Citrus Sinensis ID: 015739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MMKDHAAAGVAERLGSGPGEIMKRSPSELAFEEFFSSEIEPTPTPTPTPNPNPNPTVDDHNINNNINNNIANIHQHQHLHHHFFQDGHDQHLSFAFKNHRDDEDMAMKGIISSNTGTGGVSVTTGNLHKRWSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSSLGVGLANPDIHNSNNTAVNDALSCVSSDIWP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHccccHHHHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccEHcccccccc
Coil and Loop (DISEMBL)
MMKDHAAAGVAerlgsgpgeimkrspselafeeffsseieptptptptpnpnpnptvddhninnninnNIANIHQHQHlhhhffqdghdQHLSFAFknhrddedmamkgiissntgtggvsvttgnlhkrwsqsqnpnsskrstivttttidsqssicgsvtgnwsaatptsgdktntidckarlassgssadhsddedleieagpceqstdhpidlKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKeantnnrvLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLlqshlspvlqpinSIITShnnnnnnnnigrhqlanvsptltvpgngasfsaisstsghrsslgvglanpdihnsnntavndalscvssdiwp
Flexible Loop (DISEMBL)
mmkdhaaagvaerlgsgpgeiMKRSPSELAFEEFFSSEIEPTPTPTPTPNPNPNPTVDDHNINNNINNNIANIHQHQHLHHHFFQDGHDQHLSFAFKNHRDDEDMAMKGIissntgtggVSVTTGNLHkrwsqsqnpnsskrstIVTTttidsqssicgsvtgnwsaatptsgdktnTIDCKARLASsgssadhsddedleieagpceqstdhpidlkrirrmvsnresarrsrkrkqahMQELELQVERLKGENATLYKQFTDAAQQYkeantnnrvlksDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSSLGVGLANPDIHNSNNTAVNDALSCVSSDIWP
Low Complexity Region (SEG)
MMKDHAAAGVAERLGSGPGEIMKRspselafeeffsseieptptptptpnpnpnptVddhninnninnnianihqhqhlhhhffqdghdqhLSFAFKNHRDDEDMAMKgiissntgtggvsvttgnLHKRWSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLAssgssadhsddedLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHnnnnnnnnIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSSLGVGLANPDIHNSNNTAVNDALSCVSSDIWP
Disordered region (IsUnstruct)
***************************************************************NNINNNIANIHQHQHLHHHFFQDGHDQHLSFAFK***********************************************************ICGSVT**********************************************************************************************TLYKQFTD************RVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPIN*******************************************************************************
Disordered Region (DISOPRED)
*******************************************************************************************************************************************************************************************************************************************RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVL*******************************************************************************************************************V**DIWP
Disordered Region (DISEMBL)
*********VAERLGSGPGEIMKRSPSELAFEEFFSSE***********NPNPNPTVDDHNINNNINNNIANIHQHQHLHHHFFQDGHDQHLSFAFKNHRDDEDMAMKGIISSNTGTGGVSVTTGNLHK************************QSSICGSVTGNWSAATPTSGDKTNTIDCKAR***************LEIEAGPCEQSTDHPIDLKRIRRMV*****************QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFS************GVGLANPDIHNSNNTAVNDALSCVSSDIWP
Disordered Region (DISPRO)
****************************LAFEEFFSSEIEPTPTP*********************************************H***********E*MA*KGIISSN*************************************************************************************************************************RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINS**************GRHQLANVSPTLTVPGNGASFSAISS*********VGLANPDIHNSNNTAVNDALSCVSSDIWP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMKDHAAAGVAERLGSGPGEIMKRSPSELAFEEFFSSEIEPTPTPTPTPNPNPNPTVDDHNINNNINNNIANIHQHQHLHHHFFQDGHDQHLSFAFKNHRDDEDMAMKGIISSNTGTGGVSVTTGNLHKRWSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFTDAAQQxxxxxxxxxxxxxxxxxxxxxVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSSLGVGLANPDIHNSNNTAVNDALSCVSSDIWP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
Q9FUD3	277	Basic leucine zipper 9 OS	yes	no	0.538	0.779	0.5	1e-50
Q99090	401	Light-inducible protein C	N/A	no	0.251	0.251	0.557	2e-18
P12959	453	Regulatory protein opaque	N/A	no	0.236	0.209	0.48	3e-18
B9DGI8	314	Basic leucine zipper 63 O	no	no	0.211	0.270	0.564	4e-15
O22763	411	Basic leucine zipper 10 O	no	no	0.331	0.323	0.449	3e-13
P24068	151	Ocs element-binding facto	N/A	no	0.256	0.682	0.358	3e-09
P23922	349	Transcription factor HBP-	N/A	no	0.169	0.194	0.441	4e-08
Q99089	411	Common plant regulatory f	N/A	no	0.600	0.586	0.253	1e-07
Q9MA75	341	Transcription factor VIP1	no	no	0.311	0.366	0.292	7e-07
Q84JK2	285	Protein FD OS=Arabidopsis	no	no	0.109	0.154	0.590	7e-07

>sp|Q9FUD3|BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/250 (50%), Positives = 157/250 (62%), Gaps = 34/250 (13%)

Query: 152 DSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQST 211
           D+QSSIC     N SA +P S +K   +    R  +SGSS  +SDDED E EAG  E + 
Sbjct: 62  DAQSSICE----NLSADSPVSANKPE-VRGGVRRTTSGSSHVNSDDEDAETEAGQSEMTN 116

Query: 212 DHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKE 271
           D P DLKRIRRM SNRESA+RSR+RKQ ++ +LE QV+ LKG+N+TLYKQ  DA QQ++ 
Sbjct: 117 D-PNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRS 175

Query: 272 ANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHNNN 331
           A TNNRVLKSDVE LR KV+LAED+V+ GSLT  LNQLLQ+HLSP    I+S+       
Sbjct: 176 AGTNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQTHLSPPSHSISSL------- 228

Query: 332 NNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSSLGVGLANPDIHNSNNTAVNDA 391
                   H   N SP +TV  + + F  + + SG  SS G+G              ++A
Sbjct: 229 --------HYTGNTSPAITVHSDQSLFPGM-TLSGQNSSPGLG-----------NVSSEA 268

Query: 392 LSCVSSDIWP 401
           +SCV SDIWP
Sbjct: 269 VSCV-SDIWP 277

Transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q99090|CPRF2_PETCR Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEAN 273
           P D KR+RRM+SNRESARRSR+RKQAHM ELE QV +L+ EN++L K+ TD +Q+Y +A 
Sbjct: 196 PSDAKRVRRMLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAA 255

Query: 274 TNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPV 317
            +NRVLK+D+E +RAKV++AE+ V       GLN + QS  S +
Sbjct: 256 VDNRVLKADIETMRAKVKMAEETV---KRVTGLNPMFQSMSSEI 296

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 69/100 (69%), Gaps = 5/100 (5%)

Query: 196 DDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGEN 255
           +D D E+E    +  T+     +R+R+  SNRESARRSR RK AH++ELE QV +LK EN
Sbjct: 210 EDMDGEVEILGFKMPTE-----ERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAEN 264

Query: 256 ATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 295
           + L ++     Q+Y +AN +NRVL++D+E LRAKV++ ED
Sbjct: 265 SCLLRRIAALNQKYNDANVDNRVLRADMETLRAKVKMGED 304

Involved in the regulation of the endosperm-specific production of albumin b-32 and other zein proteins. It is a trans-acting transcriptional activator that binds to the consensus sequence 5'-GATGAYRTGR-3'.

Zea mays (taxid: 4577)

>sp|B9DGI8|BZP63_ARATH Basic leucine zipper 63 OS=Arabidopsis thaliana GN=BZIP63 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 68/85 (80%)

Query: 213 HPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA 272
           +P ++KR++RM+SNRESARRSR+RKQAH+ ELE QV +L+ EN+ L K  TD  Q + +A
Sbjct: 148 NPTNVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDA 207

Query: 273 NTNNRVLKSDVEALRAKVRLAEDVV 297
           +  NRVLK+++E LRAKV++AE+ V
Sbjct: 208 SVENRVLKANIETLRAKVKMAEETV 232

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|O22763|BZP10_ARATH Basic leucine zipper 10 OS=Arabidopsis thaliana GN=BZIP10 PE=1 SV=2

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 92/149 (61%), Gaps = 16/149 (10%)

Query: 184 RLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQE 243
           +  +SGSS ++SDDEDL+ E       +  P D+K+ RRM+SNRESARRSR+RKQ    +
Sbjct: 185 KQVTSGSSREYSDDEDLDEEN--ETTGSLKPEDVKKSRRMLSNRESARRSRRRKQEQTSD 242

Query: 244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLT 303
           LE QV  LKGE+++L KQ ++   +Y EA   NR+LK+D+E LRAKV++AE+ V      
Sbjct: 243 LETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIETLRAKVKMAEETV---KRV 299

Query: 304 CGLNQLLQSHLSPVLQPINSIITSHNNNN 332
            G+N +L    S            HNNNN
Sbjct: 300 TGMNPMLLGRSS-----------GHNNNN 317

Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death.

Arabidopsis thaliana (taxid: 3702)

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNR 277
           +R +R +SNRESARRSR RKQ H+ EL  +V RL+ +NA +  +  D A QY      N 
Sbjct: 26  RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENT 85

Query: 278 VLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHL---SPVLQP 320
           VL++    L  ++R   +V+ +     G+   +Q  +    P+L+P
Sbjct: 86  VLRARAAELGDRLRSVNEVLRLVEEFSGVAMDIQEEMPADDPLLRP 131

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Zea mays (taxid: 4577)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%)

Query: 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN 275
           +LK+ +R +SNRESARRSR RKQA  +EL  + E LK EN++L  +     ++Y+E  + 
Sbjct: 252 ELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSK 311

Query: 276 NRVLKSDV 283
           N  LK+ +
Sbjct: 312 NTSLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q99089|CPRF1_PETCR Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 116/300 (38%), Gaps = 59/300 (19%)

Query: 29  LAFEEFFSSEIEPTPTPTPTPNPNPNPTVDDHNINNNINNNIANIHQH---------QHL 79
           +A   +F+  +    +P P     P P +  + +          ++ H           +
Sbjct: 46  VALPPYFNPAVASGQSPHPYMWGPPQPVMPPYGVPYAALYAHGGVYAHPGVPLAASPMSM 105

Query: 80  HHHFFQDGHDQH-LSFAFKNHRDDEDMAMKGIISSNTGTGGVSVTTGNLHKRWSQSQNPN 138
             H    G ++H L    K H   +D+AM      + G G    + G + +  SQS+   
Sbjct: 106 DTHAKSSGTNEHGLIKKLKGH---DDLAM------SIGNGKADSSEGEMERTLSQSKETE 156

Query: 139 SS--------KRSTI-------------VTTTTIDSQSSICGSVTGN------WSAATPT 171
            S        KR+ +             +    I++QSS+  S           + ATP 
Sbjct: 157 GSSDGSNENSKRAAVNGRKRGRDEAPNMIGEVKIETQSSVIPSPRAKSEKLLGITVATPM 216

Query: 172 SGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQSTDHP--------IDLKRIRRM 223
              K         + SS    D   +  +   AG  + ST  P         DLKR RR 
Sbjct: 217 VAGKVVGTVVSPSMTSSLELKDSPKEHAVNSPAGGQQPSTMMPNDSWLHNDRDLKRERRK 276

Query: 224 VSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ---FTDAAQQYKEANTNNRVLK 280
            SNRESARRSR RKQA  +EL ++V+ L  EN  L  +    T  A+  K  N N+R+L+
Sbjct: 277 QSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAE--KLTNDNSRLLE 334

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 15/140 (10%)

Query: 215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANT 274
           +D KR +R+++NR+SA RS++RK  +  ELE +V+ L+ E  TL  Q T   +   E NT
Sbjct: 193 LDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNT 252

Query: 275 NNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHNNNNNN 334
            N+ LK  ++AL  +  L +           LN+ L+  L+ +      ++       N 
Sbjct: 253 ENKHLKMRLQALEQQAELRD----------ALNEALRDELNRL-----KVVAGEIPQGNG 297

Query: 335 NNIGRHQLANVSPTLTVPGN 354
           N+  R Q ++    +   GN
Sbjct: 298 NSYNRAQFSSQQSAMNQFGN 317

Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JK2|FD_ARATH Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 33/44 (75%)

Query: 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261
           +R +RM+ NRESA RSR RKQA+  ELEL+V  L+ ENA L +Q
Sbjct: 216 RRHKRMIKNRESAARSRARKQAYTNELELEVAHLQAENARLKRQ 259

Transcription factor required for the transition to flowering promoted by FT.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
296081787	419	unnamed protein product [Vitis vinifera]	0.790	0.756	0.455	2e-67
225429828	256	PREDICTED: uncharacterized protein LOC10	0.598	0.937	0.542	4e-64
224121420	214	predicted protein [Populus trichocarpa]	0.528	0.990	0.535	6e-52
18420842	277	basic leucine zipper 9 [Arabidopsis thal	0.538	0.779	0.5	6e-49
297808487	276	hypothetical protein ARALYDRAFT_910526 [	0.568	0.826	0.472	4e-48
13365772	278	RISBZ4 [Oryza sativa] gi|125538288|gb|EA	0.488	0.705	0.516	2e-47
115444547	317	Os02g0175100 [Oryza sativa Japonica Grou	0.488	0.618	0.516	2e-47
49388982	277	RISBZ4 [Oryza sativa Japonica Group] gi|	0.486	0.703	0.516	3e-47
444300786	323	bZIP transcription factor family protein	0.598	0.743	0.520	6e-47
357436639	339	Transcription factor bZIP [Medicago trun	0.583	0.690	0.526	1e-46

>gi|296081787|emb|CBI20792.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 179/393 (45%), Positives = 234/393 (59%), Gaps = 76/393 (19%)

Query: 22  MKRSPSELAFEEFFSSEIEPTPTP--TPTPNPN---------PNPTVDDHNINNNINNNI 70
           MKRS SEL F+EF    I P       PT  P          P P V            +
Sbjct: 90  MKRSNSELDFQEFVRLPISPVAVDNGAPTSKPEIRSPKARTFPEPVV------------L 137

Query: 71  ANIHQHQHLHHHFFQDGHDQHLSFAFKNHRDDEDMAMKGIISSNTGTGGVSVTTGNLHKR 130
             + + +      F+D      SFA K + D    AM G     +G GG++         
Sbjct: 138 FGVDEDKT-----FEDVCAGDFSFALK-YGD----AMTGF----SGCGGLT------DLP 177

Query: 131 WSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGS 190
           W Q+  P +S       T TIDSQSSIC          TPTS +K    + +AR A+SGS
Sbjct: 178 WYQNPTPRNSS-----VTATIDSQSSIC--------VGTPTSCNKALGTENQARGATSGS 224

Query: 191 SADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVER 250
           S + SDDED++ E+GPCE+STD P +LKR+RRMVSNRESARRSRKRKQAH+ +LELQVE+
Sbjct: 225 SRELSDDEDIDTESGPCEESTD-PNNLKRMRRMVSNRESARRSRKRKQAHLADLELQVEQ 283

Query: 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLL 310
           L+GENA+LYKQ TDA+QQ+ +ANTNNRVLKSDVEALRAKV L E +V+ GS+T  LN +L
Sbjct: 284 LRGENASLYKQLTDASQQFGDANTNNRVLKSDVEALRAKVELVEGMVARGSVTSSLNHIL 343

Query: 311 QSHLSPVLQPINSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSS 370
           Q+HLS    P   ++++HN           ++ANVSPT+TV G+ AS+S + + SGH S+
Sbjct: 344 QTHLS---SP--QLLSTHN---------LCRVANVSPTITVRGDDASYSGM-TISGHNSA 388

Query: 371 LGVGLANPDIHNS--NNTAVNDALSCVSSDIWP 401
             +GL N +I NS   N  ++D +SC +S+IWP
Sbjct: 389 -ALGLENAEIRNSEIKNRVMSDGVSC-ASEIWP 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429828|ref|XP_002283059.1| PREDICTED: uncharacterized protein LOC100264680 [Vitis vinifera]

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 148/273 (54%), Positives = 193/273 (70%), Gaps = 33/273 (12%)

Query: 131 WSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGS 190
           W Q+  P +S       T TIDSQSSIC          TPTS +K    + +AR A+SGS
Sbjct: 15  WYQNPTPRNSS-----VTATIDSQSSIC--------VGTPTSCNKALGTENQARGATSGS 61

Query: 191 SADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVER 250
           S + SDDED++ E+GPCE+STD P +LKR+RRMVSNRESARRSRKRKQAH+ +LELQVE+
Sbjct: 62  SRELSDDEDIDTESGPCEESTD-PNNLKRMRRMVSNRESARRSRKRKQAHLADLELQVEQ 120

Query: 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLL 310
           L+GENA+LYKQ TDA+QQ+ +ANTNNRVLKSDVEALRAKV L E +V+ GS+T  LN +L
Sbjct: 121 LRGENASLYKQLTDASQQFGDANTNNRVLKSDVEALRAKVELVEGMVARGSVTSSLNHIL 180

Query: 311 QSHLSPVLQPINSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSS 370
           Q+HLS    P   ++++HN           ++ANVSPT+TV G+ AS+S + + SGH S+
Sbjct: 181 QTHLS---SP--QLLSTHN---------LCRVANVSPTITVRGDDASYSGM-TISGHNSA 225

Query: 371 LGVGLANPDIHNS--NNTAVNDALSCVSSDIWP 401
             +GL N +I NS   N  ++D +SC +S+IWP
Sbjct: 226 -ALGLENAEIRNSEIKNRVMSDGVSC-ASEIWP 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121420|ref|XP_002330823.1| predicted protein [Populus trichocarpa] gi|222872625|gb|EEF09756.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 161/239 (67%), Gaps = 27/239 (11%)

Query: 164 NWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRM 223
           NWS  +P S +K    D + R+A+S SS D SD      E G  EQST+ P D+KRIRRM
Sbjct: 1   NWSVGSPMSANKPRVKDSQTRVAASVSSPDQSD------EDGLSEQSTN-PHDIKRIRRM 53

Query: 224 VSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283
           VSNRESARRSRKRKQAH+ +LE+QV+ + GENA+L+KQ +DA QQ++ A TN RVL SDV
Sbjct: 54  VSNRESARRSRKRKQAHLSDLEVQVDHMTGENASLFKQLSDATQQFRTAETNRRVLNSDV 113

Query: 284 EALRAKVRLAEDVVSVGSLTC-GLNQLLQSHL-SPVLQPINSIITSHNNNNNNNNIGRHQ 341
           EALRAKV+LAED+V+ GSLTC  LNQ LQSHL SP L              NN+N+  H 
Sbjct: 114 EALRAKVKLAEDMVARGSLTCNNLNQFLQSHLTSPQLL-------------NNHNL--HL 158

Query: 342 LANVSPTLTVPGNGASFSAISSTSGHRSSLGVGLANPDIHNSNNTAVNDALSCVSSDIW 400
           + NVSPT+T+ G+ A   A  S SG  S LG+G A+    N NN  ++DA SC+ ++IW
Sbjct: 159 MPNVSPTITIQGDEA--YAGMSVSGQNSGLGLGSADISNGNLNNGILSDAASCI-TNIW 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420842|ref|NP_568457.1| basic leucine zipper 9 [Arabidopsis thaliana] gi|75309705|sp|Q9FUD3.1|BZIP9_ARATH RecName: Full=Basic leucine zipper 9; Short=AtbZIP9; Short=bZIP protein 9; AltName: Full=Basic leucine zipper OPAQUE 2 homolog 2; Short=Basic leucine zipper O2 homolog 2 gi|10954097|gb|AAG25728.1|AF310223_1 bZIP protein BZO2H2 [Arabidopsis thaliana] gi|332005980|gb|AED93363.1| basic leucine zipper 9 [Arabidopsis thaliana]

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/250 (50%), Positives = 157/250 (62%), Gaps = 34/250 (13%)

Query: 152 DSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQST 211
           D+QSSIC     N SA +P S +K   +    R  +SGSS  +SDDED E EAG  E + 
Sbjct: 62  DAQSSICE----NLSADSPVSANKPE-VRGGVRRTTSGSSHVNSDDEDAETEAGQSEMTN 116

Query: 212 DHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKE 271
           D P DLKRIRRM SNRESA+RSR+RKQ ++ +LE QV+ LKG+N+TLYKQ  DA QQ++ 
Sbjct: 117 D-PNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRS 175

Query: 272 ANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHNNN 331
           A TNNRVLKSDVE LR KV+LAED+V+ GSLT  LNQLLQ+HLSP    I+S+       
Sbjct: 176 AGTNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQTHLSPPSHSISSL------- 228

Query: 332 NNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSSLGVGLANPDIHNSNNTAVNDA 391
                   H   N SP +TV  + + F  + + SG  SS G+G              ++A
Sbjct: 229 --------HYTGNTSPAITVHSDQSLFPGM-TLSGQNSSPGLG-----------NVSSEA 268

Query: 392 LSCVSSDIWP 401
           +SCV SDIWP
Sbjct: 269 VSCV-SDIWP 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808487|ref|XP_002872127.1| hypothetical protein ARALYDRAFT_910526 [Arabidopsis lyrata subsp. lyrata] gi|297317964|gb|EFH48386.1| hypothetical protein ARALYDRAFT_910526 [Arabidopsis lyrata subsp. lyrata]

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/271 (47%), Positives = 161/271 (59%), Gaps = 43/271 (15%)

Query: 131 WSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGS 190
           WS+   P  + R         D+QSSIC     N SA +P S +K    +   R   SGS
Sbjct: 49  WSEGLIPAGTFR---------DAQSSICE----NLSADSPVSANKPEVRE-GVRRTVSGS 94

Query: 191 SADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVER 250
           S  +SD+ED E EAG  E + D P DLKRIRRM SNRESA+RSR+RKQ ++ +LE QV+ 
Sbjct: 95  SHVNSDEEDAETEAGQSEMTND-PNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDS 153

Query: 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLL 310
           LKG+N+TLYKQ  DA QQ++ A TNNRVLKSDVE LR KV+LAED+V+ GSLT  LNQLL
Sbjct: 154 LKGDNSTLYKQLIDATQQFRSAGTNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLL 213

Query: 311 QSHLSPVLQPINSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSS 370
           Q+HL P    INS+               H   N SP +TV  + + F  + + SG  SS
Sbjct: 214 QTHLRPPSHSINSL---------------HYTGNTSPAITVHSDQSLFPGM-TLSGQNSS 257

Query: 371 LGVGLANPDIHNSNNTAVNDALSCVSSDIWP 401
            G+G              ++A+SCV SDIWP
Sbjct: 258 SGLG-----------NVSSEAVSCV-SDIWP 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13365772|dbj|BAB39174.1| RISBZ4 [Oryza sativa] gi|125538288|gb|EAY84683.1| hypothetical protein OsI_06055 [Oryza sativa Indica Group] gi|125580996|gb|EAZ21927.1| hypothetical protein OsJ_05580 [Oryza sativa Japonica Group]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/217 (51%), Positives = 149/217 (68%), Gaps = 21/217 (9%)

Query: 104 DMAMKGIISSNTGTGGVSVTTGNLHKRWSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTG 163
           D++  G   S+T TGG+       +  W QSQN N+   +    +TTI+SQSSIC     
Sbjct: 29  DLSGFGFADSSTITGGIP------NHIWPQSQNLNARHPAV---STTIESQSSIC----- 74

Query: 164 NWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRM 223
             +AA+PTS    N  + +    +SGS  D   +  L+IE GPCEQST+ P+D+KR+RRM
Sbjct: 75  --AAASPTSATNLNMKESQTLGGTSGS--DSESESLLDIEGGPCEQSTN-PLDVKRVRRM 129

Query: 224 VSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283
           VSNRESARRSRKRKQAH+ +LE QV++L+GENA+L+KQ TDA QQ+  + T+NR+LKSDV
Sbjct: 130 VSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDV 189

Query: 284 EALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQP 320
           EALR KV++AED+V+ G+L+CGL  L    LSP L P
Sbjct: 190 EALRVKVKMAEDMVARGALSCGLGHL--GGLSPALNP 224

Source: Oryza sativa

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115444547|ref|NP_001046053.1| Os02g0175100 [Oryza sativa Japonica Group] gi|113535584|dbj|BAF07967.1| Os02g0175100, partial [Oryza sativa Japonica Group]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/217 (51%), Positives = 149/217 (68%), Gaps = 21/217 (9%)

Query: 104 DMAMKGIISSNTGTGGVSVTTGNLHKRWSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTG 163
           D++  G   S+T TGG+       +  W QSQN N+   +    +TTI+SQSSIC     
Sbjct: 68  DLSGFGFADSSTITGGIP------NHIWPQSQNLNARHPAV---STTIESQSSIC----- 113

Query: 164 NWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRM 223
             +AA+PTS    N  + +    +SGS  D   +  L+IE GPCEQST+ P+D+KR+RRM
Sbjct: 114 --AAASPTSATNLNMKESQTLGGTSGS--DSESESLLDIEGGPCEQSTN-PLDVKRVRRM 168

Query: 224 VSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283
           VSNRESARRSRKRKQAH+ +LE QV++L+GENA+L+KQ TDA QQ+  + T+NR+LKSDV
Sbjct: 169 VSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDV 228

Query: 284 EALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQP 320
           EALR KV++AED+V+ G+L+CGL  L    LSP L P
Sbjct: 229 EALRVKVKMAEDMVARGALSCGLGHL--GGLSPALNP 263

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49388982|dbj|BAD26199.1| RISBZ4 [Oryza sativa Japonica Group] gi|50251200|dbj|BAD27607.1| RISBZ4 [Oryza sativa Japonica Group] gi|215697503|dbj|BAG91497.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/217 (51%), Positives = 148/217 (68%), Gaps = 22/217 (10%)

Query: 104 DMAMKGIISSNTGTGGVSVTTGNLHKRWSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTG 163
           D++  G   S+T TGG+       +  W QSQN N+   +    +TTI+SQSSIC     
Sbjct: 29  DLSGFGFADSSTITGGIP------NHIWPQSQNLNARHPAV---STTIESQSSIC----- 74

Query: 164 NWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRM 223
              AA+PTS    N  + +    +SGS  D   +  L+IE GPCEQST+ P+D+KR+RRM
Sbjct: 75  ---AASPTSATNLNMKESQTLGGTSGS--DSESESLLDIEGGPCEQSTN-PLDVKRVRRM 128

Query: 224 VSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV 283
           VSNRESARRSRKRKQAH+ +LE QV++L+GENA+L+KQ TDA QQ+  + T+NR+LKSDV
Sbjct: 129 VSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDV 188

Query: 284 EALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQP 320
           EALR KV++AED+V+ G+L+CGL  L    LSP L P
Sbjct: 189 EALRVKVKMAEDMVARGALSCGLGHL--GGLSPALNP 223

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444300786|gb|AGD98702.1| bZIP transcription factor family protein 4 [Camellia sinensis]

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 142/273 (52%), Positives = 184/273 (67%), Gaps = 33/273 (12%)

Query: 131 WSQSQNPNSSKRSTIVTTTTIDSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGS 190
           WSQ+    +SK+S+I  T  +DSQSSIC         ++P S  K    D +A  A+SGS
Sbjct: 71  WSQNI---TSKQSSI--TAPLDSQSSIC--------VSSPYSTTKPKGRDNQATGATSGS 117

Query: 191 SADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVER 250
           S + SDD+DLE EAGPCEQSTD  +D+KRI+RMVSNRESARRSR RKQA + ELE QV++
Sbjct: 118 SHEQSDDDDLETEAGPCEQSTDPTMDVKRIKRMVSNRESARRSRSRKQAQLAELEQQVDQ 177

Query: 251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLL 310
           L+G+NA L+KQ TDA QQ+K+A TNNRVLKSDVEALRAKV+LAED+V+ GSLT  L+ LL
Sbjct: 178 LRGDNAALFKQLTDATQQFKDATTNNRVLKSDVEALRAKVKLAEDMVARGSLTSSLSHLL 237

Query: 311 QSHLSPVLQPINSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSS 370
           Q+HL           T+  + N+ N  G   L N+SPT+TV G+  S+  + + SG  S+
Sbjct: 238 QNHL-----------TTPQSFNSQNMCG---LGNLSPTITVGGDDVSYPGM-TVSGKNST 282

Query: 371 LGVGLANPDIHNSN--NTAVNDALSCVSSD-IW 400
           L  GL N D  N +  N  V++  SCVS + +W
Sbjct: 283 L--GLENADAFNGSVKNGIVSETTSCVSDNWLW 313

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436639|ref|XP_003588595.1| Transcription factor bZIP [Medicago truncatula] gi|355477643|gb|AES58846.1| Transcription factor bZIP [Medicago truncatula]

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/264 (52%), Positives = 183/264 (69%), Gaps = 30/264 (11%)

Query: 141 KRSTIVTTTTIDSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLASSGSSADHSDDEDL 200
           K STI  T TI+SQSSI  +VT   SA  P+S  +  T   K    +SGSS D SD++D 
Sbjct: 103 KNSTI--TATIESQSSISATVTSPVSANKPSSSRENQT---KGVTTTSGSSRDPSDEDD- 156

Query: 201 EIEAGPCEQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYK 260
             EAGPCEQST +P+D+KR+RR VSNRESARRSR+RKQAH+ +LE+QVE+L+ ENA+L+K
Sbjct: 157 --EAGPCEQST-NPVDMKRLRRKVSNRESARRSRRRKQAHLADLEVQVEQLRLENASLFK 213

Query: 261 QFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQP 320
           Q TDA+QQ+++ANTNNRVLKSDVEALRAKV+LAED+VS G+L    NQLLQ+        
Sbjct: 214 QLTDASQQFRDANTNNRVLKSDVEALRAKVKLAEDMVSRGTLPTFNNQLLQNQ-----SQ 268

Query: 321 INSIITSHNNNNNNNNIGRHQLANVSPTLTVPGNGASFSAISSTSGHRSSLGVGLANPDI 380
           +N+     NN+N         +A+VSPT+TV GN AS+      SG  S++G+G  + DI
Sbjct: 269 LNTTPPQINNSN------LRCMAHVSPTITVHGNDASYGV----SGQNSAIGLG--DFDI 316

Query: 381 ---HNSNNTAVNDALSCVSSDIWP 401
              H+ NN   +DA+S ++S +WP
Sbjct: 317 SCSHDFNNGVNSDAVSSLTS-LWP 339

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
TAIR|locus:2149403	277	BZIP9 "AT5G24800" [Arabidopsis	0.491	0.711	0.495	4.6e-41
TAIR|locus:2184251	314	BZO2H3 "AT5G28770" [Arabidopsi	0.241	0.308	0.52	3.4e-22
TAIR|locus:505006398	403	BZIP25 "basic leucine zipper 2	0.231	0.230	0.489	1.4e-18
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.211	0.497	0.352	4.2e-11
TAIR|locus:2096024	146	BZIP53 "AT3G62420" [Arabidopsi	0.209	0.575	0.380	1.5e-10
TAIR|locus:2009932	196	bZIP58 "AT1G13600" [Arabidopsi	0.182	0.372	0.452	9.4e-10
TAIR|locus:2018411	173	bZIP44 "AT1G75390" [Arabidopsi	0.226	0.526	0.369	2e-09
TAIR|locus:2139584	159	GBF6 "AT4G34590" [Arabidopsis	0.219	0.553	0.329	2.6e-09
TAIR|locus:2827461	166	bZIP48 "AT2G04038" [Arabidopsi	0.189	0.457	0.434	7.4e-09
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.199	0.462	0.387	9.5e-09

TAIR|locus:2149403 BZIP9 "AT5G24800" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 102/206 (49%), Positives = 128/206 (62%)

Query:   152 DSQSSICGSVTGNWSAATPTSGDKTNTIDCKARLAXXXXXXXXXXXXXLEIEAGPCEQST 211
             D+QSSIC     N SA +P S +K   +    R                E EAG  E + 
Sbjct:    62 DAQSSICE----NLSADSPVSANKPE-VRGGVRRTTSGSSHVNSDDEDAETEAGQSEMTN 116

Query:   212 DHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKE 271
             D P DLKRIRRM SNRESA+RSR+RKQ ++ +LE QV+ LKG+N+TLYKQ  DA QQ++ 
Sbjct:   117 D-PNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRS 175

Query:   272 ANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPVLQPINSIITSHXXX 331
             A TNNRVLKSDVE LR KV+LAED+V+ GSLT  LNQLLQ+HLSP   P +SI + H   
Sbjct:   176 AGTNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQTHLSP---PSHSISSLHYTG 232

Query:   332 XXXXXIGRHQLANVSPTLTVPGNGAS 357
                  I  H   ++ P +T+ G  +S
Sbjct:   233 NTSPAITVHSDQSLFPGMTLSGQNSS 258

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IPI

TAIR|locus:2184251 BZO2H3 "AT5G28770" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 52/100 (52%), Positives = 74/100 (74%)

Query:   213 HPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA 272
             +P ++KR++RM+SNRESARRSR+RKQAH+ ELE QV +L+ EN+ L K  TD  Q + +A
Sbjct:   148 NPTNVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDA 207

Query:   273 NTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQS 312
             +  NRVLK+++E LRAKV++AE+ V    LT G N +  +
Sbjct:   208 SVENRVLKANIETLRAKVKMAEETVK--RLT-GFNPMFHN 244

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:505006398 BZIP25 "basic leucine zipper 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 47/96 (48%), Positives = 68/96 (70%)

Query:   214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEAN 273
             P D+KR RRM+SNRESARRSR+RKQ  M E + QV +L+ E++TL  + +D   +Y  A 
Sbjct:   227 PTDVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYDAAA 286

Query:   274 TNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQL 309
              +NR+L++D+E LR KV++AE+ V    +T G+N L
Sbjct:   287 VDNRILRADIETLRTKVKMAEETVK--RVT-GVNPL 319

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:2000693 "positive regulation of seed maturation" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 30/85 (35%), Positives = 51/85 (60%)

Query:   215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANT 274
             +D ++ +RM+SNRESARRSR RKQ H+ +L  Q+ +L  +N  +    T  +Q Y +   
Sbjct:    28 VDERKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQA 87

Query:   275 NNRVLKSDVEALRAKVRLAEDVVSV 299
              N VL + +E L  +++   ++V +
Sbjct:    88 ENSVLTAQMEELSTRLQSLNEIVDL 112

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2096024 BZIP53 "AT3G62420" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/84 (38%), Positives = 53/84 (63%)

Query:   216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN 275
             D ++ +RM+SNRESARRSR RKQ  + +L  +V  LK +NA + +Q  +A+++Y E  + 
Sbjct:    23 DERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYIEMESK 82

Query:   276 NRVLKSDVEALRAKVRLAEDVVSV 299
             N VL++    L  ++R    V+ +
Sbjct:    83 NNVLRAQASELTDRLRSLNSVLEM 106

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:2000693 "positive regulation of seed maturation" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2009932 bZIP58 "AT1G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 33/73 (45%), Positives = 45/73 (61%)

Query:   215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANT 274
             ID ++ RRM+SNRESARRSR RKQ H+ EL  QV RL+ +N  L  +    ++ ++ A  
Sbjct:    83 IDERKQRRMISNRESARRSRMRKQRHLDELWSQVIRLRTDNHCLMDKLNRVSESHELALK 142

Query:   275 NNRVLKSDVEALR 287
              N  LK +   LR
Sbjct:   143 ENAKLKEETSDLR 155

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2018411 bZIP44 "AT1G75390" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 34/92 (36%), Positives = 50/92 (54%)

Query:   215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANT 274
             ID ++ +R  SNRESARRSR RKQ H+ +L  QV  L+ ENA +        Q Y     
Sbjct:    38 IDERKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLRKENAQIVAGIAVTTQHYVTIEA 97

Query:   275 NNRVLKSDVEALRAKVRLAEDVVS-VGSLTCG 305
              N +L++ V  L  +++   ++V  V S + G
Sbjct:    98 ENDILRAQVLELNHRLQSLNEIVDFVESSSSG 129

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009845 "seed germination" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2139584 GBF6 "AT4G34590" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 29/88 (32%), Positives = 50/88 (56%)

Query:   210 STDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269
             S +  ++ ++ +RM+SNRESARRSR +KQ  + +L  QV  LK EN  +    +   Q Y
Sbjct:    19 SEESLMEQRKRKRMLSNRESARRSRMKKQKLLDDLTAQVNHLKKENTEIVTSVSITTQHY 78

Query:   270 KEANTNNRVLKSDVEALRAKVRLAEDVV 297
                   N VL++ ++ L  +++   D++
Sbjct:    79 LTVEAENSVLRAQLDELNHRLQSLNDII 106

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0080149 "sucrose induced translational repression" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=IEP

TAIR|locus:2827461 bZIP48 "AT2G04038" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 33/76 (43%), Positives = 43/76 (56%)

Query:   215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANT 274
             +D ++ RRM+SNRESARRSR RKQ H+ EL  QV RL+ EN  L  +    ++       
Sbjct:    71 LDERKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQNCVLK 130

Query:   275 NNRVLKSDVEALRAKV 290
              N  LK +   LR  V
Sbjct:   131 ENSKLKEEASDLRQLV 146

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/80 (38%), Positives = 49/80 (61%)

Query:   208 EQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQ 267
             +Q+ ++ I+ ++ RRM+SNRESARRSR RKQ H+ EL  QV  L+ EN  L  +  + ++
Sbjct:    71 QQTNNNIINERKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSE 130

Query:   268 QYKEANTNNRVLKSDVEALR 287
              + +    N  LK +   L+
Sbjct:   131 SHDKVLQENAQLKEETFELK 150

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	401
smart00338	65	smart00338, BRLZ, basic region leucin zipper	9e-18
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	1e-14
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	2e-10
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	4e-09
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.001

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 76.4 bits (189), Expect = 9e-18
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 14/76 (18%)

Query: 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN 275
           D KR RR   NRE+ARRSR+RK+A ++ELE +VE+L+ EN  L K+              
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKE-------------- 48

Query: 276 NRVLKSDVEALRAKVR 291
              L+ ++E L++++ 
Sbjct: 49  IERLRRELEKLKSELE 64

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 7/69 (10%)

Query: 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN 275
           +LKR RR   NRE+ARRSR RK+A+++ELE +V+ L+ EN TL  +     ++ K+    
Sbjct: 3   ELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSE----LERLKKECAK 58

Query: 276 NRVLKSDVE 284
              LKS+ E
Sbjct: 59  ---LKSENE 64

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261
           D  R RR   N E+ARRSR++K+   +ELE +V+ L+ ENA L ++
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQK 47

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 21/42 (50%), Positives = 27/42 (64%)

Query: 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATL 258
             R R+   NRE+ARRSR RK   M++LE +VE L  EN+ L
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDL 42

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 34/246 (13%)

Query: 53  PNPTVDDHNINNNINNNIANIHQHQHLHHHFFQDGHDQHLSFAFKNHRDDEDMAMKGIIS 112
           P      ++  +  +N+     ++           + QH S    NH             
Sbjct: 232 PVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNH------------H 279

Query: 113 SNTGTGGVSVTTGNLHKRWSQSQNPNSSKRSTIVTTT-------TIDSQSSICGSVTGNW 165
           S      +       +       + +S+  S   T+        +I S+SS     +   
Sbjct: 280 SKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRN 339

Query: 166 SAATPTSGDKTNTIDCKARLASSGSSADHSDDEDLEIEAGPCEQSTDHPIDLKRIRRMVS 225
            + +      +           S  S+  SD+E  +  A    +S+    D K+    +S
Sbjct: 340 KSNSSPKSHSSA--------NGSVPSSSVSDNESKQKRAS---KSSSGARDSKKDASGMS 388

Query: 226 NRESARRSRKRKQ----AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS 281
              +        +    + ++ LE  +++L+ E     +  ++   Q     +  R LKS
Sbjct: 389 ANGTVENCIPENKISTPSAIERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKS 448

Query: 282 DVEALR 287
           D+  L+
Sbjct: 449 DLGQLK 454

This entry is a highly conserved protein present in eukaryotes. Length = 680

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
smart00338	65	BRLZ basic region leucin zipper.	99.35
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.32
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.3
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.16
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.09
KOG3584	348	consensus cAMP response element binding protein an	99.05
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.0
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.33
PF12498	115	bZIP_C: Basic leucine-zipper C terminal; InterPro:	98.12
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.1
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.55
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.48
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	97.06
KOG3119	269	consensus Basic region leucine zipper transcriptio	96.91
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	95.79
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.7
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	95.57
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.45
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.35
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	94.97
PRK10884	206	SH3 domain-containing protein; Provisional	94.95
PRK13169	110	DNA replication intiation control protein YabA; Re	94.85
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	94.85
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	94.83
PRK13169	110	DNA replication intiation control protein YabA; Re	94.61
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.57
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	94.45
PRK10884	206	SH3 domain-containing protein; Provisional	94.4
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	94.17
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.14
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.78
PRK11637	428	AmiB activator; Provisional	93.32
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.29
COG4467	114	Regulator of replication initiation timing [Replic	93.05
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.89
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	92.59
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.5
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.73
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.55
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	91.48
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	91.45
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.36
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	90.99
COG4942	420	Membrane-bound metallopeptidase [Cell division and	90.84
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	90.72
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	90.21
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	89.83
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	89.76
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.64
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	89.53
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.36
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	89.11
KOG3119	269	consensus Basic region leucine zipper transcriptio	89.09
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	88.9
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	88.88
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	88.78
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.63
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.59
COG4467	114	Regulator of replication initiation timing [Replic	88.03
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.95
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	87.75
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	87.63
PRK11637	428	AmiB activator; Provisional	87.35
PHA02562	562	46 endonuclease subunit; Provisional	86.98
PRK10803	263	tol-pal system protein YbgF; Provisional	86.95
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.92
PRK09039	343	hypothetical protein; Validated	86.63
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.48
PRK15422	79	septal ring assembly protein ZapB; Provisional	86.27
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	86.22
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.16
PRK04406	75	hypothetical protein; Provisional	86.03
PRK02119	73	hypothetical protein; Provisional	85.94
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	85.8
PRK02119	73	hypothetical protein; Provisional	85.79
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	85.79
PRK09039	343	hypothetical protein; Validated	85.71
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	85.31
smart00340	44	HALZ homeobox associated leucin zipper.	85.26
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.07
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	85.06
PF14662	193	CCDC155: Coiled-coil region of CCDC155	84.94
PF10186	302	Atg14: UV radiation resistance protein and autopha	84.76
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	84.29
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	84.27
PRK00888	105	ftsB cell division protein FtsB; Reviewed	84.16
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	83.98
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.89
COG4026	290	Uncharacterized protein containing TOPRIM domain,	83.81
PRK13922	276	rod shape-determining protein MreC; Provisional	83.79
KOG1962	216	consensus B-cell receptor-associated protein and r	83.76
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.53
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	83.37
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	83.23
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	83.2
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	83.12
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	83.0
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.9
PF15058	200	Speriolin_N: Speriolin N terminus	82.76
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	82.6
PRK04325	74	hypothetical protein; Provisional	82.58
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	82.5
smart00338	65	BRLZ basic region leucin zipper.	82.49
PRK02793	72	phi X174 lysis protein; Provisional	82.45
PRK00295	68	hypothetical protein; Provisional	82.42
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	82.31
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	82.3
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	82.27
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	82.26
PF15294	278	Leu_zip: Leucine zipper	82.19
PHA03162	135	hypothetical protein; Provisional	82.08
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	82.06
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	82.02
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	82.0
PF14662	193	CCDC155: Coiled-coil region of CCDC155	82.0
PRK02793	72	phi X174 lysis protein; Provisional	81.94
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	81.81
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	81.74
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	81.6
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	81.51
PHA03155	115	hypothetical protein; Provisional	81.45
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	81.44
PRK00846	77	hypothetical protein; Provisional	81.39
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	81.37
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	81.22
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	80.99
PRK04325	74	hypothetical protein; Provisional	80.97
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	80.86
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	80.49
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	80.45
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	80.34
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	80.3
COG4942	420	Membrane-bound metallopeptidase [Cell division and	80.13
KOG3564	604	consensus GTPase-activating protein [General funct	80.11
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.05
PRK04406	75	hypothetical protein; Provisional	80.03

>smart00338 BRLZ basic region leucin zipper

Probab=99.35  E-value=5.2e-12  Score=97.92  Aligned_cols=62  Identities=42%  Similarity=0.549  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015739          215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNN  276 (401)
Q Consensus       215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~EN  276 (401)
                      .++|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..++
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999999999987766655554443

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.32  E-value=9.8e-12  Score=96.22  Aligned_cols=62  Identities=40%  Similarity=0.539  Sum_probs=55.0

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015739          215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNN  276 (401)
Q Consensus       215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~EN  276 (401)
                      .+.|+.+|+++||+||++||.||+.|+.+||.+|..|+.+|..|..++..|...+..|..+|
T Consensus         2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46789999999999999999999999999999999999999999999988888877777666

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.30  E-value=3.4e-11  Score=115.90  Aligned_cols=84  Identities=27%  Similarity=0.346  Sum_probs=78.5

Q ss_pred             ChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          213 HPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       213 ~~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      -..|+|-+||||+||.+|+-+|.|||++++++|.+|..|..||+.|..+...|+.+.+.|.++|.+|..+++.|++.+.-
T Consensus        64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~  143 (292)
T KOG4005|consen   64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE  143 (292)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             HHhH
Q 015739          293 AEDV  296 (401)
Q Consensus       293 aE~l  296 (401)
                      ..+.
T Consensus       144 ~~~~  147 (292)
T KOG4005|consen  144 LKQQ  147 (292)
T ss_pred             hHHH
Confidence            5544

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.16  E-value=6.3e-11  Score=123.85  Aligned_cols=70  Identities=39%  Similarity=0.418  Sum_probs=66.8

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV  283 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv  283 (401)
                      .+--||+.|||+|||||..||+|||+|+..||.+++.|..||+.|+++...|++++..+..||.+||---
T Consensus       277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvps  346 (655)
T KOG4343|consen  277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPS  346 (655)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCC
Confidence            7788999999999999999999999999999999999999999999999999999999999999998643

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.09  E-value=1.1e-10  Score=120.61  Aligned_cols=75  Identities=32%  Similarity=0.442  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      +...||.||||+|++||+.||+|||+|++.||.+|.....||++|.+++.       .++.+|+.|-+++..|++.|.+.
T Consensus       247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v~q~  319 (472)
T KOG0709|consen  247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLVIQV  319 (472)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHHhhc
Confidence            56779999999999999999999999999999999999999999998876       56788999999999999888655


Q ss_pred             Hh
Q 015739          294 ED  295 (401)
Q Consensus       294 E~  295 (401)
                      -.
T Consensus       320 an  321 (472)
T KOG0709|consen  320 AN  321 (472)
T ss_pred             cc
Confidence            43

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.05  E-value=3.3e-10  Score=111.65  Aligned_cols=57  Identities=30%  Similarity=0.428  Sum_probs=52.4

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYK  270 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~  270 (401)
                      +...||+-|++||||+||.||+|||+|+++||.+|..|+.+|..|-.+|..|++-|-
T Consensus       287 e~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc  343 (348)
T KOG3584|consen  287 EATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC  343 (348)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence            567899999999999999999999999999999999999999999999988776553

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.00  E-value=2.4e-09  Score=80.83  Aligned_cols=51  Identities=43%  Similarity=0.602  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQ  267 (401)
Q Consensus       216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~q  267 (401)
                      ++++.||+ +||++|++||.||++++.+|+.+|..|+.+|..|..++..|.+
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56777888 9999999999999999999999999999999999888877654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.33  E-value=2e-06  Score=84.10  Aligned_cols=60  Identities=38%  Similarity=0.485  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      .|-.|.+++||++|.+||+||.+||..||.+|..|+.+|..|...+.              .|+.++.+++++|
T Consensus       205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~--------------~l~~~v~e~k~~V  264 (279)
T KOG0837|consen  205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELS--------------KLKEQVAELKQKV  264 (279)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH--------------HHHHHHHHHHHHH
Confidence            34445589999999999999999999999999999999999987774              5777888888877

>PF12498 bZIP_C: Basic leucine-zipper C terminal; InterPro: IPR020983 Basic leucine-zipper (bZIP) proteins are found in eukaryotes

Probab=98.12  E-value=3.8e-06  Score=73.18  Aligned_cols=102  Identities=22%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhHhhhccccccccccccccCCCC-----C-CC---CcccccccCCCCCCCccccccccCCCCcccccC--
Q 015739          285 ALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPV-----L-QP---INSIITSHNNNNNNNNIGRHQLANVSPTLTVPG--  353 (401)
Q Consensus       285 ~Lrakvk~aE~lv~~~~~t~~~n~l~~~~~s~~-----~-~~---~n~~~s~~~~~~~~~n~~~~~~~~~s~~~~~~g--  353 (401)
                      +||+||||+||+|+|.   ++++.+++..+..+     . .+   .+...+.. .+.+.+|.  .+....++.+++++  
T Consensus         1 TLRAKVKMAEe~VkRv---Tg~n~~~~~~~~~ss~~~p~~~~~s~~~~~~~~P-iq~~~~~~--~~~~~~~~~i~~~~~~   74 (115)
T PF12498_consen    1 TLRAKVKMAEETVKRV---TGMNPMFQAISQMSSMGMPFSSSPSPADSSAAVP-IQDNSNNY--FHQPNPNPTISVHGNN   74 (115)
T ss_pred             ChhHHHHHHHHHHHHH---hccCccccccccCCCCCCCCCCCcccccccccCC-ccCCchhh--ccCCCCCCCcCCCCcc
Confidence            4899999999999993   35666655432111     1 00   11111110 11222344  66788888888877  


Q ss_pred             CCCCccccccCCCCCCccccCCCCCc-ccCCccccccccccc
Q 015739          354 NGASFSAISSTSGHRSSLGVGLANPD-IHNSNNTAVNDALSC  394 (401)
Q Consensus       354 ~~a~~~~~~~~~~~ns~~~~~~~~~~-~~~~~~~~~~~~~~~  394 (401)
                      ....++++ ..+.+... ..+|.... |+.+.+|+...+.+|
T Consensus        75 ~~~~~~~~-~~~~~~~~-t~smqrvaslEhlQkri~~g~~~~  114 (115)
T PF12498_consen   75 DNPEPGGA-FVGGKMGR-TASMQRVASLEHLQKRIRGGPTSS  114 (115)
T ss_pred             cccccccc-cccccccC-CccCccchhHHHHHHHhcCCCCCC
Confidence            44556666 56666554 33455544 777778887777666

They are typically between 174 and 411 amino acids in length. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin []. This entry represents a C-terminal domain found in bZIP proteins. It is found in association with PF00170 from PFAM. There is a conserved KVK sequence motif and a single completely conserved residue K that may be functionally important.

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.10  E-value=5e-08  Score=80.94  Aligned_cols=56  Identities=34%  Similarity=0.488  Sum_probs=47.3

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY  269 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~  269 (401)
                      ..+.|..||.++||.+|++||.||..++.+||.++..|+.+...|..++..+.+.+
T Consensus        26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~   81 (92)
T PF03131_consen   26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER   81 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999988887777776666554443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.55  E-value=0.00052  Score=68.39  Aligned_cols=55  Identities=27%  Similarity=0.363  Sum_probs=44.9

Q ss_pred             hhHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          215 IDLKRIRR-MVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY  269 (401)
Q Consensus       215 ~e~KR~RR-~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~  269 (401)
                      .++|++|| ++.|..+|.|.|+||++..+.|+.++..|+.+|.+|+.++..+.+++
T Consensus       223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI  278 (294)
T KOG4571|consen  223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREI  278 (294)
T ss_pred             CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455544 56666779999999999999999999999999999999987665544

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.48  E-value=0.0007  Score=60.70  Aligned_cols=66  Identities=26%  Similarity=0.389  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      .-.|..||-|+||=.|+-||-|+..+-.+||.+-..|..|...|+              .||..++.++..++.|.+.+.
T Consensus        50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~--------------~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLK--------------EENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence            455777899999999999999999988888877666655554444              456667777777776665443

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=97.06  E-value=0.00099  Score=71.91  Aligned_cols=65  Identities=31%  Similarity=0.402  Sum_probs=52.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          219 RIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       219 R~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      -.||+=|||.+|+++|+||..-|..||..|..|+.|-++|.++-..+...       =.++|.++..|-++|
T Consensus       491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~-------L~~~kqqls~L~~~V  555 (604)
T KOG3863|consen  491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDST-------LGVMKQQLSELYQEV  555 (604)
T ss_pred             ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            34788899999999999999999999999999999999887765543333       356777777776665

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=96.91  E-value=0.0039  Score=61.24  Aligned_cols=43  Identities=30%  Similarity=0.455  Sum_probs=37.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD  264 (401)
Q Consensus       222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~  264 (401)
                      |+-+|=+++||||.+++....++..+|..|+.||..|+.++..
T Consensus       198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~  240 (269)
T KOG3119|consen  198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ  240 (269)
T ss_pred             HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445889999999999999999999999999999888877743

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=95.79  E-value=0.091  Score=42.21  Aligned_cols=56  Identities=27%  Similarity=0.170  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      +..||.+|++|-.....|+.+...|.++...+..|++.|+.+.+.-+.+|   |.|+.+
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv---EamI~R   57 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV---EAMITR   57 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh
Confidence            56788888888888888888888888888888888888888888877765   455554

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.70  E-value=0.16  Score=41.34  Aligned_cols=54  Identities=19%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      +.++.||.+|.++-.....|..++..|+++...+..+|..|+.+.+.|++....
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~   57 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            357788888888777777777777777777666667777777766666654443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=95.57  E-value=0.11  Score=42.38  Aligned_cols=59  Identities=25%  Similarity=0.325  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYK--------EANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~--------~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      |.+.|.+++.|+.||=.|+-++-.|.+++.        .+..+|-.||.+++.|+..++-...++..
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~   68 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE   68 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999888876        45889999999999999999888777654

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.45  E-value=0.044  Score=40.86  Aligned_cols=42  Identities=19%  Similarity=0.437  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739          250 RLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR  291 (401)
Q Consensus       250 ~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk  291 (401)
                      +|+.+...|+.....|...+..|..||..|++++..|..+++
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            567777778888888888888888899999999998887764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.35  E-value=0.11  Score=45.06  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      |=.++..|+.....|..++..|+.+...+..||..|+.+.+.||.++...+
T Consensus         6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen    6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455555555555555666666666667777777777777777665554

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=94.97  E-value=0.13  Score=44.67  Aligned_cols=50  Identities=24%  Similarity=0.324  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      ..+.+||.++..|-.+...|+.++..|.++...|..||..||..+..+.+
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999999999999999876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.95  E-value=0.26  Score=47.05  Aligned_cols=52  Identities=10%  Similarity=0.075  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      ++..+|+.+++.+..+..+|..++..|++++..+..+++.|++++..++..+
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555555566666666666666665554

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=94.85  E-value=0.14  Score=44.81  Aligned_cols=49  Identities=18%  Similarity=0.242  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      |=.+|..|+.....|..++..|+++...+..||..|+.+-+.||.++..
T Consensus         6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~   54 (110)
T PRK13169          6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE   54 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555556666666666666666665543

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=94.85  E-value=0.065  Score=56.94  Aligned_cols=51  Identities=25%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK  289 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak  289 (401)
                      ..+++||+|++.|+.|.+.|.++...+++++..++.||+.|+.+++.+.++
T Consensus        76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~  126 (475)
T PRK13729         76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN  126 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            357899999999999999999999999999999999999999999766554

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.83  E-value=0.21  Score=41.13  Aligned_cols=53  Identities=23%  Similarity=0.406  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      -+.-|..+|+.|+.+|..|..+...+++....|..||..||.+-...+.+++.
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs   71 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999998887776653

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=94.61  E-value=0.23  Score=43.53  Aligned_cols=50  Identities=24%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      ..+..||.++..|-.+-..|+.++..+.++...|..||..||..+..+.+
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46889999999999999999999999999999999999999999999844

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.57  E-value=0.96  Score=42.11  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      ....++++.+...+..-+.-.......|.+++.-++.|+.|...|.-++..+.+++..+..||+.|-.+.-..  +-+.|
T Consensus       112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~--k~~eA  189 (194)
T PF08614_consen  112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR--KAQEA  189 (194)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            3455666677777777777777777889999999999999999999999999999999999999998876543  44445


Q ss_pred             HhH
Q 015739          294 EDV  296 (401)
Q Consensus       294 E~l  296 (401)
                      +.|
T Consensus       190 e~m  192 (194)
T PF08614_consen  190 ERM  192 (194)
T ss_dssp             HH-
T ss_pred             HHh
Confidence            544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=94.45  E-value=0.32  Score=45.33  Aligned_cols=53  Identities=15%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      ....++.||..|..++..|++++..|..||..|+.++..++...+++=.++.+
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R  150 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR  150 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888888888888888888888888888888887777666655554

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.40  E-value=0.77  Score=43.95  Aligned_cols=43  Identities=21%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS  281 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa  281 (401)
                      +.+.+++.++..|+.+|++|..++..++.+...+..+|..++.
T Consensus       125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555555555555544

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=94.17  E-value=0.52  Score=38.03  Aligned_cols=55  Identities=25%  Similarity=0.278  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      +.+++-|..++...+.+|..|..+-.....++..+-.+|..||.+++.|+.+++-
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888888888888888888888888888888899999999999887653

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.14  E-value=0.47  Score=38.18  Aligned_cols=56  Identities=27%  Similarity=0.280  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      +.++.|=..+.+|+.||..|+.++..+...-..+...|..-+.+|+.|=.+++..|
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le   62 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            45788888999999999999999999999999999999999999999988887665

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.78  E-value=0.76  Score=37.40  Aligned_cols=52  Identities=21%  Similarity=0.281  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      +..+=..+..|+.|+..|+.+...+.+....|..+|..|+.+......++..
T Consensus        13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen   13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666777777777777777777788888888888888887777653

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK11637 AmiB activator; Provisional

Probab=93.32  E-value=1.7  Score=44.90  Aligned_cols=59  Identities=14%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          232 RSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       232 RSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      .....-+..+..|+.++..++.+...+..++..+++++..+..+=..|+.++..++..+
T Consensus        68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444556666666666666666666666666665555555555555555554444

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.29  E-value=0.63  Score=38.88  Aligned_cols=51  Identities=24%  Similarity=0.418  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR  291 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk  291 (401)
                      +.=|..+|+.|+.+|..|..++..+......|..+|..||.+-...+.++.
T Consensus        20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr   70 (79)
T PRK15422         20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   70 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777777777777777777788888888888877777664

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=93.05  E-value=0.5  Score=41.66  Aligned_cols=49  Identities=20%  Similarity=0.234  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      +=.+|..|+...-.|.+++..+++++..+..||..|+-+.+.||.++..
T Consensus         6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            3446666666666777888888888888899999999999999888765

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.89  E-value=3.3  Score=36.79  Aligned_cols=74  Identities=18%  Similarity=0.325  Sum_probs=45.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739          218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR  291 (401)
Q Consensus       218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk  291 (401)
                      ++..|=..-|+..-....++..-+..|+..++.|+.+++.+..++..++.+...+..+.+.+...+..++..++
T Consensus        45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~  118 (151)
T PF11559_consen   45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ  118 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556667777777777777777777777777777777776666666655555555555444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=92.59  E-value=2.3  Score=46.29  Aligned_cols=81  Identities=17%  Similarity=0.278  Sum_probs=60.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739          218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV  297 (401)
Q Consensus       218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv  297 (401)
                      |....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|+.+...+++++..++.-+
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi  229 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI  229 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444666666777777777777888888888888888888888888888888888888888888887777777766544


Q ss_pred             h
Q 015739          298 S  298 (401)
Q Consensus       298 ~  298 (401)
                      .
T Consensus       230 ~  230 (546)
T PF07888_consen  230 K  230 (546)
T ss_pred             H
Confidence            3

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.50  E-value=1.8  Score=38.44  Aligned_cols=80  Identities=19%  Similarity=0.371  Sum_probs=39.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          220 IRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       220 ~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      +-.+|.-|.--...|.-=...+..|+.....|+..+..|..++..+++++..+..+-+.|+.++..+..+++...+-+.+
T Consensus        40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k  119 (151)
T PF11559_consen   40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK  119 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555544444444444444444444444455555555555555555555555555555555555555555544444333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.73  E-value=4.4  Score=38.42  Aligned_cols=85  Identities=24%  Similarity=0.370  Sum_probs=57.7

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA---------------NTNNRV  278 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l---------------~~ENr~  278 (401)
                      ..+...+++.+.+-+.-+.+=..-+.++..++.++..|+-|++.|..++..+.+....|               .-.|-.
T Consensus        68 ~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~l  147 (201)
T PF13851_consen   68 EEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLL  147 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677888888887777777777778888888888888777777777665555444               234556


Q ss_pred             HHHHHHHHHHHHHHHHhHhh
Q 015739          279 LKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       279 LKaqve~Lrakvk~aE~lv~  298 (401)
                      |..++..|...+...+..+.
T Consensus       148 LEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen  148 LEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666666666655554433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.55  E-value=6.1  Score=36.03  Aligned_cols=73  Identities=16%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          227 RESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       227 RESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      ....+.-++.+++.++.++..++.+..+-..|.+.+.+.+++...+..+-..++.+.+.|.++++..+++..+
T Consensus       118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  190 (191)
T PF04156_consen  118 LQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQ  190 (191)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444556666666666666666666666665566666666666666667777777777776666665543

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=91.48  E-value=5.9  Score=33.28  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=66.7

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      +.-.+|+.+.+.+=+++-..|.-+.....+|+.+|+.|..+...|..+|.....++..++.-|+.+..++...-..+
T Consensus         7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I   83 (89)
T PF13747_consen    7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI   83 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45668888999999999888888888889999999999999999999999999999999999998888777655544

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=91.45  E-value=0.33  Score=45.30  Aligned_cols=52  Identities=15%  Similarity=0.318  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      |+++|.++.+--.+|.-|..+|    ++...|..+++.||.++..|++.+...+.+
T Consensus         2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~   53 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKL   53 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999988    456778889999999999998888554443

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.36  E-value=5.5  Score=37.91  Aligned_cols=13  Identities=15%  Similarity=0.491  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 015739          279 LKSDVEALRAKVR  291 (401)
Q Consensus       279 LKaqve~Lrakvk  291 (401)
                      ++.++..++.++.
T Consensus       124 ~~~~~~~~~~~l~  136 (302)
T PF10186_consen  124 LQNELEERKQRLS  136 (302)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=90.99  E-value=0.01  Score=61.05  Aligned_cols=51  Identities=33%  Similarity=0.367  Sum_probs=44.7

Q ss_pred             ChhhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 015739          213 HPIDLKRIRRMVSNRESARR---SRKRKQAHMQELELQVERLK-GENATLYKQFT  263 (401)
Q Consensus       213 ~~~e~KR~RR~lsNRESARR---SR~RKk~~L~eLE~qV~~Le-~EN~~L~~qL~  263 (401)
                      .+.+.|+.+|+++|+.+|.+   +|.||+.+...|+.+|+.|+ .++..|..++.
T Consensus       149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is  203 (395)
T KOG1414|consen  149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQIS  203 (395)
T ss_pred             CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccc
Confidence            37899999999999999999   99999999999999999999 77766555443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=90.84  E-value=3.8  Score=43.40  Aligned_cols=73  Identities=21%  Similarity=0.297  Sum_probs=51.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      |+++-+.++=+.-.+.....+.....|+.++..++.+...+..++.........+..+...+...++.|+.+-
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4444444444444455556666778888888888888888888888777777777777777777777776555

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=90.72  E-value=5.8  Score=37.58  Aligned_cols=79  Identities=22%  Similarity=0.271  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHH
Q 015739          216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERL-------KGENATLYKQFTDAAQQYKEA-------NTNNRVLKS  281 (401)
Q Consensus       216 e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~L-------e~EN~~L~~qL~~L~qq~~~l-------~~ENr~LKa  281 (401)
                      +.+-.+.+|....+-+-.+.+++.++..||.++..-       +.+...|..++..++++...+       ..|...|+.
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks  166 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS  166 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777778888888888888888888877755       444444444444444443323       334444555


Q ss_pred             HHHHHHHHHHHHH
Q 015739          282 DVEALRAKVRLAE  294 (401)
Q Consensus       282 qve~Lrakvk~aE  294 (401)
                      +++.|.+.+..++
T Consensus       167 ~~~~l~~~~~~~e  179 (190)
T PF05266_consen  167 EAEALKEEIENAE  179 (190)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555444444

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=90.21  E-value=2.1  Score=35.78  Aligned_cols=45  Identities=16%  Similarity=0.267  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      ++|..++..|+..-..|..++..++..+..|..||+.|..=|..|
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667777888778888888888888888888888888877777

The exact function is unknown.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=89.83  E-value=1.7  Score=34.59  Aligned_cols=48  Identities=17%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA  285 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~  285 (401)
                      .++|.+||.++..++.-...|...+...++++..|..+-+.|+.++..
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   50 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE   50 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999998888888888877666665444444444433333

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=89.76  E-value=4.9  Score=32.74  Aligned_cols=59  Identities=14%  Similarity=0.264  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      +..||.--+.....-......+..++..+.....+|..|++++..|.++|..+...+.+
T Consensus         9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r   67 (70)
T PF04899_consen    9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER   67 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444434444555566777777888888888899999999999999999988777655

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=89.64  E-value=4.8  Score=45.00  Aligned_cols=38  Identities=16%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739          244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS  281 (401)
Q Consensus       244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa  281 (401)
                      +..++.+|+.|...|+.+|...++++..++.|.+.|+.
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666666666666665555544443

; GO: 0016021 integral to membrane

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=89.53  E-value=5  Score=40.01  Aligned_cols=81  Identities=15%  Similarity=0.282  Sum_probs=60.9

Q ss_pred             hhhHHHHHHHHHhHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARR--SRKRKQA-HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARR--SR~RKk~-~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      ..+.||+|-++.---+--|  .|+-+-+ .+.+|+.+-+.|+.||..|+.+...|--+.+++..+=..|++++..|.++.
T Consensus        69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~  148 (292)
T KOG4005|consen   69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ  148 (292)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence            5677888866553322222  2333333 478999999999999999999999998888999988889999999988776


Q ss_pred             HHHH
Q 015739          291 RLAE  294 (401)
Q Consensus       291 k~aE  294 (401)
                      ++-.
T Consensus       149 ~~~~  152 (292)
T KOG4005|consen  149 QHNT  152 (292)
T ss_pred             HHhh
Confidence            6544

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=89.36  E-value=6.1  Score=43.63  Aligned_cols=75  Identities=23%  Similarity=0.374  Sum_probs=49.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHhH-
Q 015739          223 MVSNRESARRSRKRKQAHMQELELQVERLKG------------------------ENATLYKQFTDAAQQYKEANTNNR-  277 (401)
Q Consensus       223 ~lsNRESARRSR~RKk~~L~eLE~qV~~Le~------------------------EN~~L~~qL~~L~qq~~~l~~ENr-  277 (401)
                      .++|.+.--+--..++.+|.+||.++..++.                        +|..|+.+|..++..|..+.++|. 
T Consensus       106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~e  185 (617)
T PF15070_consen  106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENME  185 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3445554444444677788888876665543                        467889999999999999999984 


Q ss_pred             -------------HHHHHHHHHHHHHHHHHhHh
Q 015739          278 -------------VLKSDVEALRAKVRLAEDVV  297 (401)
Q Consensus       278 -------------~LKaqve~Lrakvk~aE~lv  297 (401)
                                   .|..++..|+.++......|
T Consensus       186 lt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~l  218 (617)
T PF15070_consen  186 LTSALQSEQHVKKELQKKLGELQEKLHNLKEKL  218 (617)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         44455555555554444443

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=89.11  E-value=1.6  Score=32.60  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739          257 TLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       257 ~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      +|.+....|+..|..|..+|..|+.+.+.|+++|..+...
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k   41 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK   41 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4667788899999999999999999999999988766543

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=89.09  E-value=2.3  Score=41.97  Aligned_cols=61  Identities=13%  Similarity=0.162  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      +|.+..+.....++.....=+.+..++.++...|+.||..||.+|+.|++.+....+++..
T Consensus       194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~  254 (269)
T KOG3119|consen  194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ  254 (269)
T ss_pred             HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444444556667777788888888888888888887766665444

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=88.90  E-value=2.1  Score=44.41  Aligned_cols=54  Identities=20%  Similarity=0.278  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          233 SRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       233 SR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      -=.|-+.+...||.-|.+++.||..|..+|..+.+++.+.+.|++.|..++.+-
T Consensus       121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            445677788889999999999999999999999999999999999886665443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=88.88  E-value=3.9  Score=43.92  Aligned_cols=53  Identities=26%  Similarity=0.332  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEAN-TNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~-~ENr~LKaqve~Lrakvk~a  293 (401)
                      +..|+.+-+.|+.||++|+++...+.+++.... .+..+|..+.+.|..+++.+
T Consensus        75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~  128 (472)
T TIGR03752        75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL  128 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            577888888888999999888887777775443 55555555555555554444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=88.78  E-value=0.91  Score=45.03  Aligned_cols=45  Identities=24%  Similarity=0.223  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      .+.+|+.||++|++++..++++....   ...|++|.++||+-+.+.+
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~---~~~l~~EN~rLr~LL~~~~  111 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEIL---TQNLKQENVRLRELLNSPL  111 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcc
Confidence            45567788888888877664444332   2235555555555554443

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.63  E-value=6.8  Score=37.73  Aligned_cols=44  Identities=20%  Similarity=0.235  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015739          236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVL  279 (401)
Q Consensus       236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~L  279 (401)
                      .-++.+..|+.+++.|+..|..|.+.+...++++..+..+-..+
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555544444333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.59  E-value=3.3  Score=38.53  Aligned_cols=39  Identities=31%  Similarity=0.501  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739          249 ERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR  287 (401)
Q Consensus       249 ~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr  287 (401)
                      ..|+.++..|..++..+...+......|..|+.++..|+
T Consensus       119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~  157 (194)
T PF08614_consen  119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ  157 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=88.03  E-value=2.2  Score=37.77  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEA--LRAKV  290 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~--Lrakv  290 (401)
                      ..+.+||.++..|-.|...|++.+..+-++...|.-||..||.++..  +....
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~   61 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTA   61 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence            46889999999999999999999999999999999999999999887  54443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=87.95  E-value=2.6  Score=38.17  Aligned_cols=47  Identities=26%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFT--DAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~--~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      .+.+|+.++..|+.|-..|...++  +|..++..+..|+..|..+++.|
T Consensus        87 el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l  135 (169)
T PF07106_consen   87 ELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL  135 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444544444444444442  23333444444444444444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.75  E-value=12  Score=36.12  Aligned_cols=44  Identities=18%  Similarity=0.165  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      +|..++..|+.|.+.|...+..++........+=..|+.+++.+
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444443333333344433333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=87.63  E-value=8.1  Score=34.07  Aligned_cols=55  Identities=16%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEA  272 (401)
Q Consensus       218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l  272 (401)
                      -+++-+..-.|..+-|+..=...-++|+..+..|+.++..+.+++..|+.++..+
T Consensus        16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea   70 (107)
T PF09304_consen   16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA   70 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566667777777777666677777777777777777777777776666544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK11637 AmiB activator; Provisional

Probab=87.35  E-value=13  Score=38.43  Aligned_cols=67  Identities=13%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739          223 MVSNRESARRSRKRKQAHMQELELQVERLKGENAT-------LYKQFTDAAQQYKEANTNNRVLKSDVEALRAK  289 (401)
Q Consensus       223 ~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~-------L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak  289 (401)
                      +...+......+.+.+..+.+++.+...|+.+-.+       |..++.....++..+..+-..|...+.+|.++
T Consensus       182 L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~  255 (428)
T PRK11637        182 LAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAERE  255 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555565555555554444       44444444555556666666666666665543

>PHA02562 46 endonuclease subunit; Provisional

Probab=86.98  E-value=10  Score=39.66  Aligned_cols=43  Identities=9%  Similarity=0.163  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV  283 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv  283 (401)
                      ...|+.++..|+.+...+..++..+..++..+..+-..+..+.
T Consensus       360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~  402 (562)
T PHA02562        360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK  402 (562)
T ss_pred             HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555555555555554443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=86.95  E-value=4.5  Score=39.70  Aligned_cols=49  Identities=12%  Similarity=0.226  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      -+.+|..|++.|+.|..+|+-+++.++.++..+....+.|..++..+..
T Consensus        55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~  103 (263)
T PRK10803         55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS  103 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999998889999988887643

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.92  E-value=7.6  Score=34.50  Aligned_cols=16  Identities=25%  Similarity=0.459  Sum_probs=9.3

Q ss_pred             HHHhHHHHHHHHHHHH
Q 015739          273 NTNNRVLKSDVEALRA  288 (401)
Q Consensus       273 ~~ENr~LKaqve~Lra  288 (401)
                      ..++.+|+.++..|+.
T Consensus        95 ~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   95 SEEVEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4556666666666554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK09039 hypothetical protein; Validated

Probab=86.63  E-value=8.5  Score=39.27  Aligned_cols=52  Identities=19%  Similarity=0.256  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      .+...+|..|+.|.+.|+.|+..++..+..++.+.+..+.+++.|++++..+
T Consensus       133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444678888888888999999999999999999999999999998877655

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.48  E-value=6.1  Score=39.59  Aligned_cols=55  Identities=15%  Similarity=0.271  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      ...+.+|+..+..++.+...|..++..+..+...+..++..+++++..|..++..
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~   91 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE   91 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555555555555555555544444444444433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=86.27  E-value=7.2  Score=32.71  Aligned_cols=53  Identities=11%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRV-------LKSDVEALRAKVR  291 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~-------LKaqve~Lrakvk  291 (401)
                      +-++.||.+|.+.-....-|..++..|+++...+..++..       |..+.+.|++...
T Consensus         4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~   63 (79)
T PRK15422          4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN   63 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3578899999887777777777777777777777666666       5555555554443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=86.22  E-value=6  Score=37.07  Aligned_cols=55  Identities=22%  Similarity=0.300  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      ..|+.+.+.|+.|+..|..++..|..++..+..+...++.+.+.|-.-+..+..|
T Consensus       100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl  154 (161)
T TIGR02894       100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL  154 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555555555555555555555555444444443

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.16  E-value=6.5  Score=39.08  Aligned_cols=47  Identities=21%  Similarity=0.316  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR  287 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr  287 (401)
                      ++++..+-..|..++..|..++..++.++..+..||..|......|-
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~  190 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            34444444444455555555555555555666666666655444443

>PRK04406 hypothetical protein; Provisional

Probab=86.03  E-value=6.8  Score=32.09  Aligned_cols=48  Identities=13%  Similarity=0.160  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      +++.+||.++..++.-...|...+...++++       ..|+.++..|..+++.+
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I-------~~L~~ql~~L~~rl~~~   58 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLI-------TKMQDQMKYVVGKVKNM   58 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence            3566666666666666666665555443333       56666777776666543

>PRK02119 hypothetical protein; Provisional

Probab=85.94  E-value=6.5  Score=31.95  Aligned_cols=48  Identities=10%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      .+++.+||.++..++.-...|...+...++++       ..|+.++..|..+++.
T Consensus         8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl~~   55 (73)
T PRK02119          8 ENRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKLKD   55 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence            34677777777777777777766666554444       5566666666666544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=85.80  E-value=26  Score=32.04  Aligned_cols=66  Identities=20%  Similarity=0.235  Sum_probs=33.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ....|++.+-+--.-+++.+..|+.++..+..+...|..+|..+       ..|+..|-..++..+.+|.-++
T Consensus        35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l-------~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTL-------RSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555556666655555555555554444433       3444444444444444444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK02119 hypothetical protein; Provisional

Probab=85.79  E-value=5  Score=32.63  Aligned_cols=52  Identities=13%  Similarity=0.127  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      +..||.++..|+....-+...+..|+.-.       .....++..|+++++.+.+-+..
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v-------~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEELNQAL-------IEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            56788888888877766666665553222       22344568888888777555444

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=85.79  E-value=4.6  Score=32.63  Aligned_cols=48  Identities=27%  Similarity=0.410  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      +.-.+.....|..|+.....++..+-..+..|..||..|+.+++.++.
T Consensus        21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~   68 (69)
T PF14197_consen   21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA   68 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            455556777888888888888888888888888888888888887764

>PRK09039 hypothetical protein; Validated

Probab=85.71  E-value=5.2  Score=40.83  Aligned_cols=50  Identities=16%  Similarity=0.195  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      ....+.-|..||+.|+.+...|..+|..++++......+=..|+.+++.+
T Consensus       135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555544444444444444444

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=85.31  E-value=6.4  Score=39.75  Aligned_cols=60  Identities=18%  Similarity=0.366  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      .|+.+..++..|+.||..+..+.......+..+..|...+..+++.++.++..++.+|..
T Consensus       245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa  304 (309)
T PF09728_consen  245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA  304 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677888999999999999999999999999999999999999999999999998754

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>smart00340 HALZ homeobox associated leucin zipper

Probab=85.26  E-value=1.9  Score=32.34  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739          262 FTDAAQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       262 L~~L~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      ...|++.+..|..||+.|+.++++||+
T Consensus         7 Ce~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        7 CELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345778888999999999999999975

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.07  E-value=5.2  Score=40.87  Aligned_cols=58  Identities=24%  Similarity=0.389  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      ..|..++..|+.+|..|+.++...+.++..|..+|+.||.....+.+++..-|..|..
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN   80 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISN   80 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666666666666666666666666666666666666655555433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=85.06  E-value=12  Score=41.06  Aligned_cols=42  Identities=14%  Similarity=0.166  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739          256 ATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV  297 (401)
Q Consensus       256 ~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv  297 (401)
                      .+|+..+..++.....+..|++.|+..+..|++++.+.-+-.
T Consensus       420 ~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~  461 (546)
T PF07888_consen  420 QELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEK  461 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            366776777777778899999999999999999998875543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=84.94  E-value=6  Score=38.01  Aligned_cols=51  Identities=22%  Similarity=0.261  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      +|=..|+.|+.-|.+|..+...|+.....+...|..|..++..|+.+++..
T Consensus         5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~   55 (193)
T PF14662_consen    5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL   55 (193)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444445555555555555555555554444

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=84.76  E-value=22  Score=33.77  Aligned_cols=47  Identities=19%  Similarity=0.290  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739          235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS  281 (401)
Q Consensus       235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa  281 (401)
                      ...+..+..++.++..|+.+.+.+++++...++++..+..++...+.
T Consensus        59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~  105 (302)
T PF10186_consen   59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS  105 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555555555555555555555555555444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.29  E-value=18  Score=36.57  Aligned_cols=65  Identities=17%  Similarity=0.303  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          230 ARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       230 ARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ..+-+..=.+.+.+|+.+...|+.+-..+.+....++.++..+..+...|+.+++.++.++..++
T Consensus        69 LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen   69 LEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444556666666666666666666666666666666667777777776666655444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=84.27  E-value=19  Score=34.21  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739          233 SRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR  291 (401)
Q Consensus       233 SR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk  291 (401)
                      .+.++...+.+||.++-.|+.+...+..+.......+..+..+-..|++++...+.+.+
T Consensus       125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677888888999999888888888888888999999999999999999877654

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=84.16  E-value=3.1  Score=35.79  Aligned_cols=23  Identities=17%  Similarity=0.315  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHH
Q 015739          266 AQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       266 ~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      +++...+..+|..|+.+++.|+.
T Consensus        40 ~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         40 QQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhC
Confidence            33333344445555555555544

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=83.98  E-value=4.9  Score=39.56  Aligned_cols=41  Identities=17%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      ++..|||.++.+++.+...|+.++.       .|.++|-.|-+++..|
T Consensus        93 ~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKiRyl  133 (248)
T PF08172_consen   93 QRNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKIRYL  133 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            3457788777777776666665553       4556666666655444

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=83.89  E-value=27  Score=31.11  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHhHhh
Q 015739          281 SDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       281 aqve~Lrakvk~aE~lv~  298 (401)
                      .++++|+..|....+|++
T Consensus        96 E~veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   96 EEVEELRADVQDLKEMYR  113 (120)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            356666666666665544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=83.81  E-value=7.5  Score=38.62  Aligned_cols=57  Identities=19%  Similarity=0.344  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ++...++..+++.+..|+..|.++++.++.++..+...=+.|+.+...|..+++.+.
T Consensus       134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~  190 (290)
T COG4026         134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            344566677777777777777777777777777776666666666666666665554

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=83.79  E-value=7.4  Score=37.71  Aligned_cols=42  Identities=24%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          247 QVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       247 qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      ....|+.||.+|++++..|+.+...+    +.|++|.++|++.+.+
T Consensus        70 ~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL~~  111 (276)
T PRK13922         70 SLFDLREENEELKKELLELESRLQEL----EQLEAENARLRELLNL  111 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence            33445555555555555554443322    3455555555554443

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=83.76  E-value=3.7  Score=40.00  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739          250 RLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV  283 (401)
Q Consensus       250 ~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv  283 (401)
                      .++.+...|.+|.+.++.+|..+..||..|+.++
T Consensus       176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444444444443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.53  E-value=8.7  Score=38.64  Aligned_cols=60  Identities=17%  Similarity=0.235  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~  298 (401)
                      .+|..|..++..+..+...+++++..++.++..+..+-..+.++...|+.+++.++..+.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555666666666555566666666666666666666666666666655555443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=83.37  E-value=8.7  Score=42.27  Aligned_cols=63  Identities=16%  Similarity=0.269  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739          236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~  298 (401)
                      +.++.+.+|+.+|+.|+.+...+..++..+..++..+..+....+.+.++|.++++..+.++.
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~  387 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVE  387 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345557777777777777777777777777777777777777777777777777777665543

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=83.23  E-value=6.8  Score=33.20  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHH
Q 015739          251 LKGENATLYKQFTDAAQ------QYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       251 Le~EN~~L~~qL~~L~q------q~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      +..+|..|..++..|+.      +......||..|+.++..|+.-.
T Consensus        22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~   67 (86)
T PF12711_consen   22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY   67 (86)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555443      44667889999999999987644

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=83.20  E-value=8.4  Score=39.09  Aligned_cols=86  Identities=15%  Similarity=0.305  Sum_probs=59.7

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      +.++|=.|=|+.|-+== --|..=.-+++-|..++..|+.....|.+++......+..+......|+.++..|+.+|+.+
T Consensus        88 evEekyrkAMv~naQLD-Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r  166 (302)
T PF09738_consen   88 EVEEKYRKAMVSNAQLD-NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR  166 (302)
T ss_pred             HHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777788883210 01112223456667777777777777777777666677777777888999999999999999


Q ss_pred             HhHhhhc
Q 015739          294 EDVVSVG  300 (401)
Q Consensus       294 E~lv~~~  300 (401)
                      ++++.-.
T Consensus       167 deli~kh  173 (302)
T PF09738_consen  167 DELIEKH  173 (302)
T ss_pred             HHHHHHC
Confidence            9888774

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=83.12  E-value=8.7  Score=38.87  Aligned_cols=59  Identities=25%  Similarity=0.403  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~  298 (401)
                      .+.+.+.++...+.+-..|..++..|+.+|.....+...|+.+++....++..++.|+.
T Consensus       229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~  287 (344)
T PF12777_consen  229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLIS  287 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHh
Confidence            34555556666666666677777777777777778888888888888888888887743

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=83.00  E-value=13  Score=31.97  Aligned_cols=48  Identities=13%  Similarity=0.212  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          245 ELQVERLKGENATL--YKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       245 E~qV~~Le~EN~~L--~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      +.++..++.+-..|  +..+..|+-....+.-+=+.|.+++..+.+++.+
T Consensus        48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l   97 (106)
T PF10805_consen   48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL   97 (106)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333333333333  3333333333333333335555555555555444

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.90  E-value=5.2  Score=36.29  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      ++|..++..|+.|+..|..+|..++
T Consensus       112 ~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen  112 EELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555444444444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF15058 Speriolin_N: Speriolin N terminus

Probab=82.76  E-value=2.2  Score=41.04  Aligned_cols=33  Identities=39%  Similarity=0.355  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSD  282 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaq  282 (401)
                      +.|..|++.|-.||++|++++..        ..||.+||.-
T Consensus         8 eGlrhqierLv~ENeeLKKlVrL--------irEN~eLksa   40 (200)
T PF15058_consen    8 EGLRHQIERLVRENEELKKLVRL--------IRENHELKSA   40 (200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHH
Confidence            56788899999999999988864        4577887764

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=82.60  E-value=8.1  Score=35.40  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 015739          237 KQAHMQELELQVERLKG---ENATLYKQFTDAAQQ  268 (401)
Q Consensus       237 Kk~~L~eLE~qV~~Le~---EN~~L~~qL~~L~qq  268 (401)
                      .+.+|.+...++..|+.   .|..|..++..|+.+
T Consensus        32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~   66 (155)
T PF06810_consen   32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAK   66 (155)
T ss_pred             HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            33344444444444444   344444444444333

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PRK04325 hypothetical protein; Provisional

Probab=82.58  E-value=9.5  Score=31.04  Aligned_cols=48  Identities=21%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      ++|.+||.++..++.-...|...+...++++       ..|+.++..|..+++..
T Consensus         9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          9 DRITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence            3488888888888888777777776554444       45666666666666543

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=82.50  E-value=15  Score=37.58  Aligned_cols=73  Identities=15%  Similarity=0.208  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          227 RESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       227 RESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      -|+++|-....+.++.++|.....-+..-.....+-..+.+++.++..||-.|+++++....|+...|.+|.-
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vin  253 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVIN  253 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4788888888899999999888777777777777778889999999999999999999999988777755443

>smart00338 BRLZ basic region leucin zipper

Probab=82.49  E-value=5.3  Score=30.86  Aligned_cols=36  Identities=17%  Similarity=0.339  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739          261 QFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       261 qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      .+..|..+...|..+|..|+.++..|+.++..+...
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~   62 (65)
T smart00338       27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666677777777777777766655543

>PRK02793 phi X174 lysis protein; Provisional

Probab=82.45  E-value=8.6  Score=31.14  Aligned_cols=49  Identities=18%  Similarity=0.201  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ++|.+||.++..++.-...|...+...++++       ..|+.++..|..+++.++
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~   56 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKASQ   56 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Confidence            5678888888888877777777666554444       556666666666665433

>PRK00295 hypothetical protein; Provisional

Probab=82.42  E-value=11  Score=30.22  Aligned_cols=49  Identities=14%  Similarity=0.097  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      +++.+||.++..++.-...|...+...++++       ..|+.++..|..+++..+
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I-------~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVI-------ERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence            3589999999998888888887776555444       556667777766665443

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=82.31  E-value=20  Score=29.17  Aligned_cols=58  Identities=19%  Similarity=0.270  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED  295 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~  295 (401)
                      .+.|..|-.+-+.|....-.+...+..|+.+...+..+...|+.+++.+..++..+++
T Consensus        11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~   68 (74)
T PF12329_consen   11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE   68 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333344444444444444444444455555554444444443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=82.30  E-value=29  Score=29.24  Aligned_cols=69  Identities=14%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739          221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK  289 (401)
Q Consensus       221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak  289 (401)
                      .++...++..+..=..|+..+..||.++..|..|-..-..+.-.+.+....+..|++.|+..+..=+.-
T Consensus         6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~   74 (96)
T PF08647_consen    6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSEL   74 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence            356666777777778888889999999999999999999999999999999999999999877654433

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=82.27  E-value=27  Score=29.24  Aligned_cols=72  Identities=19%  Similarity=0.328  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHHHHHH
Q 015739          226 NRESARRSRKRKQ------AHMQELELQVERLKGENATLYKQFTDAAQQY----------KEANTNNRVLKSDVEALRAK  289 (401)
Q Consensus       226 NRESARRSR~RKk------~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~----------~~l~~ENr~LKaqve~Lrak  289 (401)
                      |.+..+.+-++|.      ..+-+|..+...|..+-..|+.+-..+..++          ..+..+=+.|+.++..|..+
T Consensus        10 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~   89 (108)
T PF02403_consen   10 NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ   89 (108)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555544442      2334444444444444444444444444443          44555666666666666666


Q ss_pred             HHHHHhHh
Q 015739          290 VRLAEDVV  297 (401)
Q Consensus       290 vk~aE~lv  297 (401)
                      +..++.-+
T Consensus        90 ~~~~e~~l   97 (108)
T PF02403_consen   90 LKELEEEL   97 (108)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=82.26  E-value=25  Score=35.47  Aligned_cols=55  Identities=16%  Similarity=0.312  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      +..++.++.++.+.+.+-..++.++.....++..+..+-..|...+..+..||+-
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k  260 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK  260 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666667777777777777777777777777777777777777777666653

>PF15294 Leu_zip: Leucine zipper

Probab=82.19  E-value=4.8  Score=40.57  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739          244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      |..++..|+.||..|+.++..++.++..+..|+..|..++..|+.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666777777777777777776666677777766666655

>PHA03162 hypothetical protein; Provisional

Probab=82.08  E-value=4.1  Score=37.13  Aligned_cols=29  Identities=28%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          235 KRKQAHMQELELQVERLKGENATLYKQFT  263 (401)
Q Consensus       235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~  263 (401)
                      -+|+.-+++|+.++.+|+-||..|++++.
T Consensus         9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~   37 (135)
T PHA03162          9 PKAQPTMEDLAAEIAKLQLENKALKKKIK   37 (135)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667799999999999999999999994

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=82.06  E-value=11  Score=31.60  Aligned_cols=58  Identities=22%  Similarity=0.269  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          236 RKQAHMQELELQ-VERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       236 RKk~~L~eLE~q-V~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      |...-++.++.+ -+.|..+...|...|..|..++..+..||..|+.+-+.|+.-+.-+
T Consensus         5 ~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen    5 RNSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555553 6778888889999999999999999999999999999998765433

The exact function is unknown.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=82.02  E-value=0.27  Score=50.78  Aligned_cols=46  Identities=35%  Similarity=0.458  Sum_probs=39.4

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLY  259 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~  259 (401)
                      ..++++.|=.++||.+|-|+|.|||..+..|+.+...+..+|..|.
T Consensus       281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            3455665558999999999999999999999999999998887776

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.00  E-value=18  Score=41.60  Aligned_cols=29  Identities=17%  Similarity=0.232  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          266 AQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       266 ~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ++.+..+...+..|..++++|.-|++.++
T Consensus       429 qe~iv~~nak~~ql~~eletLn~k~qqls  457 (1118)
T KOG1029|consen  429 QEWIVYLNAKKKQLQQELETLNFKLQQLS  457 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344455566667777777777776665

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=82.00  E-value=18  Score=34.86  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739          244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV  283 (401)
Q Consensus       244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv  283 (401)
                      |..+|..|+.||..|..+..-++.++..|..++..|+.++
T Consensus       100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen  100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            3444444444444444444444444444444444444444

>PRK02793 phi X174 lysis protein; Provisional

Probab=81.94  E-value=11  Score=30.45  Aligned_cols=51  Identities=16%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      .+||.++..|+....-+..-+..|++-.       .....++..|+++++.+.+-+..
T Consensus         4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v-------~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          4 SSLEARLAELESRLAFQEITIEELNVTV-------TAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            3578888888877766666555543222       22344568888888877554443

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=81.81  E-value=15  Score=40.90  Aligned_cols=53  Identities=15%  Similarity=0.282  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      ...|.+||.+-+.|..|.+++..+++++++.+.....|=..||-+++.-+.++
T Consensus        92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~  144 (907)
T KOG2264|consen   92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL  144 (907)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence            35688999999999999999999999999999888888889999998865544

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=81.74  E-value=36  Score=32.84  Aligned_cols=78  Identities=12%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739          221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~  298 (401)
                      -++..-.+-..|.-..-++++..|...+..-+.+-.....+-..+.++...|..|.+.++.++..|+++|..++....
T Consensus       108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~  185 (192)
T PF11180_consen  108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN  185 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346666667777777777888888888888887777777777788888899999999999999999999988875543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.60  E-value=14  Score=33.38  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          237 KQAHMQELELQVERLKGENATLYKQFTDAAQQY  269 (401)
Q Consensus       237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~  269 (401)
                      |-..|..|..++..|+.+...|..+|..+...+
T Consensus        33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l   65 (143)
T PF12718_consen   33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL   65 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455555555555555555555555444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=81.51  E-value=14  Score=31.69  Aligned_cols=58  Identities=10%  Similarity=0.210  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDA--AQQYKEANTNNRVLKSDVEALRAKVRLAED  295 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L--~qq~~~l~~ENr~LKaqve~Lrakvk~aE~  295 (401)
                      ++.++.|+.++......-..|..++..+  .+.++.|..+=..++-++..|+++++-.+.
T Consensus        34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~   93 (106)
T PF10805_consen   34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH   93 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4445556666665555555555555555  555555555555555555555555544443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PHA03155 hypothetical protein; Provisional

Probab=81.45  E-value=9.7  Score=33.97  Aligned_cols=25  Identities=36%  Similarity=0.523  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTD  264 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~  264 (401)
                      -+++|+.++..|+-||..|++++..
T Consensus         9 tvEeLaaeL~kL~~ENK~LKkkl~~   33 (115)
T PHA03155          9 DVEELEKELQKLKIENKALKKKLLQ   33 (115)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4799999999999999999999854

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=81.44  E-value=39  Score=33.49  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      ..|+.++..++.+-..|..++..+...+..+..+=..|+.++..++..+..+
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~  143 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA  143 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444333

>PRK00846 hypothetical protein; Provisional

Probab=81.39  E-value=13  Score=31.00  Aligned_cols=49  Identities=16%  Similarity=0.116  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ++|.+||.++...+.-...|...+...+       .+-..|+.++..|..|++..+
T Consensus        13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq-------~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         13 ARLVELETRLSFQEQALTELSEALADAR-------LTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence            5677777777776666666666555433       334667777888877776555

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=81.37  E-value=4.7  Score=31.27  Aligned_cols=50  Identities=24%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739          236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      |++.+|.|||.++..-+ |...+  .-....+.+..+..||+.|+++++.++.
T Consensus         1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46677888887776533 21111  2234567778889999999999988753

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.22  E-value=15  Score=33.15  Aligned_cols=28  Identities=18%  Similarity=0.322  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQY  269 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~  269 (401)
                      ..+|.+|..|...|..|..+|..+..++
T Consensus        31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l   58 (143)
T PF12718_consen   31 EQKEQEITSLQKKNQQLEEELDKLEEQL   58 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=80.99  E-value=14  Score=33.04  Aligned_cols=28  Identities=32%  Similarity=0.504  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          237 KQAHMQELELQVERLKGENATLYKQFTD  264 (401)
Q Consensus       237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~  264 (401)
                      |..-+++|..++.+|+-||..|++++..
T Consensus         1 k~~t~EeLaaeL~kLqmENk~LKkkl~~   28 (118)
T PF05812_consen    1 KDMTMEELAAELQKLQMENKALKKKLRQ   28 (118)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566899999999999999999999875

; PDB: 2OA5_B 2H3R_D.

>PRK04325 hypothetical protein; Provisional

Probab=80.97  E-value=11  Score=30.66  Aligned_cols=53  Identities=17%  Similarity=0.138  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      ++..++.++..|+....-+...+..|..-.       .....++..|+++++++.+-+..
T Consensus         3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv-------~~Qq~~I~~L~~ql~~L~~rl~~   55 (74)
T PRK04325          3 AVQEMEDRITELEIQLAFQEDLIDGLNATV-------ARQQQTLDLLQAQLRLLYQQMRD   55 (74)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678888888776666665555443222       22334568888888777544433

>TIGR02977 phageshock_pspA phage shock protein A

Probab=80.86  E-value=22  Score=33.78  Aligned_cols=57  Identities=16%  Similarity=0.221  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      .+.+..|+.++..++.....|..++..|++++..+...-..|++++...+++.++.+
T Consensus        98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~  154 (219)
T TIGR02977        98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRR  154 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777777777777777777777777776666667766666666555444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=80.49  E-value=9.5  Score=35.15  Aligned_cols=49  Identities=24%  Similarity=0.392  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDA-AQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L-~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      .+||...-.++....+|+.++..+ +.++..+..++..|+.+++.|++++
T Consensus        47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L   96 (177)
T PF07798_consen   47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL   96 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555443 3445555666666666666665554

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=80.45  E-value=12  Score=35.27  Aligned_cols=60  Identities=23%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      +|++=..+.+.|..-|.-|+.++.........|..+...|..+...|+.++...|.....
T Consensus        68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~  127 (182)
T PF15035_consen   68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE  127 (182)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555566777777777888888777777777888888888888888888777765444

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=80.34  E-value=11  Score=30.00  Aligned_cols=52  Identities=21%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      .||.++..|+....-+...+..|++....-..+=..|+.++..|..|++..+
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4788999999988888888888877776666666667777777766665443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=80.30  E-value=22  Score=35.39  Aligned_cols=26  Identities=15%  Similarity=0.185  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhccc
Q 015739          277 RVLKSDVEALRAKVRLAEDVVSVGSL  302 (401)
Q Consensus       277 r~LKaqve~Lrakvk~aE~lv~~~~~  302 (401)
                      ..++.++..++.++..++..+....+
T Consensus       249 ~~~~~~l~~~~~~l~~~~~~l~~~~i  274 (423)
T TIGR01843       249 TEAQARLAELRERLNKARDRLQRLII  274 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcEE
Confidence            34555666666666666554444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=80.13  E-value=20  Score=38.17  Aligned_cols=17  Identities=18%  Similarity=0.397  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENA  256 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~  256 (401)
                      +|.+||.++..++.+..
T Consensus        67 ~lk~~e~~i~~~~~ql~   83 (420)
T COG4942          67 QLKSLETEIASLEAQLI   83 (420)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444433333

>KOG3564 consensus GTPase-activating protein [General function prediction only]

Probab=80.11  E-value=15  Score=40.08  Aligned_cols=85  Identities=16%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      +.+--|++|+...   -..+.+|-.+.+.+.+..+..-+.+-..|--+|...+.+......+|+.++.+.+.|+.+.++.
T Consensus        27 e~ef~rl~k~fed---~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i  103 (604)
T KOG3564|consen   27 EDEFIRLRKDFED---FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI  103 (604)
T ss_pred             HHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4555566665543   2334445555566667777777888888889999999999999999999999999999999999


Q ss_pred             HhHhhhcc
Q 015739          294 EDVVSVGS  301 (401)
Q Consensus       294 E~lv~~~~  301 (401)
                      .+|++-+-
T Consensus       104 ~d~l~~~~  111 (604)
T KOG3564|consen  104 KDMLKCDI  111 (604)
T ss_pred             HHHHhccc
Confidence            99987653

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.05  E-value=46  Score=33.72  Aligned_cols=78  Identities=17%  Similarity=0.176  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHhHhhhcccccccc
Q 015739          235 KRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLK-------SDVEALRAKVRLAEDVVSVGSLTCGLN  307 (401)
Q Consensus       235 ~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LK-------aqve~Lrakvk~aE~lv~~~~~t~~~n  307 (401)
                      .+..+.+.+||.+.+.|..|...|..+...+.++-...-.+...++       .+...|..++....+.+.+-.-+-++|
T Consensus        60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n  139 (314)
T PF04111_consen   60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYN  139 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            3444555566665555555555555555555444333333333333       444455555444444444433334455


Q ss_pred             ccccc
Q 015739          308 QLLQS  312 (401)
Q Consensus       308 ~l~~~  312 (401)
                      ..|++
T Consensus       140 ~~F~I  144 (314)
T PF04111_consen  140 DTFHI  144 (314)
T ss_dssp             TT--E
T ss_pred             ceeeE
Confidence            55543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK04406 hypothetical protein; Provisional

Probab=80.03  E-value=12  Score=30.66  Aligned_cols=52  Identities=10%  Similarity=0.133  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      ++.|+.++..|+....-+...+..|++-.       .....++..|+++++++.+-+..
T Consensus         6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v-------~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          6 IEQLEERINDLECQLAFQEQTIEELNDAL-------SQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            45688888888887777666665554322       22344568888888877554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	1e-16
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	8e-13
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	1e-12
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	4e-12
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	7e-11
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	7e-10
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	8e-10
2wt7_B	90	Transcription factor MAFB; transcription, transcri	2e-09
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	7e-09
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	8e-07
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	2e-06

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 72.4 bits (178), Expect = 1e-16
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYK 270
           KR  R++ NRE+AR SR++K+ +++ LE +V  L+ +N TL ++       Y 
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 62.0 bits (151), Expect = 8e-13
 Identities = 12/48 (25%), Positives = 29/48 (60%)

Query: 217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD 264
           +K++++M  N+ +A R R++K+A  + L  + + L+ +N  L ++   
Sbjct: 1   MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS 48

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNR 277
           KR + +  NR +A RSR++++  +Q LE + E L   N  L  + T    +         
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE-------VA 53

Query: 278 VLKSDVEA 285
            LK  + A
Sbjct: 54  QLKQLLLA 61

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 60.2 bits (146), Expect = 4e-12
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 208 EQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261
            +S+D P  LKR R    N E+ARRSR RK   M++LE +VE L  +N  L  +
Sbjct: 4   PESSD-PAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENE 52

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261
           K  R+ + NR +A +SRKRK   +  LE +V+ LK +N+ L   
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELAST 44

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 55.1 bits (132), Expect = 7e-10
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 210 STDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269
           S +  I LK+ RR + NR  A   R ++    +ELE Q   L+ E   L  +      + 
Sbjct: 29  SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLEL 88

Query: 270 KEANTNNRVLKSDVEALRAKVR 291
                    L+S  EAL+   R
Sbjct: 89  DA-------LRSKYEALQNFAR 103

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 53.6 bits (129), Expect = 8e-10
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD 264
           KR  R   N+ +A + R R++     L+ + ++L+ E + L  +  +
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN 48

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 210 STDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY 269
           + D  I LK+ RR + NR  A+  R ++      LE +  +L  +   L ++ +  A++ 
Sbjct: 19  TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER 78

Query: 270 KEANTNNRVLKSDVEAL 286
                     K   E L
Sbjct: 79  DA-------YKVKSEKL 88

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 51.2 bits (122), Expect = 7e-09
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 216 DLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTN 275
                +R   NR + R  RKRK+ H++ LE QV  LK  +++   +     Q+ ++    
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 276 NRVLK 280
            R+LK
Sbjct: 66  LRILK 70

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 45.7 bits (108), Expect = 8e-07
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 208 EQSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261
           +++ D   D  +IRR   N  + R+SR + +    E + +V  L  EN  L K+
Sbjct: 6   KKTVDKHSDEYKIRRE-RNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 209 QSTDHPIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQ 261
           ++ D   D  +IRR   N  + R+SR + +    E + +V  L  EN  L K+
Sbjct: 7   KTVDKHSDEYKIRRE-RNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.5
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.29
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.22
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.16
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.13
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.9
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.86
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.45
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.45
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.39
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.17
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	96.95
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.3
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.56
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	95.25
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.95
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.98
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	93.61
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.02
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	92.81
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.44
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.81
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.77
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	91.35
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	91.34
3m0d_C	65	TNF receptor-associated factor 1; trimeric helix c	90.79
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	90.48
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	90.4
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	90.33
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	89.82
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	89.53
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	89.43
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	89.03
3m48_A	33	General control protein GCN4; leucine zipper, synt	88.92
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	88.9
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	88.75
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	88.7
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	88.65
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	88.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.37
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.24
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	87.98
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	87.97
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	87.67
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	87.57
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	87.53
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	87.51
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	87.25
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	86.62
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.33
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	86.09
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	85.91
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	85.77
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	85.12
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	84.97
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	84.83
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	84.02
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	83.82
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	83.77
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	83.34
2bni_A	34	General control protein GCN4; four helix bundle, a	83.02
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	82.79
1uo4_A	34	General control protein GCN4; four helix bundle, c	82.77
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	82.5
3bas_A	89	Myosin heavy chain, striated muscle/general contro	82.49
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	82.39
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	82.15
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	82.15
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	82.05
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	82.01
2hy6_A	34	General control protein GCN4; protein design, para	82.0
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	81.83
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	81.78
2wvr_A	209	Geminin; DNA replication license, DNA replication	81.52
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	81.12
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	81.03
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	80.8
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	80.75
3m0a_A	66	TNF receptor-associated factor 2; TRAF2: CIAP2 and	80.69
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	80.65
2oa5_A	110	Hypothetical protein BQLF2; MHR28B, NESG, structur	80.37
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	80.15
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	80.01
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	80.01

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.50  E-value=2.5e-14  Score=108.23  Aligned_cols=52  Identities=37%  Similarity=0.548  Sum_probs=48.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY  269 (401)
Q Consensus       218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~  269 (401)
                      ||++|+++||+||++||.||++|+++||.+|..|+.||..|..++..|++.+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999999999999999998876554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.29  E-value=1e-11  Score=95.82  Aligned_cols=53  Identities=21%  Similarity=0.332  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          217 LKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY  269 (401)
Q Consensus       217 ~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~  269 (401)
                      +||.+|+++||++|+|||+||++++.+|+.+|..|+.+|..|..++..|..++
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~   53 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK   53 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999998886544433

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.22  E-value=4.4e-11  Score=91.43  Aligned_cols=50  Identities=32%  Similarity=0.397  Sum_probs=45.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQ  267 (401)
Q Consensus       218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~q  267 (401)
                      ||.+|+++||++|++||.||++|+.+||.+|..|+.+|..|..++..|..
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~   50 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999988865443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.16  E-value=4.5e-11  Score=92.65  Aligned_cols=48  Identities=35%  Similarity=0.421  Sum_probs=41.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQY  269 (401)
Q Consensus       222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~  269 (401)
                      ++.+||+||+|||+||++|+.+||.+|..|+.+|..|..++..|.+++
T Consensus        13 KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334599999999999999999999999999999988888887666544

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.13  E-value=1.1e-10  Score=89.58  Aligned_cols=50  Identities=34%  Similarity=0.404  Sum_probs=45.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQ  267 (401)
Q Consensus       218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~q  267 (401)
                      |+.||+.+||++|++||+||++++.+||.+|..|+.+|..|..++..|..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~   50 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE   50 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999988865443

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.90  E-value=4e-09  Score=83.57  Aligned_cols=58  Identities=34%  Similarity=0.472  Sum_probs=47.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739          220 IRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR  291 (401)
Q Consensus       220 ~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk  291 (401)
                      .||+..||.|+|..|.||++||.+||.+|..|+.++..|.              .||..|+.++..|+.++.
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~--------------~en~~Lr~~i~~L~~El~   67 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTT--------------LENDQLRQKVRQLEEELR   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999999998887654              556666666666666553

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.86  E-value=4.8e-09  Score=81.07  Aligned_cols=49  Identities=27%  Similarity=0.428  Sum_probs=40.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          218 KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       218 KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      |+.+++.+||.+|+|+|.||++++.+|+.+++.|+.+|..|..++..|+
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~   50 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLA   50 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999998886544

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.45  E-value=9.8e-07  Score=72.54  Aligned_cols=50  Identities=24%  Similarity=0.213  Sum_probs=43.7

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD  264 (401)
Q Consensus       215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~  264 (401)
                      .+++...|+.+|.++|+|||.++++...+++.+|..|+.||..|..++..
T Consensus        12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~   61 (87)
T 1hjb_A           12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ   61 (87)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667888999999999999999999999999999999998888854

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.45  E-value=1e-06  Score=71.12  Aligned_cols=52  Identities=23%  Similarity=0.204  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      .+++-..|+.+|.++|+|||.++++...+++.+|..|+.||..|..++..|.
T Consensus        12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~   63 (78)
T 1gu4_A           12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS   63 (78)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555678899999999999999999999999999999988888776443

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.39  E-value=1.3e-08  Score=86.68  Aligned_cols=64  Identities=34%  Similarity=0.441  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR  291 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk  291 (401)
                      ..+.|.+||.++||.+|++||.||.+++.+||.++..|..+.+.|.              .||..|+.++..|+.+++
T Consensus        33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~--------------~En~~l~~E~~~lk~k~e   96 (107)
T 3a5t_A           33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA--------------SENASMKLELDALRSKYE   96 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT--------------STTSHHHHTTTSSSSCC-
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999999999999999988877766655554              345555555555554443

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.17  E-value=1e-05  Score=66.95  Aligned_cols=51  Identities=25%  Similarity=0.324  Sum_probs=43.6

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTD  264 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~  264 (401)
                      ....|..||.++||.+|+-||.||.....+||.++..|..+...|..++..
T Consensus        23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~   73 (90)
T 2wt7_B           23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR   73 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999998887777777655543

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=96.95  E-value=0.0019  Score=46.71  Aligned_cols=39  Identities=26%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDV  283 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqv  283 (401)
                      |+|+.+||.+++.|+..|.+|..++.       .|..||..||+-+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHh
Confidence            68999999999999999988887776       4567888887644

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.30  E-value=0.0018  Score=53.71  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=28.3

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQAHMQELEL  246 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~  246 (401)
                      ....|..||+.+||.+|++||+||.+.+++|+.
T Consensus        58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            456788999999999999999999999888764

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.56  E-value=0.083  Score=46.28  Aligned_cols=60  Identities=17%  Similarity=0.222  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739          236 RKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED  295 (401)
Q Consensus       236 RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~  295 (401)
                      +.+...+.|+.+++.+..|...|+.++..++.++..+..++..|+.++..|+.++.-+|.
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344557888888888888888999999888888888888888888888888888877763

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=95.25  E-value=0.059  Score=40.51  Aligned_cols=47  Identities=28%  Similarity=0.365  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALR  287 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lr  287 (401)
                      -+.|-.||+.|+.||..|+++|.+-..++..|+.|-.-+|+-+..|+
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq   51 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence            36788999999999999999999999999999998888887666554

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.95  E-value=0.17  Score=41.10  Aligned_cols=51  Identities=24%  Similarity=0.418  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR  291 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk  291 (401)
                      +.-|..+|+.|+.+|..|..+...++.....+..||..|+.+....+.++.
T Consensus        22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A           22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666666666666666666666666677788888887777766654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.98  E-value=0.44  Score=38.75  Aligned_cols=53  Identities=11%  Similarity=0.134  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVR  291 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk  291 (401)
                      .-++.||.+|+++-....-|..++..|+++...+..+|..++...+.|+++..
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~   58 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENN   58 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            45788999999999988888888888888888888888886665555554443

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=93.61  E-value=0.26  Score=38.12  Aligned_cols=41  Identities=17%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS  281 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa  281 (401)
                      |..-|.+|++|..-|..|..++..++.+++.+..||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            55678899999999999999999999999999999999874

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.33  E-value=2  Score=35.47  Aligned_cols=63  Identities=17%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 015739          233 SRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED  295 (401)
Q Consensus       233 SR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~  295 (401)
                      .+.++-..+..|..++..|+.+-..+..+|....+++......-...-.++..|.++++++|+
T Consensus        38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE  100 (101)
T 3u1c_A           38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE  100 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            334444445555555555555555555555544444444333333334477777777777763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.02  E-value=0.62  Score=47.12  Aligned_cols=16  Identities=25%  Similarity=0.339  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 015739          277 RVLKSDVEALRAKVRL  292 (401)
Q Consensus       277 r~LKaqve~Lrakvk~  292 (401)
                      .+|+++++.++++++.
T Consensus       561 ~~l~~e~~~~~~~~~~  576 (597)
T 3oja_B          561 AELRQETSLKRQKVKQ  576 (597)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=92.81  E-value=0.39  Score=40.48  Aligned_cols=47  Identities=23%  Similarity=0.278  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYK-------QFTDAAQQYKEANTNNRVLKSDVEALRA  288 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~-------qL~~L~qq~~~l~~ENr~LKaqve~Lra  288 (401)
                      -+||.+++.|+.||..|+.       ++..|..++..|..||..|+.+-+-.++
T Consensus        40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~   93 (104)
T 3s9g_A           40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ   93 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4688999999888888877       5556666666666666666665555443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.44  E-value=1.1  Score=39.16  Aligned_cols=52  Identities=13%  Similarity=0.185  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      +.+++++.++..|+.+...+..++..+.+++..+..++..|..++..|++++
T Consensus        82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555555555444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.81  E-value=3.7  Score=33.61  Aligned_cols=14  Identities=29%  Similarity=0.643  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHH
Q 015739          281 SDVEALRAKVRLAE  294 (401)
Q Consensus       281 aqve~Lrakvk~aE  294 (401)
                      .++..|.++++++|
T Consensus        86 ~evasLnRriqllE   99 (101)
T 3u59_A           86 AEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            35666666666654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.77  E-value=1.6  Score=49.12  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFT----DAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~----~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      .+++|+.+++.+..|...|..++.    +|+++...|..||..|++++..|...+...+
T Consensus       992 e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A          992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444433332    2345556677788888888888875554443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=91.35  E-value=3.9  Score=36.69  Aligned_cols=73  Identities=12%  Similarity=0.081  Sum_probs=50.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739          222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      ++.+-+..-++.-...+..+.+-..-++.|+.|...|..++..+.++...+..||..|-.+.  +.++-+.|+.|
T Consensus        72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW--M~rk~qEAe~M  144 (152)
T 3a7p_A           72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW--LKKTEKETEAM  144 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            33333333333333344445566677888999999999999999999999999998887764  33455566655

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=91.34  E-value=0.58  Score=39.35  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=13.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHH
Q 015739          272 ANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       272 l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ...+=..|+++++.|+.+|+..|
T Consensus        73 ~~~~~e~Lq~E~erLr~~v~~lE   95 (100)
T 1go4_E           73 LREDHSQLQAECERLRGLLRAME   95 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444556666666666665444

>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}

Probab=90.79  E-value=2.4  Score=32.47  Aligned_cols=61  Identities=15%  Similarity=0.175  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739          237 KQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV  297 (401)
Q Consensus       237 Kk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv  297 (401)
                      |...+.+||.++..++.--..+..++..+.-.+..+..++..=+..++.|.+||...+.++
T Consensus         4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~l   64 (65)
T 3m0d_C            4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQTL   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence            3456777888888877766666666666666665555555555777899999998888765

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=90.48  E-value=2.5  Score=34.55  Aligned_cols=37  Identities=16%  Similarity=0.249  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhh
Q 015739          263 TDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSV  299 (401)
Q Consensus       263 ~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~~  299 (401)
                      ..+.++...|..||..|+.+|+.|+.++..+..++..
T Consensus        39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~   75 (87)
T 1hjb_A           39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667777777777777777777766666544

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=90.40  E-value=1.1  Score=36.37  Aligned_cols=44  Identities=18%  Similarity=0.223  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739          253 GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       253 ~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      .||..|+.++..+...+..+..||+.|+.=+...+.-+.+.++|
T Consensus        34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~l   77 (79)
T 2zxx_A           34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999998887777766555554

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=90.33  E-value=1.4  Score=33.69  Aligned_cols=37  Identities=27%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          222 RMVSNRESARRSRKRKQAHMQELELQVERLKGENATL  258 (401)
Q Consensus       222 R~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L  258 (401)
                      ++-+||.++|++|.|=+..|+-...-...-..||..|
T Consensus         5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl   41 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL   41 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence            3456999999999998876655544333333444333

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=89.82  E-value=0.87  Score=34.73  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739          260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~  298 (401)
                      .+...+.++...|..+|..|+.++..|+..+..+..++.
T Consensus        23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345566677777888888888888888888888776653

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=89.53  E-value=2.7  Score=33.63  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739          264 DAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       264 ~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      .+.++...|..||..|+.+|+.|+..+..+..+
T Consensus        40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l   72 (78)
T 1gu4_A           40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL   72 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666666666666666555544

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=89.43  E-value=0.42  Score=31.87  Aligned_cols=22  Identities=41%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHH
Q 015739          269 YKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       269 ~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      +..+++||++||+++++|-+||
T Consensus         8 lasleaenkqlkakveellakv   29 (31)
T 1p9i_A            8 LASLEAENKQLKAKVEELLAKV   29 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999998876

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=89.03  E-value=1.5  Score=31.88  Aligned_cols=44  Identities=30%  Similarity=0.382  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      .+..||.+|..|+.||+.|+++.-.-..-+       .-|..++..||.|+
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdli-------aylekeianlrkki   47 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLI-------AYLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHH-------HHHHHHHHHHHHHh
Confidence            467899999999999999988753322222       34556666666554

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=88.92  E-value=0.44  Score=32.84  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      |..||.+|+.|..+|..|..++..|+
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk   27 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLK   27 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            56788888888877777776665443

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=88.90  E-value=0.033  Score=46.19  Aligned_cols=26  Identities=35%  Similarity=0.358  Sum_probs=22.7

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHH
Q 015739          214 PIDLKRIRRMVSNRESARRSRKRKQA  239 (401)
Q Consensus       214 ~~e~KR~RR~lsNRESARRSR~RKk~  239 (401)
                      ....|..||+.+||++|++||+||..
T Consensus        62 l~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           62 LALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            45678899999999999999999864

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=88.75  E-value=1.6  Score=31.94  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      +||.+|+.|+.--..|.-++..|--+|...   ...||+++..|+.+|
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~v   46 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQV   46 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence            566677766666666666665554444333   467888888887653

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=88.70  E-value=1.3  Score=37.38  Aligned_cols=82  Identities=15%  Similarity=0.290  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          215 IDLKRIRRMVSNRESARRSRKRK--QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       215 ~e~KR~RR~lsNRESARRSR~RK--k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      .++|=.|-|++|   |+-=-.|-  .=+++-|..+++.++.....|.+++.+..+.+..+.-....|+.++..|+.+++.
T Consensus         7 vEEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q   83 (103)
T 4h22_A            7 VEEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ   83 (103)
T ss_dssp             -CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555667776   22211111  1135566667777777777777777777777777777788888888888888887


Q ss_pred             HHhHhhh
Q 015739          293 AEDVVSV  299 (401)
Q Consensus       293 aE~lv~~  299 (401)
                      ++++|.-
T Consensus        84 RD~LI~E   90 (103)
T 4h22_A           84 REEMLEP   90 (103)
T ss_dssp             TTSCC--
T ss_pred             HHHHHHH
Confidence            7766543

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=88.65  E-value=2.2  Score=33.89  Aligned_cols=49  Identities=12%  Similarity=0.306  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      .++..+++.++.+|..|..++..+++++..-..+-..++.++..+-..+
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L   51 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL   51 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577888888999999999999988888888777777777766665443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=88.42  E-value=0.58  Score=32.40  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDA  265 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L  265 (401)
                      +|..||.+|+.|-.+|..|..++..|
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rL   27 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRL   27 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            46778888887777777766666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.37  E-value=4.5  Score=40.83  Aligned_cols=39  Identities=15%  Similarity=0.171  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739          251 LKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK  289 (401)
Q Consensus       251 Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak  289 (401)
                      ++.++..+.+++...++++..++.|...|+.+++..+++
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~  559 (597)
T 3oja_B          521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK  559 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhH
Confidence            333333333333333444444444444444444433333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.24  E-value=2.9  Score=34.96  Aligned_cols=49  Identities=18%  Similarity=0.234  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK  289 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak  289 (401)
                      +..|+.++...+.+...|..++..-..+...+..+...+..+++.|.+.
T Consensus        14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas   62 (97)
T 2eqb_B           14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS   62 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555555555555555555555544

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=87.98  E-value=0.87  Score=31.90  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      +|..||.+|+.|..++..|..++..|+
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk   28 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLK   28 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            477888888888888877777666554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=87.97  E-value=4.9  Score=45.18  Aligned_cols=59  Identities=10%  Similarity=0.045  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHhH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEAN----TNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~----~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      ++.+..|+.+++.|+.+..++.++...+++++..+.    ..-..|+.+...|++++..++..
T Consensus       983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A          983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555554333    22223555555566555555533

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=87.67  E-value=2.3  Score=34.04  Aligned_cols=49  Identities=18%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      ++||.+|.+|+.--..|.-++..|--+|...   ...||+++..|..+|+..
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~~~~   51 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFLKPL   51 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence            4567777777776666666666655555443   577999999999988753

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=87.57  E-value=1.6  Score=32.77  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739          261 QFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV  297 (401)
Q Consensus       261 qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv  297 (401)
                      .+..|+.+...+..+|..|+.++..|+..+..+..++
T Consensus        23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556677777888888888888888888887766554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=87.53  E-value=1.6  Score=33.17  Aligned_cols=39  Identities=8%  Similarity=0.128  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739          260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~  298 (401)
                      ..+..|+.+...|..+|..|+.++..|+..+..+..++.
T Consensus        23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~   61 (63)
T 2wt7_A           23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778888899999999999999999888877654

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=87.51  E-value=1.1  Score=35.26  Aligned_cols=27  Identities=15%  Similarity=0.080  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      .+.+|+.....|..||..|+.++..|.
T Consensus        37 ~v~~le~~~~~l~~en~~Lr~~i~~L~   63 (70)
T 1gd2_E           37 QVVTLKELHSSTTLENDQLRQKVRQLE   63 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888889999999988776544

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=87.25  E-value=1.4  Score=35.55  Aligned_cols=49  Identities=20%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          242 QELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       242 ~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      +++..+++.++.+|..|..++..+++++..-..+-..++.++..+-..+
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L   57 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL   57 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888888888888888777776667777666654433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=86.62  E-value=14  Score=31.43  Aligned_cols=54  Identities=15%  Similarity=0.199  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      .+..|+.++..|+..+..|...+..|.+....+....|..-.-++.+..|+..+
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a   89 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA   89 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence            356677888888888888888888888887777777777777777777666543

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=86.33  E-value=3.3  Score=35.81  Aligned_cols=44  Identities=14%  Similarity=0.204  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          243 ELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       243 eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      .|+.+..+-+....+|..++..|.+++..+..|=..||.+.+.|
T Consensus        61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~  104 (121)
T 3mq7_A           61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL  104 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence            34433333333344444444444444444444444444444444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=86.09  E-value=10  Score=34.49  Aligned_cols=62  Identities=13%  Similarity=0.228  Sum_probs=40.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015739          221 RRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAK  289 (401)
Q Consensus       221 RR~lsNRESARRSR~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrak  289 (401)
                      ..+..-=+.=||.|.+..+.+.+|+.+|..|+.|...++..+       ..+..+|+.|...+..|+..
T Consensus        72 ~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~-------~k~~~e~r~L~Ekl~~lEKe  133 (168)
T 3o0z_A           72 YQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL-------EKVEGERKEAQDMLNHSEKE  133 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            344444555677777778888888888877777766665544       35566666666666666543

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=85.91  E-value=3  Score=31.06  Aligned_cols=41  Identities=27%  Similarity=0.507  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      ..+.+|..++..|...|..|..-|....+++       ..|+++|+.|
T Consensus         9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el-------~~Lkeele~L   49 (51)
T 3m91_A            9 RDIHQLEARIDSLAARNSKLMETLKEARQQL-------LALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence            3455778888888888888877776655555       3455555554

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=85.77  E-value=14  Score=33.97  Aligned_cols=53  Identities=15%  Similarity=0.192  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      +..|+.++..|+..+..|..++..|.+....+....|.+..-++.+..|+..+
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a  142 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA  142 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            66777777777777777777777777777777777777777666666665433

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=85.12  E-value=1.1  Score=30.94  Aligned_cols=26  Identities=12%  Similarity=0.188  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDA  265 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L  265 (401)
                      +|..||.+|+.|-.+|..|..++..|
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RL   27 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARI   27 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            46778888888777777776666544

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=84.97  E-value=2.7  Score=31.18  Aligned_cols=37  Identities=24%  Similarity=0.199  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739          245 ELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS  281 (401)
Q Consensus       245 E~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa  281 (401)
                      |.++..|+.-|..|..+++.|+..+..++.|+..|+.
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~   39 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK   39 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            6788899999999999999888888777766665554

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=84.83  E-value=6.3  Score=35.36  Aligned_cols=9  Identities=11%  Similarity=0.268  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 015739          244 LELQVERLK  252 (401)
Q Consensus       244 LE~qV~~Le  252 (401)
                      |+.++..|+
T Consensus        73 L~~El~~l~   81 (152)
T 3a7p_A           73 LQKELKSKE   81 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=84.02  E-value=2.7  Score=33.46  Aligned_cols=48  Identities=17%  Similarity=0.081  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLA  293 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~a  293 (401)
                      ++|.+||.++..++.-...|...+...++++.       .|+.++..|..|++.+
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id-------~L~~ql~~L~~rl~~~   61 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGA-------RNAELIRHLLEDLGKV   61 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence            46788888888888777777777765555543       4445555555554433

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=83.82  E-value=1.5  Score=30.65  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      +|..||.+|+.|..++..|..++..|+
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~   28 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLE   28 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467788888888888887777766554

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=83.77  E-value=1.4  Score=30.30  Aligned_cols=26  Identities=8%  Similarity=0.210  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      |..||.+|+.|-.+|..|..++..|+
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56788888877777777766665443

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=83.34  E-value=2.9  Score=31.91  Aligned_cols=38  Identities=24%  Similarity=0.174  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739          244 LELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKS  281 (401)
Q Consensus       244 LE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKa  281 (401)
                      -|.++..|+..|.+|..++..|+.++...+.|+..|.+
T Consensus         9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~   46 (58)
T 3a2a_A            9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK   46 (58)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678888888999998888888887777766666554

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=83.02  E-value=1.4  Score=30.46  Aligned_cols=27  Identities=11%  Similarity=0.314  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      +|..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk   28 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence            467788888888888777777665543

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=82.79  E-value=5.3  Score=31.45  Aligned_cols=56  Identities=11%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ..++.++.++...+.....+..++..|+.++..+..+=..+..++.....+|..++
T Consensus        20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae   75 (81)
T 1ic2_A           20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555544444455555555555554443

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=82.77  E-value=1.5  Score=30.38  Aligned_cols=27  Identities=11%  Similarity=0.165  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      +|..||.+|+.|-.+|..|..++..|+
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk   28 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467788888888888888777776543

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=82.50  E-value=8  Score=31.18  Aligned_cols=46  Identities=13%  Similarity=0.247  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      +.+|-.+++.|+.|...|+-+++.+..++..+....+.+..++..+
T Consensus        22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R   67 (83)
T 2xdj_A           22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888888888888888888887777777777777766666543

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=82.49  E-value=17  Score=29.10  Aligned_cols=53  Identities=23%  Similarity=0.266  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      .....+|+.+...|..+...|..++.++...+..|......|-.++..|..+|
T Consensus        34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34457788888889988888888888888888888888888888888877665

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=82.39  E-value=1.7  Score=32.75  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 015739          260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDV  296 (401)
Q Consensus       260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~l  296 (401)
                      ..+..|..+...+..+|..|+.++..|+..+..+..+
T Consensus        22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~   58 (62)
T 1jnm_A           22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK   58 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777788888899999888888877655433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=82.15  E-value=8.8  Score=43.14  Aligned_cols=25  Identities=8%  Similarity=0.122  Sum_probs=11.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          268 QYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       268 q~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      ++..+..+...|+.+++.|+.++..
T Consensus       914 ~l~~l~~~~~~Le~~l~ele~elee  938 (1184)
T 1i84_S          914 MRVRLAAKKQELEEILHEMEARIEE  938 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=82.15  E-value=23  Score=30.23  Aligned_cols=69  Identities=16%  Similarity=0.124  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          226 NRESARRSRKRKQAHMQELELQVERLKG---ENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       226 NRESARRSR~RKk~~L~eLE~qV~~Le~---EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      |-.+|-..=..|+..+++|+.++.+++.   ...-|+.|+......|..-...=..|-.+.+.|..+|..+.
T Consensus        32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq  103 (110)
T 2v4h_A           32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ  103 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence            4556667777788889999988888887   66678888888888886665555556666666665554443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=82.05  E-value=4.4  Score=40.65  Aligned_cols=49  Identities=14%  Similarity=0.218  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEAL  286 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~L  286 (401)
                      ++.+..|+.++..|+.+.+.|..++..+.+++...+..-+.|--++++|
T Consensus         9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el   57 (403)
T 4etp_A            9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL   57 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445555555555555555555555555555555544444444444444

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=82.01  E-value=6.1  Score=33.35  Aligned_cols=30  Identities=37%  Similarity=0.516  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQ  267 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~q  267 (401)
                      -..+.+|+.+|+.|+.||..|+.+...-.+
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~   93 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELHRQ   93 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            467899999999999999999887765443

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=82.00  E-value=1.7  Score=30.13  Aligned_cols=27  Identities=26%  Similarity=0.272  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          240 HMQELELQVERLKGENATLYKQFTDAA  266 (401)
Q Consensus       240 ~L~eLE~qV~~Le~EN~~L~~qL~~L~  266 (401)
                      ++..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~   28 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLA   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467788888888887777776665443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=81.83  E-value=17  Score=30.30  Aligned_cols=71  Identities=15%  Similarity=0.129  Sum_probs=55.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          224 VSNRESARRSRKRKQAHMQELELQVERLK---GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAE  294 (401)
Q Consensus       224 lsNRESARRSR~RKk~~L~eLE~qV~~Le---~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE  294 (401)
                      ..+-.+|-..=..|+..+++|...+.+++   ..+.-|..|+......|..-...=..|..+.+.|..++..+.
T Consensus         8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq   81 (94)
T 3jsv_C            8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ   81 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34566777777889999999999998888   666779999999999988777777777777777776665444

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=81.78  E-value=2.1  Score=30.02  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015739          252 KGENATLYKQFTDAAQQYKEANTNNRVLKS  281 (401)
Q Consensus       252 e~EN~~L~~qL~~L~qq~~~l~~ENr~LKa  281 (401)
                      -.||.+|.+.++.-..++..|..||..|+.
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E   35 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELAE   35 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            368999999999999999999999988863

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=81.52  E-value=9.7  Score=35.68  Aligned_cols=45  Identities=20%  Similarity=0.233  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739          253 GENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV  297 (401)
Q Consensus       253 ~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv  297 (401)
                      .||..|+.++..+..++..+..||..||.=++.++.-+.+.++|.
T Consensus       115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~  159 (209)
T 2wvr_A          115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN  159 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578899999999999999999999999987777766555555543

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=81.12  E-value=1.9  Score=33.94  Aligned_cols=6  Identities=17%  Similarity=0.401  Sum_probs=2.5

Q ss_pred             HHHHHH
Q 015739          240 HMQELE  245 (401)
Q Consensus       240 ~L~eLE  245 (401)
                      .+.+|.
T Consensus        20 ~f~~Lr   25 (83)
T 1nkp_B           20 SFHSLR   25 (83)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            344444

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=81.03  E-value=2  Score=41.22  Aligned_cols=31  Identities=26%  Similarity=0.485  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQ  268 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq  268 (401)
                      ...+.+|+.++..|...|..|...+..++++
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~E   83 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQ   83 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446677777777777777777666544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.80  E-value=17  Score=35.99  Aligned_cols=29  Identities=10%  Similarity=-0.075  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015739          264 DAAQQYKEANTNNRVLKSDVEALRAKVRL  292 (401)
Q Consensus       264 ~L~qq~~~l~~ENr~LKaqve~Lrakvk~  292 (401)
                      ..+++...+..||..|+..++.+..++..
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (487)
T 3oja_A          439 MYQHKETQLAEENARLKKLNGEADLALAS  467 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence            33344444444444444444444444433

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=80.75  E-value=2.2  Score=29.41  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTDA  265 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L  265 (401)
                      |..||.+|+.|-.++..|..++..+
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl   26 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARN   26 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHH
Confidence            6678888888888877777666544

>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A

Probab=80.69  E-value=16  Score=27.41  Aligned_cols=58  Identities=19%  Similarity=0.274  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739          241 MQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~  298 (401)
                      +..|+.++..++.--..+..++..+.-+...+..++...+..++.|.+|+.-.+.++.
T Consensus         7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~l~   64 (66)
T 3m0a_A            7 CESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIG   64 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHc
Confidence            3344555555555444555555555555555666667778888889988887877754

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=80.65  E-value=1.4  Score=41.63  Aligned_cols=33  Identities=21%  Similarity=0.110  Sum_probs=20.0

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 015739          215 IDLKRIRRMVSNRESARRSRKRKQAHMQELELQ  247 (401)
Q Consensus       215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eLE~q  247 (401)
                      .+.||.||.|+-=.==.|-|+-|..-.+++-.+
T Consensus       117 P~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~  149 (250)
T 2ve7_C          117 PKAKRTSRFLSGIINFIHFREACRETYMEFLWQ  149 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999876555555555555444443333

>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*

Probab=80.37  E-value=5.9  Score=33.84  Aligned_cols=25  Identities=40%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          239 AHMQELELQVERLKGENATLYKQFT  263 (401)
Q Consensus       239 ~~L~eLE~qV~~Le~EN~~L~~qL~  263 (401)
                      .-+++|..++.+|+-||..|++++.
T Consensus         8 ~t~EeLaaeL~kLqmENK~LKkkl~   32 (110)
T 2oa5_A            8 KTYEEMVKEVERLKLENKTLKQKVK   32 (110)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3479999999999999999999997

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=80.15  E-value=17  Score=29.21  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Q 015739          234 RKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVV  297 (401)
Q Consensus       234 R~RKk~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv  297 (401)
                      |+|=++.+..-..+++.|+.-..+|..=-..|..-+..+..|-..|...++.|+.|.+-++..+
T Consensus        13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l   76 (78)
T 3iv1_A           13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444556666777777777777777777777777777888888889999999988887766543

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=80.01  E-value=2.2  Score=32.60  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015739          260 KQFTDAAQQYKEANTNNRVLKSDVEALRAKV  290 (401)
Q Consensus       260 ~qL~~L~qq~~~l~~ENr~LKaqve~Lrakv  290 (401)
                      ..+..|..+...|..+|..|+.++..|+..|
T Consensus        30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667777777888889999888888765

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=80.01  E-value=3.9  Score=37.88  Aligned_cols=18  Identities=33%  Similarity=0.385  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 015739          246 LQVERLKGENATLYKQFT  263 (401)
Q Consensus       246 ~qV~~Le~EN~~L~~qL~  263 (401)
                      .-|..|..||..|..++.
T Consensus        20 ~LV~~L~~En~~L~~ql~   37 (190)
T 4emc_A           20 LLVANLVNENFVLSEKLD   37 (190)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	93.17
d2oa5a1	96	Uncharacterized protein BQLF2 {Murid herpesvirus 4	81.77
d1lrza1	65	Methicillin resistance protein FemA probable tRNA-	80.15

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.17  E-value=0.019  Score=44.13  Aligned_cols=30  Identities=27%  Similarity=0.457  Sum_probs=25.4

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015739          215 IDLKRIRRMVSNRESARRSRKRKQAHMQEL  244 (401)
Q Consensus       215 ~e~KR~RR~lsNRESARRSR~RKk~~L~eL  244 (401)
                      .-.+..||+=+||.+||+||+||....++|
T Consensus        45 ~lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          45 QLIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            455778999999999999999999876653

>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}

class: Alpha and beta proteins (a+b)
fold: BLRF2-like
superfamily: BLRF2-like
family: BLRF2-like
domain: Uncharacterized protein BQLF2
species: Murid herpesvirus 4 [TaxId: 33708]

Probab=81.77  E-value=2.3  Score=33.61  Aligned_cols=24  Identities=42%  Similarity=0.490  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 015739          241 MQELELQVERLKGENATLYKQFTD  264 (401)
Q Consensus       241 L~eLE~qV~~Le~EN~~L~~qL~~  264 (401)
                      +++|..++.+|+.||..|++++..
T Consensus         4 ~EeLaaeL~rL~~ENk~LKkkl~~   27 (96)
T d2oa5a1           4 YEEMVKEVERLKLENKTLKQKVKS   27 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999875

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Methicillin resistance protein FemA probable tRNA-binding arm
domain: Methicillin resistance protein FemA probable tRNA-binding arm
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.15  E-value=6  Score=28.84  Aligned_cols=60  Identities=15%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q 015739          238 QAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVS  298 (401)
Q Consensus       238 k~~L~eLE~qV~~Le~EN~~L~~qL~~L~qq~~~l~~ENr~LKaqve~Lrakvk~aE~lv~  298 (401)
                      ..|+..|+.+...|..+...+...|..- -.-......=+.|..|++.+.+|+.-++.++.
T Consensus         2 ~eYl~~L~~~~~~L~~~i~k~~~~lekn-P~skK~~nk~~el~~Q~~s~~~ki~Ea~~li~   61 (65)
T d1lrza1           2 DEYIKELNEERDILNKDLNKALKDIEKR-PENKKAHNKRDNLQQQLDANEQKIEEGKRLQE   61 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999988888877641 00011122336788999999999988888765