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPG  149 (401)
Q Consensus        70 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  149 (401)
                      +..|.||||.||..|+.++|++|+++|++                  ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~   98 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGAD------------------INYANVDGLTALHQACIDDNVDMVKFLVENGAN   98 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC------------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCC------------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            44678999999999999999999999988                  467788999999999999999999999999988


Q ss_pred             CCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHH
Q 015738          150 YPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLL  229 (401)
Q Consensus       150 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll  229 (401)
                      + ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  +..+.+..++
T Consensus        99 ~-~~~~~~g~tpL~~A~~----------------~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~ll  159 (299)
T 1s70_B           99 I-NQPDNEGWIPLHAAAS----------------CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE--AMEELLQNEV  159 (299)
T ss_dssp             T-TCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH--HHHHHHHHHH
T ss_pred             C-CCCCCCCCcHHHHHHH----------------cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc--chHHHHHHHH
Confidence            5 4778899999999998                3389999999999999999999999999999988  8888888888


Q ss_pred             HhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccC
Q 015738          230 EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVD  309 (401)
Q Consensus       230 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~  309 (401)
                      ...+..++..+..+.++++        ..++.++..+..... .....|.||||.|+..|+.+++++|++.|.+ ++.+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d  229 (299)
T 1s70_B          160 NRQGVDIEAARKEEERIML--------RDARQWLNSGHINDV-RHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKD  229 (299)
T ss_dssp             HHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCC-CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCC
T ss_pred             hhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchh-hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcC
Confidence            8776655544433333333        234445555544422 2333677888888888888888888887776 57778


Q ss_pred             CCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          310 NRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       310 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      ..|+||||+|+..|+.+++++|++    .|++++.+|..|+||||+|++. ..+.++.+++.
T Consensus       230 ~~g~tpL~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          230 YDGWTPLHAAAHWGKEEACRILVE----NLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             CCCCcHHHHHHhcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence            888888888888888888888888    6788888888888888888653 34555555544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.8e-38  Score=257.69  Aligned_cols=215  Identities=23%  Similarity=0.252  Sum_probs=160.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccC
Q 015738          124 KNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHE  203 (401)
Q Consensus       124 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~  203 (401)
                      |.||||+|+..|+.+++++|++.++......+..|.||||+|+.                .++.+++++|++.|++++..
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~~~~~~~~   65 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS----------------FQAHEITSFLLSKMENVNLD   65 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHH----------------TTCHHHHHHHHHTCTTCCGG
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHH----------------cCCHHHHHHHHhcccccccc
Confidence            68999999999999999999999988776788889999999998                33888999999888443221


Q ss_pred             CCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHH
Q 015738          204 GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH  283 (401)
Q Consensus       204 ~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~  283 (401)
                      .                                 ..+..|.||||+|+..|+.+++++|++.|...........|.||||
T Consensus        66 ~---------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~  112 (228)
T 2dzn_A           66 D---------------------------------YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH  112 (228)
T ss_dssp             G---------------------------------CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHH
T ss_pred             c---------------------------------cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHH
Confidence            0                                 1345567777777777777777777777632222222336777777


Q ss_pred             HHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccc-cccccCCCCCCcHHHHHHHhCCh
Q 015738          284 LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLAR-SLIDEGDAEGNTPLHVLAAVRPK  362 (401)
Q Consensus       284 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~  362 (401)
                      .|+..++.+++++|+++|.+ ++.++..|.||||+|+..++.+++++|++    .| ++++.+|..|.||||+|+..++.
T Consensus       113 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~d~~g~t~L~~A~~~~~~  187 (228)
T 2dzn_A          113 LAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCG----LGKSAVNWQDKQGWTPLFHALAEGHG  187 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHT----TTCCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHh----cCcccccCcCCCCCCHHHHHHHcCCH
Confidence            77777777777777777766 56777777788888877777778877777    56 77777777788888888877777


Q ss_pred             hHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          363 EFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       363 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      +++++|+++.|+|++.+|..|+||+++|.+
T Consensus       188 ~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             HHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            777777755577877777788888877743

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7e-38  Score=258.33  Aligned_cols=232  Identities=22%  Similarity=0.279  Sum_probs=164.1

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhc
Q 015738           67 LQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRE  146 (401)
Q Consensus        67 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  146 (401)
                      +..|..|.|||+.|+..|+.+++++|++.|+++                  +..+..|.||||+|+..|+.+++++|+++
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   64 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV------------------RQPDKENVTLLHWAAINNRIDLVKYYISK   64 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCc------------------CCCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            456788899999999999999999999998874                  56677899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHH
Q 015738          147 DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALP  226 (401)
Q Consensus       147 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  226 (401)
                      ++......+..|.|||++|+.                .++.+++++|++.|++++..+..|                   
T Consensus        65 ~~~~~~~~~~~~~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~~~~~~g-------------------  109 (240)
T 3eu9_A           65 GAIVDQLGGDLNSTPLHWATR----------------QGHLSMVVQLMKYGADPSLIDGEG-------------------  109 (240)
T ss_dssp             TCCTTCCBTTTTBCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCCCTTS-------------------
T ss_pred             CCcchhhcCCcCCChhHHHHH----------------cCCHHHHHHHHHcCCCCcccCCCC-------------------
Confidence            988776677778899999988                337888888888887776655444                   


Q ss_pred             HHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCC-HHHHHHhhhcCCCCc
Q 015738          227 KLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD-ARTVERIISGNPKCY  305 (401)
Q Consensus       227 ~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~-~~~~~~Ll~~~~~~~  305 (401)
                                       .||||+|+..|+.+++++|++.|+++ ...+. .|.||||.|+..++ .+++++|++.+.+ +
T Consensus       110 -----------------~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~  169 (240)
T 3eu9_A          110 -----------------CSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVS-V  169 (240)
T ss_dssp             -----------------CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHCCSSTTHHHHHHTTCC-T
T ss_pred             -----------------CCHHHHHHHcCHHHHHHHHHhcCCCc-cccCC-CCCcHHHHHHHhCChHHHHHHHHhcCCC-c
Confidence                             45555555555556666666655554 22222 55566666664443 5666666666655 3


Q ss_pred             cccCC-CCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCCh
Q 015738          306 ELVDN-RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANY  376 (401)
Q Consensus       306 ~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  376 (401)
                      +.++. .|.||||+|+..++.+++++|++    .|++++.++..|.||||+|++.++.+++++|++. +++.
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~-~~~~  236 (240)
T 3eu9_A          170 NLGDKYHKNTALHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHLQEA-RQAK  236 (240)
T ss_dssp             TCCCTTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH-C---
T ss_pred             chhhccCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh-hhcc
Confidence            44444 66677777777777777777776    5666777777777777777777777777777655 4443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-39  Score=278.60  Aligned_cols=296  Identities=11%  Similarity=0.043  Sum_probs=210.1

Q ss_pred             CCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhh
Q 015738           34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF  113 (401)
Q Consensus        34 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  113 (401)
                      +.+|+|..      ..+++++|++    .|++++..+..|.|+++     |+.++|++|+++|+++..........-...
T Consensus        23 ~~~~~~~~------~~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~   87 (327)
T 1sw6_A           23 TAGPIITF------THDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSS   87 (327)
T ss_dssp             --CCEEEC------CTTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------
T ss_pred             cccchhhh------cCchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccc
Confidence            56777765      4577888888    89999999999999988     999999999999988643211000000000


Q ss_pred             HHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHH
Q 015738          114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLAL  193 (401)
Q Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~L  193 (401)
                      . .-........+..|.|+..+..+++++|++.|.++....+..|.||||+|+.                .++.+++++|
T Consensus        88 ~-~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~----------------~g~~~~v~~L  150 (327)
T 1sw6_A           88 N-RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTS----------------IANLELVKHL  150 (327)
T ss_dssp             -----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHH----------------TTCHHHHHHH
T ss_pred             c-ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHH----------------cCCHHHHHHH
Confidence            0 0000111223446888888889999999999998765489999999999998                3489999999


Q ss_pred             HhcCCCCccCCCCCCcHHhHHHhhcccc---cchHHHHHHhhcccccccccCCCcHHHHHHH----cCCHHHHHHHHhcC
Q 015738          194 LENSTSVSHEGPNGKTALHAAAMRSFAV---DTALPKLLEKKKNLIKETDQYGWTPIHYAAY----YGNYRTVNLLLETD  266 (401)
Q Consensus       194 l~~~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~----~~~~~~~~~Ll~~~  266 (401)
                      ++.|++++..+..|.||||+|+..  ++   .+.+..+++.....++..+..|.||||+|+.    .|+.+++++|++.+
T Consensus       151 l~~Gad~n~~d~~g~TpLh~A~~~--g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          151 VKHGSNRLYGDNMGESCLVKAVKS--VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL  228 (327)
T ss_dssp             HHTTCCTTBCCTTCCCHHHHHHHS--SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHh--cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence            999999999999999999999987  66   6888888888877789999999999999999    89999999999876


Q ss_pred             ccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCC
Q 015738          267 QSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGD  346 (401)
Q Consensus       267 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  346 (401)
                      ........   +..            +...+.+.+.+ ++.++..|.||||+|+.      +++|++    .  +++.+|
T Consensus       229 ~~~~~~~~---~~~------------i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~----~--~~n~~d  280 (327)
T 1sw6_A          229 MGWIVKKQ---NRP------------IQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIA----N--MLNAQD  280 (327)
T ss_dssp             HHHHHHGG---GCC------------EEEC-----------------CHHHHHCS------HHHHHH----H--TTTCCC
T ss_pred             HHHHhccc---chH------------HHhhhhcccCC-cccccccCCChhHHHHH------HHHHHH----h--CCCCCC
Confidence            44311100   000            00111233444 67788899999999885      788888    3  588899


Q ss_pred             CCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          347 AEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       347 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      ..|+||||+|+..|+.+++++|++. |+|++.+|..|+||||+|.+
T Consensus       281 ~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          281 SNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHh
Confidence            9999999999999999999999966 99999999999999999854

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=6.8e-39  Score=273.24  Aligned_cols=272  Identities=21%  Similarity=0.163  Sum_probs=222.8

Q ss_pred             HHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q 015738           79 LAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYG  158 (401)
Q Consensus        79 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  158 (401)
                      .++..++.+.++.++..............         ....+..|.||||.|+..|+.+++++|+++|+++ ...+..|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g   73 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRK---------KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDG   73 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCS---------CCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCc---------ccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCC
Confidence            46677788888888877655322211100         1223456789999999999999999999999884 4678899


Q ss_pred             CCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccc
Q 015738          159 KTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKE  238 (401)
Q Consensus       159 ~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~  238 (401)
                      .||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.+++|+..+.. ++.
T Consensus        74 ~t~L~~A~~----------------~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~g~~-~~~  134 (299)
T 1s70_B           74 LTALHQACI----------------DDNVDMVKFLVENGANINQPDNEGWIPLHAAASC--GYLDIAEYLISQGAH-VGA  134 (299)
T ss_dssp             CBHHHHHHH----------------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCC-TTC
T ss_pred             CCHHHHHHH----------------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCC-CCC
Confidence            999999998                4489999999999999999999999999999999  889999999987554 788


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHH
Q 015738          239 TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHY  318 (401)
Q Consensus       239 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  318 (401)
                      .+..|.||||+|+..++.++++.++............ .+.++++        ..+..++..+.......+..|.||||+
T Consensus       135 ~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~  205 (299)
T 1s70_B          135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK-EEERIML--------RDARQWLNSGHINDVRHAKSGGTALHV  205 (299)
T ss_dssp             CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH-HHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhh-hhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHH
Confidence            8999999999999999999999988753322122111 2223332        334556666666566678899999999


Q ss_pred             HHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeecc
Q 015738          319 AMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYG  393 (401)
Q Consensus       319 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  393 (401)
                      |+..|+.+++++|++    .|++++.+|..|.||||+|+..|+.+++++|++. |+|++.+|..|+||+++|.++
T Consensus       206 A~~~g~~~~v~~Ll~----~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          206 AAAKGYTEVLKLLIQ----ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCSG
T ss_pred             HHHCCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHH
Confidence            999999999999999    8999999999999999999999999999999976 999999999999999999654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.5e-37  Score=254.20  Aligned_cols=179  Identities=21%  Similarity=0.258  Sum_probs=162.3

Q ss_pred             CCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccc-cCCCCchHHHHH
Q 015738          207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIA-DKDRKMTALHLA  285 (401)
Q Consensus       207 ~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~g~t~L~~a  285 (401)
                      |.||||.|+..  ++.+.++.++..+.......+..|.||||+|+..|+.+++++|++.+++..... ....|.||||.|
T Consensus         2 g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACME--NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHT--TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHh--CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            68999999998  889999999998888777789999999999999999999999999995543333 445899999999


Q ss_pred             HhcCCHHHHHHhhhcC--CCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChh
Q 015738          286 AGKGDARTVERIISGN--PKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKE  363 (401)
Q Consensus       286 ~~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  363 (401)
                      +..|+.+++++|++.+  .+ ++.++..|.||||+|+..++.+++++|++    .|++++.++..|.||||+|+..|+.+
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHH
Confidence            9999999999999998  55 68889999999999999999999999999    79999999999999999999999999


Q ss_pred             HHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          364 FHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       364 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      ++++|++...++++.+|..|.||||+|..
T Consensus       155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~  183 (228)
T 2dzn_A          155 LIELLCGLGKSAVNWQDKQGWTPLFHALA  183 (228)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhcCcccccCcCCCCCCHHHHHHH
Confidence            99999977449999999999999999943

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.8e-38  Score=265.45  Aligned_cols=227  Identities=15%  Similarity=0.078  Sum_probs=203.0

Q ss_pred             hHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhc
Q 015738          117 IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN  196 (401)
Q Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~  196 (401)
                      ++..|..|.||||+|+..|+.+++++|+++|+++...   .|.||||+|+.                .++.+++++|++.
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~----------------~g~~~~v~~Ll~~   84 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAAT----------------LEDTKIVKILLFS   84 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTT----------------SSSCHHHHHHHHT
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHH----------------cCCHHHHHHHHHC
Confidence            3577889999999999999999999999999885433   49999999998                4489999999999


Q ss_pred             CCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCC-CcHHHHHHHcCCHHHHHHHHhcCccccccccC
Q 015738          197 STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYG-WTPIHYAAYYGNYRTVNLLLETDQSASNIADK  275 (401)
Q Consensus       197 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  275 (401)
                      |++++..+..|.||||+|+..  ++.+.++.|++.+. +++..+..| .||||+|+..|+.+++++|++.|++..   +.
T Consensus        85 ga~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga-~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~  158 (285)
T 3kea_A           85 GLDDSQFDDKGNTALYYAVDS--GNMQTVKLFVKKNW-RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DL  158 (285)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHCG-GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC---CC
T ss_pred             CCCCCCcCCCCCcHHHHHHHc--CCHHHHHHHHhcCC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc---cc
Confidence            999999999999999999999  88999999998854 488888888 899999999999999999999997762   22


Q ss_pred             CCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcH-HHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHH
Q 015738          276 DRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNF-LHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLH  354 (401)
Q Consensus       276 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~  354 (401)
                      ..|.||||.|+..|+.+++++|+++|++ ++.++..|+|| ||+|+..++.+++++|++    .|++++.++       +
T Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~----~gad~~~~~-------~  226 (285)
T 3kea_A          159 AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFK----YDINIYSAN-------L  226 (285)
T ss_dssp             STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTT----SCBCSTTTT-------G
T ss_pred             cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHH----cCCCCCCCC-------h
Confidence            2789999999999999999999999988 78899999998 999999999999999999    899999988       3


Q ss_pred             HHHHhCChhHHHHHHhhcCCChhhhhc
Q 015738          355 VLAAVRPKEFHDVMNRSTQANYDAVNK  381 (401)
Q Consensus       355 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~  381 (401)
                      .|+..++.+++++|++. |++++..+.
T Consensus       227 ~a~~~~~~~iv~~Ll~~-g~~~~~~~~  252 (285)
T 3kea_A          227 ENVLLDDAEIAKMIIEK-HVEYKSDSY  252 (285)
T ss_dssp             GGGTTTCHHHHHHHHHH-HHHHTTCTT
T ss_pred             hhhhcCCHHHHHHHHHc-CCCCCCccc
Confidence            66789999999999977 888775543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=264.68  Aligned_cols=214  Identities=24%  Similarity=0.241  Sum_probs=167.5

Q ss_pred             CCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC--------CccCCCCCCcHHhHHHhhcccccc-
Q 015738          153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS--------VSHEGPNGKTALHAAAMRSFAVDT-  223 (401)
Q Consensus       153 ~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~--------~~~~~~~~~t~l~~a~~~~~~~~~-  223 (401)
                      .+|..+.+||+.|+.                .++.+++++|++.|.+        ++..+..+.+||+.|+..  +... 
T Consensus         6 kkd~~~~~~L~~A~~----------------~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~--~~~~~   67 (269)
T 4b93_B            6 KKDYREVEKLLRAVA----------------DGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKC--APAQK   67 (269)
T ss_dssp             -CCCHHHHHHHHHHH----------------TTCHHHHHHHHTCC-----------------------------------
T ss_pred             ccCccchhHHHHHHH----------------cCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHh--CCHHH
Confidence            456677899999998                4489999999998875        345677889999999877  5444 


Q ss_pred             hHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCC
Q 015738          224 ALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPK  303 (401)
Q Consensus       224 ~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  303 (401)
                      .+..++. .+.+++..+..|.||||+|+..|+.+++++|++.++++ ..... .|.||++.|+..++.+++++|++.+++
T Consensus        68 ~v~~Ll~-~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~  144 (269)
T 4b93_B           68 RLAKVPA-SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNA-DQAVPLHLACQQGHFQVVKCLLDSNAK  144 (269)
T ss_dssp             --------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCC-CCCCccccccccChHHHHHHHHHCCCC
Confidence            4555554 45568999999999999999999999999999999887 33443 789999999999999999999999988


Q ss_pred             CccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccC
Q 015738          304 CYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQN  383 (401)
Q Consensus       304 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  383 (401)
                       ++.+|..|+||||+|+..|+.+++++|++    .|+++|.++..|.||||+|+..|+.+++++|++. |+|++.+|..|
T Consensus       145 -~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G  218 (269)
T 4b93_B          145 -PNKKDLSGNTPLIYACSGGHHELVALLLQ----HGASINASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQ  218 (269)
T ss_dssp             -SCCCCTTCCCHHHHHHHTTCGGGHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTS
T ss_pred             -CCCCCCCCCCHHHHHHHCCCHHHHHHHHH----CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCC
Confidence             68899999999999999999999999999    8999999999999999999999999999999976 99999999999


Q ss_pred             cceeeeeecc
Q 015738          384 VSVRHVFNYG  393 (401)
Q Consensus       384 ~t~l~~a~~~  393 (401)
                      +||||+|.+.
T Consensus       219 ~TpL~~A~~~  228 (269)
T 4b93_B          219 RTAVDCAEQN  228 (269)
T ss_dssp             CCSGGGSCTT
T ss_pred             CCHHHHHHhC
Confidence            9999999653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.5e-37  Score=253.10  Aligned_cols=217  Identities=18%  Similarity=0.186  Sum_probs=198.3

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHH
Q 015738          135 GNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA  214 (401)
Q Consensus       135 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  214 (401)
                      |+.+++++|+++|++.....+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~----------------~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   65 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAAR----------------YSRSDAAKRLLEASADANIQDNMGRTPLHAA   65 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHH----------------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHH----------------cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            678899999999999887778999999999998                4489999999999999999999999999999


Q ss_pred             HhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHH
Q 015738          215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTV  294 (401)
Q Consensus       215 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  294 (401)
                      +..  ++.+.+++|++.+...++..+..|.||||+|+..|+.+++++|++.++++ +..+. .|.||||+|+..++.+++
T Consensus        66 ~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v  141 (223)
T 2f8y_A           66 VSA--DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDD-LGKSALHWAAAVNNVDAA  141 (223)
T ss_dssp             HHT--TCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCT-TSCBHHHHHHHTTCHHHH
T ss_pred             HHc--CCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCC-CCCcHHHHHHHcCCHHHH
Confidence            999  89999999999888778889999999999999999999999999999887 33443 799999999999999999


Q ss_pred             HHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCC
Q 015738          295 ERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQA  374 (401)
Q Consensus       295 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  374 (401)
                      ++|++.+.+ ++.++..|.||||+|+..++.+++++|++    .|++++.+|..|.||||+|+..++.+++++|++. |+
T Consensus       142 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~  215 (223)
T 2f8y_A          142 VVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NL  215 (223)
T ss_dssp             HHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             HHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHH----cCCCCccccccCCCHHHHHHHhcchHHHHHHHHc-CC
Confidence            999999887 68899999999999999999999999999    8999999999999999999999999999999966 77


Q ss_pred             Chh
Q 015738          375 NYD  377 (401)
Q Consensus       375 ~~~  377 (401)
                      ...
T Consensus       216 ~~~  218 (223)
T 2f8y_A          216 VRS  218 (223)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1e-37  Score=262.82  Aligned_cols=244  Identities=16%  Similarity=0.184  Sum_probs=209.3

Q ss_pred             hhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCC
Q 015738           46 ERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN  125 (401)
Q Consensus        46 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  125 (401)
                      .+..++.++|.+    .  +++.+|..|.||||+||..|+.++|++|+++|+++                  +..  +|.
T Consensus        10 ~~~~~v~~lL~~----~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~--~g~   63 (285)
T 3kea_A           10 WKSKQLKSFLSS----K--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK------------------NLL--ENE   63 (285)
T ss_dssp             CCHHHHHHHHHS----T--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG------------------SCC--TTC
T ss_pred             cCHHHHHHHHHh----C--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------------------CCC--CCC
Confidence            445555555544    2  57899999999999999999999999999999985                  233  489


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCC
Q 015738          126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGP  205 (401)
Q Consensus       126 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~  205 (401)
                      ||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+.                .++.+++++|++.|++++..+.
T Consensus        64 t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~----------------~g~~~~v~~Ll~~ga~~~~~~~  126 (285)
T 3kea_A           64 FPLHQAATLEDTKIVKILLFSGLDDS-QFDDKGNTALYYAVD----------------SGNMQTVKLFVKKNWRLMFYGK  126 (285)
T ss_dssp             CHHHHHTTSSSCHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH----------------TTCHHHHHHHHHHCGGGGGCSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHH----------------cCCHHHHHHHHhcCCCCCccCC
Confidence            99999999999999999999999854 678899999999998                3489999999999999999999


Q ss_pred             CC-CcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchH-HH
Q 015738          206 NG-KTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA-LH  283 (401)
Q Consensus       206 ~~-~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~-L~  283 (401)
                      .| .||||+|+..  ++.+.++.|+..+....+.  ..|.||||+|+..|+.+++++|++.|+++ +..+. .|.|| ||
T Consensus       127 ~g~~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~-~g~t~~L~  200 (285)
T 3kea_A          127 TGWKTSFYHAVML--NDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTST-NTNNS-LLFIPDIK  200 (285)
T ss_dssp             SGGGSHHHHHHHT--TCHHHHHHHHTTSCTTCCC--STHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCC-CBCCTTHH
T ss_pred             CCCCCHHHHHHHc--CCHHHHHHHHhCCCccccc--cCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccC-CCCChHHH
Confidence            99 8999999999  8999999999987653221  27899999999999999999999999887 44444 78887 99


Q ss_pred             HHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCC
Q 015738          284 LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN  350 (401)
Q Consensus       284 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  350 (401)
                      +|+..++.+++++|+++|++ ++.++       +.|+..++.+++++|++    .|++++.....+.
T Consensus       201 ~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~----~g~~~~~~~~~~~  255 (285)
T 3kea_A          201 LAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIE----KHVEYKSDSYTKD  255 (285)
T ss_dssp             HHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHH----HHHHHTTCTTTTT
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHH----cCCCCCCccccch
Confidence            99999999999999999988 56666       35677999999999999    8988887665544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=250.24  Aligned_cols=213  Identities=22%  Similarity=0.249  Sum_probs=169.6

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC
Q 015738          120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS  199 (401)
Q Consensus       120 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~  199 (401)
                      .|..|.|||+.|+..|+.+++++|++.|.++ ...+..|.|||++|+.                .++.+++++|++.|.+
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~~~~   67 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAI----------------NNRIDLVKYYISKGAI   67 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH----------------TTCHHHHHHHHHTTCC
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHH----------------hCCHHHHHHHHHcCCc
Confidence            3455666666666666666666666666553 2445556666666665                2255566666555544


Q ss_pred             CccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCc
Q 015738          200 VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKM  279 (401)
Q Consensus       200 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~  279 (401)
                      ++                                   ...+..+.||||+|+..|+.+++++|++.|+++ ...+. .|.
T Consensus        68 ~~-----------------------------------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~  110 (240)
T 3eu9_A           68 VD-----------------------------------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDG-EGC  110 (240)
T ss_dssp             TT-----------------------------------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSC
T ss_pred             ch-----------------------------------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCC
Confidence            32                                   233445789999999999999999999998887 33333 789


Q ss_pred             hHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCC-hhHHHHHHhcCCccccccccCCC-CCCcHHHHHH
Q 015738          280 TALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH-VGQLRNLLENNPLARSLIDEGDA-EGNTPLHVLA  357 (401)
Q Consensus       280 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~  357 (401)
                      ||||.|+..++.+++++|++.+.+ ++.++..|.||||+|+..++ .+++++|++    .+++++..+. .|.||||+|+
T Consensus       111 t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~----~~~~~~~~~~~~g~t~L~~A~  185 (240)
T 3eu9_A          111 SCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLT----FNVSVNLGDKYHKNTALHWAV  185 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHH----TTCCTTCCCTTTCCCHHHHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHh----cCCCcchhhccCCCcHHHHHH
Confidence            999999999999999999999988 68899999999999997766 899999999    8999999997 9999999999


Q ss_pred             HhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          358 AVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       358 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      ..++.+++++|++. |++++.+|..|.||+++|.+
T Consensus       186 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~  219 (240)
T 3eu9_A          186 LAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQ  219 (240)
T ss_dssp             HHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHH
T ss_pred             HcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            99999999999977 99999999999999999943

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-36  Score=246.51  Aligned_cols=213  Identities=27%  Similarity=0.249  Sum_probs=131.3

Q ss_pred             hhhchHHHHHHHHhhCChhhhcc-cCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCC
Q 015738           47 RENVSTKFVEEILEKCPALLLQV-NAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN  125 (401)
Q Consensus        47 ~~~~~~~~l~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  125 (401)
                      |+.+++++|++    .|.+++.. |..|.||||+||..|+.++|++|+++|+++                  +..+..|.
T Consensus         2 g~~~~i~~Ll~----~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~   59 (223)
T 2f8y_A            2 DAPAVISDFIY----QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA------------------NIQDNMGR   59 (223)
T ss_dssp             ---CCEETTEE----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSC
T ss_pred             CcHHHHHHHHH----cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC------------------CCcCCCCC
Confidence            55666666665    46655554 788888888888888888888888888774                  45677888


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCC
Q 015738          126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGP  205 (401)
Q Consensus       126 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~  205 (401)
                      ||||+|+..|+.+++++|+++++......+..|.||||+|+.                .++.+++++|++.|++++..+.
T Consensus        60 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~----------------~~~~~~~~~Ll~~g~~~~~~~~  123 (223)
T 2f8y_A           60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR----------------LAVEGMLEDLINSHADVNAVDD  123 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCBCT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH----------------hCcHHHHHHHHHcCCCCcCcCC
Confidence            888888888888888888888875566777788888888887                2377888888888777766555


Q ss_pred             CCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHH
Q 015738          206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLA  285 (401)
Q Consensus       206 ~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a  285 (401)
                      .|.||||+|+..  ++.+.+++|++.+ .+++..+..|.||||+|+..|+.+++++|++.|+++ ...+. .|.||+++|
T Consensus       124 ~g~t~L~~A~~~--~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~A  198 (223)
T 2f8y_A          124 LGKSALHWAAAV--NNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-DITDH-MDRLPRDIA  198 (223)
T ss_dssp             TSCBHHHHHHHT--TCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHH
T ss_pred             CCCcHHHHHHHc--CCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc-cCCCHHHHH
Confidence            555555555544  4444444444432 223344444444444444444444444444444433 11111 334444444


Q ss_pred             HhcCCHHHHHHhhhcCC
Q 015738          286 AGKGDARTVERIISGNP  302 (401)
Q Consensus       286 ~~~~~~~~~~~Ll~~~~  302 (401)
                      +..++.+++++|+++|.
T Consensus       199 ~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          199 QERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHTTCHHHHHHHHHTTC
T ss_pred             HHhcchHHHHHHHHcCC
Confidence            44444444444444433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-38  Score=273.90  Aligned_cols=248  Identities=11%  Similarity=0.061  Sum_probs=162.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 015738           71 AKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGY  150 (401)
Q Consensus        71 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  150 (401)
                      ..+.+|++    ....++|++|+++|++                  ++..+..|.|+++     |+.+++++|+++|.+.
T Consensus        21 ~~~~~~~~----~~~~dlv~~ll~~ga~------------------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~   73 (327)
T 1sw6_A           21 DRTAGPII----TFTHDLTSDFLSSPLK------------------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFP   73 (327)
T ss_dssp             ----CCEE----ECCTTCCCSTTTSSCC------------------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-
T ss_pred             cccccchh----hhcCchHHHHhhCCcc------------------cccCCCCCCcccC-----chhHHHHHHHHhccCC
Confidence            34455555    4667889999999998                  4677888999987     9999999999998763


Q ss_pred             CCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHH
Q 015738          151 PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLE  230 (401)
Q Consensus       151 ~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~  230 (401)
                             +.+++++|+....                ..          .-........+..|.++..  ...+ +..++.
T Consensus        74 -------~~~~~~~a~~~~~----------------~~----------~~~~~~~~~~~~~~~a~~~--~~~~-~~~~l~  117 (327)
T 1sw6_A           74 -------EIQEMPTSLNNDS----------------SN----------RNSEGGSSNQQQQHVSFDS--LLQE-VNDAFP  117 (327)
T ss_dssp             ---------------------------------------------------------------CHHH--HHHH-HHHHCT
T ss_pred             -------ccccchHhhhccc----------------cc----------ccccccCCccchhHHHHHh--hHHH-HHHHHH
Confidence                   2345666654100                00          0000011122344555554  3333 444444


Q ss_pred             hhcccccc-cccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCC---HHHHHHhhhcCCCCcc
Q 015738          231 KKKNLIKE-TDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGD---ARTVERIISGNPKCYE  306 (401)
Q Consensus       231 ~~~~~~~~-~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~~~~~~~  306 (401)
                      ..+.+++. .+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+..|+   .++++.|++.+...++
T Consensus       118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~  195 (327)
T 1sw6_A          118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  195 (327)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence            55556777 7888999999999999999999999999887 44444 78899999999888   6777778777755578


Q ss_pred             ccCCCCCcHHHHHHH----hCChhHHHHHHhcCC----------------ccccccccCCCCCCcHHHHHHHhCChhHHH
Q 015738          307 LVDNRGCNFLHYAMV----SFHVGQLRNLLENNP----------------LARSLIDEGDAEGNTPLHVLAAVRPKEFHD  366 (401)
Q Consensus       307 ~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~~~----------------~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  366 (401)
                      .+|..|+||||+|+.    .++.+++++|++...                ..|++++.++..|.||||+|+.      ++
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~  269 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LK  269 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HH
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HH
Confidence            899999999999998    889999999998321                1289999999999999999985      88


Q ss_pred             HHHhhcCCChhhhhccCcceeeeeec
Q 015738          367 VMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       367 ~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      +|+..   +++.+|..|.||||+|.+
T Consensus       270 ~Ll~~---~~n~~d~~G~TpLh~A~~  292 (327)
T 1sw6_A          270 WIIAN---MLNAQDSNGDTCLNIAAR  292 (327)
T ss_dssp             HHHHH---TTTCCCTTSCCHHHHHHH
T ss_pred             HHHHh---CCCCCCCCCCCHHHHHHH
Confidence            88866   689999999999999943

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=9.1e-35  Score=238.16  Aligned_cols=203  Identities=24%  Similarity=0.252  Sum_probs=146.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh-hhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIER-AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGY  150 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  150 (401)
                      .|+||||+||..|+.++|++|++. |++                  ++..|..|.||||+|+..|+.+++++|++++++.
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~   63 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE------------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL   63 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC------------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchh
Confidence            589999999999999999999998 776                  4677889999999999999999999999998874


Q ss_pred             C----CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHH
Q 015738          151 P----YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALP  226 (401)
Q Consensus       151 ~----~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  226 (401)
                      .    ...+..|.||||+|+.                .++.+++++|++.|++++..+...  .+.              
T Consensus        64 ~~~~~~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~~~~~~~--~~~--------------  111 (232)
T 2rfa_A           64 VFEPMTSELYEGQTALHIAVI----------------NQNVNLVRALLARGASVSARATGS--VFH--------------  111 (232)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHH----------------TTCHHHHHHHHHTTCCTTCCCCSG--GGS--------------
T ss_pred             ccccccccCCCCcCHHHHHHH----------------cCCHHHHHHHHhCCCCCCcccCCc--cee--------------
Confidence            2    4567789999999998                348999999999999988765432  110              


Q ss_pred             HHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHH----HHhhhcCC
Q 015738          227 KLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTV----ERIISGNP  302 (401)
Q Consensus       227 ~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~----~~Ll~~~~  302 (401)
                             ...+..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+..++.+++    ++|++.++
T Consensus       112 -------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~-~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          112 -------YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDS-LGNTVLHILILQPNKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             -------CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred             -------ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence                   012334556667777777777777777777666655 22332 566666666666666655    66666655


Q ss_pred             CCc-----cccCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          303 KCY-----ELVDNRGCNFLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       303 ~~~-----~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  333 (401)
                      +..     +.+|..|+||||+|+..|+.+++++|++
T Consensus       183 ~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             SCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             chhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            422     3455556666666666666666666665

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.5e-36  Score=245.13  Aligned_cols=215  Identities=19%  Similarity=0.190  Sum_probs=167.2

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHh
Q 015738          119 MVNNEKNTALHEAVSQGNVDVVKILTREDPG---YPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLE  195 (401)
Q Consensus       119 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~  195 (401)
                      ..|.+|.||||+|+..|+.+++++|++.+..   .....+..|.||||+|+.                .++.+++++|++
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~   66 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI----------------TNQPEIAEALLG   66 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHH----------------TTCHHHHHCCCS
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHH----------------cCCHHHHHHHHH
Confidence            4577899999999999999999999987653   245667778888888887                337888888888


Q ss_pred             cCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcccc----c
Q 015738          196 NSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS----N  271 (401)
Q Consensus       196 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~----~  271 (401)
                      .|++++..+..                                    |.||||+|+..|+.+++++|++.+++..    .
T Consensus        67 ~g~~~~~~~~~------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  110 (236)
T 1ikn_D           67 AGCDPELRDFR------------------------------------GNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL  110 (236)
T ss_dssp             CCCCSCCCCTT------------------------------------CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGG
T ss_pred             cCCCCCCcCCC------------------------------------CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHh
Confidence            87777655444                                    5555555555666666666666654321    1


Q ss_pred             cccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCC-CCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCC
Q 015738          272 IADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDN-RGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN  350 (401)
Q Consensus       272 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  350 (401)
                      ......|.||||+|+..|+.+++++|++.|++ ++.++. .|+||||+|+..++.+++++|++    .|++++.+|..|.
T Consensus       111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~  185 (236)
T 1ikn_D          111 KATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLK----CGADVNRVTYQGY  185 (236)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHT----TTCCSCCCCTTCC
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcccCCCC
Confidence            12234688999999999999999999999888 577776 89999999999999999999999    7999999999999


Q ss_pred             cHHHHHHHhCChhHHHHHHhhcCCChh--hhhccCcceeeeee
Q 015738          351 TPLHVLAAVRPKEFHDVMNRSTQANYD--AVNKQNVSVRHVFN  391 (401)
Q Consensus       351 t~L~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~t~l~~a~  391 (401)
                      ||||+|+..++.+++++|++. |++..  .++..|.||.+.+.
T Consensus       186 tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          186 SPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             CGGGGCTTSSCHHHHHHHHTT-SCGGGSSCCCCCTTTCCCCC-
T ss_pred             CHHHHHHccCchHHHHHHHHc-chhhhhcCCccchHHHHhhhc
Confidence            999999999999999999966 99877  88999999999883

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.2e-34  Score=243.28  Aligned_cols=237  Identities=15%  Similarity=0.088  Sum_probs=160.9

Q ss_pred             ChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHc---CCHHH
Q 015738           63 PALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQ---GNVDV  139 (401)
Q Consensus        63 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~  139 (401)
                      ++..+..|..|.||||+||..|+.++|+.|++.+.........          .....+..|.||||+|+..   |+.++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------~~~~~~~~g~tpL~~A~~~~~~g~~~~   72 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTD----------SEFKDPETGKTCLLKAMLNLHNGQNDT   72 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTS----------GGGSCTTTCCCHHHHHHHSCBTTBCHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCC----------cccccCcCCCCHHHHHHHHHhcCChHH
Confidence            4455678999999999999999999999999987653211100          0113478999999999987   99999


Q ss_pred             HHHHHhcCCCCC----------CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCc
Q 015738          140 VKILTREDPGYP----------YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKT  209 (401)
Q Consensus       140 ~~~Ll~~~~~~~----------~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  209 (401)
                      +++|+++|++..          ...+..|.||||+|+.                .++.+++++|++.|++++..+..+..
T Consensus        73 v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~----------------~g~~~~v~~Ll~~ga~~~~~~~~~~~  136 (273)
T 2pnn_A           73 IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE----------------RRNMTLVTLLVENGADVQAAANGDFF  136 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHH----------------TTCHHHHHHHHHTTCCTTCCBCSGGG
T ss_pred             HHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHH----------------cCCHHHHHHHHHCCCCcCcccccccc
Confidence            999999875421          1234567777777776                33677777777777777665543200


Q ss_pred             HHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 015738          210 ALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKG  289 (401)
Q Consensus       210 ~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~  289 (401)
                                .                                            . .+  .......|.||||+|+..|
T Consensus       137 ----------~--------------------------------------------~-~~--~~~~~~~g~tpL~~A~~~g  159 (273)
T 2pnn_A          137 ----------K--------------------------------------------K-TK--GRPGFYFGELPLSLAACTN  159 (273)
T ss_dssp             ----------S--------------------------------------------S-CS--SSCCCCSCBSHHHHHHHTT
T ss_pred             ----------c--------------------------------------------c-cc--ccccccCCCCHHHHHHHcC
Confidence                      0                                            0 00  0011125778888888888


Q ss_pred             CHHHHHHhhh---cCCCCccccCCCCCcHHHHHHHhCC---------hhHHHHHHhcCCccccccc-------cCCCCCC
Q 015738          290 DARTVERIIS---GNPKCYELVDNRGCNFLHYAMVSFH---------VGQLRNLLENNPLARSLID-------EGDAEGN  350 (401)
Q Consensus       290 ~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~~~-------~~~~~g~  350 (401)
                      +.+++++|++   .|.+ ++.+|..|+||||+|+..++         .+++++|++    .|++++       .+|..|.
T Consensus       160 ~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~----~ga~~n~~~~~~~~~d~~g~  234 (273)
T 2pnn_A          160 QLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI----LGAKLHPTLKLEEITNRKGL  234 (273)
T ss_dssp             CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH----HHHHHCTTCCGGGCCCTTSC
T ss_pred             CHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH----hhhhcccccccccccCCCCC
Confidence            8888888888   6666 67888899999999998887         789999999    888886       4899999


Q ss_pred             cHHHHHHHhCChhHHHHHHhhcCC-ChhhhhccCcceee
Q 015738          351 TPLHVLAAVRPKEFHDVMNRSTQA-NYDAVNKQNVSVRH  388 (401)
Q Consensus       351 t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~  388 (401)
                      ||||+|+..|+.+++++|++. |+ |+......+.+|-+
T Consensus       235 TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          235 TPLALAASSGKIGVLAYILQR-EIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHH-HTC--------------
T ss_pred             CHHHHHHHhChHHHHHHHHHC-CCCCchhhhhhhhhccC
Confidence            999999999999999999977 77 88888888877643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.5e-35  Score=243.30  Aligned_cols=182  Identities=19%  Similarity=0.245  Sum_probs=159.5

Q ss_pred             cCCCCCCcHHhHHHhhcccccchHHHHHHhhcc---cccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCC
Q 015738          202 HEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN---LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK  278 (401)
Q Consensus       202 ~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~---~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g  278 (401)
                      ..+..|.||||+|+..  ++.+.++.++.....   .++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|
T Consensus         3 ~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g   78 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIH--EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDF-RG   78 (236)
T ss_dssp             ----CCCCTTHHHHHT--TCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT-TC
T ss_pred             cCCCCCCchhHHHHHc--CChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CC
Confidence            3567899999999988  888888888876653   57888999999999999999999999999999887 44443 89


Q ss_pred             chHHHHHHhcCCHHHHHHhhhcCCC-----CccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCC-CCCcH
Q 015738          279 MTALHLAAGKGDARTVERIISGNPK-----CYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDA-EGNTP  352 (401)
Q Consensus       279 ~t~L~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~  352 (401)
                      .||||+|+..|+.+++++|++.+..     ..+..+..|.||||+|+..++.+++++|++    .|++++.++. .|.||
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~tp  154 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS----LGADVNAQEPCNGRTA  154 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCCH
Confidence            9999999999999999999999864     256788899999999999999999999999    8999999997 99999


Q ss_pred             HHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          353 LHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       353 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      ||+|+..|+.+++++|++. |++++.+|..|.||+++|..
T Consensus       155 L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~  193 (236)
T 1ikn_D          155 LHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWG  193 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTT
T ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHc
Confidence            9999999999999999976 99999999999999999943

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.3e-33  Score=234.84  Aligned_cols=213  Identities=18%  Similarity=0.177  Sum_probs=175.2

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHhcCCCCCC---CCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHh
Q 015738          123 EKNTALHEAVSQGNVD----VVKILTREDPGYPY---SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLE  195 (401)
Q Consensus       123 ~g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~---~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~  195 (401)
                      .|+||||+|+..|+.+    ++++|++.+.++..   ..+..|.||||+|+..             ...++.+++++|++
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~-------------~~~g~~~~v~~Ll~   67 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLN-------------LQDGVNACIMPLLQ   67 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHT-------------CBTTBCTTHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHc-------------cccchHHHHHHHHh
Confidence            3789999999999997    66777788888653   3788999999999982             01148899999999


Q ss_pred             cCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccC
Q 015738          196 NSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADK  275 (401)
Q Consensus       196 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  275 (401)
                      .|++++..+..                      +   .......+..|.||||+|+..|+.+++++|++.|+++. ..+.
T Consensus        68 ~g~~~~~~~~~----------------------~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~  121 (256)
T 2etb_A           68 IDKDSGNPKPL----------------------V---NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRAC  121 (256)
T ss_dssp             HHHHTTCSSCG----------------------G---GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCC
T ss_pred             cCCcccchhhh----------------------c---ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccc
Confidence            88877543310                      0   00123345679999999999999999999999998873 3333


Q ss_pred             C------------CCchHHHHHHhcCCHHHHHHhhh---cCCCCccccCCCCCcHHHHHHH--hCChh-------HHHHH
Q 015738          276 D------------RKMTALHLAAGKGDARTVERIIS---GNPKCYELVDNRGCNFLHYAMV--SFHVG-------QLRNL  331 (401)
Q Consensus       276 ~------------~g~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~L  331 (401)
                      .            .|.||||+|+..|+.+++++|++   .|.+ ++.+|..|+||||+|+.  .++.+       ++++|
T Consensus       122 ~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~L  200 (256)
T 2etb_A          122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL  200 (256)
T ss_dssp             SGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHH
Confidence            1            29999999999999999999999   7777 78999999999999999  78888       99999


Q ss_pred             HhcCCcccccc-------ccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhh
Q 015738          332 LENNPLARSLI-------DEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVN  380 (401)
Q Consensus       332 l~~~~~~~~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  380 (401)
                      ++    .|+++       +.+|..|.||||+|+..|+.+++++|+++ |++.....
T Consensus       201 l~----~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~  251 (256)
T 2etb_A          201 LQ----MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR-EFSGAAAH  251 (256)
T ss_dssp             HH----HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHHHHH
T ss_pred             HH----cCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCcc
Confidence            99    89999       99999999999999999999999999977 76655443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.5e-34  Score=238.20  Aligned_cols=210  Identities=22%  Similarity=0.191  Sum_probs=169.1

Q ss_pred             cCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhc----ccCCCCcHHHHHHHc---CCHHHHHHHHHhhhhhccCCCC
Q 015738           33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQ----VNAKGDTPLHLAAKF---GHFEIVRVLIERAKLAQRGDEE  105 (401)
Q Consensus        33 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~  105 (401)
                      .|+||||+|  +..|+.+.++.+++.+...+.+++.    .|..|.||||+||..   |+.++|++|+++|++.+.....
T Consensus         1 ~G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSV--VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHH--HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            378999999  9999999887777777778899998    899999999999999   9999999999999986432210


Q ss_pred             CCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-------------CCCHHHHHHhcCCch
Q 015738          106 PESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNY-------------GKTPLYMAAEYENRS  172 (401)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~  172 (401)
                             +.......|..|.||||+|+..|+.+++++|+++|+++. ..+..             |.||||+|+.     
T Consensus        79 -------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~-----  145 (256)
T 2etb_A           79 -------VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAAC-----  145 (256)
T ss_dssp             -------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHH-----
T ss_pred             -------cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHH-----
Confidence                   000012345679999999999999999999999999865 44443             9999999998     


Q ss_pred             hHHHhhhhhccCCCHHHHHHHHh---cCCCCccCCCCCCcHHhHHHhhcccccc-------hHHHHHHhhcccc------
Q 015738          173 DMLRGLLENRTSASFDMVLALLE---NSTSVSHEGPNGKTALHAAAMRSFAVDT-------ALPKLLEKKKNLI------  236 (401)
Q Consensus       173 ~~~~~l~~~~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~~~~~-------~~~~ll~~~~~~~------  236 (401)
                                 .++.+++++|++   .|++++..+..|.||||+|+....+..+       +++.|++.+.. +      
T Consensus       146 -----------~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~-~~~~~~~  213 (256)
T 2etb_A          146 -----------TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR-LCPTVQL  213 (256)
T ss_dssp             -----------TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCCG
T ss_pred             -----------cCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC-ccccccc
Confidence                       348899999999   8999999999999999999984225555       66666666544 5      


Q ss_pred             -cccccCCCcHHHHHHHcCCHHHHHHHHhcCccc
Q 015738          237 -KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSA  269 (401)
Q Consensus       237 -~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  269 (401)
                       +..+..|.||||+|+..|+.+++++|+++|+..
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence             677788888888888888888888888877654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.5e-32  Score=219.87  Aligned_cols=193  Identities=18%  Similarity=0.205  Sum_probs=135.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCc
Q 015738          122 NEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVS  201 (401)
Q Consensus       122 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~  201 (401)
                      ..+.||||.|+..|+.+++++|++.++......+..|.||||+|+.                .++.+++++|++.|++++
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~   66 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVH----------------NNDIEIAKALIDRGADIN   66 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCTT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH----------------cCCHHHHHHHHHcCCCCC
Confidence            4678999999999999999999988875566778888899999887                337888888888888776


Q ss_pred             cCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchH
Q 015738          202 HEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA  281 (401)
Q Consensus       202 ~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~  281 (401)
                      ..+..|.|||                                    |+|+..|+.+++++|++.+.......+. .|.||
T Consensus        67 ~~~~~g~t~l------------------------------------~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~  109 (201)
T 3hra_A           67 LQNSISDSPY------------------------------------LYAGAQGRTEILAYMLKHATPDLNKHNR-YGGNA  109 (201)
T ss_dssp             CCCTTSCCHH------------------------------------HHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCS
T ss_pred             CCCCCCCCHH------------------------------------HHHHHcCCHHHHHHHHhccCcccccccC-CCCcH
Confidence            6655555554                                    5555555555555555333322122222 55566


Q ss_pred             HHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCC-----hhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH-----VGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       282 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      ||.|+..++.+++++|++.+...++.+|..|+||||+|+..++     .+++++|++    .|++++.+|..|.||||+|
T Consensus       110 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A  185 (201)
T 3hra_A          110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME----NGADQSIKDNSGRTAMDYA  185 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH----CCCCCCccCCCCCCHHHHH
Confidence            6666666666666666666644466677777777777777776     777777777    6777777777777777777


Q ss_pred             HHhCChhHHHHHHhh
Q 015738          357 AAVRPKEFHDVMNRS  371 (401)
Q Consensus       357 ~~~~~~~~~~~Ll~~  371 (401)
                      +..|+.+++++|++.
T Consensus       186 ~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          186 NQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHTCHHHHHHHHTC
T ss_pred             HHcCCHhHHHHHHhc
Confidence            777777777777754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=9.5e-35  Score=223.28  Aligned_cols=160  Identities=26%  Similarity=0.358  Sum_probs=145.1

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA   81 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~   81 (401)
                      .++|+.||+.|+.++|++|+++|++.+..+..|.||||+|  +..++.+++++|++    .|++++.+|..|+||||+||
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHH
Confidence            3679999999999999999999999988999999999999  99999999999998    79999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 015738           82 KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTP  161 (401)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  161 (401)
                      ..|+.++|++|+++|+++                  +.+|..|.||||+|+..|+.+++++|+++|+++ ...|..|.||
T Consensus        79 ~~g~~~~v~~Ll~~gadv------------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~Tp  139 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGADV------------------NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTP  139 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             HcCCHHHHHHHHHCcCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCH
Confidence            999999999999999984                  677889999999999999999999999999985 4788999999


Q ss_pred             HHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCcc
Q 015738          162 LYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSH  202 (401)
Q Consensus       162 l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~  202 (401)
                      |++|+.                .++.+++++|+++|++++.
T Consensus       140 L~~A~~----------------~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          140 LDLARE----------------HGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHH----------------TTCHHHHHHHHTC------
T ss_pred             HHHHHH----------------cCCHHHHHHHHHCCCCcCC
Confidence            999998                3489999999999999864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2e-33  Score=235.87  Aligned_cols=161  Identities=21%  Similarity=0.269  Sum_probs=123.1

Q ss_pred             HHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhh----cccCCCCcHHHHHHHc---CCHHHHHHHHHhhhhh
Q 015738           27 RLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL----QVNAKGDTPLHLAAKF---GHFEIVRVLIERAKLA   99 (401)
Q Consensus        27 ~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~   99 (401)
                      ....+..|.|+||+|  +..|+.++++.|++.....+.+++    ..+..|.||||+||..   |+.++|++|+++|++.
T Consensus         6 ~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -----CCCHHHHHHH--HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             CCCCCcccchHHHHH--HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            344566799999999  999999999999987666676665    4588999999999987   9999999999999874


Q ss_pred             ccCCCCCCCCchhhHHHhH----hccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC--------------CCCCH
Q 015738          100 QRGDEEPESGVEPFRQMIR----MVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANN--------------YGKTP  161 (401)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~----~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~~~t~  161 (401)
                      ..           ....++    ..|..|.||||+|+..|+.+++++|+++|+++. ..+.              .|.||
T Consensus        84 ~~-----------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tp  151 (273)
T 2pnn_A           84 DS-----------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGELP  151 (273)
T ss_dssp             TC-----------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCBSH
T ss_pred             cc-----------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCCCH
Confidence            21           111122    256789999999999999999999999998865 4443              57777


Q ss_pred             HHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHh---cCCCCccCCCCCCcHHhHHHhh
Q 015738          162 LYMAAEYENRSDMLRGLLENRTSASFDMVLALLE---NSTSVSHEGPNGKTALHAAAMR  217 (401)
Q Consensus       162 l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~a~~~  217 (401)
                      ||+|+.                .++.+++++|++   .|++++..+..|.||||+|+..
T Consensus       152 L~~A~~----------------~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~  194 (273)
T 2pnn_A          152 LSLAAC----------------TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV  194 (273)
T ss_dssp             HHHHHH----------------TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHH----------------cCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc
Confidence            777776                336777777777   7777777777777777777765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.9e-32  Score=218.10  Aligned_cols=179  Identities=17%  Similarity=0.181  Sum_probs=164.8

Q ss_pred             CCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHH
Q 015738          205 PNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHL  284 (401)
Q Consensus       205 ~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~  284 (401)
                      ..+.|||+.|+..  ++.+.+..++..++.+++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||.
T Consensus         3 ~~~~~~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~   78 (201)
T 3hra_A            3 TYEVGALLEAANQ--RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNS-ISDSPYLY   78 (201)
T ss_dssp             CCCTTHHHHHHHT--TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHH
T ss_pred             cccccHHHHHHHh--ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHH
Confidence            4578999999999  89999999999988778999999999999999999999999999999887 33443 78999999


Q ss_pred             HHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccc-cccccCCCCCCcHHHHHHHhCC--
Q 015738          285 AAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLAR-SLIDEGDAEGNTPLHVLAAVRP--  361 (401)
Q Consensus       285 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~--  361 (401)
                      |+..|+.+++++|++.+...++.++..|.||||+|+..++.+++++|++    .| ++++.+|..|.||||+|+..++  
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~  154 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGN  154 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCS
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccch
Confidence            9999999999999977776688999999999999999999999999999    66 8999999999999999999998  


Q ss_pred             ---hhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          362 ---KEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       362 ---~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                         .+++++|++. |++++.+|..|.||+++|.+
T Consensus       155 ~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~  187 (201)
T 3hra_A          155 QLYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQ  187 (201)
T ss_dssp             HHHHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             hhHHHHHHHHHHC-CCCCCccCCCCCCHHHHHHH
Confidence               8999999976 99999999999999999943

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.5e-32  Score=211.08  Aligned_cols=160  Identities=25%  Similarity=0.319  Sum_probs=141.2

Q ss_pred             cHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhc
Q 015738          209 TALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGK  288 (401)
Q Consensus       209 t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~  288 (401)
                      ++|+.|+..  ++.+.++.|++.+. +++..|..|.||||+|+..++.+++++|++.|+++ +..+. .|.||||+|+..
T Consensus         6 ~~L~~Aa~~--G~~~~v~~Ll~~Ga-dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~-~g~TpLh~A~~~   80 (169)
T 4gpm_A            6 KRLIEAAEN--GNKDRVKDLIENGA-DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDS-DGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHT
T ss_pred             HHHHHHHHc--CCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhcc-CCCCHHHHHHHc
Confidence            468899988  89999999998764 48899999999999999999999999999999987 44444 799999999999


Q ss_pred             CCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHH
Q 015738          289 GDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVM  368 (401)
Q Consensus       289 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  368 (401)
                      |+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|
T Consensus        81 g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~g~~~iv~~L  155 (169)
T 4gpm_A           81 GHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLIS----KGADVNTSDSDGRTPLDLAREHGNEEVVKLL  155 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999988 78999999999999999999999999999    8999999999999999999999999999999


Q ss_pred             HhhcCCChhhh
Q 015738          369 NRSTQANYDAV  379 (401)
Q Consensus       369 l~~~~~~~~~~  379 (401)
                      ++. ||+++..
T Consensus       156 l~~-GA~ie~~  165 (169)
T 4gpm_A          156 EKQ-GGWLEHH  165 (169)
T ss_dssp             HTC--------
T ss_pred             HHC-CCCcCCC
Confidence            966 9998753

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=1.1e-31  Score=223.62  Aligned_cols=201  Identities=20%  Similarity=0.204  Sum_probs=169.3

Q ss_pred             CCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHH----HHHHHHhcCCCCccCC----CCCCcHHhHHHhh-cccccchH
Q 015738          155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD----MVLALLENSTSVSHEG----PNGKTALHAAAMR-SFAVDTAL  225 (401)
Q Consensus       155 ~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~----~~~~Ll~~~~~~~~~~----~~~~t~l~~a~~~-~~~~~~~~  225 (401)
                      +..++++|+.|+..+                +.+    +++++++.|++++..+    ..|.||||+|+.. ..++.+.+
T Consensus         2 ~~~~~~~L~~A~~~g----------------~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v   65 (260)
T 3jxi_A            2 KVFNRPILFDIVSRG----------------SPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI   65 (260)
T ss_dssp             CCCCHHHHHHHHHHT----------------CGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHH
T ss_pred             ccchHHHHHHHHHhC----------------CHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHH
Confidence            456889999999844                555    5666667999998765    6799999999932 22889999


Q ss_pred             HHHHHhhcc----------cccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccC------------CCCchHHH
Q 015738          226 PKLLEKKKN----------LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADK------------DRKMTALH  283 (401)
Q Consensus       226 ~~ll~~~~~----------~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~------------~~g~t~L~  283 (401)
                      +.|+..+..          .+...+..|.||||+|+..|+.+++++|++.|+++......            ..|.||||
T Consensus        66 ~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~  145 (260)
T 3jxi_A           66 PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS  145 (260)
T ss_dssp             HHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHH
T ss_pred             HHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHH
Confidence            999987643          23444558999999999999999999999999988433321            37999999


Q ss_pred             HHHhcCCHHHHHHhhh---cCCCCccccCCCCCcHHHHHHHhCC---------hhHHHHHHhcCCcccccc-------cc
Q 015738          284 LAAGKGDARTVERIIS---GNPKCYELVDNRGCNFLHYAMVSFH---------VGQLRNLLENNPLARSLI-------DE  344 (401)
Q Consensus       284 ~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~~-------~~  344 (401)
                      +|+..|+.+++++|++   .|.+ ++.+|..|+||||+|+..++         .+++++|++    .|+++       +.
T Consensus       146 ~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~----~ga~~~~~~~~~~~  220 (260)
T 3jxi_A          146 LAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI----KCAKLFPDTNLEAL  220 (260)
T ss_dssp             HHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH----HHHHHCTTCCGGGC
T ss_pred             HHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH----hCcccccccchhhc
Confidence            9999999999999999   7777 78999999999999999887         799999999    89999       77


Q ss_pred             CCCCCCcHHHHHHHhCChhHHHHHHhhcCCChh
Q 015738          345 GDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYD  377 (401)
Q Consensus       345 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  377 (401)
                      +|..|.||||+|+..|+.+++++|+++ |++..
T Consensus       221 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~  252 (260)
T 3jxi_A          221 LNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADA  252 (260)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHh-CCCcc
Confidence            999999999999999999999999977 65544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=1.4e-32  Score=229.09  Aligned_cols=210  Identities=20%  Similarity=0.201  Sum_probs=164.6

Q ss_pred             cCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhccc----CCCCcHHHHHH---HcCCHHHHHHHHHhhhhhccCCCC
Q 015738           33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN----AKGDTPLHLAA---KFGHFEIVRVLIERAKLAQRGDEE  105 (401)
Q Consensus        33 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~  105 (401)
                      .|.++||.|  ++.|+.+.++.|++.+...+.+++..+    ..|.||||+|+   ..|+.++|++|++.|++...... 
T Consensus         4 ~~~~~L~~A--~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-   80 (260)
T 3jxi_A            4 FNRPILFDI--VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE-   80 (260)
T ss_dssp             CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH-
T ss_pred             chHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh-
Confidence            478889999  999999988888887777788777665    77999999999   77999999999999987421100 


Q ss_pred             CCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--------------CCCCCHHHHHHhcCCc
Q 015738          106 PESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSAN--------------NYGKTPLYMAAEYENR  171 (401)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~  171 (401)
                            .....+...|..|.||||+|+..|+.+++++|+++|+++. ..+              ..|.||||+|+.    
T Consensus        81 ------~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~----  149 (260)
T 3jxi_A           81 ------FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAAC----  149 (260)
T ss_dssp             ------HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHH----
T ss_pred             ------hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHH----
Confidence                  0001123445589999999999999999999999999865 444              579999999998    


Q ss_pred             hhHHHhhhhhccCCCHHHHHHHHh---cCCCCccCCCCCCcHHhHHHhhcccc-------cchHHHHHHhhcccc-----
Q 015738          172 SDMLRGLLENRTSASFDMVLALLE---NSTSVSHEGPNGKTALHAAAMRSFAV-------DTALPKLLEKKKNLI-----  236 (401)
Q Consensus       172 ~~~~~~l~~~~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~~~-------~~~~~~ll~~~~~~~-----  236 (401)
                                  .++.+++++|++   .|++++..+..|.||||+|+..+.+.       .++++.|+..+.. +     
T Consensus       150 ------------~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~  216 (260)
T 3jxi_A          150 ------------TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK-LFPDTN  216 (260)
T ss_dssp             ------------TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH-HCTTCC
T ss_pred             ------------cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc-cccccc
Confidence                        348999999999   89999999999999999999762111       3566666665544 4     


Q ss_pred             --cccccCCCcHHHHHHHcCCHHHHHHHHhcCccc
Q 015738          237 --KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSA  269 (401)
Q Consensus       237 --~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  269 (401)
                        +..+..|.||||+|+..|+.+++++|+++|+..
T Consensus       217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence              567778888888888888888888888877665

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.7e-31  Score=205.37  Aligned_cols=170  Identities=24%  Similarity=0.330  Sum_probs=151.7

Q ss_pred             CCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHH
Q 015738          207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA  286 (401)
Q Consensus       207 ~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~  286 (401)
                      +.+|||.|+..  ++.+.+++++..+...++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+
T Consensus         2 ~~~~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~   77 (172)
T 3v30_A            2 DSLSIHQLAAQ--GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAK-ERESALSLAS   77 (172)
T ss_dssp             --CCHHHHHHT--TCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TCCCHHHHHH
T ss_pred             chhhHHHHHHc--CCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcc-cCCCHHHHHH
Confidence            46899999999  99999999999988888999999999999999999999999999999887 33443 7899999999


Q ss_pred             hcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHH
Q 015738          287 GKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHD  366 (401)
Q Consensus       287 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  366 (401)
                      ..++.+++++|++++.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|.||||+|+..++.++++
T Consensus        78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLA----RGADLTTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             HTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHhCcHHHHH
Confidence            99999999999999988 68899999999999999999999999999    89999999999999999999999999999


Q ss_pred             HHHhhcCCChhhhhccCcce
Q 015738          367 VMNRSTQANYDAVNKQNVSV  386 (401)
Q Consensus       367 ~Ll~~~~~~~~~~~~~g~t~  386 (401)
                      +|++. |+++..++..|.||
T Consensus       153 ~L~~~-~~~~~~~~~~~~~p  171 (172)
T 3v30_A          153 VIENH-ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHH-HHHHSCC-------
T ss_pred             HHHHH-HHHHhcccCCCCCC
Confidence            99976 99999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=4.1e-34  Score=247.31  Aligned_cols=260  Identities=13%  Similarity=0.068  Sum_probs=165.5

Q ss_pred             hhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCC
Q 015738           46 ERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN  125 (401)
Q Consensus        46 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  125 (401)
                      .+..+.++++.+           .+.++.||||+||..|+.++|++|+++|+....               ....+..|.
T Consensus        76 ~~~~~~~~~l~~-----------~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~---------------~~~~~~~~~  129 (376)
T 2aja_A           76 RNAKQLWSDAHK-----------KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI---------------VKVIQAENY  129 (376)
T ss_dssp             TTCTTHHHHHHH-----------HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS---------------CC--CHHHH
T ss_pred             CCCHHHHHHHHH-----------cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH---------------HHHhccCCC
Confidence            355556666554           344556888888888888888888888772110               012234567


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCcc-
Q 015738          126 TALHEAVSQGNVDVVKILTREDPGYP--YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSH-  202 (401)
Q Consensus       126 t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~-  202 (401)
                      ||||+|+..|+.+++++|+++|++..  ...+.. .||||+|+.                .++.+++++|+++|++++. 
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~----------------~G~~eiv~~Ll~~ga~~~~~  192 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAE----------------NGHLHVLNRLCELAPTEATA  192 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHH----------------TTCHHHHHHHHHSCGGGHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHH----------------CCCHHHHHHHHHcCCccchh
Confidence            78888888888888888888886421  111222 788888887                3478888888888888766 


Q ss_pred             -CCCCCCcHHhHHH-hhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCch
Q 015738          203 -EGPNGKTALHAAA-MRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMT  280 (401)
Q Consensus       203 -~~~~~~t~l~~a~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t  280 (401)
                       .+..|.||||+|+ ..  ++.+++++|+..+..        +.|||++|+..|+.+++++|++.|++.. ..     .+
T Consensus       193 ~~d~~g~TpL~~Aa~~~--G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~~ga~~~-~~-----~~  256 (376)
T 2aja_A          193 MIQAENYYAFRWAAVGR--GHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIARHVNRLK-EM-----HD  256 (376)
T ss_dssp             HHHHHHHHHHHHHHSTT--CCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHHHHHHHH-HH-----HT
T ss_pred             ccCCCCCCHHHHHHHHC--CCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHhcCcccc-cc-----cH
Confidence             6677788888888 77  778888888774421        6788888888888888888888776552 11     13


Q ss_pred             HHHHHHhcCCHHH------------HHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCC-----ccccccc
Q 015738          281 ALHLAAGKGDART------------VERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP-----LARSLID  343 (401)
Q Consensus       281 ~L~~a~~~~~~~~------------~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-----~~~~~~~  343 (401)
                      +++.|+..|+.++            ++.|+.++.                   .+..+.+++|++...     ..|+++ 
T Consensus       257 ~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~-  316 (376)
T 2aja_A          257 AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIP-  316 (376)
T ss_dssp             TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSST-
T ss_pred             HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCC-
Confidence            5556666665442            233333321                   112445566665211     123333 


Q ss_pred             cCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeee
Q 015738          344 EGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       344 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  391 (401)
                         ..+.||||+|+..|+.+++++|+..    ..+++..|+|++++|.
T Consensus       317 ---n~~~~~L~~A~~~g~~e~v~lLl~~----~~v~~~~~~~~~~~~~  357 (376)
T 2aja_A          317 ---GDANELLRLALRLGNQGACALLLSI----PSVLALTKANNYYINE  357 (376)
T ss_dssp             ---TCCCHHHHHHHHHTCTTHHHHHTTS----HHHHHSCC--------
T ss_pred             ---CCccHHHHHHHHcCcHHHHHHHHcC----hHHHHHHHHhcccccc
Confidence               3566899999999999999999854    3778889999998883

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=218.66  Aligned_cols=181  Identities=22%  Similarity=0.232  Sum_probs=162.5

Q ss_pred             CHHHHHHHHhcCCC--CccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHH-----HcCCHHH
Q 015738          186 SFDMVLALLENSTS--VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAA-----YYGNYRT  258 (401)
Q Consensus       186 ~~~~~~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~-----~~~~~~~  258 (401)
                      ..+.++.++..+.+  ++..|..|.||||+|+..  ++.+.++.|+..+..+++..+..|.||||+|+     ..++.++
T Consensus        88 ~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~  165 (276)
T 4hbd_A           88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH--ANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIET  165 (276)
T ss_dssp             HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC--CCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHH
Confidence            77888888887766  788999999999999998  89999999999988678999999999999999     6688999


Q ss_pred             HHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCcc
Q 015738          259 VNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLA  338 (401)
Q Consensus       259 ~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  338 (401)
                      +++|++.|... ...+ ..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++.   .
T Consensus       166 v~~Ll~~g~~~-~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~---~  239 (276)
T 4hbd_A          166 VLQLFRLGNIN-AKAS-QAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAV---P  239 (276)
T ss_dssp             HHHHHHHSCTT-CCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTS---T
T ss_pred             HHHHHHcCCCc-cccC-CCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhc---C
Confidence            99999999665 3333 3789999999999999999999999988 788999999999999999999999999983   5


Q ss_pred             ccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCC
Q 015738          339 RSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQA  374 (401)
Q Consensus       339 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  374 (401)
                      |++++.+|..|.||||+|+..|+.+++++|+++.+.
T Consensus       240 gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          240 SCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             CCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            899999999999999999999999999999988654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=217.71  Aligned_cols=199  Identities=23%  Similarity=0.232  Sum_probs=137.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP  151 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  151 (401)
                      .+.+++|.|+..|+.+.++.+++.+.+.                .++..|..|.||||+|+..|+.+++++|++.|+...
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~----------------~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~  138 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDY----------------VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV  138 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHH----------------HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhh----------------cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC
Confidence            3456777777777777777777766542                145667777777777777777777777777777445


Q ss_pred             CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHh
Q 015738          152 YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEK  231 (401)
Q Consensus       152 ~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~  231 (401)
                      ...+..|.||+++|+....           ...+..++++.|++.|.+++..+..|.||||+|+..  ++.+.++.|+..
T Consensus       139 ~~~~~~g~tpL~~a~~~~~-----------~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~  205 (276)
T 4hbd_A          139 DKQNRAGYSPIMLTALATL-----------KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH--GRVDVVKALLAC  205 (276)
T ss_dssp             TCCCTTSCCHHHHGGGCCC-----------CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT--TCHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHh-----------hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHhC
Confidence            5667777777777774211           112366777777777777777777777777777777  667777777766


Q ss_pred             hcccccccccCCCcHHHHHHHcCCHHHHHHHHh-cCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCC
Q 015738          232 KKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE-TDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNP  302 (401)
Q Consensus       232 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  302 (401)
                      +. +++..|..|.||||+|+..|+.+++++|++ .|+++ +..+. .|.||||+|+..|+.+++++|+++..
T Consensus       206 ga-d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          206 EA-DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDR-DGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             TC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCC-CCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            44 366777777777777777777788887777 66665 33333 67778888887788888877777653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.7e-29  Score=200.26  Aligned_cols=162  Identities=19%  Similarity=0.131  Sum_probs=148.4

Q ss_pred             CccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCc
Q 015738          200 VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKM  279 (401)
Q Consensus       200 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~  279 (401)
                      ++..+..|.||||+|+..  ++.+.+++|++.+. +++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.
T Consensus        28 ~n~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~  102 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACML--GMENAIDKLVENFD-KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDF-SGK  102 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHH--TCGGGHHHHHHHHC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TSC
T ss_pred             HhCcCCCCCCHHHHHHHc--CCHHHHHHHHHhcc-ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCC
Confidence            466788999999999999  89999999998765 47888899999999999999999999999999887 33443 789


Q ss_pred             hHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHh
Q 015738          280 TALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAV  359 (401)
Q Consensus       280 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~  359 (401)
                      ||||.|+..++.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|++    .|++++.+|..|.||||+|+..
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLE----LGADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHh
Confidence            999999999999999999999988 68899999999999999999999999999    7999999999999999999999


Q ss_pred             CChhHHHHHHhh
Q 015738          360 RPKEFHDVMNRS  371 (401)
Q Consensus       360 ~~~~~~~~Ll~~  371 (401)
                      ++.+++++|++.
T Consensus       178 ~~~~~v~~Ll~~  189 (192)
T 2rfm_A          178 GRQEVIKIFTEV  189 (192)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CcHHHHHHHHhc
Confidence            999999999976

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=3.3e-33  Score=241.62  Aligned_cols=281  Identities=14%  Similarity=0.087  Sum_probs=190.4

Q ss_pred             hhhhhhh-cCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCCh---hhhcccCCCCcHHHH
Q 015738            4 NFFKAAS-AGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA---LLLQVNAKGDTPLHL   79 (401)
Q Consensus         4 ~l~~A~~-~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~g~t~L~~   79 (401)
                      .++.|.. .++.+.++++++.|.+       +.||||+|  +..|+.+++++|++    .+.   .....+..|.||||+
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~A--a~~G~~e~v~~Ll~----~ga~~~~~~~~~~~~~tpL~~  134 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVA--AITGCSSALDTLCL----LLTSDEIVKVIQAENYQAFRL  134 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHH--HHHCCHHHHHHHTT----C--CCSSCC--CHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHH--HHcCCHHHHHHHHH----cCCcHHHHHHhccCCCCHHHH
Confidence            4556655 5788888888877653       56999999  99999999999988    444   112345567899999


Q ss_pred             HHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCC
Q 015738           80 AAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPY-SANNYG  158 (401)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~~  158 (401)
                      ||..|+.++|++|+++|++...             ..++..+   .||||+|+..|+.+++++|+++|++... ..+..|
T Consensus       135 Aa~~G~~eiv~~Ll~~gad~~~-------------~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g  198 (376)
T 2aja_A          135 AAENGHLHVLNRLCELAPTEIM-------------AMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN  198 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHH-------------HHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCccc-------------cccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCC
Confidence            9999999999999999974200             0022222   8999999999999999999999987432 266779


Q ss_pred             CCHHHHHH-hcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccccc
Q 015738          159 KTPLYMAA-EYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIK  237 (401)
Q Consensus       159 ~t~l~~a~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~  237 (401)
                      .||||+|+ .                .++.+++++|++.|++       +.||+++|+..  ++.+.+++|++.+.. ++
T Consensus       199 ~TpL~~Aa~~----------------~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~--g~~evv~lL~~~ga~-~~  252 (376)
T 2aja_A          199 YYAFRWAAVG----------------RGHHNVINFLLDCPVM-------LAYAEIHEFEY--GEKYVNPFIARHVNR-LK  252 (376)
T ss_dssp             HHHHHHHHST----------------TCCHHHHHHHTTSHHH-------HHHHHHCTTTT--TTTTHHHHHHHHHHH-HH
T ss_pred             CCHHHHHHHH----------------CCCHHHHHHHHhCCCc-------cchHHHHHHHC--CCHHHHHHHHhcCcc-cc
Confidence            99999999 8                4489999999997753       89999999998  888888888877654 44


Q ss_pred             ccccCCCcHHHHHHHcCCHHHH------------HHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCC-
Q 015738          238 ETDQYGWTPIHYAAYYGNYRTV------------NLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKC-  304 (401)
Q Consensus       238 ~~~~~~~t~L~~a~~~~~~~~~------------~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~-  304 (401)
                      ..+    ++++.|+..|+.+++            +.|+..+                    ..+..+.+++|++.+... 
T Consensus       253 ~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~--------------------~~~~~~~~~~Ll~~~~vk~  308 (376)
T 2aja_A          253 EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN--------------------DEVLLDDIRFLLSIPGIKA  308 (376)
T ss_dssp             HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC--------------------CGGGHHHHHHHHTSTTTGG
T ss_pred             ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc--------------------hhhHHHHHHHHHhChhhhh
Confidence            333    367778888876643            3344332                    112355667776543210 


Q ss_pred             ---ccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          305 ---YELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNR  370 (401)
Q Consensus       305 ---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  370 (401)
                         .......+.||||+|+..|+.+++++|++    .+   ..++..|+|++.+|...|..++.+.-+.
T Consensus       309 l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~----~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          309 LAPTATIPGDANELLRLALRLGNQGACALLLS----IP---SVLALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             GSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT----SH---HHHHSCC---------------------
T ss_pred             hhccCCCCCCccHHHHHHHHcCcHHHHHHHHc----Ch---HHHHHHHHhccccccccccccHHHHHHH
Confidence               01123457789999999999999999998    43   5678899999999999999998875543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.7e-31  Score=203.96  Aligned_cols=158  Identities=19%  Similarity=0.172  Sum_probs=145.5

Q ss_pred             CchhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHH
Q 015738            1 MDLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA   80 (401)
Q Consensus         1 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A   80 (401)
                      .+++|+.|+..|+.+++++|++.|++....+..|.||||+|  +. |+.+++++|++    .|.+++.++..|.||||+|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLL----RGANPDLKDRTGFAVIHDA   77 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence            36899999999999999999999888888888899999999  88 99999999999    7899999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 015738           81 AKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKT  160 (401)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t  160 (401)
                      +..|+.+++++|+++|+++                  +..+..|.||||+|+..|+.+++++|++++++.....+..|.|
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADV------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  139 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             HHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence            9999999999999999884                  6778899999999999999999999999999876788999999


Q ss_pred             HHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC
Q 015738          161 PLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS  199 (401)
Q Consensus       161 ~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~  199 (401)
                      |+++|+.                .++.+++++|+++|++
T Consensus       140 ~l~~A~~----------------~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          140 ACDLARL----------------YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHH----------------TTCHHHHHHHHHTC--
T ss_pred             HHHHHHH----------------cCCHHHHHHHHHhCCC
Confidence            9999998                3489999999999975

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.4e-29  Score=200.76  Aligned_cols=164  Identities=24%  Similarity=0.249  Sum_probs=134.0

Q ss_pred             hhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHH
Q 015738           65 LLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILT  144 (401)
Q Consensus        65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  144 (401)
                      .++.+|..|.||||+||..|+.+++++|+++|+++                  +..+..|.||||+|+..|+.+++++|+
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll   88 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------------------EDKDIEGSTALIWAVKNNRLGIAEKLL   88 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------------------ccccccCccHHHHHHHcCCHHHHHHHH
Confidence            35678899999999999999999999999998874                  566778999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccch
Q 015738          145 REDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTA  224 (401)
Q Consensus       145 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  224 (401)
                      ++|+++ ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.
T Consensus        89 ~~g~~~-~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~  149 (192)
T 2rfm_A           89 SKGSNV-NTKDFSGKTPLMWSII----------------FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY--GRSEI  149 (192)
T ss_dssp             HHTCCT-TCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH--TCHHH
T ss_pred             HCCCCC-CCCCCCCCcHHHHHHH----------------cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence            998884 4678889999999998                3388899999999998888888888888888777  66777


Q ss_pred             HHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcC
Q 015738          225 LPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETD  266 (401)
Q Consensus       225 ~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  266 (401)
                      ++.|++.+ .+++..+..|.|||++|+..|+.+++++|++.+
T Consensus       150 v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          150 VKKLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            77777664 336667777777777777777777777777654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=2.2e-29  Score=197.15  Aligned_cols=169  Identities=20%  Similarity=0.305  Sum_probs=153.4

Q ss_pred             CCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHH
Q 015738          205 PNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHL  284 (401)
Q Consensus       205 ~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~  284 (401)
                      +.+.++|+.|+..  ++.+.++.++...+..++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+
T Consensus         3 ~~~~~~l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~   78 (179)
T 3f6q_A            3 PEFMDDIFTQCRE--GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNR-GDDTPLHL   78 (179)
T ss_dssp             ----CCHHHHHHH--TCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHH
T ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC-CCCCHHHH
Confidence            4578999999999  99999999999988889999999999999999999999999999999887 33443 78999999


Q ss_pred             HHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhH
Q 015738          285 AAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEF  364 (401)
Q Consensus       285 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  364 (401)
                      |+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|++    .|++++.+|..|.|||++|+..++.++
T Consensus        79 A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpl~~A~~~~~~~~  153 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVA----NGALVSICNKYGEMPVDKAKAPLRELL  153 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSSBCCTTSCCGGGGSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCcchhccCCCCcHHHHHHHHHHHH
Confidence            9999999999999999988 68899999999999999999999999999    899999999999999999999999999


Q ss_pred             HHHHHhhcCCChhhhhccC
Q 015738          365 HDVMNRSTQANYDAVNKQN  383 (401)
Q Consensus       365 ~~~Ll~~~~~~~~~~~~~g  383 (401)
                      +++|++. |++++..+..+
T Consensus       154 ~~~L~~~-g~~~~~~~~~~  171 (179)
T 3f6q_A          154 RERAEKM-GQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHT-TCCCSCBCCCC
T ss_pred             HHHHHHh-hcCcccCCccc
Confidence            9999866 99998776655

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.7e-28  Score=189.84  Aligned_cols=159  Identities=23%  Similarity=0.306  Sum_probs=145.3

Q ss_pred             CCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHH
Q 015738          206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLA  285 (401)
Q Consensus       206 ~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a  285 (401)
                      .|.||||.|+..  ++.+.++++++.+. .++..+..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||.|
T Consensus         2 ~~~t~L~~A~~~--g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A   76 (167)
T 3v31_A            2 ANSLSVHQLAAQ--GEMLYLATRIEQEN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLG-KGRESALSLA   76 (167)
T ss_dssp             TTCCCHHHHHHT--TCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHH
T ss_pred             CCcchHHHHHHC--CCHHHHHHHHHcCC-CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcC-CCCCcHHHHH
Confidence            478999999999  99999999998864 48889999999999999999999999999999887 3333 3788999999


Q ss_pred             HhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHH
Q 015738          286 AGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFH  365 (401)
Q Consensus       286 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  365 (401)
                      +..++.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|++    .|++++.+|..|.||||+|+..|+.+++
T Consensus        77 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A           77 CSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLE----SGADPTIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             HHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            999999999999999988 68899999999999999999999999999    8999999999999999999999999999


Q ss_pred             HHHHhhcCCC
Q 015738          366 DVMNRSTQAN  375 (401)
Q Consensus       366 ~~Ll~~~~~~  375 (401)
                      ++|++. +++
T Consensus       152 ~~L~~~-~~~  160 (167)
T 3v31_A          152 QVIESH-LLK  160 (167)
T ss_dssp             HHHHHH-HHH
T ss_pred             HHHHHH-HHH
Confidence            999976 443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=5.2e-29  Score=191.84  Aligned_cols=158  Identities=22%  Similarity=0.209  Sum_probs=105.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP  151 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  151 (401)
                      ...||||.|+..|+.+++++|+++|+++                  +..+..|.||||+|+. |+.+++++|+++|+++ 
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-   63 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV------------------NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-   63 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT------------------TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc------------------cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-
Confidence            3457777777777777777777776653                  4556677777777777 7777777777777663 


Q ss_pred             CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHh
Q 015738          152 YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEK  231 (401)
Q Consensus       152 ~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~  231 (401)
                      ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.++.|++.
T Consensus        64 ~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~  125 (162)
T 1ihb_A           64 DLKDRTGFAVIHDAAR----------------AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE--GHLRVVEFLVKH  125 (162)
T ss_dssp             TCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHH----------------cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHc
Confidence            3566677777777776                2267777777777777776666666666666665  556666666666


Q ss_pred             hcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCc
Q 015738          232 KKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQ  267 (401)
Q Consensus       232 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~  267 (401)
                      +...++..+..|.||||+|+..|+.+++++|+++|+
T Consensus       126 g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            555455556666666666666666666666666654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=9.6e-29  Score=191.28  Aligned_cols=159  Identities=20%  Similarity=0.184  Sum_probs=85.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP  151 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  151 (401)
                      .|.||||.|+..|+.+++++|++.|++                  ++..+..|.||||+|+..|+.+++++|+++|+++ 
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-   62 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV------------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-   62 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC------------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-
Confidence            345555555555555555555555544                  2344445555555555555555555555555442 


Q ss_pred             CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHh
Q 015738          152 YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEK  231 (401)
Q Consensus       152 ~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~  231 (401)
                      ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.++.|++.
T Consensus        63 ~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~  124 (167)
T 3v31_A           63 QLLGKGRESALSLACS----------------KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG--NHVKCVKMLLES  124 (167)
T ss_dssp             TCCCTTCCCHHHHHHH----------------HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHT
T ss_pred             CCcCCCCCcHHHHHHH----------------cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc--CCHHHHHHHHHc
Confidence            2344555555555555                1245555555555555555555555555555555  555555555543


Q ss_pred             hcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcc
Q 015738          232 KKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQS  268 (401)
Q Consensus       232 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  268 (401)
                      +. +++..+..|.|||++|+..|+.+++++|++++..
T Consensus       125 g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          125 GA-DPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             TC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            32 2455555566666666666666666666655433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.8e-28  Score=188.10  Aligned_cols=158  Identities=25%  Similarity=0.366  Sum_probs=141.1

Q ss_pred             CCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHH
Q 015738          204 GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH  283 (401)
Q Consensus       204 ~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~  283 (401)
                      ...+.++++.|+..  ++.+.+++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++. +..+. .|.||||
T Consensus        11 ~~~~~~~l~~A~~~--g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~   85 (169)
T 2y1l_E           11 GSDLGKKLLEAARA--GRDDEVRILMANGA-DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDH-AGMTPLR   85 (169)
T ss_dssp             --CHHHHHHHHHHH--TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHH
T ss_pred             CCcccchHHHHHHc--CCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCCHHH
Confidence            44577899999999  89999999998754 47888899999999999999999999999999886 33333 7899999


Q ss_pred             HHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChh
Q 015738          284 LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKE  363 (401)
Q Consensus       284 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  363 (401)
                      .|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|++    .|++++.+|..|.||||+|+..++.+
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~  160 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLK----NGADVNAQDKFGKTAFDISIDNGNED  160 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            99999999999999999988 68899999999999999999999999999    79999999999999999999999999


Q ss_pred             HHHHHHhh
Q 015738          364 FHDVMNRS  371 (401)
Q Consensus       364 ~~~~Ll~~  371 (401)
                      ++++|++.
T Consensus       161 ~~~~L~~~  168 (169)
T 2y1l_E          161 LAEILQKL  168 (169)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHc
Confidence            99999854

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=5.2e-29  Score=192.39  Aligned_cols=154  Identities=21%  Similarity=0.259  Sum_probs=73.9

Q ss_pred             CCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHH
Q 015738          206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLA  285 (401)
Q Consensus       206 ~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a  285 (401)
                      .+.+||+.|+..  ++.+.+++++...+......+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|
T Consensus         7 ~~~~~l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A   82 (165)
T 3twr_A            7 EADRQLLEAAKA--GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK-GGLVPLHNA   82 (165)
T ss_dssp             HHHHHHHHHHHH--TCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHH
T ss_pred             hhhHHHHHHHHh--CCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCC-CCCCHHHHH
Confidence            344455555544  44455555544444444444444445555555555555555555544443 22222 344555555


Q ss_pred             HhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHH
Q 015738          286 AGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFH  365 (401)
Q Consensus       286 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  365 (401)
                      +..++.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|.||||+|.. ++.+++
T Consensus        83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~a~~-~~~~i~  156 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ----HGADPTKKNRDGNTPLDLVKD-GDTDIQ  156 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCTGGGSCT-TCHHHH
T ss_pred             HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCChhHhHhc-CChHHH
Confidence            555555555555554444 34444455555555555555555555554    444455555555555555433 444555


Q ss_pred             HHHH
Q 015738          366 DVMN  369 (401)
Q Consensus       366 ~~Ll  369 (401)
                      ++|+
T Consensus       157 ~~L~  160 (165)
T 3twr_A          157 DLLR  160 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4444

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=7.6e-29  Score=191.47  Aligned_cols=150  Identities=23%  Similarity=0.195  Sum_probs=135.8

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHH
Q 015738          240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYA  319 (401)
Q Consensus       240 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  319 (401)
                      +..+.|||+.|+..|+.++++.|++.+....... ...|.||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHH
Confidence            5567899999999999999999999765442333 34788999999999999999999999988 688999999999999


Q ss_pred             HHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeecccee
Q 015738          320 MVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTE  396 (401)
Q Consensus       320 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  396 (401)
                      +..++.+++++|++    .|++++.+|..|.||||+|+..++.+++++|++. |++++.+|..|.||+++|.++..+
T Consensus        83 ~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~~~~~  154 (165)
T 3twr_A           83 CSYGHYEVAELLVK----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKDGDTD  154 (165)
T ss_dssp             HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCTTCHH
T ss_pred             HHcCcHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhcCChH
Confidence            99999999999999    8999999999999999999999999999999976 999999999999999999876543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=5.3e-28  Score=187.29  Aligned_cols=160  Identities=25%  Similarity=0.331  Sum_probs=117.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 015738           69 VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDP  148 (401)
Q Consensus        69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  148 (401)
                      ....+.++|+.||..|+.++|++|+++|+++                  +..+..|.||||+|+..|+.+++++|+++|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   71 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADV------------------NAEDASGWTPLHLAAFNGHLEIVEVLLKNGA   71 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3456678899999999999999999888773                  5667788899999999999999999988887


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHH
Q 015738          149 GYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKL  228 (401)
Q Consensus       149 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  228 (401)
                      ++ ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.+++|
T Consensus        72 ~~-~~~~~~g~t~L~~A~~----------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~L  132 (169)
T 2y1l_E           72 DV-NAVDHAGMTPLRLAAL----------------FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF--GHLEIVEVL  132 (169)
T ss_dssp             CT-TCCCTTSCCHHHHHHH----------------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHH
T ss_pred             CC-CccCCCCCCHHHHHHH----------------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHH
Confidence            74 3667788888888887                3378888888888888777777777777777666  566666666


Q ss_pred             HHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcC
Q 015738          229 LEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETD  266 (401)
Q Consensus       229 l~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  266 (401)
                      ++.+.. ++..+..|.|||++|+..|+.+++++|++.|
T Consensus       133 l~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          133 LKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            655433 5556666666666666666666666666543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=3.9e-28  Score=185.66  Aligned_cols=154  Identities=21%  Similarity=0.281  Sum_probs=141.1

Q ss_pred             CCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHH
Q 015738          207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAA  286 (401)
Q Consensus       207 ~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~  286 (401)
                      +.+||+.|+..  ++.+.++++++..+..++..+..|.||||+ +..|+.+++++|++.|+++ +..+. .|.||||.|+
T Consensus         2 ~~~~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~   76 (156)
T 1bd8_A            2 AGDRLSGAAAR--GDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDT-SGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHH--TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHH
T ss_pred             cchHHHHHHHh--CCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHH
Confidence            56899999999  999999999999655788899999999999 9999999999999999887 44443 7899999999


Q ss_pred             hcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHH
Q 015738          287 GKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHD  366 (401)
Q Consensus       287 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  366 (401)
                      ..|+.+++++|++.|.+ ++.+|..|+||||+|+..++.+++++|++    . ++++.+|..|.||||+|+..|+.++++
T Consensus        77 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~-~~~~~~~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA----E-SDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT----T-SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             HcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHh----c-cCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            99999999999999987 68899999999999999999999999999    5 889999999999999999999999999


Q ss_pred             HHHhh
Q 015738          367 VMNRS  371 (401)
Q Consensus       367 ~Ll~~  371 (401)
                      +|+++
T Consensus       151 ~Ll~~  155 (156)
T 1bd8_A          151 ILQGH  155 (156)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            99864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.2e-32  Score=221.95  Aligned_cols=198  Identities=17%  Similarity=0.024  Sum_probs=126.0

Q ss_pred             hhhhhHHHHHHH---HhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHH
Q 015738           18 KDMERDVIERLL---TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE   94 (401)
Q Consensus        18 ~~ll~~~~~~~~---~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   94 (401)
                      +.|++++.++..   .+..|.|+||+|  +..|+.+++++|++    .|.+++..|..|.||||+||..|+.++|++|++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDA--ALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHH--HHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             eehhccCCCCccccccccchhHHHHHH--HHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            455555554332   223355667777  77777777777776    466777777777777777777777777777777


Q ss_pred             hhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH--HhcCCch
Q 015738           95 RAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMA--AEYENRS  172 (401)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a--~~~~~~~  172 (401)
                      +|+++                  +..|..|.||||+|+..|+.+++++|+++|+++....+..|.|||++|  +.     
T Consensus        76 ~ga~~------------------n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~-----  132 (229)
T 2vge_A           76 AGANV------------------NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR-----  132 (229)
T ss_dssp             TTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTS-----
T ss_pred             CCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHh-----
Confidence            77763                  456667777777777777777777777777775544446777777777  44     


Q ss_pred             hHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccc--ccccccCCCcHHHHH
Q 015738          173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL--IKETDQYGWTPIHYA  250 (401)
Q Consensus       173 ~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~--~~~~~~~~~t~L~~a  250 (401)
                                 .++.+++++|++.|++++..+..+.++++.++..  .   ..+.++.. +..  ++..|..|.||||+|
T Consensus       133 -----------~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~--~---~~~~ll~~-ga~~~~~~~d~~G~TpL~~A  195 (229)
T 2vge_A          133 -----------EGYADCATYLADVEQSMGLMNSGAVYALWDYSAE--F---GDELSFRE-GESVTVLRRDGPEETDWWWA  195 (229)
T ss_dssp             -----------TTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCS--S---TTBCCBCT-TCEEEEEESSCTTCSSEEEE
T ss_pred             -----------cChHHHHHHHHHcCCCcccccCCchHHHHHHhhc--c---ccccCccc-cccccccccCCCcccHHHHH
Confidence                       3467777777777777777777777777654332  1   11222222 222  455566667777777


Q ss_pred             HHcCCHHHHHH
Q 015738          251 AYYGNYRTVNL  261 (401)
Q Consensus       251 ~~~~~~~~~~~  261 (401)
                      +..|+.++|+.
T Consensus       196 ~~~g~~~~v~~  206 (229)
T 2vge_A          196 ALHGQEGYVPR  206 (229)
T ss_dssp             EETTEEEEEEG
T ss_pred             HHcCCcceeeh
Confidence            77666666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.6e-30  Score=207.42  Aligned_cols=193  Identities=15%  Similarity=0.079  Sum_probs=157.2

Q ss_pred             HHHHHhcCCCCccC---CCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcC
Q 015738          190 VLALLENSTSVSHE---GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETD  266 (401)
Q Consensus       190 ~~~Ll~~~~~~~~~---~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  266 (401)
                      ++.|++.|++++..   +..+.||||+|+..  ++.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|++.|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~--g~~~~v~~Ll~~g~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALT--GELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHH--TCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHc--CCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            45688888887654   44566789999999  99999999998755 58889999999999999999999999999999


Q ss_pred             ccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccC-CCCCcHHHHH--HHhCChhHHHHHHhcCCccccccc
Q 015738          267 QSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVD-NRGCNFLHYA--MVSFHVGQLRNLLENNPLARSLID  343 (401)
Q Consensus       267 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~  343 (401)
                      +++ +..+. .|.||||+|+..|+.+++++|++.|++ ++.++ ..|+||||+|  +..++.+++++|++    .|++++
T Consensus        78 a~~-n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~----~ga~~~  150 (229)
T 2vge_A           78 ANV-NSPDS-HGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLAD----VEQSMG  150 (229)
T ss_dssp             CCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH----HHHHTT
T ss_pred             CCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHH----cCCCcc
Confidence            887 44444 799999999999999999999999998 46665 7999999999  99999999999999    899999


Q ss_pred             cCCCCCCcHHHHHHHhCChhHHHHHHhhcCCC--hhhhhccCcceeeee-ecccee
Q 015738          344 EGDAEGNTPLHVLAAVRPKEFHDVMNRSTQAN--YDAVNKQNVSVRHVF-NYGYTE  396 (401)
Q Consensus       344 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~a-~~~~~~  396 (401)
                      .+|..|.||++.++..+..   ++|++. |++  ++.+|..|.|||++| ..|+.+
T Consensus       151 ~~~~~~~~~l~~~~~~~~~---~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~~  202 (229)
T 2vge_A          151 LMNSGAVYALWDYSAEFGD---ELSFRE-GESVTVLRRDGPEETDWWWAALHGQEG  202 (229)
T ss_dssp             TSGGGEEEESSCBCCSSTT---BCCBCT-TCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred             cccCCchHHHHHHhhcccc---ccCccc-cccccccccCCCcccHHHHHHHcCCcc
Confidence            9999999999976555443   455544 888  778899999999999 444444

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=9e-28  Score=186.77  Aligned_cols=169  Identities=18%  Similarity=0.088  Sum_probs=147.1

Q ss_pred             CCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCC-CccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccc
Q 015738          158 GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTS-VSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLI  236 (401)
Q Consensus       158 ~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~  236 (401)
                      +.+||+.|+.                .++.++++.|++.+.+ ++..+..|.||||+|+..  ++.+.+++|++.+. ++
T Consensus         2 ~~~~L~~A~~----------------~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~-~~   62 (172)
T 3v30_A            2 DSLSIHQLAA----------------QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF--GEIETVRFLLEWGA-DP   62 (172)
T ss_dssp             --CCHHHHHH----------------TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT--TCHHHHHHHHHHTC-CT
T ss_pred             chhhHHHHHH----------------cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCC-Cc
Confidence            4689999998                4499999999999987 788899999999999999  88999999998764 47


Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHH
Q 015738          237 KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFL  316 (401)
Q Consensus       237 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  316 (401)
                      +..+..|.||||+|+..|+.+++++|++.|++. +..+. .|.||||+|+..++.+++++|++.|++ ++.+|..|.|||
T Consensus        63 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l  139 (172)
T 3v30_A           63 HILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDW-NGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPM  139 (172)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHH
Confidence            888999999999999999999999999999887 44443 789999999999999999999999988 688999999999


Q ss_pred             HHHHHhCChhHHHHHHhcCCccccccccCCCCCCcH
Q 015738          317 HYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTP  352 (401)
Q Consensus       317 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~  352 (401)
                      |+|+..++.+++++|++    .++++..++..|.||
T Consensus       140 ~~A~~~~~~~~~~~L~~----~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          140 DLAVALGYRKVQQVIEN----HILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHTCHHHHHHHHH----HHHHHSCC-------
T ss_pred             HHHHHhCcHHHHHHHHH----HHHHHhcccCCCCCC
Confidence            99999999999999999    899999999999887

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=7.9e-28  Score=183.12  Aligned_cols=150  Identities=23%  Similarity=0.307  Sum_probs=103.8

Q ss_pred             CcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHh
Q 015738          208 KTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAG  287 (401)
Q Consensus       208 ~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~  287 (401)
                      .++|+.|+..  ++.+.++++++.+.. ++ .+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||.|+.
T Consensus         3 ~~~L~~A~~~--g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~   76 (153)
T 1awc_B            3 GKKLLEAARA--GQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTK-VDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHH--TCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHH
T ss_pred             cHHHHHHHHc--CCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHH
Confidence            4677777776  667777777766543 22 4566777777777777777777777776665 22222 56677777777


Q ss_pred             cCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHH
Q 015738          288 KGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDV  367 (401)
Q Consensus       288 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  367 (401)
                      .|+.+++++|++++.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|.||||+|+..|+.+++++
T Consensus        77 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           77 EGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK----YGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            7777777777777666 56677777777777777777777777777    667777777777777777777777777765


Q ss_pred             H
Q 015738          368 M  368 (401)
Q Consensus       368 L  368 (401)
                      |
T Consensus       152 L  152 (153)
T 1awc_B          152 L  152 (153)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.6e-28  Score=201.34  Aligned_cols=183  Identities=12%  Similarity=0.093  Sum_probs=131.8

Q ss_pred             CCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHH
Q 015738          205 PNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHL  284 (401)
Q Consensus       205 ~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~  284 (401)
                      ..|.||||.|+..  +..+.+..++..+.. ++. +..+.||||.|+..|+.+++++|++.|+++ +..+. .|.||||+
T Consensus         3 ~~g~t~L~~a~~~--~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~   76 (239)
T 1ycs_B            3 ITGQVSLPPGKRT--NLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPND-EGITALHN   76 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT-TSCCHHHH
T ss_pred             ccccccCchhhhh--hhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHH
Confidence            4689999999998  888999999987655 443 367899999999999999999999999876 44444 79999999


Q ss_pred             HHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCC-cHHHHH--HHhCC
Q 015738          285 AAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGN-TPLHVL--AAVRP  361 (401)
Q Consensus       285 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A--~~~~~  361 (401)
                      |+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|++    .|++++.++..|. ||||+|  +..|+
T Consensus        77 A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~~~t~l~~a~~~~~g~  151 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVE----SGAAVFAMTYSDMQTAADKCEEMEEGY  151 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCSSSCCCHHHHCCSSSTTC
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcceecCCCCcchHHHHHHhhhcc
Confidence            9999999999999999988 78899999999999999999999999999    8999999998877 999999  78899


Q ss_pred             hhHHHHHHhhcCCChhhh---------hccCcceeeeeeccceeEEe
Q 015738          362 KEFHDVMNRSTQANYDAV---------NKQNVSVRHVFNYGYTELKV  399 (401)
Q Consensus       362 ~~~~~~Ll~~~~~~~~~~---------~~~g~t~l~~a~~~~~~~~~  399 (401)
                      .+++++|+.. |++++..         +..|.+|.+++.+....+.+
T Consensus       152 ~~~~~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~v  197 (239)
T 1ycs_B          152 TQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTI  197 (239)
T ss_dssp             CCHHHHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEE
T ss_pred             HHHHHHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCCEEEE
Confidence            9999999976 9988877         45577888887554444443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=4.2e-28  Score=184.62  Aligned_cols=140  Identities=19%  Similarity=0.123  Sum_probs=131.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhC
Q 015738          244 WTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSF  323 (401)
Q Consensus       244 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  323 (401)
                      .+||+.|+..|+.+++++|++.|++..   ....|.||||.|+..|+.+++++|++.+.+ ++.++..|+||||+|+..+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            579999999999999999999998763   344789999999999999999999999988 6889999999999999999


Q ss_pred             ChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          324 HVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       324 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      +.+++++|++    .|++++.+|..|.||||+|+..++.+++++|++. |++++.+|..|.||+++|..
T Consensus        79 ~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~  142 (153)
T 1awc_B           79 HANIVEVLLK----HGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISID  142 (153)
T ss_dssp             CHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHH
Confidence            9999999999    8999999999999999999999999999999977 99999999999999999943

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.2e-27  Score=187.23  Aligned_cols=145  Identities=21%  Similarity=0.204  Sum_probs=131.3

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHH
Q 015738          241 QYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAM  320 (401)
Q Consensus       241 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~  320 (401)
                      ..+.++|+.|+..|+.+++++|++.+....+..+. .|.||||.|+..|+.+++++|++.+.+ ++.++..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            34778999999999999999999986654344444 899999999999999999999999988 6889999999999999


Q ss_pred             HhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          321 VSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       321 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      ..++.+++++|++    .|++++.+|..|.||||+|+..++.+++++|++. |++++.+|..|.||+++|..
T Consensus        81 ~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~  147 (179)
T 3f6q_A           81 SHGHRDIVQKLLQ----YKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKA  147 (179)
T ss_dssp             HTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCH
T ss_pred             HcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHH
Confidence            9999999999999    8999999999999999999999999999999976 99999999999999999954

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=8.8e-28  Score=183.35  Aligned_cols=145  Identities=17%  Similarity=0.143  Sum_probs=115.5

Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCc-H
Q 015738          237 KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCN-F  315 (401)
Q Consensus       237 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t-~  315 (401)
                      ...+..+.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+ .|+.+++++|++.+.+ ++.++..|+| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNS-YGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence            445677999999999999999999999999887 44444 8999999985 8999999999999987 7889999999 9


Q ss_pred             HHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          316 LHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       316 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      ||+|+..++.+++++|++    .|++++.+|..|.||||+|+..++.+++++|++. |++++.+|..|.||.+-+
T Consensus        82 L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHR----AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHH----HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C-----------------
T ss_pred             HHHHHHCCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccC
Confidence            999999999999999999    8999999999999999999999999999999966 999999999999998754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=5.6e-27  Score=179.21  Aligned_cols=153  Identities=22%  Similarity=0.259  Sum_probs=116.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhh-hhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 015738           73 GDTPLHLAAKFGHFEIVRVLIERAK-LAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP  151 (401)
Q Consensus        73 g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  151 (401)
                      +.||||.||..|+.+++++|++... +                  ++..+..|.||||+ +..|+.+++++|+++|+++ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~------------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-   61 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH------------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASP-   61 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC------------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC------------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-
Confidence            4578888888888888888888721 2                  35667778888888 7888888888888888774 


Q ss_pred             CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHh
Q 015738          152 YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEK  231 (401)
Q Consensus       152 ~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~  231 (401)
                      ...+..|.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++.+.+++|+..
T Consensus        62 ~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~  123 (156)
T 1bd8_A           62 NVQDTSGTSPVHDAAR----------------TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE--GHTAVVSFLAAE  123 (156)
T ss_dssp             TCCCTTSCCHHHHHHH----------------TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH--TCHHHHHHHHTT
T ss_pred             CCcCCCCCCHHHHHHH----------------cCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh--ChHHHHHHHHhc
Confidence            4667778888888887                3378888888888888888777777777777777  677777777766


Q ss_pred             hcccccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q 015738          232 KKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET  265 (401)
Q Consensus       232 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  265 (401)
                        .+++..+..|.|||++|+..|+.+++++|+++
T Consensus       124 --~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          124 --SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             --SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             --cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence              44666777777777777777777777777753

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=5.6e-29  Score=204.06  Aligned_cols=176  Identities=16%  Similarity=0.040  Sum_probs=123.6

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA   81 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~   81 (401)
                      .||||.|++.|+.+.++.|+++|.+...+.. |.||||+|  +..|+.+++++|++    .+++++..|..|.||||+||
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~-~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDS--SLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             --------------------------------CHHHHHHH--HHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHH
T ss_pred             cccCchhhhhhhHHHHHHHhccCCCcccCch-hhHHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHH
Confidence            4899999999999999999999998877654 99999999  99999999999988    78899999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CC
Q 015738           82 KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYG-KT  160 (401)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~t  160 (401)
                      ..|+.++|++|+++|++                  ++..|..|.||||+|+..|+.+++++|+++|+++. ..+..+ .|
T Consensus        79 ~~g~~~~v~~Ll~~ga~------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t  139 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN------------------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQT  139 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCC
T ss_pred             HcCCHHHHHHHHHcCCC------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcc
Confidence            99999999999999998                  46778899999999999999999999999999966 455445 49


Q ss_pred             HHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccC---------CCCCCcHHhHHHhh
Q 015738          161 PLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHE---------GPNGKTALHAAAMR  217 (401)
Q Consensus       161 ~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~---------~~~~~t~l~~a~~~  217 (401)
                      |+++|..              ...++.+++++|++.|++++..         +..+.++.+++...
T Consensus       140 ~l~~a~~--------------~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~  191 (239)
T 1ycs_B          140 AADKCEE--------------MEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKE  191 (239)
T ss_dssp             HHHHCCS--------------SSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCS
T ss_pred             hHHHHHH--------------hhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccC
Confidence            9999943              2245889999999999888765         33455555555443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=4.9e-27  Score=174.74  Aligned_cols=133  Identities=18%  Similarity=0.135  Sum_probs=122.2

Q ss_pred             ccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCC-C
Q 015738          234 NLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNR-G  312 (401)
Q Consensus       234 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-g  312 (401)
                      ..++..+..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|+. ++.+++++|++++.+ ++.+|.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALN-RFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcC-CCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCC
Confidence            456778899999999999999999999999999887 3344 378999999999 999999999999988 6889999 9


Q ss_pred             CcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCC
Q 015738          313 CNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQAN  375 (401)
Q Consensus       313 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  375 (401)
                      +||||+|+..++.+++++|++    .|++++.+|..|.||||+|+..++.+++++|++. |+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHR----AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHH----TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            999999999999999999999    8999999999999999999999999999999976 775

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=8.7e-25  Score=160.64  Aligned_cols=126  Identities=32%  Similarity=0.417  Sum_probs=116.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHH
Q 015738          242 YGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMV  321 (401)
Q Consensus       242 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  321 (401)
                      +|.||||+|+..|+.+++++|++.+.+.. ..+ ..|.||||.|+..++.+++++|++.+.+ ++.++..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKD-KNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcC-CCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHH
Confidence            48899999999999999999999988763 333 3789999999999999999999999988 68899999999999999


Q ss_pred             hCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCC
Q 015738          322 SFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQAN  375 (401)
Q Consensus       322 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  375 (401)
                      .++.+++++|++    .|++++.+|..|.||||+|+..++.+++++|++. |+|
T Consensus        78 ~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY  126 (126)
T ss_dssp             TTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred             cChHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence            999999999999    8999999999999999999999999999999976 875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=2.8e-27  Score=184.83  Aligned_cols=159  Identities=13%  Similarity=0.091  Sum_probs=135.6

Q ss_pred             hhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhh----chHHHHHHHHhhCChhhhcccCCCCcHHH
Q 015738            3 LNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSEREN----VSTKFVEEILEKCPALLLQVNAKGDTPLH   78 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~g~t~L~   78 (401)
                      ++|+.|++.|+.+.++.+++.+++. ..+..|+||||+|  +..++.    +++++|++    .|++++.+|..|+||||
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDV--LRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFF   80 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHH--HHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHH
Confidence            6799999999999999999987643 3335699999999  888754    58999988    89999999999999999


Q ss_pred             HHHHcCC------HHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCC-hHHHHHHHcC-----CHHHHHHHHh-
Q 015738           79 LAAKFGH------FEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKN-TALHEAVSQG-----NVDVVKILTR-  145 (401)
Q Consensus        79 ~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-  145 (401)
                      +|+..|+      .+++++|+++|++                  ++.+|..|. ||||+|+..+     +.+++++|++ 
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gad------------------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~  142 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGAD------------------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ  142 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCC------------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCC------------------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence            9999987      5789999999999                  467888999 9999999954     4579999999 


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccC
Q 015738          146 EDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHE  203 (401)
Q Consensus       146 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~  203 (401)
                      +|+++ ...|..|.|||++|+.                .+..+++++|.+...+.+.+
T Consensus       143 ~gad~-~~~d~~G~TpL~~A~~----------------~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          143 SGLQL-LIKDKWGLTALEFVKR----------------CQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             TTCCT-TCCCTTSCCHHHHHHT----------------TTCHHHHHHHHHHHHHHTCC
T ss_pred             cCCCC-cccCCCCCCHHHHHHH----------------cCCHHHHHHHHHHHHHHhcc
Confidence            88884 5889999999999998                33788888888766555443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=4.9e-26  Score=177.77  Aligned_cols=162  Identities=12%  Similarity=0.060  Sum_probs=121.5

Q ss_pred             CCcHHhHHHhhcccccchHHHHHHhhcccccccc-cCCCcHHHHHHHcCCH----HHHHHHHhcCccccccccCCCCchH
Q 015738          207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD-QYGWTPIHYAAYYGNY----RTVNLLLETDQSASNIADKDRKMTA  281 (401)
Q Consensus       207 ~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~g~t~  281 (401)
                      +.++++.|+..  ++.+.+..++....   +..+ ..|.||||+|+..++.    +++++|++.|+++ +..+. .|+||
T Consensus         6 ~~~~l~~Aa~~--g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~-~g~Tp   78 (186)
T 3t8k_A            6 EYRTVSAAAML--GTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTK-EGTTL   78 (186)
T ss_dssp             HCSSHHHHHHH--SCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCT-TCCCT
T ss_pred             cccHHHHHHHc--CCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCC-CCCcH
Confidence            45778888887  77777777776542   3333 6688888888888864    4888888888887 44443 78888


Q ss_pred             HHHHHhcCC------HHHHHHhhhcCCCCccccCCCCC-cHHHHHHHhC-----ChhHHHHHHhcCCccccccccCCCCC
Q 015738          282 LHLAAGKGD------ARTVERIISGNPKCYELVDNRGC-NFLHYAMVSF-----HVGQLRNLLENNPLARSLIDEGDAEG  349 (401)
Q Consensus       282 L~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~Ll~~~~~~~~~~~~~~~~g  349 (401)
                      ||+|+..++      .+++++|+++|++ ++.+|..|+ ||||+|+..+     ..+++++|++.   .|++++.+|..|
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~---~gad~~~~d~~G  154 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ---SGLQLLIKDKWG  154 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS---TTCCTTCCCTTS
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh---cCCCCcccCCCC
Confidence            888888776      5778888888887 688888888 8888888843     34577888762   478888888888


Q ss_pred             CcHHHHHHHhCChhHHHHHHhhcCCChhhhh
Q 015738          350 NTPLHVLAAVRPKEFHDVMNRSTQANYDAVN  380 (401)
Q Consensus       350 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  380 (401)
                      +||||+|++.++.+++++|+.. ..+.+.++
T Consensus       155 ~TpL~~A~~~~~~~~v~~L~~~-~~~~~~~~  184 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALKMMEDY-IKKYNLKE  184 (186)
T ss_dssp             CCHHHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence            8888888888888888877744 44444443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=8.6e-26  Score=177.13  Aligned_cols=179  Identities=21%  Similarity=0.173  Sum_probs=142.2

Q ss_pred             hhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHc
Q 015738            4 NFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF   83 (401)
Q Consensus         4 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~   83 (401)
                      ..+.|++.|..+.+++|++.+.        |.++....  ...                  .....+..|.||||+||..
T Consensus         3 ~~~~aa~~~~~~~~~~li~~~~--------~~~~~~~~--~~~------------------~~~~~~~~g~t~L~~A~~~   54 (183)
T 3deo_A            3 NKIIGSRTAGEGAMEYLIEWKD--------GHSPSWVP--SSY------------------IAADVVSEYETPWWTAARK   54 (183)
T ss_dssp             EEEEEEEEETTTEEEEEEEETT--------CCCCEEEE--GGG------------------SCHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHhcCCchhHHHHHHhC--------CCCccccc--hhc------------------ccccCCCCCCCHHHHHHHc
Confidence            3456777777777777776422        45554444  221                  1122345778999999999


Q ss_pred             CCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 015738           84 GHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLY  163 (401)
Q Consensus        84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  163 (401)
                      |+.+++++|++ |++                  ++..|..|.||||+|+..|+.+++++|+++|+++....+..|.||||
T Consensus        55 g~~~~v~~Ll~-~~~------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           55 ADEQALSQLLE-DRD------------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH  115 (183)
T ss_dssp             TCHHHHHHHTT-TSC------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHH
T ss_pred             CCHHHHHHHHh-cCC------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence            99999999999 776                  46778899999999999999999999999999866444488999999


Q ss_pred             HHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCC
Q 015738          164 MAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYG  243 (401)
Q Consensus       164 ~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  243 (401)
                      +|+.                .++.+++++|+++|++++..+..|.||||+|+..  ++.                  ..+
T Consensus       116 ~A~~----------------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~--~~~------------------~~~  159 (183)
T 3deo_A          116 MAAG----------------YVRPEVVEALVELGADIEVEDERGLTALELAREI--LKT------------------TPK  159 (183)
T ss_dssp             HHHH----------------TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH--HHT------------------CCC
T ss_pred             HHHh----------------cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh--ccC------------------ccc
Confidence            9998                3489999999999999999999999999999875  211                  346


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc
Q 015738          244 WTPIHYAAYYGNYRTVNLLLET  265 (401)
Q Consensus       244 ~t~L~~a~~~~~~~~~~~Ll~~  265 (401)
                      .+||++|+..|..+++++|.++
T Consensus       160 ~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          160 GNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHcCHHHHHHHHHHh
Confidence            7899999999999999998764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=7.7e-25  Score=162.85  Aligned_cols=125  Identities=21%  Similarity=0.246  Sum_probs=114.7

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHH
Q 015738          240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYA  319 (401)
Q Consensus       240 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  319 (401)
                      ...+.||||+|+..|+.+++++|++.|++. +..+. .|.||||.|+..++.+++++|++.+.+ ++.+|..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDE-YGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHH
Confidence            445789999999999999999999999887 33443 789999999999999999999999888 688999999999999


Q ss_pred             HHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          320 MVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       320 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      +..++.+++++|++    .|++++.+|..|.||||+|+..++.+++++|++.
T Consensus        88 ~~~~~~~~v~~Ll~----~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           88 AFIGHLEIAEVLLK----HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHH----cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999    8999999999999999999999999999999864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=4.9e-25  Score=163.92  Aligned_cols=132  Identities=17%  Similarity=0.160  Sum_probs=99.5

Q ss_pred             ChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHH
Q 015738           63 PALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKI  142 (401)
Q Consensus        63 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  142 (401)
                      +.+++..+..|.||||+|+..|+.+++++|+++|+++                  +..+..|.||||+|+. ++.+++++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~-~~~~~v~~   62 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP------------------NALNRFGRRPIQVMMM-GSAQVAEL   62 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTCCTTTTTSTT-SCHHHHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc------------------CCcCCCCCCHHHHHHc-CCHHHHHH
Confidence            4567778888888888888888888888888888763                  5667778888888888 88888888


Q ss_pred             HHhcCCCCCCCCCCC-CCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccc
Q 015738          143 LTREDPGYPYSANNY-GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAV  221 (401)
Q Consensus       143 Ll~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  221 (401)
                      |+++++++. ..+.. |.||||+|+.                .++.+++++|++.|++++..+..|.||||+|+..  ++
T Consensus        63 Ll~~g~~~~-~~~~~~g~t~L~~A~~----------------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~--~~  123 (136)
T 1d9s_A           63 LLLHGAEPN-CADPATLTRPVHDAAR----------------EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ--GH  123 (136)
T ss_dssp             HHHHTCCSS-CCBTTTTBCHHHHHHH----------------HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH--TC
T ss_pred             HHHCCCCCC-CcCCCCCCCHHHHHHH----------------cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CC
Confidence            888887743 56666 7888888887                2377888888888887777766666666666666  55


Q ss_pred             cchHHHHHHhh
Q 015738          222 DTALPKLLEKK  232 (401)
Q Consensus       222 ~~~~~~ll~~~  232 (401)
                      .++++.|++.+
T Consensus       124 ~~~~~~Ll~~G  134 (136)
T 1d9s_A          124 RDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC
Confidence            66666665543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=4.8e-26  Score=169.37  Aligned_cols=122  Identities=25%  Similarity=0.284  Sum_probs=112.8

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA   81 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~   81 (401)
                      .|+||.||..|+.+++++|++.|.+....+..|.||||+|  +..|+.+++++|++    .+++++..|..|.||||+|+
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA--TAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHH
Confidence            4799999999999999999999988877888899999999  99999999999998    68999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcC
Q 015738           82 KFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRED  147 (401)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  147 (401)
                      ..|+.+++++|+++|+++                  +..|..|.||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADV------------------NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCC------------------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999884                  567889999999999999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=4e-25  Score=181.44  Aligned_cols=171  Identities=22%  Similarity=0.153  Sum_probs=142.0

Q ss_pred             CCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhh
Q 015738           34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF  113 (401)
Q Consensus        34 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  113 (401)
                      +.+++..+  +..|+.+.+..+..    .+.+   .+..|.||||+||..|+.++|++|++ |++               
T Consensus        15 ~~~~~l~~--~~~g~~~~~~~~~~----~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------------   69 (244)
T 3ui2_A           15 GAMEYLIE--WKDGHSPSWVPSSY----IAAD---VVSEYETPWWTAARKADEQALSQLLE-DRD---------------   69 (244)
T ss_dssp             TEEEEEEE--ESSCCCCEEEEGGG----SCHH---HHHHHHHHHHHHHTTTCHHHHHHTTT-TCC---------------
T ss_pred             CccHHHHH--HHcCCCcccccccc----cccc---cccCCCCHHHHHHHcCCHHHHHHHHc-CCC---------------
Confidence            56777777  77777777655433    3333   34578999999999999999999999 776               


Q ss_pred             HHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHH
Q 015738          114 RQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLAL  193 (401)
Q Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~L  193 (401)
                         ++..|..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+.                .++.+++++|
T Consensus        70 ---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~----------------~g~~~~v~~L  130 (244)
T 3ui2_A           70 ---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG----------------YVRPEVVEAL  130 (244)
T ss_dssp             ---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH----------------TTCHHHHHHH
T ss_pred             ---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH----------------cCCHHHHHHH
Confidence               467788999999999999999999999999999765545889999999998                3489999999


Q ss_pred             HhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcc
Q 015738          194 LENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQS  268 (401)
Q Consensus       194 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  268 (401)
                      +++|++++..+..|.||||+|+..  ..                  ...+.|||++|+..|+.+++++|++.+.+
T Consensus       131 l~~ga~~~~~d~~g~t~l~~A~~~--~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          131 VELGADIEVEDERGLTALELAREI--LK------------------TTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHH--HT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHCCCCCCCCCCCCCcHHHHHHHH--Hh------------------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            999999999999999999999864  11                  24578999999999999999999986443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.2e-24  Score=165.83  Aligned_cols=146  Identities=22%  Similarity=0.165  Sum_probs=113.3

Q ss_pred             ccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCch
Q 015738          201 SHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMT  280 (401)
Q Consensus       201 ~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t  280 (401)
                      ...+..+.||||+|+..  ++.+.+++|++.+ .+++..+..|.||||+|+ .|+.+++++|++.|+++ +..+. .|.|
T Consensus         6 ~~~~~~~~t~L~~A~~~--g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~-~g~t   79 (156)
T 1bi7_B            6 GSSMEPSADWLATAAAR--GRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADP-ATLT   79 (156)
T ss_dssp             ----CCSTTHHHHHHHH--TCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCT-TTCC
T ss_pred             cCCCccchHHHHHHHHc--CCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCC-CCCc
Confidence            34566799999999999  9999999999875 458889999999999985 89999999999999887 44444 7888


Q ss_pred             -HHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHH
Q 015738          281 -ALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLA  357 (401)
Q Consensus       281 -~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~  357 (401)
                       |||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++    .|++++.++..|.||.+-+.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA----AAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS----CC------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH----cCCCCCccCcCcCcccccCC
Confidence             99999999999999999999988 68899999999999999999999999999    89999999999999987543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.4e-24  Score=156.82  Aligned_cols=126  Identities=31%  Similarity=0.453  Sum_probs=109.8

Q ss_pred             cCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchh
Q 015738           33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEP  112 (401)
Q Consensus        33 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (401)
                      +|.||||+|  +..|+.+++++|++    .+.+++..+..|.||||+|+..|+.+++++|+++|+++             
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------------   61 (126)
T 1n0r_A            1 NGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-------------   61 (126)
T ss_dssp             CCCCHHHHH--HHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------------
T ss_pred             CCccHHHHH--HHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-------------
Confidence            388999999  99999999999988    57888888999999999999999999999999998874             


Q ss_pred             hHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHH
Q 015738          113 FRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA  192 (401)
Q Consensus       113 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~  192 (401)
                           +..+..|.||||+|+..++.+++++|+++|+++ ...+..|.||+++|+.                .++.+++++
T Consensus        62 -----~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~----------------~~~~~~~~~  119 (126)
T 1n0r_A           62 -----NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR----------------NGHLEVVKL  119 (126)
T ss_dssp             -----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH----------------TTCHHHHHH
T ss_pred             -----cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH----------------cCcHHHHHH
Confidence                 566778999999999999999999999998884 4678889999999998                338899999


Q ss_pred             HHhcCCC
Q 015738          193 LLENSTS  199 (401)
Q Consensus       193 Ll~~~~~  199 (401)
                      |+++|++
T Consensus       120 Ll~~Gad  126 (126)
T 1n0r_A          120 LLEAGAY  126 (126)
T ss_dssp             HHHHTCC
T ss_pred             HHHcCCC
Confidence            9998875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=1.6e-24  Score=161.53  Aligned_cols=125  Identities=22%  Similarity=0.226  Sum_probs=82.9

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHH
Q 015738          238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLH  317 (401)
Q Consensus       238 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  317 (401)
                      .++..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+..++.+++++|++.+.+ ++.+|..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDH-AGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHH
Confidence            34566777777777777777777777766655 22332 566777777777777777777776665 4666666777777


Q ss_pred             HHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHH
Q 015738          318 YAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMN  369 (401)
Q Consensus       318 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  369 (401)
                      +|+..++.+++++|++    .|++++.+|..|.||||+|+..+..+++++|.
T Consensus        82 ~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLS----YGASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            7777777777777776    56667777777777777776666666655444

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=5.8e-24  Score=158.43  Aligned_cols=112  Identities=24%  Similarity=0.275  Sum_probs=106.2

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHH
Q 015738          275 KDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLH  354 (401)
Q Consensus       275 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~  354 (401)
                      ...|.||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|.||||
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ----HKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCGGGCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCcccCcCCCCCCHHH
Confidence            34899999999999999999999999987 68899999999999999999999999999    89999999999999999


Q ss_pred             HHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          355 VLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       355 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      +|+..++.+++++|++. |++++.+|..|.||+++|..
T Consensus        82 ~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             HHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCC
T ss_pred             HHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhh
Confidence            99999999999999966 99999999999999999953

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=7e-24  Score=154.72  Aligned_cols=108  Identities=17%  Similarity=0.081  Sum_probs=78.8

Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      .|.||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|.||||+|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHH
Confidence            456777777777777777777777665 56677777777777777777777777777    6677777777777777777


Q ss_pred             HHhCChhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          357 AAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       357 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      +..++.+++++|++. |++++.+|..|.||+++|
T Consensus        81 ~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHC
T ss_pred             HHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHh
Confidence            777777777777755 777777777777777777

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=2.6e-23  Score=175.46  Aligned_cols=138  Identities=21%  Similarity=0.194  Sum_probs=120.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCccccccc----cCCCCchHHHHHHhc---CCHHHHHHhhhcCCCCccccCCCCCcH
Q 015738          243 GWTPIHYAAYYGNYRTVNLLLETDQSASNIA----DKDRKMTALHLAAGK---GDARTVERIISGNPKCYELVDNRGCNF  315 (401)
Q Consensus       243 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~----~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~  315 (401)
                      ..++|+.|+..|+.+.++.|++.|+++....    ....|.||||+|+..   ++.+++++|++.|++ ++.+|..|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence            4467999999999999999999998874320    234899999999987   899999999999988 78899999999


Q ss_pred             HHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          316 LHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       316 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      ||+|+..|+.+++++|++    .|++++.+|..|.||||+|+..++.+++++|+.. |++      .|.||||+|..
T Consensus       230 Lh~A~~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g~tpLh~A~~  295 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLK----GRALVGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TFAFPLHVDYS  295 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHH----TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TTSSCCC----
T ss_pred             HHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CCCChhHHHHh
Confidence            999999999999999999    8999999999999999999999999999999966 654      68999999943

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=5.9e-24  Score=172.36  Aligned_cols=139  Identities=21%  Similarity=0.134  Sum_probs=112.7

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhc-CCCCccccCCCCCcHH
Q 015738          238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISG-NPKCYELVDNRGCNFL  316 (401)
Q Consensus       238 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l  316 (401)
                      ..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|+..|+.+++++|++. +.+ ++.+|..|+|||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL  144 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDK-AGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTAL  144 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHH
Confidence            34667899999999999999999999999887 44444 799999999999999999999999 555 789999999999


Q ss_pred             HHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCc
Q 015738          317 HYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNV  384 (401)
Q Consensus       317 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  384 (401)
                      |+|+..|+.+++++|++    .|++++.+|..|.||||+|+..+..++++.|+.. |++.+.+|..|.
T Consensus       145 ~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~~  207 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLA----KGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHHHTCHHHHHHHHH----HTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             HHHHHcCCHHHHHHHHH----cCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhhh
Confidence            99999999999999999    8999999999999999999999999999999866 998888877653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=3.5e-24  Score=175.84  Aligned_cols=166  Identities=17%  Similarity=0.131  Sum_probs=141.2

Q ss_pred             hhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHH
Q 015738            3 LNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK   82 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~   82 (401)
                      ++++.++..|+.+.++.+...+.+.   +..|.||||+|  +..|+.+++++|++     +.+++..|..|.||||+||.
T Consensus        17 ~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           17 MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAG   86 (244)
T ss_dssp             EEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHH--HTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHH
T ss_pred             cHHHHHHHcCCCccccccccccccc---ccCCCCHHHHH--HHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHH
Confidence            3566778888888888777655433   23489999999  99999999999977     67899999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhcc-CCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 015738           83 FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVN-NEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTP  161 (401)
Q Consensus        83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  161 (401)
                      .|+.++|++|+++|+++                  +..+ ..|.||||+|+..|+.+++++|+++|+++ ...+..|.||
T Consensus        87 ~g~~~~v~~Ll~~ga~~------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~  147 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGADL------------------DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTA  147 (244)
T ss_dssp             HTCHHHHHHHHHTTCCT------------------TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCH
T ss_pred             CCCHHHHHHHHHcCCCC------------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcH
Confidence            99999999999999985                  4555 67999999999999999999999999985 4789999999


Q ss_pred             HHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhh
Q 015738          162 LYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK  232 (401)
Q Consensus       162 l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~  232 (401)
                      ||+|+...                                 ....+.+||++|+..  ++.+.++.|+...
T Consensus       148 l~~A~~~~---------------------------------~~~~~~~~l~~a~~~--g~~~iv~~L~~~~  183 (244)
T 3ui2_A          148 LELAREIL---------------------------------KTTPKGNPMQFGRRI--GLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHH---------------------------------TTCCCSSHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHH---------------------------------hccCCCCHHHHHHHc--ChHHHHHHHHHhc
Confidence            99999621                                 113579999999998  8888888888764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.7e-23  Score=152.69  Aligned_cols=114  Identities=17%  Similarity=0.113  Sum_probs=101.8

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHH
Q 015738          240 DQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYA  319 (401)
Q Consensus       240 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  319 (401)
                      +..+.||||+|+..|+.+++++|++.+.++ +..+. .|.||||+|+..++.+++++|++.+.+ ++.+|..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE-GGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCT-TSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHH
Confidence            456889999999999999999999999876 33443 799999999999999999999999988 788999999999999


Q ss_pred             HHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhC
Q 015738          320 MVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVR  360 (401)
Q Consensus       320 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~  360 (401)
                      +..++.+++++|++    .|++++.+|..|.||||+|...+
T Consensus        81 ~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           81 VYEGHVSCVKLLLS----KGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHhCCHH
Confidence            99999999999999    89999999999999999994433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=2.5e-22  Score=167.49  Aligned_cols=134  Identities=16%  Similarity=0.244  Sum_probs=119.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCcccccc----ccCCCCchHHHHHHhc---CCHHHHHHhhhcCCCCccccCCCCCcH
Q 015738          243 GWTPIHYAAYYGNYRTVNLLLETDQSASNI----ADKDRKMTALHLAAGK---GDARTVERIISGNPKCYELVDNRGCNF  315 (401)
Q Consensus       243 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~----~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~  315 (401)
                      ..++|+.|+..|+.+.++.+++.|.+....    .....|.||||+|+..   ++.+++++|+++|++ ++.+|..|+||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCH
Confidence            457899999999999999999999886322    1234799999999999   899999999999988 78899999999


Q ss_pred             HHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCcceeeee
Q 015738          316 LHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       316 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  390 (401)
                      ||+|+..|+.+++++|++    .|++++.+|..|.||||+|+..|+.+++++|++. |+        +.+++|.+
T Consensus       209 Lh~A~~~g~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga--------~~~~~~~~  270 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLR----GKASIEIANESGETPLDIAKRLKHEHCEELLTQA-LS--------GRFNSHVH  270 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HT--------TCCCSSCC
T ss_pred             HHHHHHcCCHHHHHHHHH----cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CC--------CCCCccee
Confidence            999999999999999999    8999999999999999999999999999999976 65        35666665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=2.8e-22  Score=157.03  Aligned_cols=138  Identities=26%  Similarity=0.334  Sum_probs=107.3

Q ss_pred             CCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHH
Q 015738          206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLA  285 (401)
Q Consensus       206 ~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a  285 (401)
                      .|.||||+|+..  ++.+.++.++.  +.+++..+..|.||||+|+..|+.+++++|++.|+++ +..+...|.||||+|
T Consensus        43 ~g~t~L~~A~~~--g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           43 EYETPWWTAARK--ADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred             CCCCHHHHHHHc--CCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            577888888887  77888888887  4557778888888888888888888888888888776 334434788888888


Q ss_pred             HhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHH
Q 015738          286 AGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFH  365 (401)
Q Consensus       286 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  365 (401)
                      +..|+.+++++|+++|++ ++.+|..|+||||+|++.++.                     ..+.+||++|+..|..+++
T Consensus       118 ~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~---------------------~~~~~~l~~a~~~~~~~i~  175 (183)
T 3deo_A          118 AGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT---------------------TPKGNPMQFGRRIGLEKVI  175 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT---------------------CCCCSHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC---------------------cccccHHHHHHHcCHHHHH
Confidence            888888888888888877 677888888888888763321                     3567888888888888888


Q ss_pred             HHHHh
Q 015738          366 DVMNR  370 (401)
Q Consensus       366 ~~Ll~  370 (401)
                      ++|.+
T Consensus       176 ~~L~~  180 (183)
T 3deo_A          176 NVLEG  180 (183)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            88764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.9e-23  Score=169.37  Aligned_cols=138  Identities=20%  Similarity=0.158  Sum_probs=111.9

Q ss_pred             HHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHh-hhhhccCCCCC
Q 015738           28 LLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIER-AKLAQRGDEEP  106 (401)
Q Consensus        28 ~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~  106 (401)
                      ...+..|.||||+|  +..|+.+++++|++    .+.+++..|..|.||||+||..|+.++|++|+++ |++        
T Consensus        67 ~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~--------  132 (222)
T 3ehr_A           67 AEQAESIDNPLHEA--AKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE--------  132 (222)
T ss_dssp             HHHEEEESCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC--------
T ss_pred             cccccccccccccc--cccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC--------
Confidence            34566799999999  99999999999998    7899999999999999999999999999999998 877        


Q ss_pred             CCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCC
Q 015738          107 ESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSAS  186 (401)
Q Consensus       107 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~  186 (401)
                                ++..|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||+++|+.                .+.
T Consensus       133 ----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~----------------~~~  185 (222)
T 3ehr_A          133 ----------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATN----------------AAC  185 (222)
T ss_dssp             ----------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCS----------------HHH
T ss_pred             ----------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcc----------------hhH
Confidence                      4677889999999999999999999999999985 4788999999999998                338


Q ss_pred             HHHHHHHHhcCCCCccCCCC
Q 015738          187 FDMVLALLENSTSVSHEGPN  206 (401)
Q Consensus       187 ~~~~~~Ll~~~~~~~~~~~~  206 (401)
                      .++++.+++.++.....+..
T Consensus       186 ~~~l~~l~~~~~~~~~~~~~  205 (222)
T 3ehr_A          186 ASLLKKKQGTDAVRTLSNAE  205 (222)
T ss_dssp             HHHHC---------------
T ss_pred             HHHHHHHhccchhhhccchh
Confidence            88999999988877665443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=8.2e-22  Score=169.77  Aligned_cols=146  Identities=15%  Similarity=0.137  Sum_probs=116.3

Q ss_pred             ccCCCcHHHHHHHc-CCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHH
Q 015738          240 DQYGWTPIHYAAYY-GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHY  318 (401)
Q Consensus       240 ~~~~~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  318 (401)
                      ...+.|+||.|+.. ++.+++++|++.|++++.......|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~  274 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHH  274 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            33456899999999 99999999999999985443335899999999999999999999999988 78999999999999


Q ss_pred             HHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh--cCCChhhhhccCcceeeee
Q 015738          319 AMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS--TQANYDAVNKQNVSVRHVF  390 (401)
Q Consensus       319 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~l~~a  390 (401)
                      |+..++.+++++|++    .|++++.+|..|.||||+|+..++.+++++|+..  .+++....+..+.|+++++
T Consensus       275 A~~~g~~~~v~~LL~----~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          275 ATILGHTGLACLFLK----RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred             HHHcCcHHHHHHHHH----CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence            999999999999999    8999999999999999999999999999999865  2345556778899999888

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.1e-21  Score=135.21  Aligned_cols=93  Identities=29%  Similarity=0.356  Sum_probs=83.6

Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      .|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|.||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHH
Confidence            377999999999999999999999887 68899999999999999999999999999    8899999999999999999


Q ss_pred             HHhCChhHHHHHHhhcCCC
Q 015738          357 AAVRPKEFHDVMNRSTQAN  375 (401)
Q Consensus       357 ~~~~~~~~~~~Ll~~~~~~  375 (401)
                      +..++.+++++|++. |++
T Consensus        76 ~~~~~~~~~~~Ll~~-ga~   93 (93)
T 1n0q_A           76 ARNGHLEVVKLLLEA-GAY   93 (93)
T ss_dssp             HHTTCHHHHHHHHHT-TCC
T ss_pred             HHcCCHHHHHHHHHc-CCC
Confidence            999999999999866 764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=5.3e-21  Score=161.32  Aligned_cols=141  Identities=16%  Similarity=0.099  Sum_probs=117.4

Q ss_pred             CCCcHHhHHHhhcccccchHHHHHHhhcccccc------cccCCCcHHHHHHHc---CCHHHHHHHHhcCccccccccCC
Q 015738          206 NGKTALHAAAMRSFAVDTALPKLLEKKKNLIKE------TDQYGWTPIHYAAYY---GNYRTVNLLLETDQSASNIADKD  276 (401)
Q Consensus       206 ~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~------~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~  276 (401)
                      ...++|+.|+..  ++.+.+..++..+.. ++.      .+..|.||||+|+..   ++.+++++|++.|+++ +..+ .
T Consensus       150 ~~~~~L~~A~~~--g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d-~  224 (301)
T 2b0o_E          150 PEPQRLWTAICN--RDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKA-A  224 (301)
T ss_dssp             -CHHHHHHHHHT--TCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCC-T
T ss_pred             chHHHHhhhhhc--cCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCC-C
Confidence            345789999998  889999999876654 555      588899999999997   8999999999999987 4444 4


Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++    .|++      .|.||||+|
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~----~ga~------~g~tpLh~A  293 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ----AQAG------TFAFPLHVD  293 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHH----HHHH------TTSSCCC--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH----hcCC------CCCChhHHH
Confidence            899999999999999999999999988 78999999999999999999999999999    6765      589999999


Q ss_pred             HHhCCh
Q 015738          357 AAVRPK  362 (401)
Q Consensus       357 ~~~~~~  362 (401)
                      +..|+.
T Consensus       294 ~~~g~~  299 (301)
T 2b0o_E          294 YSWVIS  299 (301)
T ss_dssp             ------
T ss_pred             HhcCCc
Confidence            998863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=9.4e-22  Score=141.55  Aligned_cols=106  Identities=23%  Similarity=0.271  Sum_probs=95.8

Q ss_pred             CCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHH
Q 015738          276 DRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV  355 (401)
Q Consensus       276 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  355 (401)
                      ..|.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|++    .|++++.+|..|.||||+
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLA----KGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTT----TTCCTTCCCTTCCCTTHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCCHHHH
Confidence            4788999999999999999999999887 68889999999999999999999999999    789999999999999999


Q ss_pred             HHHhCChhHHHHHHhhcCCChhhhhccCccee
Q 015738          356 LAAVRPKEFHDVMNRSTQANYDAVNKQNVSVR  387 (401)
Q Consensus       356 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  387 (401)
                      |+..++.+++++|++. |++++.++..|.+|-
T Consensus        82 A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAK-GADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTT-SSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHc-CCCCCcCCccccccc
Confidence            9999999999999966 999999999999884

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=5.6e-22  Score=136.65  Aligned_cols=93  Identities=31%  Similarity=0.430  Sum_probs=85.7

Q ss_pred             cCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchh
Q 015738           33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEP  112 (401)
Q Consensus        33 ~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (401)
                      +|+||||+|  +..|+.+++++|++    .|.+++.+|..|.||||+|+..|+.+++++|+++|+++             
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------   61 (93)
T 1n0q_A            1 NGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-------------   61 (93)
T ss_dssp             --CCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------
T ss_pred             CCCcHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------
Confidence            389999999  99999999999998    79999999999999999999999999999999999984             


Q ss_pred             hHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 015738          113 FRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPG  149 (401)
Q Consensus       113 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  149 (401)
                           +.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        62 -----~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           62 -----NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             -----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -----CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                 67788999999999999999999999998863

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=1.3e-22  Score=174.75  Aligned_cols=141  Identities=18%  Similarity=0.187  Sum_probs=103.4

Q ss_pred             hhhhhhhhc-CCCCchhhhhhHHHHHHHHh--hcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHH
Q 015738            3 LNFFKAASA-GNSEPFKDMERDVIERLLTA--KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHL   79 (401)
Q Consensus         3 ~~l~~A~~~-g~~~~~~~ll~~~~~~~~~~--~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~   79 (401)
                      ++||.|+.. |+++++++|++.|++.+..+  ..|.||||+|  +..|+.+++++|++    .|++++..|..|.||||+
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~A--a~~g~~~iv~~LL~----~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQA--TAANSLLACEFLLQ----NGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHH
Confidence            588888888 88899998888887776665  6688899998  88888888888888    688888888888999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCC
Q 015738           80 AAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--YSANNY  157 (401)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~~  157 (401)
                      |+..|+.++|++|+++|+++                  +..|..|.||||+|+..++.+++++|+..+....  ...+..
T Consensus       275 A~~~g~~~~v~~LL~~Gad~------------------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~  336 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADL------------------GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG  336 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------
T ss_pred             HHHcCcHHHHHHHHHCcCCC------------------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCC
Confidence            99888999999999888874                  5677888899999998888899888887754321  122334


Q ss_pred             CCCHHHHHHh
Q 015738          158 GKTPLYMAAE  167 (401)
Q Consensus       158 ~~t~l~~a~~  167 (401)
                      +.|++..+..
T Consensus       337 ~~t~l~i~~~  346 (368)
T 3jue_A          337 DETYLDIFRD  346 (368)
T ss_dssp             ----------
T ss_pred             CCCHHHHHHH
Confidence            5566655554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=9.5e-21  Score=157.97  Aligned_cols=189  Identities=15%  Similarity=0.105  Sum_probs=136.8

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcC-C
Q 015738          120 VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENS-T  198 (401)
Q Consensus       120 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~-~  198 (401)
                      .|..+.+.++.+...|+..+.+++...-+.........+.......                    ..-..+++...- .
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~--------------------~fI~aKYl~~~f~~  121 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARK--------------------DYITAKYMERRYAR  121 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHH--------------------HHHHHHHTTCTTSC
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHH--------------------HHHHHHHHHhhccc
Confidence            4667889999999999988888776543321111111111111000                    111111221111 1


Q ss_pred             CCccCCCCCCcHHhHHHhhcccccchHHHHHHhhccc-----ccccccCCCcHHHHHHHc---CCHHHHHHHHhcCcccc
Q 015738          199 SVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL-----IKETDQYGWTPIHYAAYY---GNYRTVNLLLETDQSAS  270 (401)
Q Consensus       199 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~  270 (401)
                      ..........++|+.|+..  ++...+..++..+...     ++..+..|.||||+|+..   |+.+++++|++.|+++ 
T Consensus       122 ~~~~~~~~~l~~l~~a~~~--~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-  198 (278)
T 1dcq_A          122 KKHADTAAKLHSLCEAVKT--RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-  198 (278)
T ss_dssp             CCSSSHHHHHHHHHHHHHT--TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-
T ss_pred             ccccccchhhhhhhhHhhh--cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-
Confidence            1111112234689999988  8888888888876553     334478899999999999   8999999999999987 


Q ss_pred             ccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          271 NIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       271 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  333 (401)
                      +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++
T Consensus       199 n~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          199 DKQTG-KGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            44444 899999999999999999999999988 78999999999999999999999999999

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=2.5e-20  Score=134.09  Aligned_cols=109  Identities=24%  Similarity=0.212  Sum_probs=98.0

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHH
Q 015738          238 ETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLH  317 (401)
Q Consensus       238 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  317 (401)
                      .+|..|.||||+|+..|+.+++++|++.++++ +..+. .|.||||.|+..++.+++++|++.+++ ++.+|..|+||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSK-DGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCS-SSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHH
Confidence            46788999999999999999999999999886 33443 789999999999999999999999988 6889999999999


Q ss_pred             HHHHhCChhHHHHHHhcCCccccccccCCCCCCcHH
Q 015738          318 YAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPL  353 (401)
Q Consensus       318 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L  353 (401)
                      +|+..++.+++++|++    .|+++|.++..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll~----~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDA----KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHT----TSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHH----cCCCCCcCCccccccc
Confidence            9999999999999999    8999999999999884

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=4.4e-18  Score=120.89  Aligned_cols=88  Identities=20%  Similarity=0.252  Sum_probs=78.9

Q ss_pred             CCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHH
Q 015738          276 DRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV  355 (401)
Q Consensus       276 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  355 (401)
                      ..|.||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++    .|++++.+|..|.||||+
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLE----AGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccccCCCcHHHH
Confidence            4788999999999999999999988877 67888999999999999999999999999    788999999999999999


Q ss_pred             HHHhCChhHHHHH
Q 015738          356 LAAVRPKEFHDVM  368 (401)
Q Consensus       356 A~~~~~~~~~~~L  368 (401)
                      |+..++.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999998876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=1.8e-18  Score=122.86  Aligned_cols=90  Identities=26%  Similarity=0.362  Sum_probs=82.8

Q ss_pred             HhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCC
Q 015738           30 TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESG  109 (401)
Q Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  109 (401)
                      .+..|.|+||+|  +..|+.+++++|++    .+++++.+|..|.||||+||..|+.+++++|+++|++.          
T Consensus        20 ~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~----------   83 (110)
T 2zgd_A           20 MGSDLGKKLLEA--ARAGQDDEVRILMA----NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV----------   83 (110)
T ss_dssp             --CCHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred             cCCccchHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------
Confidence            445699999999  99999999999998    68999999999999999999999999999999999884          


Q ss_pred             chhhHHHhHhccCCCChHHHHHHHcCCHHHHHHH
Q 015738          110 VEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKIL  143 (401)
Q Consensus       110 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  143 (401)
                              +..|..|.||||+|+..|+.+++++|
T Consensus        84 --------~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           84 --------XAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             --------TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             --------cccccCCCcHHHHHHHcCCHHHHHHh
Confidence                    67788999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	401
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-25
 Identities = 81/343 (23%), Positives = 129/343 (37%), Gaps = 49/343 (14%)

Query: 75  TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQ 134
           TPLH+A+  GH  IV+ L++R             G  P      + N +  T LH A   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR-------------GASP-----NVSNVKVETPLHMAARA 43

Query: 135 GNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD------ 188
           G+ +V K L +       +     +TPL+ AA     ++M++ LLEN  + +        
Sbjct: 44  GHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAARI-GHTNMVKLLLENNANPNLATTAGHT 101

Query: 189 ------------MVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLI 236
                        VLALLE   S +     G T LH AA         + +LL ++    
Sbjct: 102 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG---KVRVAELLLERDAHP 158

Query: 237 KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVER 296
               + G TP+H A ++ N   V LL    +  S  +      T LH+AA +        
Sbjct: 159 NAAGKNGLTPLHVAVHHNNLDIVKLL--LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 216

Query: 297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL 356
           ++            +G   LH A    H      ++      ++  + G+  G TPLH++
Sbjct: 217 LLQYGGSANA-ESVQGVTPLHLAAQEGHA----EMVALLLSKQANGNLGNKSGLTPLHLV 271

Query: 357 AAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKV 399
           A        DV+        DA  +   +  HV ++      V
Sbjct: 272 AQEGHVPVADVL-IKHGVMVDATTRMGYTPLHVASHYGNIKLV 313

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 4e-25
 Identities = 82/391 (20%), Positives = 141/391 (36%), Gaps = 67/391 (17%)

Query: 8   AASAGNSEPFKDMERDVIERLLTAKAK--------NTILHINIISSERENVSTKFVEEIL 59
           A+  G+          +++ LL   A          T LH+   +   E        + L
Sbjct: 7   ASFMGHLP--------IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA------KYL 52

Query: 60  EKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPE------------ 107
            +  A +        TPLH AA+ GH  +V++L+E                         
Sbjct: 53  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

Query: 108 ---SGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYM 164
                +         +  +  T LH A   G V V ++L   D  +P +A   G TPL++
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHV 171

Query: 165 AAEYENRSDMLRGLLEN------------------RTSASFDMVLALLENSTSVSHEGPN 206
           A  + N  D+++ LL                          ++  +LL+   S + E   
Sbjct: 172 AVHH-NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 230

Query: 207 GKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETD 266
           G T LH AA         +  LL  K+      ++ G TP+H  A  G+    ++L++  
Sbjct: 231 GVTPLHLAAQEGH---AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-- 285

Query: 267 QSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVG 326
                 A      T LH+A+  G+ + V+ ++  +          G + LH A    H  
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 327 QLRNLLENNPLARSLIDEGDAEGNTPLHVLA 357
            +  LL+N     +  +E  ++G TPL +  
Sbjct: 345 IVTLLLKNG----ASPNEVSSDGTTPLAIAK 371

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 2e-17
 Identities = 50/255 (19%), Positives = 89/255 (34%), Gaps = 38/255 (14%)

Query: 57  EILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERA---------------KLAQR 101
           E+L +  A        G TPLH+A    + +IV++L+ R                  A++
Sbjct: 149 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ 208

Query: 102 GDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTP 161
              E    +  +       + +  T LH A  +G+ ++V +            N  G TP
Sbjct: 209 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTP 267

Query: 162 LYMAAEYENRSDMLRGLLEN------------------RTSASFDMVLALLENSTSVSHE 203
           L++    E    +   L+++                      +  +V  LL++   V+ +
Sbjct: 268 LHLV-AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 204 GPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLL 263
              G + LH AA +     T +  LL K      E    G TP+  A   G     ++L 
Sbjct: 327 TKLGYSPLHQAAQQG---HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

Query: 264 ETDQSASNIADKDRK 278
                 S +   D+ 
Sbjct: 384 VVTDETSFVLVSDKH 398

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 7e-16
 Identities = 72/298 (24%), Positives = 114/298 (38%), Gaps = 47/298 (15%)

Query: 61  KCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMV 120
           +  A    +  KG TPLH+AAK+G   +  +L+ER                         
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-------------DAH-----PNAA 161

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
                T LH AV   N+D+VK+L     G P+S    G TPL++A   +N+ ++ R LL+
Sbjct: 162 GKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIA-AKQNQVEVARSLLQ 219

Query: 181 NRT------------------SASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVD 222
                                    +MV  LL    + +    +G T LH  A       
Sbjct: 220 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG---H 276

Query: 223 TALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTAL 282
             +  +L K   ++  T + G+TP+H A++YGN + V  L    Q+  N   K    + L
Sbjct: 277 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL-LQHQADVNAKTKL-GYSPL 334

Query: 283 HLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH---VGQLRNLLENNPL 337
           H AA +G    V  ++         V + G   L  A    +      L+ + +    
Sbjct: 335 HQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF 391

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 5e-11
 Identities = 53/253 (20%), Positives = 92/253 (36%), Gaps = 38/253 (15%)

Query: 8   AASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL 67
           A    N +  K +          A    T LHI    ++ E          L +      
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV------ARSLLQYGGSAN 225

Query: 68  QVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEE---------PESGVEPFRQMIR 118
             + +G TPLHLAA+ GH E+V +L+ +      G++           E  V     +I+
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 119 ------MVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRS 172
                        T LH A   GN+ +VK    +      +    G +PL+ AA+  +  
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQGH-- 342

Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK 232
                          D+V  LL+N  S +    +G T L  A    +   T + K++  +
Sbjct: 343 --------------TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 388

Query: 233 KNLIKETDQYGWT 245
            + +  +D++  +
Sbjct: 389 TSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 279 MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLA 338
           +T LH+A+  G    V+ ++        + + +    LH A  + H    + LL+N    
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNK--- 56

Query: 339 RSLIDEGDAEGNTPLHVLAAVRPKEFHDVM 368
            + ++    +  TPLH  A +       ++
Sbjct: 57  -AKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (219), Expect = 1e-20
 Identities = 40/274 (14%), Positives = 85/274 (31%), Gaps = 32/274 (11%)

Query: 22  RDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK----GDTPL 77
           +++   L    +       +    ++       ++E+ +  P   L +N      G+TPL
Sbjct: 52  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 111

Query: 78  HLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQ--- 134
           H      + E+V+ L++              G           +N   + L +AV     
Sbjct: 112 HWLTSIANLELVKHLVKH-------------GSN-----RLYGDNMGESCLVKAVKSVNN 153

Query: 135 GNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALL 194
            +    + L           ++  +T L+        +         +      M   + 
Sbjct: 154 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA---KYYLDILMGWIVK 210

Query: 195 ENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYG 254
           + +  +       ++  +               L     N++   D  G T ++ AA  G
Sbjct: 211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 270

Query: 255 NYRTVNLLLETDQSAS-NIADKDRKMTALHLAAG 287
           N   V+ LL+    A   IA+K   +  +   AG
Sbjct: 271 NISIVDALLD--YGADPFIANKS-GLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.0 bits (175), Expect = 1e-14
 Identities = 48/312 (15%), Positives = 106/312 (33%), Gaps = 32/312 (10%)

Query: 19  DMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLH 78
           D+  D +   L  K    +    +  +E++     F++ +L      +        +  +
Sbjct: 9   DLTSDFLSSPL--KIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN 66

Query: 79  LAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVD 138
                 + +   V  +   L +  D  P + +         V+   NT LH   S  N++
Sbjct: 67  SEGGSSNQQQQHVSFDSL-LQEVNDAFPNTQLNLNIP----VDEHGNTPLHWLTSIANLE 121

Query: 139 VVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENST 198
           +VK L +         +N G++ L  A +  N  D            +F+ +L  L    
Sbjct: 122 LVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDS----------GTFEALLDYLYPC- 169

Query: 199 SVSHEGPNGKTALHAAAMRS----------FAVDTALPKLLEKKKNLIKETDQYGWTPIH 248
            +  E    +T LH   + S          + +D  +  +++K+   I+       +  +
Sbjct: 170 -LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 228

Query: 249 YAAYYGNYRTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARTVERIISGNPKCYEL 307
                     +  L      A+ +  +D    T L++AA  G+   V+ ++        +
Sbjct: 229 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFI 287

Query: 308 VDNRGCNFLHYA 319
            +  G   + + 
Sbjct: 288 ANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (145), Expect = 6e-11
 Identities = 31/248 (12%), Positives = 71/248 (28%), Gaps = 34/248 (13%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
            +      H +      +V               + +G TPL+      N          
Sbjct: 70  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN---------- 119

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDT-ALPKLLEKKKNLIKET 239
                  ++V  L+++ ++  +    G++ L  A       D+     LL+     +   
Sbjct: 120 ------LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 240 DQYGWTPIHYAAYYGNYRTVNL-----------LLETDQSASNIADKDRKMTALHLAAGK 288
           D    T +H+          +             +   Q+    +  + K +  +   G+
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 289 GDARTVERIISGNPKCYEL--VDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGD 346
                +E +         L   D+ G   L+ A    ++  +  LL+      +     +
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG----ADPFIAN 289

Query: 347 AEGNTPLH 354
             G  P+ 
Sbjct: 290 KSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 6e-09
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 23/241 (9%)

Query: 169 ENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKL 228
           E +  +   L         +M  +L  +S++ + EG +        +  S   +      
Sbjct: 34  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVND-AF 92

Query: 229 LEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGK 288
              + NL    D++G TP+H+     N   V  L++    ++ +   +   + L  A   
Sbjct: 93  PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK--HGSNRLYGDNMGESCLVKAVKS 150

Query: 289 ---GDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP--------- 336
               D+ T E ++     C  L D+     LH+ +++  +       +            
Sbjct: 151 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 210

Query: 337 LARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTE 396
                I  G  E  +  +     R     + ++         +N Q+       + G T 
Sbjct: 211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM-LNAQD-------SNGDTC 262

Query: 397 L 397
           L
Sbjct: 263 L 263

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 3e-19
 Identities = 57/289 (19%), Positives = 92/289 (31%), Gaps = 44/289 (15%)

Query: 35  NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
           N +L   +     +N     V+++LE    +  Q    G TPLH A +    +IV +L+ 
Sbjct: 6   NHLLIKAV-----QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 95  RAKL---------------AQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDV 139
                              A  G  +           +   +    TA  EA   G V  
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 140 VKILTREDPGY---------PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMV 190
           +K L +                     G T L  AAE     ++L+ LL+   +      
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDEMGA------ 173

Query: 191 LALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYA 250
                +  +  + G          +     V+     LL+   + +    + G TP+  A
Sbjct: 174 -----DVNACDNMG-RNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILA 226

Query: 251 AYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS 299
               +   V  LLE +    N  D D K TAL LA      +  E +  
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 1e-18
 Identities = 57/295 (19%), Positives = 97/295 (32%), Gaps = 46/295 (15%)

Query: 72  KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEA 131
           + +  L  A +    ++V+ L+E              G     Q          T LH A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEG-------------GANVNFQE----EEGGWTPLHNA 46

Query: 132 VSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL 191
           V     D+V+ L       P      G TP  +AA   +   +   L +       D   
Sbjct: 47  VQMSREDIVE-LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF-- 103

Query: 192 ALLENSTSVSHEGPNGKTALHAAAMRSFAVD-------TALPKLLEKKKNLIKETDQYGW 244
                          G TA   AA+              A   L  K K   +   + G 
Sbjct: 104 --------------YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKD--RKMTALHLAAGKGDARTVERIISGNP 302
           T +  AA  G+   + +LL+   +  N  D      +    L++   D   +  ++  + 
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 303 KCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLA 357
               +   RG   L  A+   H+G ++ LLE   +    I++ D++G T L +  
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 2e-12
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 21/132 (15%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIERA-------------KLAQRGDEEPESGVEPFRQM 116
              G T L  AA+ GH E++++L++                L        +S VE    +
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 117 -------IRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYE 169
                  + +      T L  AV + ++ +V+ L  ++       ++ GKT L +A E  
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL- 263

Query: 170 NRSDMLRGLLEN 181
               +   L + 
Sbjct: 264 KLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 5e-09
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 23  DVIERLLT-------AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDT 75
           +V++ LL        A        +       ++   + +  +L    A +     +G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

Query: 76  PLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQG 135
           PL LA +  H  +V+ L+E+              +E     I   +++  TAL  AV   
Sbjct: 222 PLILAVEKKHLGLVQRLLEQE------------HIE-----INDTDSDGKTALLLAVELK 264

Query: 136 NVDVVKIL 143
              + ++L
Sbjct: 265 LKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 18  KDMERDVIERLLTAKAK--------NTILHINIISSERENVSTKFVEEILEKCPALLLQV 69
                 +   LL   A          T L +       E      V+ +LE+    +   
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILA-----VEKKHLGLVQRLLEQEHIEINDT 249

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIER 95
           ++ G T L LA +    +I  +L +R
Sbjct: 250 DSDGKTALLLAVELKLKKIAELLCKR 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.6 bits (208), Expect = 9e-19
 Identities = 39/327 (11%), Positives = 75/327 (22%), Gaps = 60/327 (18%)

Query: 17  FKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILE------KCPALLLQVN 70
           F+         L+T   K  I      +   E V                +  +   +  
Sbjct: 28  FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKG 87

Query: 71  AKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHE 130
            K +    +AA  G    +  L     L    +             ++++  E   A   
Sbjct: 88  IKSEVICFVAAITGCSSALDTLCL---LLTSDEI------------VKVIQAENYQAFRL 132

Query: 131 AVSQGNVDVVKILTREDPGYPYS-ANNYGKTPLYMAAEYENRSDMLRGLLENRTSA---- 185
           A   G++ V+  L    P    +           +AAE      +L  L E   +     
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN-GHLHVLNRLCELAPTEATAM 191

Query: 186 -----------------SFDMVLALLENSTSVSHEGPNGKTALHAA--------AMRSFA 220
                              +++  LL+    +++   +                  R   
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 251

Query: 221 VDTALPKL-----LEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET---DQSASNI 272
           +  A          +           Y    +           +  LL        A   
Sbjct: 252 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 311

Query: 273 ADKDRKMTALHLAAGKGDARTVERIIS 299
                    L LA   G+      ++S
Sbjct: 312 TIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.9 bits (170), Expect = 8e-14
 Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 7/218 (3%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLE 180
           N E +  L         ++ +     +     + +      +++        + +R LL 
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGT--KNMEQVRQLLC 66

Query: 181 NRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETD 240
              +          +  +    +G   +     AA+   +       LL     ++K   
Sbjct: 67  LYYA---HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 123

Query: 241 QYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS- 299
              +     AA  G+   +N L E   +      +     A  LAA  G    + R+   
Sbjct: 124 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 183

Query: 300 -GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP 336
                   +       F   A+   H   +  LL+   
Sbjct: 184 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 221

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 5e-09
 Identities = 41/282 (14%), Positives = 63/282 (22%), Gaps = 59/282 (20%)

Query: 6   FKAASAGNSEPFKDMERDVIERLLTAKAK--------NTILHINIISSERENVSTKFVEE 57
           F AA  G S        D +  LLT+                +       EN     +  
Sbjct: 95  FVAAITGCSSAL-----DTLCLLLTSDEIVKVIQAENYQAFRLAA-----ENGHLHVLNR 144

Query: 58  ILEKCPALLLQ-VNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQM 116
           + E  P  ++  + A+      LAA+ GH  ++  L E A        + E+        
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204

Query: 117 IRM-----------VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMA 165
           +                    A       G   V   + R                  ++
Sbjct: 205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR-----LKEMHDAFKLS 259

Query: 166 AEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSF--AVDT 223
                                FD+V        S   +G      L           +  
Sbjct: 260 NPD----------------GVFDLVTK------SECLQGFYMLRNLIRRNDEVLLDDIRF 297

Query: 224 ALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLET 265
            L     K               +  A   GN     LLL  
Sbjct: 298 LLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 3e-16
 Identities = 43/231 (18%), Positives = 75/231 (32%), Gaps = 26/231 (11%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
           N  +      G ++ +K     D       +   +T L+ A    +   +          
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF-------- 55

Query: 185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW 244
                                          + + A    + K L  K   +   +Q G 
Sbjct: 56  -----------LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC 104

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKC 304
           TP+HYAA    +    +LLE   +  +  D   + TA+H AA KG+ + +  ++      
Sbjct: 105 TPLHYAASKNRHEIAVMLLEGGANP-DAKDHY-EATAMHRAAAKGNLKMIHILLY-YKAS 161

Query: 305 YELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
             + D  G   LH A     V + + L+       + I   + E  TPL V
Sbjct: 162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQG----ASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 1e-15
 Identities = 55/246 (22%), Positives = 88/246 (35%), Gaps = 41/246 (16%)

Query: 55  VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFR 114
           ++E +    +L  + +    T LH A   GH EIV                    +    
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF------------------LLQLG 60

Query: 115 QMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDM 174
             +   ++   + LH A S G  ++VK L  +      + N  G TPL+ AA        
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNR---- 115

Query: 175 LRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN 234
                        ++ + LLE   +   +     TA+H AA +          +L   K 
Sbjct: 116 ------------HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM---IHILLYYKA 160

Query: 235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTV 294
                D  G TP+H A          LL+    S   I +K+ K T L +A G G    +
Sbjct: 161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEK-TPLQVAKG-GLGLIL 217

Query: 295 ERIISG 300
           +R++ G
Sbjct: 218 KRMVEG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 3e-10
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 54  FVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERA---------------KL 98
            + + L    A +  VN  G TPLH AA     EI  +L+E                 + 
Sbjct: 84  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 143

Query: 99  AQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYG 158
           A +G+ +    +  ++    + + E NT LH A  +  V+  K+L  +     Y  N   
Sbjct: 144 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIENKEE 202

Query: 159 KTPLYMAAEYENRSDMLRGLLE 180
           KTPL +A        +L+ ++E
Sbjct: 203 KTPLQVAK--GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 7e-09
 Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 7/174 (4%)

Query: 224 ALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALH 283
            L + +   K+L   TDQ   T +H+A   G+   V  LL+     ++  D       + 
Sbjct: 18  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 77

Query: 284 LAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLID 343
                     + + + G       V+  GC  LHYA           LLE      +  D
Sbjct: 78  ---ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG----ANPD 130

Query: 344 EGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNYGYTEL 397
             D    T +H  AA    +   ++     +      + N  +    +    E 
Sbjct: 131 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (183), Expect = 5e-16
 Identities = 41/250 (16%), Positives = 76/250 (30%), Gaps = 27/250 (10%)

Query: 69  VNAKGDTPLHLAAKFGHFEIVRVLIERAKL------------------AQRGDEEPESGV 110
           V   GDT LHLA    H   +  L+  +                    A  G+      +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 111 EPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYEN 170
                 + +     +TALH A          +L +  P +P  A++   T L  + +   
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TYLTQSQDCTP 121

Query: 171 RSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLE 230
            +      ++++ +   +      +    +  E  +G T               +  L +
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT--PLHVAVIHKDAEMVRLLRD 179

Query: 231 KKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKG 289
              +L K     G TP+H A        + LLL+    A           T L  A  + 
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--AGADPTARMYG-GRTPLGSALLRP 236

Query: 290 DARTVERIIS 299
           +      + +
Sbjct: 237 NPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 57  EILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIER-AKLAQRG 102
           E+L K  A        G TPL  A    +  + R+L    A   + G
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 308 VDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDV 367
           V   G   LH A++  H   L  LL  +      +D  +  G T LH LAA+  +     
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSA-GHEYLDLQNDLGQTALH-LAAILGEASTVE 62

Query: 368 MNRSTQANYDAVNKQNVSVRHV 389
              +  A      +   +  H+
Sbjct: 63  KLYAAGAGVLVAERGGHTALHL 84

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.7 bits (174), Expect = 9e-15
 Identities = 46/288 (15%), Positives = 78/288 (27%), Gaps = 46/288 (15%)

Query: 36  TILHINIISSERENVSTKFVEEILEKCPALLLQVNAK----GDTPLHLAAKFGHFEIVRV 91
           + + ++  ++    +     E I  +       VN        T LH  A     E    
Sbjct: 2   SPIKLHTEAAGSYAI----TEPITRES------VNIIDPRHNRTVLHWIASNSSAEKSED 51

Query: 92  LIERA--KLAQRG---------------------DEEPESGVEPFRQMIRMVNNEKNTAL 128
           LI     +    G                          + +        + N  + +AL
Sbjct: 52  LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 111

Query: 129 HEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFD 188
           H+A +  +  ++  +                    +     N         +        
Sbjct: 112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 171

Query: 189 MVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIH 248
           +     + +     E   G+TALH AA  S           +      +  D+ G TPI 
Sbjct: 172 VDY---DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ--DEDGKTPIM 226

Query: 249 YAAYYGNYRTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARTVE 295
            AA  G    V  L++  Q AS    D     TA  LA        V+
Sbjct: 227 LAAQEGRIEVVMYLIQ--QGASVEAVDATDH-TARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.0 bits (154), Expect = 4e-12
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 38/290 (13%)

Query: 74  DTPLHLA-AKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           ++P+ L     G + I   +   +                             T LH   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIID-------------------PRHNRTVLHWIA 41

Query: 133 SQGNVDVVKILTREDPGYPYSA-------NNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
           S  + +  + L   +     +A       +    TPL +A     R  ++  L++     
Sbjct: 42  SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADP 100

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
           +            + ++        +  +      ++      +     +     +    
Sbjct: 101 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 160

Query: 246 PIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCY 305
                   G     +     D      ++K +  TALH AA   +   V+ ++       
Sbjct: 161 SAKLLVEKGAKVDYDGAARKD------SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 214

Query: 306 ELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
           +  D  G   +  A     +  +  L++      + ++  DA  +T   +
Sbjct: 215 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.7 bits (143), Expect = 9e-11
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 18/97 (18%)

Query: 49  NVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPES 108
             +   V+ ++ +  +   + +  G TP+ LAA+ G  E+V  LI++             
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ------------- 243

Query: 109 GVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTR 145
           G       +  V+   +TA   A +  + ++V I  R
Sbjct: 244 GAS-----VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 20/157 (12%), Positives = 41/157 (26%), Gaps = 32/157 (20%)

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKC 304
           +PI           +   +   + + NI D     T LH  A    A   E +I      
Sbjct: 2   SPIKLHTEAAGSYAITEPI--TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV---HE 56

Query: 305 YELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEF 364
            +     G +                           ++  D + NTPL +    R +  
Sbjct: 57  AKECIAAGAD---------------------------VNAMDCDENTPLMLAVLARRRRL 89

Query: 365 HDVMNRSTQANYDAVNKQNVSVRHVFNYGYTELKVII 401
              + ++          +  ++          + V +
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 4e-13
 Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 20/215 (9%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYEN-------------- 170
           N  LH+A  +     V+ L    P      +  G+ PL+ +  ++               
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 171 -----RSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTAL 225
                  D          S     V+  L +              +    +        +
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 226 PKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLA 285
            + L +    ++  D++   P+H AA  G+ + + LL    +SA N  DK +  T L  A
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHA 179

Query: 286 AGKGDARTVERIISGNPKCYELVDNRGCNFLHYAM 320
             +G       ++      Y+LVDN+G      A+
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 45/252 (17%), Positives = 74/252 (29%), Gaps = 38/252 (15%)

Query: 35  NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
           N  LH   + +         V+E+L   P+LLLQ +  G  PLH +  F   EI   L+ 
Sbjct: 1   NYPLHQACMEN-----EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 95  RAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSA 154
                 + +                                                   
Sbjct: 56  ------KMENVNLDDYPDDSGWTPFHIACSV------------------------GNLEV 85

Query: 155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAA 214
                         +  +  +  L        F++   L+EN  SV  +    +  LH A
Sbjct: 86  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 145

Query: 215 AMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIAD 274
           A         L       K+ +   D+ GWTP+ +A   G+     LL+E   +  ++ D
Sbjct: 146 ASVGSLKLIELLC--GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 203

Query: 275 KDRKMTALHLAA 286
                 A  +A 
Sbjct: 204 NKGA-KAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 1/80 (1%)

Query: 245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKC 304
            P+H A     +  V  LL +  S     D+D     LH +           ++S     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 305 YELVDNRGCNFLHYAMVSFH 324
                     +  + +    
Sbjct: 61  NLDDYPDDSGWTPFHIACSV 80

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 40/216 (18%)

Query: 209 TALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQS 268
             LH A M +      + +LL  K +L+ + DQ G  P+H++  +  +   + LL   ++
Sbjct: 2   YPLHQACMENEF--FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 269 ASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYEL--------------------- 307
            +     D         A       V + +   P   +L                     
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 308 --------------VDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPL 353
                          D      LH A     +  +  L        S ++  D +G TPL
Sbjct: 120 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPL 176

Query: 354 HVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHV 389
               A    +   ++     A YD V+ +      V
Sbjct: 177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 2e-12
 Identities = 42/242 (17%), Positives = 76/242 (31%), Gaps = 38/242 (15%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           GDTPLH+A   G+   V  L+             + G E     + + NN + T LH AV
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNL---------FQQGGRE-----LDIYNNLRQTPLHLAV 48

Query: 133 SQGNVDVVKILTREDPGY----------PYSANNYGKT----------PLYMAAEYENRS 172
                 VV++L                  + A  +                         
Sbjct: 49  ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 108

Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK 232
           D L  L     +   + V  LLE    +         +    A+ +     ++ +LL + 
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN--SLSMVQLLLQH 166

Query: 233 KNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR 292
              +      G + +H A+  G    V  L+ +   + ++ +     T L +A  +    
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHND-TPLMVARSRRVID 224

Query: 293 TV 294
            +
Sbjct: 225 IL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 8e-10
 Identities = 48/234 (20%), Positives = 76/234 (32%), Gaps = 24/234 (10%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGY---PYSANNYGKTPLYMAAEYENRSDMLRGLLEN 181
           +T LH AV QGN+  V  L              NN  +TPL++A      S +   +   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 182 RTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQ 241
            +  + D                     A  A   RS     AL          ++  + 
Sbjct: 64  ASPMALDR---------------HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 108

Query: 242 YGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGN 301
            G T +H A       TV LLLE       +  K  +   L  A        V+ ++   
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP-LIHAVENNSLSMVQLLLQHG 167

Query: 302 PKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
                 + + G + LH A     +  +R L+ +     +     +   +TPL V
Sbjct: 168 ANVNAQMYS-GSSALHSASGRGLLPLVRTLVRSG----ADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 18/88 (20%)

Query: 54  FVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPF 113
            + ++L +  A +      G + LH A+  G   +VR L+               G +  
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-------------GAD-- 202

Query: 114 RQMIRMVNNEKNTALHEAVSQGNVDVVK 141
                + N   +T L  A S+  +D+++
Sbjct: 203 ---SSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 2/133 (1%)

Query: 206 NGKTALHAAAMR-SFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
           +G T LH A ++ +      L  L ++    +   +    TP+H A        V LL+ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 265 TDQSASNIADKDRKMTALHLAAGKGDARTVERI-ISGNPKCYELVDNRGCNFLHYAMVSF 323
              S   +    +    L                 +      E  +  G   LH A+ + 
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 324 HVGQLRNLLENNP 336
               ++ LLE   
Sbjct: 122 CQETVQLLLERGA 134

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.4 bits (142), Expect = 7e-11
 Identities = 30/212 (14%), Positives = 61/212 (28%), Gaps = 4/212 (1%)

Query: 51  STKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGV 110
           + + + ++L +   L   ++  G+T LHLAA+F   +  + L++    A   D    + +
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 111 EPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYEN 170
                   M   +             +                                +
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 120

Query: 171 RSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLE 230
            S     L       + + V  LL +  +   +    +T L    + +        K L 
Sbjct: 121 NSGK-TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF---LAAREGSYEASKALL 176

Query: 231 KKKNLIKETDQYGWTPIHYAAYYGNYRTVNLL 262
                 + TD     P   A+   ++  V LL
Sbjct: 177 DNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 9e-09
 Identities = 34/226 (15%), Positives = 60/226 (26%), Gaps = 39/226 (17%)

Query: 87  EIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRE 146
           +++  L+ +             G E        ++    T+LH A      D  K L   
Sbjct: 3   QVISDLLAQ-------------GAELNAT----MDKTGETSLHLAARFARADAAKRLLDA 45

Query: 147 DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVL--------------- 191
                   N          A        +          +                    
Sbjct: 46  GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGM 105

Query: 192 --ALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHY 249
              L+     ++    +GKTALH AA  +      +  +    ++     D    TP+  
Sbjct: 106 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPLFL 162

Query: 250 AAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVE 295
           AA  G+Y     LL+   +   I D         +A+ +     V 
Sbjct: 163 AAREGSYEASKALLDNFANR-EITDHM-DRLPRDVASERLHHDIVR 206

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 228 LLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAG 287
           LL +   L    D+ G T +H AA +        LL+    A++  +  R      +AA 
Sbjct: 8   LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 67

Query: 288 KGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDA 347
                 +            + D      L   +    +       E+   A + I+  D 
Sbjct: 68  AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMV------EDLITADADINAADN 121

Query: 348 EGNTPLH 354
            G T LH
Sbjct: 122 SGKTALH 128

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 35  NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVL 92
            T L +       E        + L    A     +     P  +A++  H +IVR+L
Sbjct: 157 ETPLFLAAREGSYEAS------KALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.1 bits (144), Expect = 9e-11
 Identities = 43/259 (16%), Positives = 71/259 (27%), Gaps = 28/259 (10%)

Query: 68  QVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTA 127
           +V          A   G  E V  L+ER             G +     I   N +  TA
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLER-------------GAD-----INYANVDGLTA 76

Query: 128 LHEAVSQGNVDVV-KILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSAS 186
           LH+A    NVD+V  ++             +       +  Y + ++ L     +  + +
Sbjct: 77  LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136

Query: 187 FDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVD------TALPKLLEKKKNLIKETD 240
            +    L         E    +       + +   +          + L           
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196

Query: 241 QYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISG 300
           + G T +H AA  G    + LL                 T LH AA  G       ++  
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLL--IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 301 NPKCYELVDNRGCNFLHYA 319
                E V+  G      A
Sbjct: 255 LCD-MEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.3 bits (129), Expect = 6e-09
 Identities = 46/269 (17%), Positives = 78/269 (28%), Gaps = 16/269 (5%)

Query: 94  ERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS 153
           E+ K     + + E  V   ++    V  +       A S G+ + V  L          
Sbjct: 12  EQLKRWIGSETDLEPPVV--KRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG-ADINY 68

Query: 154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHA 213
           AN  G T L+ A   +N   +   +         D    +  ++ +        +  +  
Sbjct: 69  ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128

Query: 214 AAMRSFAVDTALPKLLEKKKNLIKETDQYGW-------TPIHYAAYYGNYRTVNLLLETD 266
            A            L   ++  ++E  Q                      R     L + 
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188

Query: 267 QSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVG 326
                   K    TALH+AA KG    ++ +I        + D  G   LH A       
Sbjct: 189 HINDVRHAKS-GGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEE 246

Query: 327 QLRNLLENNPLARSLIDEGDAEGNTPLHV 355
             R L+EN       ++  +  G T   V
Sbjct: 247 ACRILVENL----CDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 19/130 (14%)

Query: 38  LHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAK 97
           + I     E E +  +   + L       ++    G T LH+AA  G+ E++++LI    
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI---- 219

Query: 98  LAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNY 157
                           R  + + + +  T LH A   G  +  +IL         + N  
Sbjct: 220 --------------QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKV 264

Query: 158 GKTPLYMAAE 167
           G+T   +A E
Sbjct: 265 GQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 28/114 (24%)

Query: 30  TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIV 89
            AK+  T LH+       E +      ++L +    +   +  G TPLH AA +G  E  
Sbjct: 195 HAKSGGTALHVAAAKGYTEVL------KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 90  RVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKIL 143
           R+L+E                +     +  VN    TA   A      D++  L
Sbjct: 249 RILVEN-------------LCD-----MEAVNKVGQTAFDVADE----DILGYL 280

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 3e-10
 Identities = 32/215 (14%), Positives = 57/215 (26%), Gaps = 40/215 (18%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
           GD+ LHLA       +   +I   ++                  +   NN + T LH AV
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIR--QVKGDLAF------------LNFQNNLQQTPLHLAV 47

Query: 133 SQGNVDVVKILTREDPGYPYSANNYG-----------KTPLYMAAEYENRSDMLRGLLEN 181
                ++ + L                             + +  +      +   L   
Sbjct: 48  ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 107

Query: 182 RTSASFDMVLALLENSTSV------------SHEGPNGKTALHAAAMRSFAVDTALPKLL 229
             +    + LA +     +            + E  NG+TALH  A+     D     L 
Sbjct: 108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH-LAVDLQNPDLVSLLLK 166

Query: 230 EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
                        G++P        + R    L +
Sbjct: 167 CGADVNRV--TYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 4e-08
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 3/194 (1%)

Query: 206 NGKTALHAAAMR-SFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
           +G + LH A +    A+   + + ++     +   +    TP+H A           LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 265 TDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH 324
                     +      L    G   +  V       P  + ++     N      ++  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 325 VGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNV 384
            G L  +     L   +  +    G T LH+   ++  +   ++ +   A+ + V  Q  
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGY 179

Query: 385 SVRHV-FNYGYTEL 397
           S   + +    T +
Sbjct: 180 SPYQLTWGRPSTRI 193

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 30/212 (14%)

Query: 125 NTALHEAVSQGNVDVVKILTR---EDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLEN 181
           ++ LH A+      +   + R    D  +    NN  +TPL++A            L   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 182 RTSASFDMV-----------------------LALLENSTSVSHEGPNGKTALHAAAMRS 218
                 D                                + +     NG T LH A++  
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 219 FAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRK 278
           +     L        ++  +    G T +H A    N   V+LLL+      N       
Sbjct: 123 YLGIVELLV--SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQ-G 178

Query: 279 MTALHLAAGKGDARTVERIISGNPKCYELVDN 310
            +   L  G+   R  +++     +  +++  
Sbjct: 179 YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 5e-06
 Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 18/204 (8%)

Query: 158 GKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH-AAAM 216
           G + L++A  +               + + +++  +  +   ++ +    +T LH A   
Sbjct: 2   GDSFLHLAIIH------------EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

Query: 217 RSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKD 276
               +  AL       +      +                            +   A   
Sbjct: 50  NQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 109

Query: 277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNP 336
              T LHLA+  G    VE ++S            G   LH A+   +   +  LL+   
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG- 168

Query: 337 LARSLIDEGDAEGNTPLHVLAAVR 360
              + ++    +G +P   L   R
Sbjct: 169 ---ADVNRVTYQGYSPYQ-LTWGR 188

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 35  NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
            T LH+ +     + VS         KC A + +V  +G +P  L        I + L +
Sbjct: 146 RTALHLAVDLQNPDLVSLLL------KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

Query: 95  RAKLAQRGDEEPES 108
                +     PES
Sbjct: 200 --LTLENLQMLPES 211

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-09
 Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 20/156 (12%)

Query: 125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTS 184
              L  A ++G+V  V+ L   +  +P + N +GKT L +         +         +
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 185 ASFDMVLALLENSTS----------------VSHEGPNGKTALHAAAMRSFAVDTALPKL 228
                  + + ++                  V+     G   +H A         +    
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF--- 119

Query: 229 LEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
               ++ +   D  G TP+  A   G    V++L  
Sbjct: 120 -LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 62  CPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIE 94
             + L + +A+G TPL LA + G  ++V +L  
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 6e-09
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 21/149 (14%)

Query: 121 NNEKNTALHEAVSQGNVDVVKILTRE-----DPGYPYSANNYGKTPLYMAAEYENRSDML 175
              K  +L EAV   ++  +     +     +     + +   +T L++A    +R+   
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT--- 59

Query: 176 RGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNL 235
                     S  +V  L++NS ++  +   G TALH   +   A    L    +    +
Sbjct: 60  ----------SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 109

Query: 236 IKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
               ++ G TP+  A    +     LL +
Sbjct: 110 A---NESGETPLDIAKRLKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 18/130 (13%)

Query: 32  KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF---GHFEI 88
            AK   L   + + +   +   + + +       L   +   +T LHLA +        I
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 89  VRVLIE---------------RAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVS 133
           V  L++                       + E    +   +  I + N    T L  A  
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123

Query: 134 QGNVDVVKIL 143
             +    ++L
Sbjct: 124 LKHEHCEELL 133

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 16/156 (10%)

Query: 206 NGKTALHAAAMRSFAVD-TALPKLLEK-----KKNLIKETDQYGWTPIHYAAYYGNYRTV 259
           +    LH+        D   L +         +K  +    +   T +H A    +  ++
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 260 NLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYA 319
           +++    Q++ N+  +  K +         D     +++       E+ +  G   L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 320 MVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHV 355
               H                L        N+ +HV
Sbjct: 122 KRLKHEH----------CEELLTQALSGRFNSHVHV 147

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 70  NAKGDTPLHLAAKFGHFEIVRVLIE 94
           N  G+TPL +A +  H     +L +
Sbjct: 111 NESGETPLDIAKRLKHEHCEELLTQ 135

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (116), Expect = 7e-08
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 22/157 (14%)

Query: 123 EKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENR 182
           +    L EA   G  D V+IL     G P++ +  G +PL++AA+Y + S     L    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 183 TSASFDMVLALLENST-----------------SVSHEGPNGKTALHAAAMRSFAVDTAL 225
           +  +   V     +                    V+ +     TALH A   +      +
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH---QEV 115

Query: 226 PKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLL 262
            +LL K    +    ++  T    +   GN     +L
Sbjct: 116 VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 53  KFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVL 92
           + V E+L K  A +   +    T   ++   G+ ++  +L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 117 IRMVNNEKNTALHEAVSQGNVDVVKIL 143
           +   +    TA   ++  GN D+ +IL
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-07
 Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 13/152 (8%)

Query: 126 TALHEAVSQGNVDVVKIL-------------TREDPGYPYSANNYGKTPLYMAAEYENRS 172
             L  A ++G+++ +  L              R         N      L +     +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 173 DMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK 232
           D     + +  + +  +                + +  L             +  L++  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 233 KNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE 264
            + +   +  G T    A  YG    V+L+  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 68  QVNAKGDTPLHLAAKFGHFEIVRVLIER 95
             N KGDT   LA  +G  E+V ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 4/144 (2%)

Query: 75  TPLHLAAKFGHFEIVRVLIER-AKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVS 133
             L  AA  G  E +  L++    +  +      +          +         +  + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 134 QGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLAL 193
                 V                          + E    +     E        +V   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV--- 119

Query: 194 LENSTSVSHEGPNGKTALHAAAMR 217
              +++V H    G TA   A + 
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLY 143

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 112 PFRQMIRMVNNEKNTALHEAVSQGNVDVVKIL 143
                +   N++ +TA   A   G  +VV ++
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (101), Expect = 3e-06
 Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 19/122 (15%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV 132
            D     A K G  + V+  + + +   R  E     +       ++   E        +
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 133 --------------SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGL 178
                                   L              G T L         +  ++ L
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD-----NQAIKAL 116

Query: 179 LE 180
           L+
Sbjct: 117 LQ 118

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 8e-05
 Identities = 22/139 (15%), Positives = 35/139 (25%), Gaps = 20/139 (14%)

Query: 126 TALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSA 185
             L  A ++G V+ V+ L   + G   +A N             +       LL      
Sbjct: 5   DWLATAAARGRVEEVRALL--EAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 186 SFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWT 245
             D          +      +    LH A  R                  +   D +G  
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGAR------------------LDVRDAWGRL 104

Query: 246 PIHYAAYYGNYRTVNLLLE 264
           P+  A   G+      L  
Sbjct: 105 PVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 2e-04
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIERA 96
           G  P+ LA + GH ++ R L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 3e-04
 Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 15/122 (12%)

Query: 73  GDTPLHLAAKFGHFEIVRVLIE--------------RAKLAQRGDEEPESGVEPFRQMIR 118
               L  AA  G  E VR L+E                ++   G       +        
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 119 MVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGL 178
             +    T      ++       ++           + +G+ P+ +A E     D+ R L
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL-GHRDVARYL 121

Query: 179 LE 180
             
Sbjct: 122 RA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-54  Score=382.47  Aligned_cols=356  Identities=23%  Similarity=0.268  Sum_probs=312.8

Q ss_pred             hhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHH
Q 015738            3 LNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK   82 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~   82 (401)
                      ||||.||..|++++|++|+++|.+.+..+..|+||||+|  +..|+.+++++|++    .|++++.++.+|.||||+|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A--~~~g~~~iv~~Ll~----~gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHH
Confidence            899999999999999999999988888888899999999  99999999999999    689999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhhccCCCCCCCCchh---------------hHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcC
Q 015738           83 FGHFEIVRVLIERAKLAQRGDEEPESGVEP---------------FRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRED  147 (401)
Q Consensus        83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  147 (401)
                      .|+.+++++|+..+++..............               ........+..+.++++.|+..++.+++++|++++
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999887654433322211110               01112345778999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHH
Q 015738          148 PGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPK  227 (401)
Q Consensus       148 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  227 (401)
                      ... ...+..+.+||++|+.                .++.+++++|+..|++++..+..|.+|+|.+...  ...+....
T Consensus       156 ~~~-~~~~~~~~~~L~~A~~----------------~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~--~~~~~~~~  216 (408)
T d1n11a_         156 AHP-NAAGKNGLTPLHVAVH----------------HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ--NQVEVARS  216 (408)
T ss_dssp             CCT-TCCCSSCCCHHHHHHH----------------TTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT--TCHHHHHH
T ss_pred             CCC-CcCCCcCchHHHHHHH----------------cCCHHHHHHHHhcCCcccccCCCCCCcchhhhcc--chhhhhhh
Confidence            885 4677889999999998                3489999999999999999999999999999987  67777777


Q ss_pred             HHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccc
Q 015738          228 LLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYEL  307 (401)
Q Consensus       228 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~  307 (401)
                      ++..... ....+..+.|||++|+..++.++++++.+.+... ...+. .|.||++.|+..++.+++++|+++|.+ ++.
T Consensus       217 l~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~  292 (408)
T d1n11a_         217 LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVM-VDA  292 (408)
T ss_dssp             HHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCC-TTC
T ss_pred             hhhcccc-ccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccC-CCCChhhhhhhcCcHHHHHHHHHCCCc-ccc
Confidence            7666554 5566778999999999999999999999988766 33333 788999999999999999999999988 678


Q ss_pred             cCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhhhccCccee
Q 015738          308 VDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAVNKQNVSVR  387 (401)
Q Consensus       308 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  387 (401)
                      .+..+.||||.++..++.++++++++    .|+++|.+|..|+||||+|++.|+.+++++|++. |||++.+|.+|+|||
T Consensus       293 ~~~~~~t~L~~~~~~~~~~~~~~ll~----~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~~G~t~L  367 (408)
T d1n11a_         293 TTRMGYTPLHVASHYGNIKLVKFLLQ----HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPL  367 (408)
T ss_dssp             CCSSCCCHHHHHHHSSCSHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHH
T ss_pred             ccccccccchhhcccCcceeeeeecc----ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            88999999999999999999999999    8999999999999999999999999999999976 999999999999999


Q ss_pred             eeeec
Q 015738          388 HVFNY  392 (401)
Q Consensus       388 ~~a~~  392 (401)
                      |+|.+
T Consensus       368 ~~A~~  372 (408)
T d1n11a_         368 AIAKR  372 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99944

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-46  Score=332.05  Aligned_cols=333  Identities=26%  Similarity=0.289  Sum_probs=289.0

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHH----------------------
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEIL----------------------   59 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~----------------------   59 (401)
                      +||||+||+.|+.+++++|+++|++....+..|.||||+|  +..|+.+++++|+...                      
T Consensus        34 ~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A--~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  111 (408)
T d1n11a_          34 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA--ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH  111 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH--HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcc
Confidence            5899999999999999999999998888888899999999  9999999999998641                      


Q ss_pred             -------hhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHH
Q 015738           60 -------EKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAV  132 (401)
Q Consensus        60 -------~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  132 (401)
                             ...+......+..+.++|+.|+..++.+++++|+++|+++                  +..+.+|.+|||+|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~------------------~~~~~~~~~~L~~A~  173 (408)
T d1n11a_         112 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP------------------NAAGKNGLTPLHVAV  173 (408)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCSSCCCHHHHHH
T ss_pred             cccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC------------------CcCCCcCchHHHHHH
Confidence                   1222334456788999999999999999999999999874                  566778999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHh
Q 015738          133 SQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALH  212 (401)
Q Consensus       133 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~  212 (401)
                      ..|+.+++++|+++|++. ...+..|.||++.+..                ....+....++..+......+..+.||++
T Consensus       174 ~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  236 (408)
T d1n11a_         174 HHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAK----------------QNQVEVARSLLQYGGSANAESVQGVTPLH  236 (408)
T ss_dssp             HTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHH----------------TTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HcCCHHHHHHHHhcCCcc-cccCCCCCCcchhhhc----------------cchhhhhhhhhhccccccccCCCCCCHHH
Confidence            999999999999999884 4778889999999998                33788999999999988888999999999


Q ss_pred             HHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHH
Q 015738          213 AAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR  292 (401)
Q Consensus       213 ~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~  292 (401)
                      .|+..  +..+.+..++.... ..+..+..|.||++.|+..++.+++++|++.|++.. .... .+.||||.++..++.+
T Consensus       237 ~a~~~--~~~~~~~~~~~~~~-~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~-~~~~-~~~t~L~~~~~~~~~~  311 (408)
T d1n11a_         237 LAAQE--GHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTR-MGYTPLHVASHYGNIK  311 (408)
T ss_dssp             HHHHT--TCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCS-SCCCHHHHHHHSSCSH
T ss_pred             HHHHh--CcHhHhhhhhcccc-ccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccc-cccc-cccccchhhcccCcce
Confidence            99988  77788887776654 467788899999999999999999999999998873 3333 6789999999999999


Q ss_pred             HHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHh--
Q 015738          293 TVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNR--  370 (401)
Q Consensus       293 ~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--  370 (401)
                      +++++++.|.+ ++.+|..|+||||+|++.|+.+++++|++    .|++++.+|.+|+||||+|++.|+.+++++|..  
T Consensus       312 ~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~----~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~  386 (408)
T d1n11a_         312 LVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK----NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT  386 (408)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             eeeeecccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999988 68899999999999999999999999999    899999999999999999999999999985532  


Q ss_pred             hcCCChhhhhc
Q 015738          371 STQANYDAVNK  381 (401)
Q Consensus       371 ~~~~~~~~~~~  381 (401)
                      ..+.+....+.
T Consensus       387 ~~~~~~~~~~~  397 (408)
T d1n11a_         387 DETSFVLVSDK  397 (408)
T ss_dssp             CCCSSCC----
T ss_pred             hcccccccccc
Confidence            24555555543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-38  Score=261.70  Aligned_cols=247  Identities=20%  Similarity=0.145  Sum_probs=176.7

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhc
Q 015738           67 LQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRE  146 (401)
Q Consensus        67 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  146 (401)
                      ...+.+|.||||+||+.|+.+++++|+++|+++.               .++.+|..|.||||+|+..|+.+++++|+++
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~---------------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~   67 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---------------YLDLQNDLGQTALHLAAILGEASTVEKLYAA   67 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG---------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc---------------cccCcCCCCCCccchHHhhcccccccccccc
Confidence            4578999999999999999999999999998742               2567788999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHH
Q 015738          147 DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALP  226 (401)
Q Consensus       147 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  226 (401)
                      |+++ ...+..|.|||++|+.                .+..++++.|++.+.......   ..........  ....   
T Consensus        68 ga~i-~~~d~~g~tpL~~A~~----------------~~~~~~~~~Ll~~~~~~~~~~---~~~~~~~~~~--~~~~---  122 (255)
T d1oy3d_          68 GAGV-LVAERGGHTALHLACR----------------VRAHTCACVLLQPRPSHPRDA---SDTYLTQSQD--CTPD---  122 (255)
T ss_dssp             TCCS-SCCCTTSCCHHHHHTT----------------TTCHHHHHHHSSSCCSSCCCC----------------------
T ss_pred             cccc-cccccccchhhhhhhc----------------cCchHHHHHHHhhccchhccc---chhhhhHHhh--hccc---
Confidence            9885 4788999999999998                337889999988765433211   1111111000  0000   


Q ss_pred             HHHHhhcccccccccCCCcHHHHHHHc-CCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCc
Q 015738          227 KLLEKKKNLIKETDQYGWTPIHYAAYY-GNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCY  305 (401)
Q Consensus       227 ~ll~~~~~~~~~~~~~~~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~  305 (401)
                                     ....++...... ............+... +.. ...|.||||+|+..++.+++++|++.+....
T Consensus       123 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-n~~-d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~  185 (255)
T d1oy3d_         123 ---------------TSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAE-NYDGHTPLHVAVIHKDAEMVRLLRDAGADLN  185 (255)
T ss_dssp             ------------------------------------CCCGGGGT-TCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             ---------------chHHHHHHHhhcchhHHHHHHhhhcCccc-ccc-cccCcccccccccccccccccchhccccccc
Confidence                           000001111010 0111122222222222 222 3478899999999999999999998888866


Q ss_pred             cccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCC
Q 015738          306 ELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQAN  375 (401)
Q Consensus       306 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  375 (401)
                      ..++..|.||||+|++.++.+++++|++    .|++++.+|..|+||||+|+..++.+++++|+++ ||+
T Consensus       186 ~~~~~~g~TpL~~A~~~~~~~~v~~Ll~----~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         186 KPEPTCGRTPLHLAVEAQAASVLELLLK----AGADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAP  250 (255)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCC
T ss_pred             ccccccccccccccccccHHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCC
Confidence            6677889999999999999999999998    7899999999999999999999999999999866 886

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=260.14  Aligned_cols=266  Identities=23%  Similarity=0.250  Sum_probs=222.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 015738           73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPY  152 (401)
Q Consensus        73 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  152 (401)
                      +.|+||+|+++|+.++|++|+++|++++.                 ..+..|.||||+|+..|+.+++++|++.+.... 
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~-----------------~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-   66 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNF-----------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-   66 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCc-----------------cCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-
Confidence            57999999999999999999999998532                 224579999999999999999999999998844 


Q ss_pred             CCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhh
Q 015738          153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK  232 (401)
Q Consensus       153 ~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~  232 (401)
                      ..+..+.+|.+.+..                .+..+.....++...+....+..+.++++.++..  +....+..++...
T Consensus        67 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~~~~~~  128 (285)
T d1wdya_          67 LRKKNGATPFLLAAI----------------AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY--GKVKALKFLYKRG  128 (285)
T ss_dssp             CCCTTCCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT--TCHHHHHHHHHTT
T ss_pred             ccccccchhhHHHhh----------------cCCccccchhhhhcccccccccCCCchhHHHHHh--cchhhhhhhhhhc
Confidence            667788999999887                2378888888888888888888999999999988  7777777777643


Q ss_pred             cc---------cccccccCCCcHHHHHHHcCCHHHHHHHHhc-CccccccccCCCCchHHHHHHh----cCCHHHHHHhh
Q 015738          233 KN---------LIKETDQYGWTPIHYAAYYGNYRTVNLLLET-DQSASNIADKDRKMTALHLAAG----KGDARTVERII  298 (401)
Q Consensus       233 ~~---------~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~g~t~L~~a~~----~~~~~~~~~Ll  298 (401)
                      ..         ........|.||||+|+++|+.+++++|++. |.++ ...+. .|.++++.+..    .+..+++++|+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Li  206 (285)
T d1wdya_         129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITHLLL  206 (285)
T ss_dssp             CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHH
T ss_pred             ccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccC-CCCcccccccccccchHHHHHHHHHH
Confidence            32         1233456689999999999999999999976 4444 33333 56666665543    33467999999


Q ss_pred             hcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhh
Q 015738          299 SGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDA  378 (401)
Q Consensus       299 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  378 (401)
                      ++|++ ++.++..|.||||+|++.++.+++++|++.   .|++++.+|..|.||||+|++.|+.+++++||+. |||+|.
T Consensus       207 ~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~---~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~-GAd~n~  281 (285)
T d1wdya_         207 DHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDC  281 (285)
T ss_dssp             HTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCC
T ss_pred             HCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHc---CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCc
Confidence            99988 688999999999999999999999999983   4899999999999999999999999999999966 999999


Q ss_pred             hhc
Q 015738          379 VNK  381 (401)
Q Consensus       379 ~~~  381 (401)
                      +|.
T Consensus       282 ~d~  284 (285)
T d1wdya_         282 GDL  284 (285)
T ss_dssp             SSC
T ss_pred             ccC
Confidence            884

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-37  Score=254.42  Aligned_cols=227  Identities=19%  Similarity=0.118  Sum_probs=163.2

Q ss_pred             hccCCCChHHHHHHHcCCHHHHHHHHhcCCCC--CCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhc
Q 015738          119 MVNNEKNTALHEAVSQGNVDVVKILTREDPGY--PYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLEN  196 (401)
Q Consensus       119 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~  196 (401)
                      ..+.+|.||||+|++.|+.+++++|+++|++.  ....+..|.||||+|+.                .++.+++++|++.
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~----------------~g~~~iv~~Ll~~   67 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI----------------LGEASTVEKLYAA   67 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHT
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHh----------------hcccccccccccc
Confidence            46789999999999999999999999998663  33567889999999998                3389999999999


Q ss_pred             CCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCC
Q 015738          197 STSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKD  276 (401)
Q Consensus       197 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  276 (401)
                      |++++..+..|.||||+|+..  ++.+.++.+++......    ......+..........                   
T Consensus        68 ga~i~~~d~~g~tpL~~A~~~--~~~~~~~~Ll~~~~~~~----~~~~~~~~~~~~~~~~~-------------------  122 (255)
T d1oy3d_          68 GAGVLVAERGGHTALHLACRV--RAHTCACVLLQPRPSHP----RDASDTYLTQSQDCTPD-------------------  122 (255)
T ss_dssp             TCCSSCCCTTSCCHHHHHTTT--TCHHHHHHHSSSCCSSC----CCC---------------------------------
T ss_pred             cccccccccccchhhhhhhcc--CchHHHHHHHhhccchh----cccchhhhhHHhhhccc-------------------
Confidence            999999999999999999988  77788888776543321    11111111111100000                   


Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccC-CCCCCcHHHH
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEG-DAEGNTPLHV  355 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~t~L~~  355 (401)
                      ....++..............+.......++.++..|.||||+|++.++.+++++|++    .+++++.. +..|.||||+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~TpL~~  198 (255)
T d1oy3d_         123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD----AGADLNKPEPTCGRTPLHL  198 (255)
T ss_dssp             ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHH
T ss_pred             chHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhc----ccccccccccccccccccc
Confidence            011111111111111222222222233367889999999999999999999999999    67777754 6789999999


Q ss_pred             HHHhCChhHHHHHHhhcCCChhhhhccCcceeeeee
Q 015738          356 LAAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       356 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  391 (401)
                      |+..++.+++++|++. |+|++.+|..|.||||+|.
T Consensus       199 A~~~~~~~~v~~Ll~~-gadin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         199 AVEAQAASVLELLLKA-GADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             cccccHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence            9999999999999975 9999999999999999984

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=238.86  Aligned_cols=220  Identities=26%  Similarity=0.291  Sum_probs=175.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 015738           73 GDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPY  152 (401)
Q Consensus        73 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  152 (401)
                      +.+.|+.+|..|+.+.|+.++..+...                 ++.+|..|+||||+|+..|+.+++++|++.+.... 
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~-----------------~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-   64 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSL-----------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-   64 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGG-----------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCc-----------------CcCcCCCCCCHHHHHHHhhhhcccccccccccccc-
Confidence            468889999999999998888766544                 67888999999999999999999999998887744 


Q ss_pred             CCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhh
Q 015738          153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKK  232 (401)
Q Consensus       153 ~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~  232 (401)
                      ..+..+.++++.++.                .++.+++++|++.|++++..                             
T Consensus        65 ~~~~~~~~~~~~~~~----------------~~~~~i~~~Ll~~~~d~~~~-----------------------------   99 (223)
T d1uoha_          65 DKDDAGWSPLHIAAS----------------AGRDEIVKALLGKGAQVNAV-----------------------------   99 (223)
T ss_dssp             CCCTTCCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCC-----------------------------
T ss_pred             ccccccccccccccc----------------ccccchhHHHhccCceeEee-----------------------------
Confidence            555567788888877                23677888888777665443                             


Q ss_pred             cccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCC
Q 015738          233 KNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRG  312 (401)
Q Consensus       233 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  312 (401)
                             +..|.||||+|+..|+.+++++|++.|.++ ...+. .|.||||.|+..++.+++++|++.+.+ ++.+|..|
T Consensus       100 -------d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~-~~~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g  169 (223)
T d1uoha_         100 -------NQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDH-YEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEG  169 (223)
T ss_dssp             -------CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTC
T ss_pred             -------CCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCccchhhhhcCCcchhhhhccccce-eeeccCCC
Confidence                   445666677777777788888888887776 33333 677888888888888888888887777 67888889


Q ss_pred             CcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          313 CNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNR  370 (401)
Q Consensus       313 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  370 (401)
                      +||||+|+..++.+++++|++    .|++++.+|..|+||||+| ..|+.+++++|++
T Consensus       170 ~TpL~~Aa~~g~~~~v~~LL~----~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         170 NTPLHLACDEERVEEAKLLVS----QGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CceeccccccCcHHHHHHHHH----CCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            999999999999999999998    7888999999999999987 4688888888873

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=239.13  Aligned_cols=212  Identities=23%  Similarity=0.281  Sum_probs=168.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCC
Q 015738          125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEG  204 (401)
Q Consensus       125 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~  204 (401)
                      .+.++.++..|+.+.++.+++..+......|..|+||||+|+.                .++.+++++++..+..     
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~----------------~g~~e~~~~l~~~~~~-----   62 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACS----------------AGHTEIVEFLLQLGVP-----   62 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHHTCC-----
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHH----------------hhhhcccccccccccc-----
Confidence            3556666666666666555555544455555555555555555                1245555554443332     


Q ss_pred             CCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHH
Q 015738          205 PNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHL  284 (401)
Q Consensus       205 ~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~  284 (401)
                                                     ....+..+.++++.++..++.+++++|++.++++ +..+. .|.||||+
T Consensus        63 -------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~-~g~tpL~~  109 (223)
T d1uoha_          63 -------------------------------VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQ-NGCTPLHY  109 (223)
T ss_dssp             -------------------------------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHH
T ss_pred             -------------------------------cccccccccccccccccccccchhHHHhccCcee-EeeCC-CCCchhhH
Confidence                                           3334455778888889999999999999999876 44444 78999999


Q ss_pred             HHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhH
Q 015738          285 AAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEF  364 (401)
Q Consensus       285 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  364 (401)
                      |+..|+.+++++|+++|.+ ++.++..|.||||+|+..++.+++++|+.    .+.+++.+|..|.||||+|+..|+.++
T Consensus       110 A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~----~~~~i~~~d~~g~TpL~~Aa~~g~~~~  184 (223)
T d1uoha_         110 AASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLY----YKASTNIQDTEGNTPLHLACDEERVEE  184 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhcc----ccceeeeccCCCCceeccccccCcHHH
Confidence            9999999999999999987 68899999999999999999999999999    889999999999999999999999999


Q ss_pred             HHHHHhhcCCChhhhhccCcceeeeeecccee
Q 015738          365 HDVMNRSTQANYDAVNKQNVSVRHVFNYGYTE  396 (401)
Q Consensus       365 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  396 (401)
                      +++|++. |+|++.+|.+|+||||+|..++.+
T Consensus       185 v~~LL~~-Gad~~~~d~~g~tpl~~A~~~~~~  215 (223)
T d1uoha_         185 AKLLVSQ-GASIYIENKEEKTPLQVAKGGLGL  215 (223)
T ss_dssp             HHHHHHT-TCCSCCCCTTSCCHHHHCCTTHHH
T ss_pred             HHHHHHC-CCCCCCCCCCCCCHHHHHHCCCHH
Confidence            9999966 999999999999999999766554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=246.77  Aligned_cols=265  Identities=22%  Similarity=0.200  Sum_probs=223.0

Q ss_pred             CCCeeEEeecchhhhhchHHHHHHHHhhCChhhhccc-CCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchh
Q 015738           34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVN-AKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEP  112 (401)
Q Consensus        34 g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (401)
                      +.|+||+|  ++.|+.+++++|++    .|++++.++ ..|.||||+|+..|+.+++++|++.+...             
T Consensus         5 ~~~~L~~A--i~~~~~e~vk~Ll~----~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-------------   65 (285)
T d1wdya_           5 DNHLLIKA--VQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-------------   65 (285)
T ss_dssp             HHHHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------
T ss_pred             CcHHHHHH--HHcCCHHHHHHHHH----CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-------------
Confidence            67899999  99999999999988    788887665 46999999999999999999999988774             


Q ss_pred             hHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHH
Q 015738          113 FRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLA  192 (401)
Q Consensus       113 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~  192 (401)
                           ...+..+.+|.++|+..+..+...+.+++.... ...+..+.++++.++..+                ....+..
T Consensus        66 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~----------------~~~~~~~  123 (285)
T d1wdya_          66 -----VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYG----------------KVKALKF  123 (285)
T ss_dssp             -----TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTT----------------CHHHHHH
T ss_pred             -----cccccccchhhHHHhhcCCccccchhhhhcccc-cccccCCCchhHHHHHhc----------------chhhhhh
Confidence                 445667889999999999999999999887663 356778899999998832                5666667


Q ss_pred             HHhcCCCCcc----------CCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcC----CHHH
Q 015738          193 LLENSTSVSH----------EGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYG----NYRT  258 (401)
Q Consensus       193 Ll~~~~~~~~----------~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~----~~~~  258 (401)
                      ++....+++.          ....|.||||+|+..  ++.+.+++|+...+.+++..+..+.+++..+...+    ..++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i  201 (285)
T d1wdya_         124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI  201 (285)
T ss_dssp             HHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH--TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHH
T ss_pred             hhhhcccccccccchhhhhhhcccCchHHHHHHHc--CCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHH
Confidence            7666655443          344689999999999  88999999999888888999999999888765543    3579


Q ss_pred             HHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCcc
Q 015738          259 VNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLA  338 (401)
Q Consensus       259 ~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  338 (401)
                      +++|++.|+++ +..+ ..|.||||.|+..|+.+++++|++.+..+++.+|.+|+||||+|++.++.+++++|++    .
T Consensus       202 ~~~Li~~ga~~-n~~~-~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~----~  275 (285)
T d1wdya_         202 THLLLDHGADV-NVRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK----R  275 (285)
T ss_dssp             HHHHHHTTCCS-SCCC-TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----H
T ss_pred             HHHHHHCCCCC-CccC-CCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH----C
Confidence            99999999987 4444 3799999999999999999999987555589999999999999999999999999999    9


Q ss_pred             ccccccCCC
Q 015738          339 RSLIDEGDA  347 (401)
Q Consensus       339 ~~~~~~~~~  347 (401)
                      |+++|.+|.
T Consensus       276 GAd~n~~d~  284 (285)
T d1wdya_         276 GASTDCGDL  284 (285)
T ss_dssp             SSCSCCSSC
T ss_pred             CCCCCcccC
Confidence            999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-35  Score=240.06  Aligned_cols=224  Identities=20%  Similarity=0.212  Sum_probs=189.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCcc--
Q 015738          125 NTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSH--  202 (401)
Q Consensus       125 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~--  202 (401)
                      .+|||+|+..|+.++++.|++.++.....+|..|.||||+|+.                .++.+++++|++.|++++.  
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~----------------~g~~~iv~~Ll~~ga~~~~~~   64 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS----------------FQAHEITSFLLSKMENVNLDD   64 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHH----------------TTCHHHHHHHHTTCTTCCGGG
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHH----------------cCCccccchhhhhhccccccc
Confidence            4899999999999999999998777777899999999999998                3489999999999999864  


Q ss_pred             -CCCCCCcHHhHHHhhcccccchHHHHHHhhcc-cccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCch
Q 015738          203 -EGPNGKTALHAAAMRSFAVDTALPKLLEKKKN-LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMT  280 (401)
Q Consensus       203 -~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t  280 (401)
                       .+..|.+|++++...  +..+.+..++..... .....+..+.++++.++..++.+++++|+..+... ...+ ..|+|
T Consensus        65 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~g~t  140 (229)
T d1ixva_          65 YPDDSGWTPFHIACSV--GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKD-KFNQI  140 (229)
T ss_dssp             CCCTTSCCHHHHHHHH--TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCC-TTSCC
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccC-CCCCC
Confidence             566788999999887  666777766665432 34456677889999999999999999999988776 3333 37889


Q ss_pred             HHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhC
Q 015738          281 ALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVR  360 (401)
Q Consensus       281 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~  360 (401)
                      |||.|+..|+.+++++|++.+...++.+|..|+||||+|+..++.+++++|+++   .|++++.+|..|+||||+|+.  
T Consensus       141 ~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~---~gad~~~~d~~g~t~l~~A~~--  215 (229)
T d1ixva_         141 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVALN--  215 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH---HCCCSCCCCTTSCCTGGGCSC--
T ss_pred             ccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHh---cCCCCCCcCCCCCCHHHHHhh--
Confidence            999999999999999999988777888999999999999999999999999962   488999999999999999884  


Q ss_pred             ChhHHHHHHhhcCCC
Q 015738          361 PKEFHDVMNRSTQAN  375 (401)
Q Consensus       361 ~~~~~~~Ll~~~~~~  375 (401)
                       .+++++|+++ |+|
T Consensus       216 -~~~~~~Ll~~-g~d  228 (229)
T d1ixva_         216 -EQVKKFFLNN-VVD  228 (229)
T ss_dssp             -HHHHHHHHHH-CCC
T ss_pred             -HHHHHHHHHc-CCC
Confidence             4788888865 876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.1e-36  Score=254.67  Aligned_cols=268  Identities=19%  Similarity=0.193  Sum_probs=202.0

Q ss_pred             chhhhhhhhc-CCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHH----HhhCChhhhcccCCCCcH
Q 015738            2 DLNFFKAASA-GNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEI----LEKCPALLLQVNAKGDTP   76 (401)
Q Consensus         2 ~~~l~~A~~~-g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~g~t~   76 (401)
                      |||||.+++. |+.++++.|.+.+++. ..+..|+||||+|  +..|+.+++++|+..    +...|++++.+|..|+||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~-~~~~~g~T~Lh~A--~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~Tp   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTT-CCCSSCCCHHHHH--HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCc-CCCCCCccHHHHH--HHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCee
Confidence            6899966555 5556666666677764 3334599999999  999999999998764    235689999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCC--CCCCC
Q 015738           77 LHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPG--YPYSA  154 (401)
Q Consensus        77 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~--~~~~~  154 (401)
                      ||+||..|+.++|++|+++|+++                  +..+..|.|||++|+..++.++++++......  .....
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad~------------------n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGADP------------------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCS------------------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             ecccccccccccccccccccccc------------------ccccccccccccchhhhcchhhhhhhhhccccccccccc
Confidence            99999999999999999999985                  56778899999999999999999999876321  12345


Q ss_pred             CCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcc
Q 015738          155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN  234 (401)
Q Consensus       155 ~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~  234 (401)
                      +..+.++.+.+......             .....+..+.+.......                            ....
T Consensus       140 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~----------------------------~~~~  178 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGR-------------DQVASAKLLVEKGAKVDY----------------------------DGAA  178 (277)
T ss_dssp             CTTSCCHHHHHHHSCST-------------THHHHHHHHHHHTCCSSC----------------------------CSGG
T ss_pred             ccccchhHHHHHhcccc-------------cccccccccccccccccc----------------------------cccc
Confidence            66778888887763221             122333333332211110                            0011


Q ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCc
Q 015738          235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCN  314 (401)
Q Consensus       235 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  314 (401)
                      ..+..+..|.||||+++..++.+++++++..........+. .|.||||.|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus       179 ~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~-~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T  256 (277)
T d2fo1e1         179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHT  256 (277)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCC
T ss_pred             cccccccCCCCccccccccccccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCC
Confidence            13345667889999999999999998877655444344444 788999999999999999999999887 6889999999


Q ss_pred             HHHHHHHhCChhHHHHHHh
Q 015738          315 FLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       315 ~l~~A~~~~~~~~~~~Ll~  333 (401)
                      |||+|++.|+.+++++|++
T Consensus       257 ~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         257 ARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            9999999999999998875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.9e-36  Score=249.86  Aligned_cols=256  Identities=19%  Similarity=0.224  Sum_probs=206.3

Q ss_pred             CcHHHHHHH-cCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHH--------H
Q 015738           74 DTPLHLAAK-FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKIL--------T  144 (401)
Q Consensus        74 ~t~L~~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L--------l  144 (401)
                      .||||+|+. .|+.++++.|.+.+.+.                   ..+..|+||||+|+..|+.+++++|        +
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~-------------------~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l   61 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNI-------------------IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI   61 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTT-------------------CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCc-------------------CCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHH
Confidence            489987665 46677777777776653                   1224699999999999999998877        4


Q ss_pred             hcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccch
Q 015738          145 REDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTA  224 (401)
Q Consensus       145 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  224 (401)
                      +.|+++. .+|..|.||||+|+.                .++.+++++|+++|++++..+..|.||+++|...  ++...
T Consensus        62 ~~Gadvn-~~d~~G~TpLh~A~~----------------~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~--~~~~~  122 (277)
T d2fo1e1          62 AAGADVN-AMDCDENTPLMLAVL----------------ARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN--RDFGM  122 (277)
T ss_dssp             HTCCCTT-CCCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT--TCHHH
T ss_pred             HcCCCcc-ccCCCCCeeeccccc----------------cccccccccccccccccccccccccccccchhhh--cchhh
Confidence            5577744 788999999999998                3389999999999999999999999999999988  77777


Q ss_pred             HHHHHHhhc--ccccccccCCCcHHHHHHHcCCHH---HHHHHHhcCcccc------ccccCCCCchHHHHHHhcCCHHH
Q 015738          225 LPKLLEKKK--NLIKETDQYGWTPIHYAAYYGNYR---TVNLLLETDQSAS------NIADKDRKMTALHLAAGKGDART  293 (401)
Q Consensus       225 ~~~ll~~~~--~~~~~~~~~~~t~L~~a~~~~~~~---~~~~Ll~~~~~~~------~~~~~~~g~t~L~~a~~~~~~~~  293 (401)
                      +..+.....  ..++..+..+.++.+.+...+..+   .+..+.+......      .......|.||||.++..++.++
T Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~  202 (277)
T d2fo1e1         123 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI  202 (277)
T ss_dssp             HHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred             hhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccc
Confidence            766665433  235566778889999988877543   4444444322211      11222478899999999999999


Q ss_pred             HHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          294 VERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       294 ~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      +++++.......+.+|..|+||||+|++.|+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|++.
T Consensus       203 ~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~----~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         203 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ----QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH----CcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9998877666678899999999999999999999999999    8999999999999999999999999999999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=7e-36  Score=251.55  Aligned_cols=236  Identities=24%  Similarity=0.235  Sum_probs=176.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP  151 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  151 (401)
                      .+.|+|+.||..|+.++|++|+++|+++                  +..|.+|.||||+|+..|+.+++++|++++.+. 
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv------------------n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-   99 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI------------------NYANVDGLTALHQACIDDNVDMVKFLVENGANI-   99 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC------------------CccCCCCCcHHHHHHhcCCceeeeeeccccccc-
Confidence            3569999999999999999999999984                  678899999999999999999999999999884 


Q ss_pred             CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHh
Q 015738          152 YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEK  231 (401)
Q Consensus       152 ~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~  231 (401)
                      ...+..+.+|+++++.                .++.++++.|++.|+..+..+..+.+++++|+..  +..+.+..++..
T Consensus       100 ~~~~~~~~~~L~~a~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~ll~~  161 (291)
T d1s70b_         100 NQPDNEGWIPLHAAAS----------------CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE--AMEELLQNEVNR  161 (291)
T ss_dssp             TCCCTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH--HHHHHHHHHHHH
T ss_pred             cccccccccccccccc----------------ccccchhhcccccCcccccccccCcccccccccc--ccchhccccccc
Confidence            4667789999999998                3389999999999999999999999999999887  777888888776


Q ss_pred             hcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCC
Q 015738          232 KKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNR  311 (401)
Q Consensus       232 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  311 (401)
                      .+............+..       ......+......  .......|.||||.|+..|+.++++.|++.|++ ++.++..
T Consensus       162 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~  231 (291)
T d1s70b_         162 QGVDIEAARKEEERIML-------RDARQWLNSGHIN--DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYD  231 (291)
T ss_dssp             HTCCHHHHHHHHHHHHH-------HHHHHHHHHTCCC--CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTT
T ss_pred             ccccccccccccccccc-------ccchhhhcccccc--cccccCCCCChhhHHHHcCChhhhcccccceec-ccccccC
Confidence            55433222211111111       1122222222211  122223666777777777777777777777766 5667777


Q ss_pred             CCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHH
Q 015738          312 GCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA  358 (401)
Q Consensus       312 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~  358 (401)
                      |+||||+|+..|+.+++++|++    .|++++.+|..|+||||+|++
T Consensus       232 g~TpL~~A~~~g~~~iv~lLl~----~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         232 GWTPLHAAAHWGKEEACRILVE----NLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHH
Confidence            7777777777777777777777    677777777777777777754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=234.32  Aligned_cols=223  Identities=22%  Similarity=0.276  Sum_probs=190.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC--
Q 015738           74 DTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--  151 (401)
Q Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--  151 (401)
                      +||||+||..|+.++|++|++.+...                 ++.+|.+|.||||+|+..|+.+++++|+++|+++.  
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~-----------------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~   63 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSL-----------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD   63 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGG-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGG
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCc-----------------ccccCCCCCCHHHHHHHcCCccccchhhhhhcccccc
Confidence            58999999999999999999876544                 67889999999999999999999999999988753  


Q ss_pred             CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCc--cCCCCCCcHHhHHHhhcccccchHHHHH
Q 015738          152 YSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVS--HEGPNGKTALHAAAMRSFAVDTALPKLL  229 (401)
Q Consensus       152 ~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~--~~~~~~~t~l~~a~~~~~~~~~~~~~ll  229 (401)
                      ...+..|.+|++++..                .+..++++.++..+...+  ..+..+.++++.++..  ++.+.+..++
T Consensus        64 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~  125 (229)
T d1ixva_          64 DYPDDSGWTPFHIACS----------------VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK--KWFEVSQFLI  125 (229)
T ss_dssp             GCCCTTSCCHHHHHHH----------------HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHH
T ss_pred             cccccccccccccccc----------------cccccccccccccccccccccccccccccccccccc--chhhhhhhhh
Confidence            3467789999999998                237889999998887554  4667789999999988  7778787777


Q ss_pred             HhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhc-CCCCcccc
Q 015738          230 EKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISG-NPKCYELV  308 (401)
Q Consensus       230 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~  308 (401)
                      ..+.. ....+..|.||||+|+..|+.+++++|++.+....+..+. .|+||||+|+..|+.+++++|+++ |++ ++.+
T Consensus       126 ~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~  202 (229)
T d1ixva_         126 ENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLV  202 (229)
T ss_dssp             HTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCC
T ss_pred             hhccc-ccccCCCCCCccchhhhccccccccccccccccccccccc-ccCCchhhhcccccHHHHHHHHHhcCCC-CCCc
Confidence            76554 6778899999999999999999999999998665455554 899999999999999999999975 666 7899


Q ss_pred             CCCCCcHHHHHHHhCChhHHHHHHhcCCccccc
Q 015738          309 DNRGCNFLHYAMVSFHVGQLRNLLENNPLARSL  341 (401)
Q Consensus       309 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  341 (401)
                      |..|+||||+|+.   .+++++|++    .|+|
T Consensus       203 d~~g~t~l~~A~~---~~~~~~Ll~----~g~d  228 (229)
T d1ixva_         203 DNKGAKAEDVALN---EQVKKFFLN----NVVD  228 (229)
T ss_dssp             CTTSCCTGGGCSC---HHHHHHHHH----HCCC
T ss_pred             CCCCCCHHHHHhh---HHHHHHHHH----cCCC
Confidence            9999999999984   579999999    6654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.2e-33  Score=237.78  Aligned_cols=237  Identities=22%  Similarity=0.191  Sum_probs=196.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCc
Q 015738          122 NEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVS  201 (401)
Q Consensus       122 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~  201 (401)
                      ..+.|+|+.||..|+.++|++|+++|+++ +..|..|.||||+|+.                .++.+++++|++.|.+..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~----------------~g~~eiv~~Ll~~~~~~~  100 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI----------------DDNVDMVKFLVENGANIN  100 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH----------------TTCHHHHHHHHHTTCCTT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHh----------------cCCceeeeeecccccccc
Confidence            34669999999999999999999999984 5789999999999998                448999999999999999


Q ss_pred             cCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchH
Q 015738          202 HEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTA  281 (401)
Q Consensus       202 ~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~  281 (401)
                      ..+..+.+|++.++..  ++.+.+..++..+.. .+..+..+.+|+++|+..+..+.++.++............ .+..+
T Consensus       101 ~~~~~~~~~L~~a~~~--~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~  176 (291)
T d1s70b_         101 QPDNEGWIPLHAAASC--GYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK-EEERI  176 (291)
T ss_dssp             CCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH-HHHHH
T ss_pred             cccccccccccccccc--cccchhhcccccCcc-cccccccCccccccccccccchhccccccccccccccccc-ccccc
Confidence            9999999999999998  888999998887644 6778889999999999999999999998654322111111 11111


Q ss_pred             HHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCC
Q 015738          282 LHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRP  361 (401)
Q Consensus       282 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  361 (401)
                      .       .......+...... ....+..|.||||+|+..++.++++.|++    .|++++.++..|.||||+|+..|+
T Consensus       177 ~-------~~~~~~~~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~----~g~din~~~~~g~TpL~~A~~~g~  244 (291)
T d1s70b_         177 M-------LRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIKDYDGWTPLHAAAHWGK  244 (291)
T ss_dssp             H-------HHHHHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             c-------cccchhhhcccccc-cccccCCCCChhhHHHHcCChhhhccccc----ceecccccccCCCCHHHHHHHcCC
Confidence            1       11222223333322 45678899999999999999999999999    899999999999999999999999


Q ss_pred             hhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          362 KEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       362 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      .+++++|++. |+|++.+|..|+||||+|.+
T Consensus       245 ~~iv~lLl~~-Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         245 EEACRILVEN-LCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCTTTSCCS
T ss_pred             HHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH
Confidence            9999999965 99999999999999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-31  Score=214.64  Aligned_cols=222  Identities=24%  Similarity=0.257  Sum_probs=173.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH----hhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcC
Q 015738           72 KGDTPLHLAAKFGHFEIVRVLIE----RAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTRED  147 (401)
Q Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  147 (401)
                      +|+||||+||..|+.++|++|++    .|++                  ++..|..|.||||+|+..|+.+++++|++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~------------------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g   63 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------------------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAG   63 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC------------------CCccCCCCCccceehhccccccccccccccc
Confidence            68999999999999999988886    3444                  4567888999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHH
Q 015738          148 PGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPK  227 (401)
Q Consensus       148 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  227 (401)
                      +... .....+.++++.+...                ...++++.+........                          
T Consensus        64 a~~~-~~~~~~~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~--------------------------  100 (228)
T d1k1aa_          64 ASPM-ALDRHGQTAAHLACEH----------------RSPTCLRALLDSAAPGT--------------------------  100 (228)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHT----------------TCHHHHHHHHHHSCTTS--------------------------
T ss_pred             cccc-cccccccccccccccc----------------ccccchhhhhhcccccc--------------------------
Confidence            8743 5666788888888762                25555555544332111                          


Q ss_pred             HHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccc
Q 015738          228 LLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYEL  307 (401)
Q Consensus       228 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~  307 (401)
                            ...+.......++++.+.........+.|......... .....+.+|++.|+..+...+++.+++.+.. .+.
T Consensus       101 ------~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~  172 (228)
T d1k1aa_         101 ------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA-VDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNA  172 (228)
T ss_dssp             ------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTC
T ss_pred             ------ccccccccccccccccccccccchhhhhhhcccccccc-ccccchhhHHHHHHHhhhhhhhhhhhhhccc-ccc
Confidence                  01122334466788888888888888888877766533 3334788999999999999999999998877 577


Q ss_pred             cCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHH
Q 015738          308 VDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHD  366 (401)
Q Consensus       308 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  366 (401)
                      +|..|.||||+|+..|+.+++++|++    .|+|++.+|.+|.||||+|+++|+.++++
T Consensus       173 ~d~~g~t~L~~A~~~g~~~~v~~Ll~----~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         173 QMYSGSSALHSASGRGLLPLVRTLVR----SGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            89999999999999999999999999    89999999999999999999999888874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-31  Score=212.63  Aligned_cols=212  Identities=23%  Similarity=0.188  Sum_probs=164.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCC
Q 015738          123 EKNTALHEAVSQGNVDVVKILTR----EDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENST  198 (401)
Q Consensus       123 ~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~  198 (401)
                      +|.||||+|+..|+.+++++|++    .|.+ ....|..|.||||+|+.                .++.++++.|++.|+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~----------------~~~~~iv~~Ll~~ga   64 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVI----------------TTLPSVVRLLVTAGA   64 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHH----------------TTCHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhc----------------ccccccccccccccc
Confidence            58899999999999998888875    4444 33566677777777776                336677777777777


Q ss_pred             CCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCcccc--ccccCC
Q 015738          199 SVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSAS--NIADKD  276 (401)
Q Consensus       199 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~--~~~~~~  276 (401)
                      +.+.....+.++++.|...                                    ++.++++.+........  ......
T Consensus        65 ~~~~~~~~~~~~~~~a~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  108 (228)
T d1k1aa_          65 SPMALDRHGQTAAHLACEH------------------------------------RSPTCLRALLDSAAPGTLDLEARNY  108 (228)
T ss_dssp             CTTCCCTTSCCHHHHHHHT------------------------------------TCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred             ccccccccccccccccccc------------------------------------ccccchhhhhhcccccccccccccc
Confidence            6666665555565555544                                    34444433333221111  111223


Q ss_pred             CCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHH
Q 015738          277 RKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVL  356 (401)
Q Consensus       277 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  356 (401)
                      ...++++.+.........+.|..............+.++++.|+..+...+++.+++    .+.+++.+|..|.||||+|
T Consensus       109 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~----~~~~~~~~d~~g~t~L~~A  184 (228)
T d1k1aa_         109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSA  184 (228)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHH
T ss_pred             ccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhh----hccccccccccCcchHHHH
Confidence            567899999999999999999988877667778899999999999999999999999    7889999999999999999


Q ss_pred             HHhCChhHHHHHHhhcCCChhhhhccCcceeeeeec
Q 015738          357 AAVRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFNY  392 (401)
Q Consensus       357 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  392 (401)
                      +..|+.+++++|++. |+|++.+|.+|.||||+|.+
T Consensus       185 ~~~g~~~~v~~Ll~~-Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         185 SGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             HHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSS
T ss_pred             HHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHh
Confidence            999999999999966 99999999999999999954

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.4e-30  Score=207.67  Aligned_cols=207  Identities=22%  Similarity=0.225  Sum_probs=182.3

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHh
Q 015738          137 VDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAM  216 (401)
Q Consensus       137 ~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  216 (401)
                      .|+|++|+++|+++....|.+|.||||+|+.                .++.+++++|++.|++++..+..+.++++.++.
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~----------------~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~   65 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAAR----------------FARADAAKRLLDAGADANSQDNTGRTPLHAAVA   65 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH----------------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHH----------------cCCHHHHHHHHhhcccccccccccccccccccc
Confidence            5899999999999655578899999999999                449999999999999999999999999999998


Q ss_pred             hcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHH
Q 015738          217 RSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVER  296 (401)
Q Consensus       217 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  296 (401)
                      .  .......................+.++.+.+.........+.|.+.+.+. ...+. .|.|||+.++..+..++++.
T Consensus        66 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~-~~~t~l~~~~~~~~~~~~~~  141 (209)
T d1ot8a_          66 A--DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADN-SGKTALHWAAAVNNTEAVNI  141 (209)
T ss_dssp             T--TCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCT-TSCBHHHHHHHTTCHHHHHH
T ss_pred             c--cccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc-cccCC-CCCCcchhhcccCcceeeee
Confidence            7  55555555555555545556667889999999999999999999998876 33333 78899999999999999999


Q ss_pred             hhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHH
Q 015738          297 IISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVM  368 (401)
Q Consensus       297 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  368 (401)
                      +++.+.+ ++.+|..|.||||+|+..|+.+++++|++    .|++++.+|..|.||||+|+++|+.+++++|
T Consensus       142 l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         142 LLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLD----NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ecccccc-ccccccccccccchhccccHHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999887 68899999999999999999999999999    8999999999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.2e-29  Score=202.33  Aligned_cols=204  Identities=25%  Similarity=0.309  Sum_probs=129.9

Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCchhhHHHhHh-ccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 015738           87 EIVRVLIERAKLAQRGDEEPESGVEPFRQMIRM-VNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMA  165 (401)
Q Consensus        87 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  165 (401)
                      |+|++|+++|++.                  +. .|.+|.||||+||..|+.+++++|++.|+.+ ...+..+.++++.+
T Consensus         3 ~~v~~Ll~~g~di------------------n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~   63 (209)
T d1ot8a_           3 QVISDLLAQGAEL------------------NATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAA   63 (209)
T ss_dssp             HHHHHHHHHHHHH------------------HHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             HHHHHHHHCCCCc------------------CcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-cccccccccccccc
Confidence            5666666666663                  33 3566666666666666666666666666653 24555566666666


Q ss_pred             HhcCCchhHHHhhhhhccCCCHHHHHHHHhcC-CCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCC
Q 015738          166 AEYENRSDMLRGLLENRTSASFDMVLALLENS-TSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGW  244 (401)
Q Consensus       166 ~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~  244 (401)
                      +...                ............ .........+.++.+.+...  ........+. ..+.+++..+..|.
T Consensus        64 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~-~~~~~~~~~~~~~~  124 (209)
T d1ot8a_          64 VAAD----------------AMGVFQILLRNRATNLNARMHDGTTPLILAARL--AIEGMVEDLI-TADADINAADNSGK  124 (209)
T ss_dssp             HHTT----------------CHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT--TCTTHHHHHH-HTTCCTTCBCTTSC
T ss_pred             cccc----------------ccccccccccccccccccccccccccccccccc--cchhhhhhhh-hhcccccccCCCCC
Confidence            6522                222222222222 22222333455555555443  3333333333 33444666777788


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCC
Q 015738          245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH  324 (401)
Q Consensus       245 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  324 (401)
                      |||++++..+..++++.+++.+.+. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|+
T Consensus       125 t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         125 TALHWAAAVNNTEAVNILLMHHANR-DAQDD-KDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             CcchhhcccCcceeeeeeccccccc-ccccc-ccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCC
Confidence            8888888888888888888887776 33333 678888888888888888888888877 67788888888888888888


Q ss_pred             hhHHHHH
Q 015738          325 VGQLRNL  331 (401)
Q Consensus       325 ~~~~~~L  331 (401)
                      .+++++|
T Consensus       202 ~~iv~lL  208 (209)
T d1ot8a_         202 HDIVRLL  208 (209)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            8888865

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.8e-31  Score=210.46  Aligned_cols=196  Identities=19%  Similarity=0.172  Sum_probs=163.2

Q ss_pred             CCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccc
Q 015738          157 YGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLI  236 (401)
Q Consensus       157 ~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~  236 (401)
                      +|.||||+|+..++..            ...++++.+...|++++.++..|+||||+|+..  ++.+++.+++..+. ++
T Consensus         1 dG~t~Lh~A~~~g~~~------------~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~--~~~~iv~~L~~~g~-d~   65 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKA------------LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQPEIAEALLGAGC-DP   65 (221)
T ss_dssp             CCCCTTHHHHHTTCSS------------SSSCCCC-----CCCCCCCCTTCCCHHHHHHHT--TCHHHHHCCCSCCC-CS
T ss_pred             CCChHHHHHHHcCCHH------------HHHHHHHHHHhCCCCcccCCCCCCccccccccc--cccccccccccccc-cc
Confidence            4899999999854321            124567778888999999999999999999998  88888887777654 47


Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHhcCccccc----cccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCC
Q 015738          237 KETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASN----IADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRG  312 (401)
Q Consensus       237 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~----~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  312 (401)
                      +..+..|.|||++++..++.++++.|++.+.....    ......|.||||.|+..++.+++++++..+.......+.+|
T Consensus        66 ~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G  145 (221)
T d1iknd_          66 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG  145 (221)
T ss_dssp             CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred             cccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCC
Confidence            88899999999999999999999999987654321    12224678999999999999999999999988655566789


Q ss_pred             CcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          313 CNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       313 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      .||||+|++.|+.+++++|++    .|+|++.+|..|+||||+|+..++.+++++|++.
T Consensus       146 ~T~L~~A~~~g~~~~v~~Ll~----~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         146 RTALHLAVDLQNPDLVSLLLK----CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHT----TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             CCccccccccccHHHHHHHHh----cCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999999999999999    8999999999999999999999999999999865

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=207.78  Aligned_cols=192  Identities=20%  Similarity=0.183  Sum_probs=163.0

Q ss_pred             CCChHHHHHHHcCCHHHHH----HHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCC
Q 015738          123 EKNTALHEAVSQGNVDVVK----ILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENST  198 (401)
Q Consensus       123 ~g~t~L~~A~~~~~~~~~~----~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~  198 (401)
                      +|.||||+|+..|+.++++    ++...+.. .+..|..|+||||+|+.                .++.+++++|++.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~----------------~~~~~iv~~L~~~g~   63 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVI----------------TNQPEIAEALLGAGC   63 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHH----------------TTCHHHHHCCCSCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCcccccccc----------------ccccccccccccccc
Confidence            5899999999999975555    44455666 45788899999999998                348999999999999


Q ss_pred             CCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcc-----cccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccc
Q 015738          199 SVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN-----LIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIA  273 (401)
Q Consensus       199 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~-----~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  273 (401)
                      +++..+..|.+|++.++..  +..+.++.++.....     ........+.||||.|+..++.+++++|+..+.... ..
T Consensus        64 d~~~~d~~g~t~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~-~~  140 (221)
T d1iknd_          64 DPELRDFRGNTPLHLACEQ--GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQ  140 (221)
T ss_dssp             CSCCCCTTCCCHHHHHHHH--TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CC
T ss_pred             ccccccccccccccccccc--ccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccc-cc
Confidence            9999999999999999998  778888888875432     233445568999999999999999999999998874 44


Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcC
Q 015738          274 DKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENN  335 (401)
Q Consensus       274 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  335 (401)
                      ....|.||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++..
T Consensus       141 ~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         141 EPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             cccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            444799999999999999999999999988 7999999999999999999999999999843

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=2.6e-31  Score=227.24  Aligned_cols=243  Identities=12%  Similarity=0.052  Sum_probs=162.5

Q ss_pred             HHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCC
Q 015738           27 RLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEP  106 (401)
Q Consensus        27 ~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  106 (401)
                      ....+..|.|+||+|  +..|+.++++++.. +...|++++.+|..|+||||+||++|+.++|++|+++|++.+      
T Consensus        83 ~~~~~~~~~t~L~~A--a~~g~~~~~~~~~~-L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~------  153 (346)
T d2ajaa1          83 AHKKGIKSEVICFVA--AITGCSSALDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI------  153 (346)
T ss_dssp             HHHHTCCHHHHHHHH--HHHCCHHHHHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH------
T ss_pred             HHhccCCCCcHHHHH--HHhCCHHHHHHHHH-HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc------
Confidence            345566789999999  99999988887533 334789999999999999999999999999999999998742      


Q ss_pred             CCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCCHHHHHHhcCCchhHHHhhhhhccC
Q 015738          107 ESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYP--YSANNYGKTPLYMAAEYENRSDMLRGLLENRTS  184 (401)
Q Consensus       107 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~  184 (401)
                                ....+.+|.||||+|+..|+.+++++|++.|+...  ...+..+.||++.|+.                .
T Consensus       154 ----------~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~----------------~  207 (346)
T d2ajaa1         154 ----------MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG----------------R  207 (346)
T ss_dssp             ----------HHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST----------------T
T ss_pred             ----------ccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh----------------c
Confidence                      12234568999999999999999999999887632  1223446677777776                3


Q ss_pred             CCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHh
Q 015738          185 ASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLE  264 (401)
Q Consensus       185 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~  264 (401)
                      ++.+++++|++.|++++..       .+.+...  +......                    ++.+...+..+....+..
T Consensus       208 g~~~iv~~Ll~~ga~~~~~-------~~~~~~~--~~~~~~~--------------------~~~~~~~~~~~~~~~l~~  258 (346)
T d2ajaa1         208 GHHNVINFLLDCPVMLAYA-------EIHEFEY--GEKYVNP--------------------FIARHVNRLKEMHDAFKL  258 (346)
T ss_dssp             CCHHHHHHHTTSHHHHHHH-------HHCTTTT--TTTTHHH--------------------HHHHHHHHHHHHHTTTTT
T ss_pred             CHHHHHHHHHhCCCCcchH-------HHHHHHc--CcHhhhH--------------------HHHHhhccchHHHHHHHH
Confidence            4889999999988876432       2222221  2222222                    222222222222222221


Q ss_pred             cCcccc-cc------ccCCCCchHHHHHHhcCCHHHHHHhhhcCCCC----ccccCCCCCcHHHHHHHhCChhHHHHHHh
Q 015738          265 TDQSAS-NI------ADKDRKMTALHLAAGKGDARTVERIISGNPKC----YELVDNRGCNFLHYAMVSFHVGQLRNLLE  333 (401)
Q Consensus       265 ~~~~~~-~~------~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  333 (401)
                      ...... ..      .....+.++++.|+..+..+++++|++.+...    ....+.+|+||||+|++.|+.+++++||+
T Consensus       259 a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         259 SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             TSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             hcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhC
Confidence            111100 00      00012347888888888999999998876532    22344578899999999999999999998

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.6e-30  Score=222.34  Aligned_cols=270  Identities=12%  Similarity=0.021  Sum_probs=192.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHH---HHhcCCCCCC
Q 015738           76 PLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKI---LTREDPGYPY  152 (401)
Q Consensus        76 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~---Ll~~~~~~~~  152 (401)
                      +++.+...+..++.+.+...++.......       .....+...+..|.||||+|+.+|+.+++++   |++.|+++ .
T Consensus        49 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n  120 (346)
T d2ajaa1          49 HIFLPGTKNMEQVRQLLCLYYAHYNRNAK-------QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-K  120 (346)
T ss_dssp             HHCCCCSSHHHHHHHHHHHHHHHTTTTCT-------THHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C
T ss_pred             HHHHHhhccHHHHHHHHHHcchhhccchh-------hhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-c
Confidence            33334344456677777777766533221       2344567788899999999999999887765   78888774 4


Q ss_pred             CCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCC--CCCCcHHhHHHhhcccccchHHHHHH
Q 015738          153 SANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEG--PNGKTALHAAAMRSFAVDTALPKLLE  230 (401)
Q Consensus       153 ~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~~~ll~  230 (401)
                      ..+..|.||||+|+.                .++.+++++|++.|++++..+  .+|.||||+|+..  ++.+++++|++
T Consensus       121 ~~~~~g~taL~~Aa~----------------~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~--g~~~iv~~Ll~  182 (346)
T d2ajaa1         121 VIQAENYQAFRLAAE----------------NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN--GHLHVLNRLCE  182 (346)
T ss_dssp             --CHHHHHHHHHHHH----------------TTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHH----------------CCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH--hhHHHHHHHHH
Confidence            678899999999999                449999999999999998765  4589999999999  99999999998


Q ss_pred             hhccc--ccccccCCCcHHHHHHHcCCHHHHHHHHhcCcccccc-----ccCCCCchHHHHHHhcCCHHHHHHhhhcCCC
Q 015738          231 KKKNL--IKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNI-----ADKDRKMTALHLAAGKGDARTVERIISGNPK  303 (401)
Q Consensus       231 ~~~~~--~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  303 (401)
                      .+...  .+..+..+.||++.|+.+|+.+++++|++.|++....     .....+.++++.+...+..+....+......
T Consensus       183 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  262 (346)
T d2ajaa1         183 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD  262 (346)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSS
T ss_pred             cCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhccc
Confidence            76542  3344556778888999999999999999998765321     1112344666666666555555444433222


Q ss_pred             C-ccccC-------CCCCcHHHHHHHhCChhHHHHHHhcCCcc-ccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          304 C-YELVD-------NRGCNFLHYAMVSFHVGQLRNLLENNPLA-RSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       304 ~-~~~~~-------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      . ....+       ..+.++++.|+..+..+++++|++..... ..+.+..+.+|+||||+|++.|+.+++++||..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         263 GVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             SCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             ccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            1 11111       12346888888899999999999843321 223444566899999999999999999999965

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=179.44  Aligned_cols=154  Identities=23%  Similarity=0.226  Sum_probs=109.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 015738           75 TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSA  154 (401)
Q Consensus        75 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  154 (401)
                      +|||+||..|+.++|++|+++|+++                  +..|..|.||||+|+ .++.+++++|+++++++ ...
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~------------------n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~   62 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV------------------NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLK   62 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT------------------TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc------------------CccCCcccccccccc-ccccccccccccccccc-ccc
Confidence            6777777777777777777777763                  456677777777665 57777777777777764 356


Q ss_pred             CCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhcc
Q 015738          155 NNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKKN  234 (401)
Q Consensus       155 ~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~~  234 (401)
                      +..+.++++.++.                .+..+.++.++..+.+++..+..+.+|+++|+..  ++.+.++.++++++.
T Consensus        63 ~~~~~~~l~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~~~~  124 (156)
T d1ihba_          63 DRTGFAVIHDAAR----------------AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE--GHLRVVEFLVKHTAS  124 (156)
T ss_dssp             CTTSCCHHHHHHH----------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHSCC
T ss_pred             cccCccccccccc----------------cccccccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence            6667777777776                2366777777777777777777777777777766  666677777766665


Q ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHhcC
Q 015738          235 LIKETDQYGWTPIHYAAYYGNYRTVNLLLETD  266 (401)
Q Consensus       235 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  266 (401)
                      +.+.++..|.||||+|+..++.+++++|+++|
T Consensus       125 ~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            56666667777777777777777777776654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=174.68  Aligned_cols=152  Identities=22%  Similarity=0.285  Sum_probs=138.3

Q ss_pred             cHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhc
Q 015738          209 TALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGK  288 (401)
Q Consensus       209 t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~  288 (401)
                      ..|+.|+..  ++.+.++.++...+.+++..|..|.||||+|+ .|+.+++++|++.+.++ +.... .|.+|++.++..
T Consensus         4 ~~L~~Aa~~--g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~-~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAAR--GDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDT-SGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHH--TCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHT
T ss_pred             HHHHHHHHc--CCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-ccccc-cccccccccccc
Confidence            469999999  99999999999988889999999999999887 58899999999999887 44443 788999999999


Q ss_pred             CCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHH
Q 015738          289 GDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVM  368 (401)
Q Consensus       289 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  368 (401)
                      ++.++++.+++++.+ ++.+|..|.||||+|++.|+.+++++|+.     |++++.+|.+|+||||+|+..|+.+++++|
T Consensus        79 ~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-----~~~~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          79 GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA-----ESDLHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-----TSCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             ccccccccccccccc-cccccCCCCeeeccccccccccccccccc-----cccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999987 68899999999999999999999998875     688999999999999999999999999999


Q ss_pred             Hhh
Q 015738          369 NRS  371 (401)
Q Consensus       369 l~~  371 (401)
                      +++
T Consensus       153 l~h  155 (156)
T d1bd8a_         153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-27  Score=181.45  Aligned_cols=154  Identities=19%  Similarity=0.174  Sum_probs=142.2

Q ss_pred             hhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHH
Q 015738            3 LNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK   82 (401)
Q Consensus         3 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~   82 (401)
                      ++||.||..|++++|++|+++|++.+..+..|.||||+|  + .++.+++++|++    .+++++..+..|.+||+.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A--~-~~~~ei~~~Ll~----~~a~~~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--K-LGNPEIARRLLL----RGANPDLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--C-SSCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCccccccccc--c-cccccccccccc----cccccccccccCccccccccc
Confidence            689999999999999999999999888999999999988  6 588999999998    789999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 015738           83 FGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPL  162 (401)
Q Consensus        83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  162 (401)
                      .++.+.+++|++.+.+.                  +..+..|.+|+|+|+..++.+++++|+++++.....++..|.|||
T Consensus        76 ~~~~~~~~~l~~~~~~~------------------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL  137 (156)
T d1ihba_          76 AGFLDTLQTLLEFQADV------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  137 (156)
T ss_dssp             HTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             ccccccccccccccccc------------------cccccccccccccccccccccccccccccccccccccCCCCCCHH
Confidence            99999999999998773                  567788999999999999999999999999876778899999999


Q ss_pred             HHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcC
Q 015738          163 YMAAEYENRSDMLRGLLENRTSASFDMVLALLENS  197 (401)
Q Consensus       163 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~  197 (401)
                      |+|+.                .++.+++++|+++|
T Consensus       138 ~~A~~----------------~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         138 DLARL----------------YGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHH----------------TTCHHHHHHHHHTC
T ss_pred             HHHHH----------------cCCHHHHHHHHhcC
Confidence            99998                33899999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.9e-26  Score=193.55  Aligned_cols=198  Identities=15%  Similarity=0.080  Sum_probs=115.3

Q ss_pred             CCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccc---cc
Q 015738          147 DPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAV---DT  223 (401)
Q Consensus       147 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~---~~  223 (401)
                      +.++....|..|+||||+|+.                .++.+++++|++.|++++.++..|.||||.|+..  ++   ..
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~----------------~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~--~~~~~~~  157 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTS----------------IANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS--VNNYDSG  157 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHH----------------TTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS--SHHHHTT
T ss_pred             CCCcCcCcCCCCCCHHHHHHH----------------cCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhc--ccchhhh
Confidence            334333346677777777776                3367777777777777777777777777777764  22   23


Q ss_pred             hHHHHHHhhcccccccccCCCcHHHHHHHcCC----HHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhh
Q 015738          224 ALPKLLEKKKNLIKETDQYGWTPIHYAAYYGN----YRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIIS  299 (401)
Q Consensus       224 ~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  299 (401)
                      .+..++..........+..|+||||+++..+.    ...+++.                           ...++.+++.
T Consensus       158 ~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~l~~  210 (301)
T d1sw6a_         158 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY---------------------------LDILMGWIVK  210 (301)
T ss_dssp             CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH---------------------------HHHHHHHHHH
T ss_pred             hHHHHHHHHhhhhhhcccccCCHHHHHHHHhCccccHHHHHHH---------------------------HHHHHHHHHh
Confidence            34444444444566677888888888775432    1222211                           1223445555


Q ss_pred             cCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhhcCCChhhh
Q 015738          300 GNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRSTQANYDAV  379 (401)
Q Consensus       300 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  379 (401)
                      .+..........+.++++.+........+..+.. ....+..+|.+|.+|+||||+|++.|+.+++++|++. |+|++.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~  288 (301)
T d1sw6a_         211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDL-KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIA  288 (301)
T ss_dssp             GGGCCEEEC----------------CHHHHHCSH-HHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCC
T ss_pred             cCCcchhcccccccchhHHHHhcchHHHHHHHhh-HHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC
Confidence            5544444445555566665555444433333221 0001334788889999999999999999999998865 9999999


Q ss_pred             hccCcceeeeee
Q 015738          380 NKQNVSVRHVFN  391 (401)
Q Consensus       380 ~~~g~t~l~~a~  391 (401)
                      |+.|+|||+||.
T Consensus       289 n~~G~Tpl~~A~  300 (301)
T d1sw6a_         289 NKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCGGGGTC
T ss_pred             CCCCCCHHHHcC
Confidence            999999999883

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.6e-25  Score=166.66  Aligned_cols=150  Identities=23%  Similarity=0.297  Sum_probs=129.8

Q ss_pred             CcHHhHHHhhcccccchHHHHHHhhcccccccccCCCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHh
Q 015738          208 KTALHAAAMRSFAVDTALPKLLEKKKNLIKETDQYGWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAG  287 (401)
Q Consensus       208 ~t~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~  287 (401)
                      .|||+.|++.  ++.+.++.|+..+.. ++ .+..|.||||+|+..++.++++.++....... ... ..+.++++.++.
T Consensus         3 ~t~L~~Aa~~--g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~   76 (153)
T d1awcb_           3 GKKLLEAARA--GQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART-KVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHH--TCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC-TTCCCHHHHHHH
T ss_pred             CHHHHHHHHC--CCHHHHHHHHHcCCC-cc-cccCCCcccccccccccccccccccccccccc-ccc-cccccccccccc
Confidence            4899999988  889999999988754 44 68889999999999999999999988776653 222 256689999999


Q ss_pred             cCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHH
Q 015738          288 KGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDV  367 (401)
Q Consensus       288 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  367 (401)
                      ..+.+++++++..+.+ .+.++..|+||||+|+..|+.+++++|++    .|++++.+|..|.||||+|+..|+.+++++
T Consensus        77 ~~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~----~gad~~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          77 EGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK----YGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccc----cccCCcccCCCCCCHHHHHHHcCCHHHHHh
Confidence            9999999999998887 57789999999999999999999999999    889999999999999999999999999876


Q ss_pred             H
Q 015738          368 M  368 (401)
Q Consensus       368 L  368 (401)
                      |
T Consensus       152 L  152 (153)
T d1awcb_         152 L  152 (153)
T ss_dssp             H
T ss_pred             C
Confidence            5

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2.9e-26  Score=163.18  Aligned_cols=107  Identities=17%  Similarity=0.105  Sum_probs=101.1

Q ss_pred             chHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHH
Q 015738          279 MTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAA  358 (401)
Q Consensus       279 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~  358 (401)
                      .|||++|++.|+.+++++|+++|.+ ++.++..|+||||+|+..++.+++++|++    .|++++.+|..|.||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~----~g~din~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHH----SSCTTTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-ccccccccccccccccccccccccccccc----ccceeeecccccccchhhhhh
Confidence            3899999999999999999999987 78899999999999999999999999999    899999999999999999999


Q ss_pred             hCChhHHHHHHhhcCCChhhhhccCcceeeeee
Q 015738          359 VRPKEFHDVMNRSTQANYDAVNKQNVSVRHVFN  391 (401)
Q Consensus       359 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  391 (401)
                      .|+.+++++|++. |+|++.+|.+|.||+|+|.
T Consensus        78 ~~~~~~v~~Ll~~-Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          78 EGHVSCVKLLLSK-GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTCCHHHHHHHTT-CCCSSSSSSSTCCCCCTCS
T ss_pred             cCchhhhhhhhcc-cccceeeCCCCCCHHHHHh
Confidence            9999999999966 9999999999999999994

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.8e-26  Score=191.06  Aligned_cols=49  Identities=18%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             ccccCCCCCcHHHHHHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHH
Q 015738          305 YELVDNRGCNFLHYAMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLA  357 (401)
Q Consensus       305 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~  357 (401)
                      ++.+|.+|+||||+|++.|+.+++++|++    .|++++.+|..|.|||+||+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~----~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLD----YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHH----TTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHcC
Confidence            56789999999999999999999999999    89999999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.1e-25  Score=165.35  Aligned_cols=150  Identities=22%  Similarity=0.244  Sum_probs=110.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 015738           74 DTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS  153 (401)
Q Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  153 (401)
                      .||||.||+.|+.++|++||++|++.                   ..+..|.||||+|+..++.++++.++....... .
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-------------------~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~   62 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-------------------TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-A   62 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-------------------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-C
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-------------------ccccCCCcccccccccccccccccccccccccc-c
Confidence            48899999999999999999988864                   246778999999999999999988888776643 5


Q ss_pred             CCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhc
Q 015738          154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK  233 (401)
Q Consensus       154 ~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~  233 (401)
                      .+..+.++++.++.                ....+++++++..+++++..+..|.||||+|+..  ++.++++.+++.+ 
T Consensus        63 ~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~--g~~~iv~~ll~~g-  123 (153)
T d1awcb_          63 RTKVDRTPLHMAAS----------------EGHANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVELLIKYG-  123 (153)
T ss_dssp             CCTTCCCHHHHHHH----------------HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTT-
T ss_pred             cccccccccccccc----------------cccceeeecccccCCccccccccCchHHHhhhhc--chhheeeeccccc-
Confidence            55667778877776                2277788888888877777777777777777766  6666666555543 


Q ss_pred             ccccccccCCCcHHHHHHHcCCHHHHHHH
Q 015738          234 NLIKETDQYGWTPIHYAAYYGNYRTVNLL  262 (401)
Q Consensus       234 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~L  262 (401)
                      .+++..|..|.||||+|+.+|+.+++++|
T Consensus       124 ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            33566666666666666666666666654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.8e-25  Score=165.31  Aligned_cols=151  Identities=23%  Similarity=0.263  Sum_probs=104.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhh-hhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 015738           75 TPLHLAAKFGHFEIVRVLIERA-KLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYS  153 (401)
Q Consensus        75 t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  153 (401)
                      +.|+.||..|+.++|++|++.+ ++                  ++..|..|.||||+|+ .++.+++++|++++.++ ..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~------------------~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~   63 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH------------------PDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NV   63 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC------------------TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC------------------CCccCCCCCccccccc-ccccccccccccccccc-cc
Confidence            3477888888888888877753 33                  3556777788888775 36777788888777764 35


Q ss_pred             CCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHhcCCCCccCCCCCCcHHhHHHhhcccccchHHHHHHhhc
Q 015738          154 ANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLENSTSVSHEGPNGKTALHAAAMRSFAVDTALPKLLEKKK  233 (401)
Q Consensus       154 ~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ll~~~~  233 (401)
                      .+..|.+|++.++.                .+..++++.+++.|++++..+..|.||||+|+..  ++.+.+++|+ . +
T Consensus        64 ~~~~~~~~l~~~~~----------------~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~--~~~~i~~~L~-~-~  123 (156)
T d1bd8a_          64 QDTSGTSPVHDAAR----------------TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE--GHTAVVSFLA-A-E  123 (156)
T ss_dssp             CCTTSCCHHHHHHH----------------TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH--TCHHHHHHHH-T-T
T ss_pred             cccccccccccccc----------------cccccccccccccccccccccCCCCeeecccccc--cccccccccc-c-c
Confidence            56667777777776                3367777777777777777777777777777766  6666665444 2 2


Q ss_pred             ccccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q 015738          234 NLIKETDQYGWTPIHYAAYYGNYRTVNLLLET  265 (401)
Q Consensus       234 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  265 (401)
                      .+++.++..|.||||+|+..|+.+++++|+++
T Consensus       124 ~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         124 SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            34566667777777777777777777777654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.6e-25  Score=157.34  Aligned_cols=119  Identities=19%  Similarity=0.185  Sum_probs=107.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCC-cHHHHHHH
Q 015738          243 GWTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGC-NFLHYAMV  321 (401)
Q Consensus       243 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A~~  321 (401)
                      +.++||+|+..|+.+++++|++.|+++ +..+. .|.||+|.|+ .|+.+++++|+++|++ ++.++..+. ||||+|++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~-~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNS-YGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccc-cccccccccc-cccccccccccccccc-cccccccccccccccccc
Confidence            468999999999999999999999887 44444 7899999775 6999999999999988 677887766 69999999


Q ss_pred             hCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHH
Q 015738          322 SFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMN  369 (401)
Q Consensus       322 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  369 (401)
                      .|+.+++++|++    .|++++.+|..|+||||+|++.|+.+++++|+
T Consensus        79 ~g~~~~v~~Ll~----~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          79 EGFLDTLVVLHR----AGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HTCHHHHHHHHH----HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccc----cccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999    89999999999999999999999999999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-26  Score=165.02  Aligned_cols=119  Identities=14%  Similarity=0.052  Sum_probs=109.2

Q ss_pred             chhhhhhhhcCCCCchhhhhhHHHHHHHHhhcCCCeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCC-cHHHHH
Q 015738            2 DLNFFKAASAGNSEPFKDMERDVIERLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD-TPLHLA   80 (401)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-t~L~~A   80 (401)
                      .++||.||..|++++|++|+++|++++..+..|.||||+|  + .|+.+++++|++    .|++++..+..+. ||||+|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a--~-~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLL----HGAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc--c-cccccccccccc----cccccccccccccccccccc
Confidence            3689999999999999999999998888888899999977  5 589999999988    7899999988876 699999


Q ss_pred             HHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHh
Q 015738           81 AKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTR  145 (401)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  145 (401)
                      |+.|+.++|++|+++|+++                  +.+|..|.||||+|+..|+.+++++|++
T Consensus        77 ~~~g~~~~v~~Ll~~ga~~------------------~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGARL------------------DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccc------------------ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999984                  6778899999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.3e-25  Score=159.86  Aligned_cols=107  Identities=19%  Similarity=0.140  Sum_probs=99.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhC
Q 015738          244 WTPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSF  323 (401)
Q Consensus       244 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~  323 (401)
                      .|||++|++.|+.+++++|++.|+++ +..+. .|.||||+|+..|+.+++++|++.|.+ ++.+|..|+||||+|+..+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~-~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE-GGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSS-SSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccc-cccccccccccccccccccccccccce-eeecccccccchhhhhhcC
Confidence            37999999999999999999999887 44444 899999999999999999999999988 6889999999999999999


Q ss_pred             ChhHHHHHHhcCCccccccccCCCCCCcHHHHHH
Q 015738          324 HVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLA  357 (401)
Q Consensus       324 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~  357 (401)
                      +.+++++|++    .|++++.+|..|.||||+|.
T Consensus        80 ~~~~v~~Ll~----~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLS----KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHT----TCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhhc----ccccceeeCCCCCCHHHHHh
Confidence            9999999999    89999999999999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-24  Score=156.23  Aligned_cols=124  Identities=23%  Similarity=0.094  Sum_probs=101.1

Q ss_pred             CeeEEeecchhhhhchHHHHHHHHhhCChhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHH
Q 015738           36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQ  115 (401)
Q Consensus        36 t~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  115 (401)
                      ++|+.|  +..|+.+++++|++    .|++++.+|.+|+||||+||..|+.+++++|+++|++.                
T Consensus         3 ~lL~~A--~~~G~~~~v~~Ll~----~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~----------------   60 (130)
T d1ycsb1           3 ALLLDS--SLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----------------   60 (130)
T ss_dssp             HHHHHH--HHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT----------------
T ss_pred             HHHHHH--HHcCCHHHHHHHHH----cCCCcccccccccccccccccccccccccccccccccc----------------
Confidence            467788  88999999988887    68888999999999999999999999999999988873                


Q ss_pred             HhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCCchhHHHhhhhhccCCCHHHHHHHHh
Q 015738          116 MIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPYSANNYGKTPLYMAAEYENRSDMLRGLLENRTSASFDMVLALLE  195 (401)
Q Consensus       116 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~  195 (401)
                        +..|.+|.||||+|+.+|+.+++++|+++|+++.......+.||+.++..              ...+..+++++|++
T Consensus        61 --~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a--------------~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          61 --NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE--------------MEEGYTQCSQFLYG  124 (130)
T ss_dssp             --TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCS--------------SSTTCCCHHHHHHH
T ss_pred             --ccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHH--------------HHcChHHHHHHHHh
Confidence              56788899999999999999999999999888664545568888877764              22446778888876


Q ss_pred             cC
Q 015738          196 NS  197 (401)
Q Consensus       196 ~~  197 (401)
                      .+
T Consensus       125 ~~  126 (130)
T d1ycsb1         125 VQ  126 (130)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-23  Score=150.07  Aligned_cols=119  Identities=15%  Similarity=0.143  Sum_probs=103.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCHHHHHHhhhcCCCCccccCCCCCcHHHHHHHhCC
Q 015738          245 TPIHYAAYYGNYRTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARTVERIISGNPKCYELVDNRGCNFLHYAMVSFH  324 (401)
Q Consensus       245 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  324 (401)
                      ++|+.|+..|+.+++++|++.|+++ +..+. .|+||||+|+..++.+++++|++.+.+ ++.+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPND-EGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccc-ccccccccccccccccccccccccccc-cccccccCcccccccchhhH
Confidence            5789999999999999999999887 45554 789999999999999999999999887 68899999999999999999


Q ss_pred             hhHHHHHHhcCCccccccccCCC-CCCcHHHHH--HHhCChhHHHHHHh
Q 015738          325 VGQLRNLLENNPLARSLIDEGDA-EGNTPLHVL--AAVRPKEFHDVMNR  370 (401)
Q Consensus       325 ~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A--~~~~~~~~~~~Ll~  370 (401)
                      .+++++|++    .|++++.++. .|+||++++  ++.|+.+++++|+.
T Consensus        80 ~~~v~~Ll~----~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          80 VQVCKFLVE----SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHH----TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHH----cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            999999999    8899998774 588887766  56788999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.6e-24  Score=158.36  Aligned_cols=125  Identities=18%  Similarity=0.172  Sum_probs=108.6

Q ss_pred             hhhhhhhcCCCCchhhhhhHHHHHHHH------hhcCCCeeEEeecch---hhhhchHHHHHHHHhhCChhhhcccCCCC
Q 015738            4 NFFKAASAGNSEPFKDMERDVIERLLT------AKAKNTILHINIISS---ERENVSTKFVEEILEKCPALLLQVNAKGD   74 (401)
Q Consensus         4 ~l~~A~~~g~~~~~~~ll~~~~~~~~~------~~~g~t~L~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   74 (401)
                      .|+.|++.+++..+..++.+|.+....      +..|+||||+|  +.   .++.+++++|++    .|++++.+|..|+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~iv~~Ll~----~gadin~~d~~g~   82 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHH--HHHCCTTTHHHHHHHHH----HCSCTTCCCTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHH--HHhcCCCCHHHHHHHHH----cCCChhhhhhhhc
Confidence            478999999999999998887654432      45589999999  75   467889999988    5899999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhhccCCCCCCCCchhhHHHhHhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 015738           75 TPLHLAAKFGHFEIVRVLIERAKLAQRGDEEPESGVEPFRQMIRMVNNEKNTALHEAVSQGNVDVVKILTREDPGYPY  152 (401)
Q Consensus        75 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  152 (401)
                      ||||+||..|+.+++++|+++|++                  ++.+|..|.||||+|+..|+.+++++|++.+.....
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~gad------------------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKAS------------------IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             cccccccccccccccccccccCcc------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            999999999999999999999998                  467888999999999999999999999998765443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1e-21  Score=145.58  Aligned_cols=121  Identities=17%  Similarity=0.270  Sum_probs=106.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCcccccc----ccCCCCchHHHHHHhc---CCHHHHHHhhhcCCCCccccCCCCCcHHHH
Q 015738          246 PIHYAAYYGNYRTVNLLLETDQSASNI----ADKDRKMTALHLAAGK---GDARTVERIISGNPKCYELVDNRGCNFLHY  318 (401)
Q Consensus       246 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~----~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  318 (401)
                      .|..|++.+++..+..++..|.+....    .....|+||||+|++.   +..+++++|++.|++ ++.+|..|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhcccccc
Confidence            456788999999999888887765321    1234689999999974   678999999999988 78999999999999


Q ss_pred             HHHhCChhHHHHHHhcCCccccccccCCCCCCcHHHHHHHhCChhHHHHHHhh
Q 015738          319 AMVSFHVGQLRNLLENNPLARSLIDEGDAEGNTPLHVLAAVRPKEFHDVMNRS  371 (401)
Q Consensus       319 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  371 (401)
                      |+..|+.+++++|++    .|++++.+|..|+||||+|++.|+.+++++|++.
T Consensus        88 A~~~~~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          88 CCLTDNAECLKLLLR----GKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccc----cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999    8999999999999999999999999999999875