Citrus Sinensis ID: 015752

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MLDVHLRLFRERLKRVLAGEEGTLPLPDSTNLTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSYLFT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHccccccccEEEEEcccHHHHHHcccccccEEEcccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEcccccHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHccHHHHHcccEEEEEEEcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHccccccccccEEEEEEccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLDVHLRLFRERLKRVLageegtlplpdstnltplfQNLLTESEIIVTTLLGKYEVDMARHLFQLLREdfddsnislpflqlldleesdeedvETADILEILEDINDFVHESEEAIDTYFTNIMQQqnseaesessTNMALLVGLHTKIIDIRSrmqqlppgdngfdiseKSNEIIHLLsegqprldishFERGREELFDLLIEGSSGLSVVAILDsggfdktafaadtynnnhvkfyfDCHAWVRVSLDYDFRRILDDIIksvippsrvsviigedyQLKKSILRDYLTNKKYFIVLddvfddseiwidveellpddengsrvfitvtdpdllaslemengekirldsvlfggplirlKHEAWQFFILHygsmplenylqgeAFRQLGDKFVLCWSYLFT
Flexible Loop (DISEMBL)
MLDVHLRLFRERLKRvlageegtlplpdstnlTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIiksvippsrvsviigedyqlKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEellpddengsrVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSYLFT
Low Complexity Region (SEG)
MLDVHLRLFRERLKRVLAGEEGTLPLPDSTNLTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFlqlldleesdeedvetadILEILEDINDFVHESEEAIDTYFTNIMqqqnseaesessTNMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSYLFT
Disordered region (IsUnstruct)
****HLRLFRERLKRVLAGEEGTLPLPDSTNLTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQLLDLEE***EDVETADILEILEDINDFVHESEEAIDTYFTNI***************MALLVGLHTKIIDIR*********************IIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSYLF*
Disordered Region (DISOPRED)
*LDVHLRLFRERLKRVLAGEEGTLPLPDSTNLTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFT*******************LLVGLHTKIIDIRSRMQQLPPG*************************ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV***************LKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPL*RLKHEAWQFFILHYGSM*****L*GEAFRQLGDKFVLCWSYLFT
Disordered Region (DISEMBL)
MLDVHLRLFRERLKRVLAGEEGTLPLPDSTNLTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQ***********TNMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSYLFT
Disordered Region (DISPRO)
*LDVHLRLFRERLKRVLAGEEGTLPLPDSTNLTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLPPGDNGFD******************LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSR***IIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSYLFT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDVHLRLFRERLKRVLAGEEGTLPLPDSTNLTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSYLFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
P0C8S1	906	Probable disease resistan	yes	no	0.705	0.312	0.239	2e-14
Q7XBQ9	970	Disease resistance protei	N/A	no	0.588	0.243	0.238	2e-12
Q9M667	835	Disease resistance protei	no	no	0.668	0.320	0.247	4e-11
Q39214	926	Disease resistance protei	no	no	0.304	0.131	0.301	2e-10
Q7XA40	992	Putative disease resistan	N/A	no	0.329	0.133	0.309	2e-10
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.630	0.280	0.231	4e-10
A9QGV6	910	Inactive disease suscepti	no	no	0.633	0.279	0.241	4e-10
A7XGN8	910	Disease susceptibility pr	no	no	0.633	0.279	0.241	4e-10
Q7XA42	979	Putative disease resistan	N/A	no	0.588	0.241	0.227	4e-10
Q9SX38	857	Putative disease resistan	no	no	0.593	0.277	0.248	6e-10

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 34/317 (10%)

Query: 68  EDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQ 127
           E  D     L  LQ L L+++D +  ET  +   LED+ D V+++++ I+++  N ++ +
Sbjct: 29  EQVDGLKRQLGRLQSL-LKDADAKKNETERVRNFLEDVKDIVYDADDIIESFLLNELRGK 87

Query: 128 NSEAESESSTNMALLV----------GLHTKIIDIRSRMQQLP------PGDNGFDISEK 171
               + +  T    LV          G+  +I ++   MQ L        G     + E+
Sbjct: 88  EKGIKKQVRTLACFLVDRRKFASDIEGITKRISEVIVGMQSLGIQHIADGGGRSLSLQER 147

Query: 172 SNEIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231
             EI    S      D+   ++  EEL D L+E  S + VV++   GG  KT  A   ++
Sbjct: 148 QREIRQTFSRNSES-DLVGLDQSVEELVDHLVENDS-VQVVSVSGMGGIGKTTLARQVFH 205

Query: 232 NNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTN 291
           ++ V+ +FD  +WV VS  +  + +   I++ + P     +I  ++Y L+  +  + L +
Sbjct: 206 HDIVRRHFDGFSWVCVSQQFTRKDVWQRILQDLRPYDE-GIIQMDEYTLQGELF-ELLES 263

Query: 292 KKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVL 351
            +Y +VLDDV+ + E W  ++ + P  + G ++ +T  +           G  +  D   
Sbjct: 264 GRYLLVLDDVWKE-EDWDRIKAVFP-HKRGWKMLLTSRN----------EGLGLHADPTC 311

Query: 352 FG-GPLIRLKHEAWQFF 367
           F   P I    ++W+ F
Sbjct: 312 FAFRPRILTPEQSWKLF 328

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 20/256 (7%)

Query: 85  LEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVG 144
           LE++ E+ +    +   L+ +N   +E ++ +D Y T   +   SE        +     
Sbjct: 45  LEDAQEKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFSQSEYGRYHPKVIPFRHK 104

Query: 145 LHTKIIDIRSRMQQLPPGDNGFDISEK-------SNEIIHLLSEGQPRLDISHFERGREE 197
           +  ++  +  +++ +      F + EK         E   +L+E Q    +   ++ ++E
Sbjct: 105 VGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRRETGSVLTEPQ----VYGRDKEKDE 160

Query: 198 LFDLLIEGSS---GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254
           +  +LI   S    LSV+ IL  GG  KT  A   +N+  V  +F    W+ VS D+D +
Sbjct: 161 IVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIWICVSEDFDEK 220

Query: 255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVE 312
           R++  I++S+        ++GE D    +  L++ L  K+Y +VLDDV++ D + W ++ 
Sbjct: 221 RLIKAIVESI----EGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLR 276

Query: 313 ELLPDDENGSRVFITV 328
            +L    +G+ V  T 
Sbjct: 277 AVLKVGASGASVLTTT 292

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 43/311 (13%)

Query: 47  VTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQ--LLDLEESDEEDVETADILEILED 104
           V   +G Y ++ A  +F  ++ED ++    L  +   L D+E  + ED  + +  ++   
Sbjct: 9   VVGKIGNYLIEEA-SMFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVSKEWSKL--- 64

Query: 105 INDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLPPGDN 164
           + DF ++ E+ +DTY   + ++         +  +   +  ++ + DIR   +++     
Sbjct: 65  VLDFAYDVEDVLDTYHLKLEERSQRRGLRRLTNKIGRKMDAYSIVDDIRILKRRI----- 119

Query: 165 GFDISEKSNEI-IHLLSEGQ-----PRLDISHFERGR-----------EELFDLLIEG-- 205
             DI+ K     I  L E Q       L +    R R           E+   +L+E   
Sbjct: 120 -LDITRKRETYGIGGLKEPQGGGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLL 178

Query: 206 ---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK 262
                   +++I   GG  KTA A   YN+  VK  F+  AW  VS +Y    IL  II+
Sbjct: 179 DYEEKNRFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIR 238

Query: 263 SVIPPS-----RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPD 317
           S+   S     ++     E+ ++    L   L  KKY +V+DD++ + E W  ++  LP 
Sbjct: 239 SLGMTSGEELEKIRKFAEEELEV---YLYGLLEGKKYLVVVDDIW-EREAWDSLKRALPC 294

Query: 318 DENGSRVFITV 328
           +  GSRV IT 
Sbjct: 295 NHEGSRVIITT 305

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV 270
           VVA++  GG  KT  +A+ + +  V+ +F+ +AWV +S  Y    +   +IK     +  
Sbjct: 195 VVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADT 254

Query: 271 SV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
            +   +    Y+     L +YL +K+Y +VLDDV+  + +W ++   LPD   GSRV +T
Sbjct: 255 QIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVW-TTGLWREISIALPDGIYGSRVMMT 313

Query: 328 VTDPDL 333
             D ++
Sbjct: 314 TRDMNV 319

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 10/142 (7%)

Query: 192 ERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS 248
           E+  +E+  +LI     S  + V+ IL  GG  KT  A   +N+  +  +F+   WV VS
Sbjct: 155 EKEEDEIVKILINNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVS 214

Query: 249 LDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSE 306
            D+D +R++  I++S+   S     +G+ D    +  L++ L  K+YF+VLDDV++ D E
Sbjct: 215 DDFDEKRLIKAIVESIEGKS-----LGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQE 269

Query: 307 IWIDVEELLPDDENGSRVFITV 328
            W ++  +L    +G+ + IT 
Sbjct: 270 KWDNLRAVLKIGASGASILITT 291

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 23/276 (8%)

Query: 68  EDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQ 127
           E  D     L  LQ L L+++D +   +  +   LED+ D V ++E+ I++Y  N ++ +
Sbjct: 29  EQVDGLKRQLRGLQSL-LKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESYVLNKLRGE 87

Query: 128 NSEAESESSTNMALLV----------GLHTKIIDIRSRMQ------QLPPGDNGFDISEK 171
               ++        L           G+  +I  +   MQ      Q+  G     + + 
Sbjct: 88  GKGVKNHVRRLACFLTDRHKVASDIEGITKRISKVIGEMQSLGIQQQIIDGGRSLSLQDI 147

Query: 172 SNEIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN 231
             EI           D+   E+  EEL   ++E    + VV+I   GG  KT  A   ++
Sbjct: 148 QREIRQTFPNSSES-DLVGVEQSVEELVGPMVE-IDNIQVVSISGMGGIGKTTLARQIFH 205

Query: 232 NNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTN 291
           ++ V+ +FD  AWV VS  +  + +   I++  + P    ++  ++Y ++  + +  L  
Sbjct: 206 HDLVRRHFDGFAWVCVSQQFTQKHVWQRILQE-LRPHDGEILQMDEYTIQGKLFQ-LLET 263

Query: 292 KKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
            +Y +VLDDV+ + E W  ++E+ P  + G ++ +T
Sbjct: 264 GRYLVVLDDVWKE-EDWDRIKEVFP-RKRGWKMLLT 297

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A9QGV6|LOV1C_ARATH Inactive disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 124/277 (44%), Gaps = 23/277 (8%)

Query: 68  EDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQ 127
           E  D     L  LQ L L+++D +  E+  +   LED+ D V+++E+ I+++  N  + +
Sbjct: 29  EQVDGLKRQLGRLQSL-LKDADAKKHESERVRNFLEDVRDIVYDAEDIIESFLLNEFRAK 87

Query: 128 NSEAESESSTNMALLV----------GLHTKIIDIRSRM-----QQLPPGDNGFDISEKS 172
               +  +      LV          G+  KI ++   M     Q++  G +   + E+ 
Sbjct: 88  EKGIKKHARRLACFLVDRRKFDSDIKGITKKISEVIGGMKSLGIQEIIDGASSMSLQERQ 147

Query: 173 NEI--IHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTY 230
            E   I          D+   E+  E L   L+E  + + VV+I   GG  KT  A   +
Sbjct: 148 REQKEIRQTFANSSESDLVGVEQSVEALAGHLVENDN-IQVVSISGMGGIGKTTLARQVF 206

Query: 231 NNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT 290
           +++ V+ +FD  AWV VS  +  + +   I + + P +    I   D  + +  L   L 
Sbjct: 207 HHDMVQRHFDGFAWVFVSQQFAQKHVWQRIWQELQPQN--GDISHMDEHILQGKLFKLLE 264

Query: 291 NKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
             +Y +VLDDV+ + E W  ++ + P  + G ++ +T
Sbjct: 265 TGRYLVVLDDVWKE-EDWDRIKAVFP-RKRGWKMLLT 299

Arabidopsis thaliana (taxid: 3702)

>sp|A7XGN8|LOV1B_ARATH Disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 124/277 (44%), Gaps = 23/277 (8%)

Query: 68  EDFDDSNISLPFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQ 127
           E  D     L  LQ L L+++D +  E+  +   LED+ D V+++E+ I+++  N  + +
Sbjct: 29  EQVDGLKRQLGRLQSL-LKDADAKKHESERVRNFLEDVRDIVYDAEDIIESFLLNEFRTK 87

Query: 128 NSEAESESSTNMALLV----------GLHTKIIDIRSRM-----QQLPPGDNGFDISEKS 172
               +  +      LV          G+  KI ++   M     Q++  G +   + E+ 
Sbjct: 88  EKGIKKHARRLACFLVDRRKFASDIKGITKKISEVIGGMKSLGIQEIIDGASSMSLQERQ 147

Query: 173 NEI--IHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTY 230
            E   I          D+   E+  E L   L+E  + + VV+I   GG  KT  A   +
Sbjct: 148 REQKEIRQTFANSSESDLVGVEQSVEALAGHLVENDN-IQVVSISGMGGIGKTTLARQVF 206

Query: 231 NNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT 290
           +++ V+ +FD  AWV VS  +  + +   I + + P +    I   D  + +  L   L 
Sbjct: 207 HHDMVQRHFDGFAWVFVSQQFTQKHVWQRIWQELQPQN--GDISHMDEHILQGKLFKLLE 264

Query: 291 NKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
             +Y +VLDDV+ + E W  ++ + P  + G ++ +T
Sbjct: 265 TGRYLVVLDDVWKE-EDWDRIKAVFP-RKRGWKMLLT 299

Confers susceptibility to the fungus Cochliobolus victoriae by conditioning victorin-dependent (victorin is a toxin synthesized by C.victoriae) induction of defense-associated proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 19/255 (7%)

Query: 85  LEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVG 144
           LE++ E+ +    +   L+ +N   +E ++ +D Y T   +   SE        +     
Sbjct: 45  LEDAQEKQLNDKPLENWLQKLNAATYEVDDILDEYKTKATRFLQSEYGRYHPKVIPFRHK 104

Query: 145 LHTKIIDIRSRMQQLPPGDNGFDISEK-------SNEIIHLLSEGQPRLDISHFERGREE 197
           +  ++  +  ++  +      F + EK       + E   +L+E Q    +   ++ ++E
Sbjct: 105 VGKRMDQVMKKLNAIAEERKKFHLQEKIIERQAATRETGSVLTEPQ----VYGRDKEKDE 160

Query: 198 LFDLLIEGSS---GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR 254
           +  +LI  +S    LSV+ IL  GG  KT  +   +N+  V   F    W+ +S D++ +
Sbjct: 161 IVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIWICISDDFNEK 220

Query: 255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEE 313
           R++  I++S+   S   +    D    +  L++ L  K+YF+VLDDV++ D   W ++  
Sbjct: 221 RLIKAIVESIEGKSLSDM----DLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRA 276

Query: 314 LLPDDENGSRVFITV 328
           +L    +G+ V  T 
Sbjct: 277 VLKVGASGAFVLTTT 291

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 36/274 (13%)

Query: 85  LEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALL-- 142
           L+++DE+  E+  +   +  I +  +++E+ ++ +F         +AES     M  +  
Sbjct: 45  LKDADEKQHESERVRNWVAGIREASYDAEDILEAFFL--------KAESRKQKGMKRVLR 96

Query: 143 ---------VGLHT---KIIDIRSRMQQLPPGDNGFDISEK-SNEIIHL---LSEGQPRL 186
                    V LH+   +I +I SR+ ++      F I E    E + L   L E +   
Sbjct: 97  RLACILNEAVSLHSVGSEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSLREQRQSF 156

Query: 187 ------DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD 240
                 ++   E+  E+L + L+ G   L V +I   GG  KT  A   ++++ V+ +FD
Sbjct: 157 PYVVEHNLVGLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQIFHHHKVRRHFD 216

Query: 241 CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIG-EDYQLKKSILRDYLTNKKYFIVLD 299
             AWV VS D   R +  DI  ++        I+   D QL + + R +L   K  IVLD
Sbjct: 217 RFAWVYVSQDCRRRHVWQDIFLNLSYKDENQRILSLRDEQLGEELHR-FLKRNKCLIVLD 275

Query: 300 DVFDDSEIWIDVEELLPDDENGSRVFITVTDPDL 333
           D++   + W  ++ + P  E GS + +T  + ++
Sbjct: 276 DIW-GKDAWDCLKHVFP-HETGSEIILTTRNKEV 307

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
297744819	597	unnamed protein product [Vitis vinifera]	0.705	0.474	0.274	1e-20
224138284	841	NBS resistance protein [Populus trichoca	0.713	0.340	0.286	1e-20
359489158	531	PREDICTED: putative disease resistance p	0.705	0.532	0.274	1e-20
357460001	942	Disease resistance protein [Medicago tru	0.581	0.247	0.276	1e-20
359489156	899	PREDICTED: probable disease resistance p	0.690	0.308	0.276	2e-20
147780806	597	hypothetical protein VITISV_008412 [Viti	0.705	0.474	0.271	6e-20
359489148	897	PREDICTED: probable disease resistance R	0.703	0.314	0.271	1e-19
224138292	916	nbs-lrr resistance protein [Populus tric	0.718	0.314	0.279	2e-19
297744817	543	unnamed protein product [Vitis vinifera]	0.718	0.530	0.269	4e-19
357459971	920	Disease resistance protein [Medicago tru	0.675	0.294	0.279	5e-19

>gi|297744819|emb|CBI38087.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 23/306 (7%)

Query: 43  SEIIVTTLLGKYEVDMARHLFQLLR--EDFDDSNISLPFLQLLDLEESDEEDVETADILE 100
           +E IVT  L K    +++  F L R  E  +  +I L +++   L+++D +      I  
Sbjct: 2   AESIVTVFLEKLTDLLSQEAFLLSRVEEQVNLLSIDLEWMRHF-LKDADAKRRYDPRIKL 60

Query: 101 ILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLP 160
            +  I D  +++E+ ID +   +  QQ    +      + L+  L ++I +I ++++++ 
Sbjct: 61  WVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIK 120

Query: 161 PGDNGFDI-----SEKSNEIIHLLSEGQP---RLDISHFERGREELFDLLIEGSSGLSVV 212
              + F +     +   NE++       P    +++   +   + +   L+ G    +VV
Sbjct: 121 AAKSTFVVETLPAASSPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVV 180

Query: 213 AILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSV 272
           +I+  GG  KT  A   YN+N V+  FDCHAW+ VS +Y  R +L  I        RV +
Sbjct: 181 SIVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGI------AVRVGI 234

Query: 273 IIGEDY-QLKKS----ILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
           +  E+  ++ +S     LRDYLT KKY IV+DD++ + E W  +    PD  NGSRV IT
Sbjct: 235 LSEEERSKMNESDLGNSLRDYLTTKKYLIVMDDMWRN-EAWDRLGLYFPDSVNGSRVLIT 293

Query: 328 VTDPDL 333
             + ++
Sbjct: 294 SRNKEI 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138284|ref|XP_002326564.1| NBS resistance protein [Populus trichocarpa] gi|222833886|gb|EEE72363.1| NBS resistance protein [Populus trichocarpa]

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 56/342 (16%)

Query: 31  NLTPLFQNLLTESEIIVTTLL--GKYEVDMARHLFQLLREDFDDSNISLPFLQLLD-LEE 87
            L PLF+N L         LL  G+ E+   R   + +R           FL++ D LEE
Sbjct: 12  KLAPLFENELQ--------LLRGGREEIVYVRGELERIR----------AFLRVADTLEE 53

Query: 88  SDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEA-------ESESSTNMA 140
           SDEE      +   ++ I D  HE+E+ +D  FT ++   ++          S    NM 
Sbjct: 54  SDEE------VKVWVKQIRDVAHETEDILDE-FTILLAHDHASGLYGLIHKMSCCIKNMK 106

Query: 141 LLVGLHTKIIDIRSRMQQLPPGD----NGFDISEKSNEIIHLLSEG-QPR---------L 186
               + ++I  I SR++ +  G       F ++E  +      S G Q R         +
Sbjct: 107 ARYRIASQIKAINSRIRNISDGHRRLRQKFCVAEHGSSST---STGWQDRREDALLLDMI 163

Query: 187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR 246
           D+   E+ + +L   L++G SG  VV++   GG  KT  A   Y++  VK +F  HAW+ 
Sbjct: 164 DLVGIEKRKSKLVGWLVDGRSGRVVVSLAGMGGLGKTTLAKQVYDDAEVKKHFSVHAWIT 223

Query: 247 VSLDYDFRRILDDIIKSVIPPSRVSV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303
           VS  Y    +L DI++ +    R  V   +  ++    KSI+++ L  ++Y IVLDDV+ 
Sbjct: 224 VSRSYKMEELLKDILQQLFAADRKPVPKNLESQNSSQLKSIIKEVLQKRRYLIVLDDVWH 283

Query: 304 DSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKI 345
            +E W  V+  LP +  GSRV +T  + DL  +  +E+  K+
Sbjct: 284 VNE-WDAVKYALPTNNCGSRVMLTTRNADLAFTSRIESEGKV 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489158|ref|XP_003633890.1| PREDICTED: putative disease resistance protein At1g50180-like [Vitis vinifera]

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 23/306 (7%)

Query: 43  SEIIVTTLLGKYEVDMARHLFQLLR--EDFDDSNISLPFLQLLDLEESDEEDVETADILE 100
           +E IVT  L K    +++  F L R  E  +  +I L +++   L+++D +      I  
Sbjct: 2   AESIVTVFLEKLTDLLSQEAFLLSRVEEQVNLLSIDLEWMRHF-LKDADAKRRYDPRIKL 60

Query: 101 ILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLP 160
            +  I D  +++E+ ID +   +  QQ    +      + L+  L ++I +I ++++++ 
Sbjct: 61  WVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIK 120

Query: 161 PGDNGFDI-----SEKSNEIIHLLSEGQP---RLDISHFERGREELFDLLIEGSSGLSVV 212
              + F +     +   NE++       P    +++   +   + +   L+ G    +VV
Sbjct: 121 AAKSTFVVETLPAASSPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVV 180

Query: 213 AILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSV 272
           +I+  GG  KT  A   YN+N V+  FDCHAW+ VS +Y  R +L  I        RV +
Sbjct: 181 SIVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGI------AVRVGI 234

Query: 273 IIGEDY-QLKKS----ILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
           +  E+  ++ +S     LRDYLT KKY IV+DD++ + E W  +    PD  NGSRV IT
Sbjct: 235 LSEEERSKMNESDLGNSLRDYLTTKKYLIVMDDMWRN-EAWDRLGLYFPDSVNGSRVLIT 293

Query: 328 VTDPDL 333
             + ++
Sbjct: 294 SRNKEI 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460001|ref|XP_003600282.1| Disease resistance protein [Medicago truncatula] gi|355489330|gb|AES70533.1| Disease resistance protein [Medicago truncatula]

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 38/271 (14%)

Query: 91  EDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMA----LLVGLH 146
           +DVE   I ++++ + +  +  E+ +D Y     QQ +    +  + ++     L + + 
Sbjct: 56  DDVEDKKIKDMIKQLIEASYHIEDVVDDYILLEEQQSSDPGCAAGAVDLVKTKILRLQIT 115

Query: 147 TKIIDIRSRMQQLP---PGDNGFDI------------SEKSNEIIHLLSEG---QPRLDI 188
            KI +I+SR++++      D+GF+I            + ++   +  L +        D+
Sbjct: 116 YKIQNIKSRIREIKETSAKDHGFNIQSSSDKPSSSSATNRNASFLQNLRDAPFYMDEADL 175

Query: 189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS 248
             FE  R++L DLL+EG +  +VV+I+  GG  KT  A   ++N  V  +FDCH W+ VS
Sbjct: 176 VGFEEPRDKLIDLLVEGRAERTVVSIVGMGGLGKTTIAKKVFDNQKVVKHFDCHVWITVS 235

Query: 249 LDYDFRRILDDIIKSVIPPSRVSVIIGED-----YQLKKSIL----RDYLTNKKYFIVLD 299
             Y+  ++L +I+  +          GED     +Q+ +  L    R+YL  K+Y IV D
Sbjct: 236 RPYNIEKLLREILLDIYKQQ------GEDPPQSLHQMDRKPLVDEVRNYLQGKRYVIVFD 289

Query: 300 DVFDDSEIWIDVEELLPDDENGSRVFITVTD 330
           DV+ DS  W D+E  + D++NG ++ IT  +
Sbjct: 290 DVW-DSHFWYDIEFAMIDNKNGCKILITTRN 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489156|ref|XP_003633889.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 147/300 (49%), Gaps = 23/300 (7%)

Query: 43  SEIIVTTLLGKYEVDMARHLFQLLR--EDFDDSNISLPFLQLLDLEESDEEDVETADILE 100
           +E IVT  L K    +++  F L R  E  +  +I L +++   L+++D +      I  
Sbjct: 2   AESIVTVFLEKLTDLLSQEAFLLSRVEEQVNLLSIDLEWMRQF-LKDADAKRRYDPRIKL 60

Query: 101 ILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLP 160
            +  I D  +++E+ ID +   +  QQ    +      + L+  L ++I +I ++++++ 
Sbjct: 61  WVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIK 120

Query: 161 PGDNGFDI-----SEKSNEIIHLLSEGQP---RLDISHFERGREELFDLLIEGSSGLSVV 212
              + F +     +   NE++       P    +++   +   + +   L+ G    +VV
Sbjct: 121 AAKSTFIVETLPAASWPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVV 180

Query: 213 AILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSV 272
           +I+  GG  KT  A   YN+N V+  FDCHAW+ VS +Y  R +L  +        RV +
Sbjct: 181 SIVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGV------AVRVGI 234

Query: 273 IIGEDY-QLKKS----ILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
           +  E+  ++ +S     LRDYLT KKY IV+DD++ + E W  +    PD  NGSRV IT
Sbjct: 235 LSEEERSKMNESDLGNSLRDYLTTKKYLIVMDDMWRN-EAWDRLGLYFPDSVNGSRVLIT 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780806|emb|CAN70484.1| hypothetical protein VITISV_008412 [Vitis vinifera]

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 149/306 (48%), Gaps = 23/306 (7%)

Query: 43  SEIIVTTLLGKYEVDMARHLFQLLR--EDFDDSNISLPFLQLLDLEESDEEDVETADILE 100
           +E IVT  L K    +++  F L R  E  +  +I L +++   L+++D +      I  
Sbjct: 2   AESIVTVFLEKLTDLLSQEAFLLSRVEEQVNLLSIDLEWMRHF-LKDADAKRRYDPRIKL 60

Query: 101 ILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLP 160
            +  I D  +++E+ ID +   +  QQ    +      + L+  L ++I +I ++++++ 
Sbjct: 61  WVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIK 120

Query: 161 PGDNGFDI-----SEKSNEIIHLLSEGQP---RLDISHFERGREELFDLLIEGSSGLSVV 212
              + F +     +   NE++       P    +++   +   + +   L+ G    +VV
Sbjct: 121 AAKSTFVVETLPAASSPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVV 180

Query: 213 AILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSV 272
           +I+  GG  KT  A   YN+N V+  FDCHAW+ VS +Y  R +L      +    RV +
Sbjct: 181 SIVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELL------LGXAVRVGI 234

Query: 273 IIGEDY-QLKKS----ILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
           +  E+  ++ +S     LRDYLT KKY IV+DD++   E W  +    PD  NGSRV IT
Sbjct: 235 LSEEERSKMNESDLGNSLRDYLTTKKYLIVMDDMW-RXEAWDRLGLYFPDSVNGSRVLIT 293

Query: 328 VTDPDL 333
             + ++
Sbjct: 294 SRNKEI 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera]

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 145/306 (47%), Gaps = 24/306 (7%)

Query: 43  SEIIVTTLLGKYEVDMARHLFQLLR--EDFDDSNISLPFLQLLDLEESDEEDVETADILE 100
           +E IVT  L K    +++  F L R  E     +  L +++L  L+++D +      I  
Sbjct: 2   AESIVTVFLEKLTDLLSKEAFLLSRVEEQVKLLSSELEWMRLF-LKDADAKRRYDPRIKL 60

Query: 101 ILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLP 160
            +  I D  +++E+ ID +   +  QQ    +      +  +  L ++I +I  +++++ 
Sbjct: 61  WVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLQFLKLRFVHKLESRIREINIKIEKIM 120

Query: 161 PGDNGFDI-----SEKSNEIIHLLSEGQP--RLDISHFERGREELFDLLIEGSSGLSVVA 213
              + + +     +  SNE +    +  P   +++   +   + +   L+ G    +VV+
Sbjct: 121 ANKSRYGVETLPAASSSNEAVPHKEKRAPIVEVNVVGIQEDAKSVKQNLLNGEMRRAVVS 180

Query: 214 ILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI 273
           I+  GG  KT  A   YN+N V+  FDCHAW+ VS +Y  R +L  +   V        I
Sbjct: 181 IVGMGGLGKTTLAKKVYNDNDVRQCFDCHAWIYVSQEYTIRELLLGVAVCV-------RI 233

Query: 274 IGEDYQLK------KSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
           + E+ + K         LRDYLT KKY IVLDD++ + E W  +    PD  NGSRV IT
Sbjct: 234 LSEEERSKMDESELGDRLRDYLTTKKYLIVLDDMWRN-EAWDRLGLYFPDSVNGSRVLIT 292

Query: 328 VTDPDL 333
             + ++
Sbjct: 293 SRNKEI 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138292|ref|XP_002326566.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222833888|gb|EEE72365.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 52/340 (15%)

Query: 31  NLTPLFQNLLTESEIIVTTLLGKYEVDMARHLFQLLREDFDDSNISLPFLQLLD-LEESD 89
            L PLF+N   E +++     G+ E+   R   + +R           FL++ D LEESD
Sbjct: 12  KLAPLFEN---ELQLLRG---GREEIVYVRGELERIR----------AFLRVADTLEESD 55

Query: 90  EEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEA-------ESESSTNMALL 142
           EE      +   ++ I D  HE+E+ +D  FT ++   ++          S    NM   
Sbjct: 56  EE------VKVWVKQIRDVAHETEDILDE-FTILLAHDHASGLYGLIHKMSCCIKNMKAR 108

Query: 143 VGLHTKIIDIRSRMQQLPPGD----NGFDISEKSNEIIHLLSEG-QPR---------LDI 188
             + ++I  + SR++ +  G       F ++E  +      S G Q R          D+
Sbjct: 109 YRIASQIKAMNSRIRNISDGHRRLRQKFFVAEHGSSSA---STGWQDRREDALLLDMTDL 165

Query: 189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS 248
              E  + +L   L++G SG  VV++   GG  KT  A   Y++  VK +F  HAW+ VS
Sbjct: 166 VGIEERKSKLVGWLVDGRSGREVVSLAGMGGLGKTTLAKQVYDDAEVKKHFSVHAWITVS 225

Query: 249 LDYDFRRILDDIIKSVIPPSRVSV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDS 305
             Y    +L DI++ +    R  V   +  ++    KSI+++ L  ++Y IVLDDV+  +
Sbjct: 226 RSYKMEELLKDILQQLFAADRKPVPKNLESQNSSQLKSIIKEVLQKRRYLIVLDDVWHVN 285

Query: 306 EIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKI 345
           E W  V+  LP +  GSRV +T  + DL  +  +E+  K+
Sbjct: 286 E-WDAVKYALPTNNCGSRVMLTTRNADLAFTSRIESEGKV 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744817|emb|CBI38085.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 144/301 (47%), Gaps = 13/301 (4%)

Query: 43  SEIIVTTLLGKYEVDMARHLFQLLREDFDDSNIS--LPFLQLLDLEESDEEDVETADILE 100
           +E IVT  L K    +++  F L R +     +S  L +++L  L+++D +      I  
Sbjct: 2   AESIVTFFLEKLTDLLSQEAFLLSRVEEQVKLLSNELEWMRLF-LKDADAKRRYDPRIKL 60

Query: 101 ILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQLP 160
            +  I D  +++E+ ID +   +  QQ    +      +  +  L ++I +I  +++++ 
Sbjct: 61  WVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRFVHKLESRIREINIKIEKIM 120

Query: 161 PGDNGFDI-----SEKSNEIIHLLSEGQP---RLDISHFERGREELFDLLIEGSSGLSVV 212
              + + +     +  SNE++       P    +++   +   + +   L+ G    +VV
Sbjct: 121 ANKSRYGVETLPAASSSNEVVPHKERRAPIVEEVNVVGIQEDAKSVKQNLLNGEMRRAVV 180

Query: 213 AILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSV 272
           +I+  GG  KT  A   YN+N V+  FDCHAW+ VS +Y  R +L  +   V   S    
Sbjct: 181 SIVGMGGLGKTTLAKKVYNDNDVRQCFDCHAWIYVSQEYTIRELLLGVAVCVRILSEEER 240

Query: 273 IIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPD 332
               +  L  S LRDYLT +KY IV+DD++ + E W  +    PD  NGSRV IT  + +
Sbjct: 241 SKMNESDLGNS-LRDYLTTRKYLIVMDDMWRN-EAWDRLGLYFPDSVNGSRVLITSRNKE 298

Query: 333 L 333
           +
Sbjct: 299 I 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459971|ref|XP_003600267.1| Disease resistance protein [Medicago truncatula] gi|355489315|gb|AES70518.1| Disease resistance protein [Medicago truncatula]

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 155/311 (49%), Gaps = 40/311 (12%)

Query: 58  MAR-HLFQLLREDFDD-SNISLPFLQLLDLEESDEE----------DVETADILEILEDI 105
           +AR HL  LL+E F+    +     +L D  ES E+          DVE   I ++ + +
Sbjct: 18  LARDHLLPLLKEAFNMIRGVPKEIAELKDELESIEDFINDADRRSDDVEDKKIKDMTKQL 77

Query: 106 NDFVHESEEAIDTYFTNIMQQQNSEAESESSTNM----ALLVGLHTKIIDIRSRMQQLPP 161
            +     E+ ID Y   + + Q+SE    ++ ++     L + +  KI +I S+++++  
Sbjct: 78  IETSFHIEDVIDDYIF-LEEHQSSEPGCAAAVDLLKTTKLRLQIAYKIQNINSQIREIKE 136

Query: 162 ---GDNGFDI------------SEKSNEIIHLLSEGQPRLDIS---HFERGREELFDLLI 203
               D+ FDI            + ++  +   L +    +D +    F+  R++L DLL+
Sbjct: 137 TSEKDHDFDIQSSLDKASSSSATNRNASLFQNLRDAPLYMDDADAVGFDVSRDKLIDLLV 196

Query: 204 EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII-K 262
           EG +  +VV+I+  GG  KT  A   ++N  V  +FDC  W+ VS  Y+  ++L DI+ +
Sbjct: 197 EGRAHRTVVSIVGMGGLGKTTLAKKVFDNQKVVKHFDCRLWITVSRPYNKEKLLKDILQQ 256

Query: 263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGS 322
              PP  +  +   D +L    +R+YL  K+Y +V DDV+ DS  W D+E  + D++NG 
Sbjct: 257 GKCPPQSLHQM---DGKLLVDEVRNYLQGKRYVVVFDDVW-DSHFWNDIEFSMIDNKNGC 312

Query: 323 RVFITVTDPDL 333
           ++ IT  + D+
Sbjct: 313 KILITTRNEDV 323

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.546	0.258	0.294	1.4e-12
UNIPROTKB|Q84UB1	928	Pi-ta "Pi-ta protein" [Oryza s	0.376	0.162	0.318	2.1e-10
UNIPROTKB|Q9AY26	928	Pi-ta "Pi-ta protein" [Oryza s	0.376	0.162	0.318	2.1e-10
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.411	0.178	0.297	2.1e-09
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.558	0.248	0.227	7.2e-09
TAIR|locus:2011982	857	AT1G50180 [Arabidopsis thalian	0.468	0.219	0.282	8.7e-09
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.548	0.242	0.252	1.2e-08
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.281	0.135	0.344	5e-08
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.558	0.246	0.237	7.2e-08
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.558	0.246	0.241	9.3e-08

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 71/241 (29%), Positives = 105/241 (43%)

Query:   107 DFVHESEEAIDTYFTNIMXXXXXXXXXXXXTNMALLVGLHTKIIDIRS---RMQQLPPGD 163
             D  ++ E+ +DTYF  +               +      +  + DIR+   R+  +    
Sbjct:    67 DIAYDIEDVLDTYFLKLEERSLRRGLLRLTNKIGKKRDAYNIVEDIRTLKRRILDITRKR 126

Query:   164 NGFDI---SEKSNEIIHLLSEGQ----PRLDISHFERGREE-----LFDLLIEGSSGLS- 210
               F I   +E   E I  +   Q    P +D      G E+     L  LL +     S 
Sbjct:   127 ETFGIGSFNEPRGENITNVRVRQLRRAPPVDQEELVVGLEDDVKILLVKLLSDNEKDKSY 186

Query:   211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS--VIPPS 268
             +++I   GG  KTA A   YN+  VK  FDC AW  VS +Y  R IL  II+S  ++   
Sbjct:   187 IISIFGMGGLGKTALARKLYNSGDVKRRFDCRAWTYVSQEYKTRDILIRIIRSLGIVSAE 246

Query:   269 RVSVI--IGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFI 326
              +  I    ED +L+   L   L  K Y +V+DDV+D  + W  ++  LP D  GS+V I
Sbjct:   247 EMEKIKMFEEDEELEV-YLYGLLEGKNYMVVVDDVWDP-DAWESLKRALPCDHRGSKVII 304

Query:   327 T 327
             T
Sbjct:   305 T 305

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q84UB1 Pi-ta "Pi-ta protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 179 (68.1 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 50/157 (31%), Positives = 84/157 (53%)

Query:   196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTY--NNNHVKFYFDCHAWVRVSLDYDF 253
             ++L   L +G   L V +I+ SGG  KT  A + Y  +   +   FDC A+VR     D 
Sbjct:   216 QKLVRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDM 275

Query:   254 RRILDDIIKSVIPPSR-VSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVE 312
              +IL D++  + P  +  S  + E  +L ++I R +L +K+YFI+++D++  S +W  V 
Sbjct:   276 TKILTDMLSQLRPQHQHQSSDVWEVDRLLETI-RTHLQDKRYFIIIEDLWASS-MWDIVS 333

Query:   313 ELLPDDENGSRVFITVT-DPDLLASLEMENGEKIRLD 348
               LPD+ + SR+ IT   +P  LA     +   I++D
Sbjct:   334 RGLPDNNSCSRILITTEIEPVALACCGYNSEHIIKID 370

GO:0006952 "defense response" evidence=IMP

UNIPROTKB|Q9AY26 Pi-ta "Pi-ta protein" [Oryza sativa (taxid:4530)]

 Score = 179 (68.1 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 50/157 (31%), Positives = 84/157 (53%)

Query:   196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTY--NNNHVKFYFDCHAWVRVSLDYDF 253
             ++L   L +G   L V +I+ SGG  KT  A + Y  +   +   FDC A+VR     D 
Sbjct:   216 QKLVRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDM 275

Query:   254 RRILDDIIKSVIPPSR-VSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVE 312
              +IL D++  + P  +  S  + E  +L ++I R +L +K+YFI+++D++  S +W  V 
Sbjct:   276 TKILTDMLSQLRPQHQHQSSDVWEVDRLLETI-RTHLQDKRYFIIIEDLWASS-MWDIVS 333

Query:   313 ELLPDDENGSRVFITVT-DPDLLASLEMENGEKIRLD 348
               LPD+ + SR+ IT   +P  LA     +   I++D
Sbjct:   334 RGLPDNNSCSRILITTEIEPVALACCGYNSEHIIKID 370

GO:0006952 "defense response" evidence=IMP

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 53/178 (29%), Positives = 86/178 (48%)

Query:   159 LPPGDNGFDISEKSN--EIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVAILD 216
             LPP D+G D    +N  E     SE      +   +  + +L   L+       VVA++ 
Sbjct:   146 LPPIDDG-DAKWVNNISESSLFFSENS----LVGIDAPKGKLIGRLLSPEPQRIVVAVVG 200

Query:   217 SGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE 276
              GG  KT  +A+ + +  V+ +F+ +AWV +S  Y    +   +IK     +    I  E
Sbjct:   201 MGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQ-IPAE 259

Query:   277 DYQL--KKSI--LRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTD 330
              Y L  ++ +  L +YL +K+Y +VLDDV+    +W ++   LPD   GSRV +T  D
Sbjct:   260 LYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTG-LWREISIALPDGIYGSRVMMTTRD 316

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 56/246 (22%), Positives = 110/246 (44%)

Query:    98 ILEILEDINDFVHESEEAIDTYFTNIMXXXXXXXXXXXXTNMALLVGLH----------- 146
             +   LED+ D V ++E+ I++Y  N +                 L   H           
Sbjct:    58 VRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKNHVRRLACFLTDRHKVASDIEGITK 117

Query:   147 --TKII-DIRSR--MQQLPPGDNGFDISEKSNEIIHLLSEGQPRLDISHFERGREELFDL 201
               +K+I +++S    QQ+  G     + +   EI           D+   E+  EEL   
Sbjct:   118 RISKVIGEMQSLGIQQQIIDGGRSLSLQDIQREIRQTFPNSSES-DLVGVEQSVEELVGP 176

Query:   202 LIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII 261
             ++E    + VV+I   GG  KT  A   ++++ V+ +FD  AWV VS  +  + +   I+
Sbjct:   177 MVE-IDNIQVVSISGMGGIGKTTLARQIFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRIL 235

Query:   262 KSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENG 321
             + + P     ++  ++Y ++  + +  L   +Y +VLDDV+ + + W  ++E+ P  + G
Sbjct:   236 QELRPHDG-EILQMDEYTIQGKLFQ-LLETGRYLVVLDDVWKEED-WDRIKEVFPR-KRG 291

Query:   322 SRVFIT 327
              ++ +T
Sbjct:   292 WKMLLT 297

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 58/205 (28%), Positives = 96/205 (46%)

Query:   143 VGLHT---KIIDIRSRMQQLPPGDNGFDISEK-SNEIIHL---LSEGQPRLD--ISH--- 190
             V LH+   +I +I SR+ ++      F I E    E + L   L E +      + H   
Sbjct:   106 VSLHSVGSEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSLREQRQSFPYVVEHNLV 165

Query:   191 -FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL 249
               E+  E+L + L+ G   L V +I   GG  KT  A   ++++ V+ +FD  AWV VS 
Sbjct:   166 GLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQIFHHHKVRRHFDRFAWVYVSQ 225

Query:   250 DYDFRRILDDIIKSVIPPSRVSVIIG-EDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIW 308
             D   R +  DI  ++        I+   D QL + + R +L   K  IVLDD++   + W
Sbjct:   226 DCRRRHVWQDIFLNLSYKDENQRILSLRDEQLGEELHR-FLKRNKCLIVLDDIWG-KDAW 283

Query:   309 IDVEELLPDDENGSRVFITVTDPDL 333
               ++ + P  E GS + +T  + ++
Sbjct:   284 DCLKHVFPH-ETGSEIILTTRNKEV 307

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 59/234 (25%), Positives = 108/234 (46%)

Query:   102 LEDINDFVHESEEAIDTYFTN-IMXXXXXXXXXXXXTNMAL-LVGLHTKIIDIRSRMQQL 159
             LE+I +  +++E+ I+ +     +              +AL +  +  +I  +   MQ L
Sbjct:    67 LEEIKEITYDAEDIIEIFLLKGSVNMRSLACFPGGRREIALQITSISKRISKVIQVMQNL 126

Query:   160 P-PGD--NGFDIS---EKSNEIIHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSVVA 213
                 D  +G D     E+  E+ H  S  +   ++   E+  E+L + L+ G+     V+
Sbjct:   127 GIKSDIMDGVDSHAQLERKRELRHTFSS-ESESNLVGLEKNVEKLVEELV-GNDSSHGVS 184

Query:   214 ILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI 273
             I   GG  KT  A   ++++ VK +FD  AWV VS ++  + +   I+ ++ P  + S +
Sbjct:   185 ITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDL 244

Query:   274 IGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFIT 327
               +D Q K   L   L  KK  IV DD++   E W  +  + P+ + G +V +T
Sbjct:   245 PEDDIQKK---LFQLLETKKALIVFDDLWK-REDWYRIAPMFPERKAGWKVLLT 294

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 42/122 (34%), Positives = 63/122 (51%)

Query:   211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPS-- 268
             +++I   GG  KTA A   YN+  VK  F+  AW  VS +Y    IL  II+S+   S  
Sbjct:   187 IISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGE 246

Query:   269 ---RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVF 325
                ++     E+ ++    L   L  KKY +V+DD+++  E W  ++  LP +  GSRV 
Sbjct:   247 ELEKIRKFAEEELEV---YLYGLLEGKKYLVVVDDIWE-REAWDSLKRALPCNHEGSRVI 302

Query:   326 IT 327
             IT
Sbjct:   303 IT 304

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 59/248 (23%), Positives = 108/248 (43%)

Query:    98 ILEILEDINDFVHESEEAIDTYFTNIMXXXXXXXXXXXXTNMALLVGLH---------TK 148
             +   LED+ D V ++E+ I++Y  N +                 L   H         TK
Sbjct:    58 VRNFLEDVKDLVFDAEDIIESYVLNKLSGKGKGVKKHVRRLACFLTDRHKVASDIEGITK 117

Query:   149 -IIDIRSRMQ-----QLPPGDNGFDISEKSN---EIIHLLSEGQPRLDISHFERGREELF 199
              I ++   MQ     Q+  G     + E+     EI     +     D+   E+  +EL 
Sbjct:   118 RISEVIGEMQSFGIQQIIDGGRSLSLQERQRVQREIRQTYPDSSES-DLVGVEQSVKELV 176

Query:   200 DLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDD 259
               L+E      VV+I   GG  KT  A   ++++ V+ +FD  AWV VS  +  + +   
Sbjct:   177 GHLVENDVH-QVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQR 235

Query:   260 IIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDE 319
             I++  + P    ++  ++Y L++ + +  L   +Y +VLDDV+   E W  ++ + P  +
Sbjct:   236 ILQE-LQPHDGDILQMDEYALQRKLFQ-LLEAGRYLVVLDDVWK-KEDWDVIKAVFPR-K 291

Query:   320 NGSRVFIT 327
              G ++ +T
Sbjct:   292 RGWKMLLT 299

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 60/248 (24%), Positives = 107/248 (43%)

Query:    98 ILEILEDINDFVHESEEAIDTYFTNIMXXXXXXXXXXXXTNMALLVGLH---------TK 148
             +   LED+ D V ++E+ I++Y  N +                 L   H         TK
Sbjct:    58 VRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITK 117

Query:   149 -IIDIRSRMQ-----QLPPGDNGFDISEKSN---EIIHLLSEGQPRLDISHFERGREELF 199
              I D+   MQ     Q+  G     + E+     EI     +     D+   E+  EEL 
Sbjct:   118 RISDVIGEMQSFGIQQIIDGVRSLSLQERQRVQREIRQTYPDSSES-DLVGVEQSVEELV 176

Query:   200 DLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDD 259
               L+E      VV+I   GG  KT  A   ++++ V+ +FD  AWV VS  +  + +   
Sbjct:   177 GHLVENDI-YQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTLKHVWQR 235

Query:   260 IIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDE 319
             I++  + P   +++  ++  L+  + +  L   +Y +VLDDV+   E W  ++ + P  +
Sbjct:   236 ILQE-LQPHDGNILQMDESALQPKLFQ-LLETGRYLLVLDDVWK-KEDWDRIKAVFPR-K 291

Query:   320 NGSRVFIT 327
              G ++ +T
Sbjct:   292 RGWKMLLT 299

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	401
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	3e-17

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 12/175 (6%)

Query: 196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR 255
           E L + L+E S  L VV I+  GG  KT  A   YN++ V  +FD  AWV VS  Y   R
Sbjct: 6   EALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFR 65

Query: 256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELL 315
           +  DI++ +       V   ++       +++ L  K++ +VLDDV  +   W  +    
Sbjct: 66  LQKDILQELGLDDSDWV--EKNESELAVKIKEALLRKRFLLVLDDV-WEKNDWDKIGVPF 122

Query: 316 PDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILH 370
           PD ENGSRV +T     +   +     +   ++S+           E+W+ F   
Sbjct: 123 PDGENGSRVIVTTRSESVAGRM-GGTSKPHEVESL--------EPEESWELFSNK 168

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.19
PF05729	166	NACHT: NACHT domain	99.16
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.07
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.05
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.93
PRK06893	229	DNA replication initiation factor; Validated	98.9
PRK04841	903	transcriptional regulator MalT; Provisional	98.9
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.83
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.82
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.79
PRK13342	413	recombination factor protein RarA; Reviewed	98.75
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.72
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.68
PF13173	128	AAA_14: AAA domain	98.65
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.65
PTZ00202	550	tuzin; Provisional	98.64
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.63
PRK12402	337	replication factor C small subunit 2; Reviewed	98.61
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.6
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.57
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.57
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.56
cd01128	249	rho_factor Transcription termination factor rho is	98.53
PRK08727	233	hypothetical protein; Validated	98.53
PRK13341	725	recombination factor protein RarA/unknown domain f	98.52
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.51
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.51
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.51
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.5
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.5
PLN03025	319	replication factor C subunit; Provisional	98.48
PRK04195	482	replication factor C large subunit; Provisional	98.46
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.46
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.45
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.41
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.41
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.4
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.4
PRK09376	416	rho transcription termination factor Rho; Provisio	98.4
KOG2028	554	consensus ATPase related to the helicase subunit o	98.39
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.37
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.37
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.36
PRK08084	235	DNA replication initiation factor; Provisional	98.34
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.32
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.32
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.32
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.31
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.29
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.29
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.28
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.25
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.24
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.24
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.24
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.24
TIGR00767	415	rho transcription termination factor Rho. Members	98.2
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.2
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.19
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.19
CHL00181	287	cbbX CbbX; Provisional	98.19
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.18
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.16
PRK09087	226	hypothetical protein; Validated	98.15
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.13
PHA02544	316	44 clamp loader, small subunit; Provisional	98.12
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.11
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.1
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.09
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.07
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.06
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.06
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.04
PRK05642	234	DNA replication initiation factor; Validated	98.03
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.01
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.0
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.0
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.99
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.99
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.97
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.97
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.96
PF00004	132	AAA: ATPase family associated with various cellula	97.93
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.93
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.93
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.92
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.92
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.91
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.9
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.89
smart00382	148	AAA ATPases associated with a variety of cellular	97.89
PRK08116	268	hypothetical protein; Validated	97.88
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.83
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.82
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.82
PRK06620	214	hypothetical protein; Validated	97.82
PRK08181	269	transposase; Validated	97.79
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.78
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.78
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.76
PRK12422	445	chromosomal replication initiation protein; Provis	97.75
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.7
CHL00176	638	ftsH cell division protein; Validated	97.69
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.66
CHL00095	821	clpC Clp protease ATP binding subunit	97.65
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.63
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.61
PRK10865	857	protein disaggregation chaperone; Provisional	97.61
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.61
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.6
PRK06526	254	transposase; Provisional	97.58
PRK08118	167	topology modulation protein; Reviewed	97.58
COG3899	849	Predicted ATPase [General function prediction only	97.58
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.57
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.56
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.55
PRK12377	248	putative replication protein; Provisional	97.55
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.55
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.54
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.53
PRK08939	306	primosomal protein DnaI; Reviewed	97.53
PRK12608	380	transcription termination factor Rho; Provisional	97.52
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.52
PRK10865	857	protein disaggregation chaperone; Provisional	97.51
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	97.48
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.45
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.45
PRK09183	259	transposase/IS protein; Provisional	97.43
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.43
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	97.43
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.4
PRK07952	244	DNA replication protein DnaC; Validated	97.39
PRK07399	314	DNA polymerase III subunit delta'; Validated	97.38
PRK10536	262	hypothetical protein; Provisional	97.37
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.36
PRK05707	328	DNA polymerase III subunit delta'; Validated	97.35
COG3903	414	Predicted ATPase [General function prediction only	97.35
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.33
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.32
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.31
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.29
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.28
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.28
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	97.27
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.27
PHA00729	226	NTP-binding motif containing protein	97.26
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.26
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.26
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.24
PRK06921	266	hypothetical protein; Provisional	97.21
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.21
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.18
CHL00095	821	clpC Clp protease ATP binding subunit	97.18
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.16
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.15
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.13
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.12
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	97.12
PRK06835	329	DNA replication protein DnaC; Validated	97.11
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.1
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.1
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	97.09
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	97.08
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.08
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.08
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.08
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.06
PRK05541	176	adenylylsulfate kinase; Provisional	97.06
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.06
PRK07261	171	topology modulation protein; Provisional	97.04
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.03
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.02
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.01
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.0
PRK04296	190	thymidine kinase; Provisional	97.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.99
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.98
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.97
PRK06696	223	uridine kinase; Validated	96.96
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.96
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.95
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.95
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.94
CHL00195	489	ycf46 Ycf46; Provisional	96.93
PRK11608	326	pspF phage shock protein operon transcriptional ac	96.93
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	96.93
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.92
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.88
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.86
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.86
cd03246	173	ABCC_Protease_Secretion This family represents the	96.85
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	96.85
PRK09354	349	recA recombinase A; Provisional	96.85
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.85
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	96.84
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.84
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	96.83
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.83
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.83
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.81
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.8
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	96.78
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.78
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.77
PRK06067	234	flagellar accessory protein FlaH; Validated	96.76
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	96.76
PRK07667	193	uridine kinase; Provisional	96.75
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.75
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.75
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.72
PRK15455	644	PrkA family serine protein kinase; Provisional	96.72
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.72
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.72
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.71
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.71
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	96.7
PRK13695	174	putative NTPase; Provisional	96.69
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.69
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.68
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.68
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.68
PTZ00035	337	Rad51 protein; Provisional	96.68
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.67
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.66
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.66
PRK08769	319	DNA polymerase III subunit delta'; Validated	96.64
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.64
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.63
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.62
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.62
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	96.62
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.62
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.61
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.61
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.6
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.6
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.59
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.59
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.59
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.58
PRK06762	166	hypothetical protein; Provisional	96.58
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.58
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.57
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.57
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.57
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.56
PRK00625	173	shikimate kinase; Provisional	96.56
PRK14974	336	cell division protein FtsY; Provisional	96.56
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.56
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.55
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.55
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.55
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.55
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	96.55
KOG1514	767	consensus Origin recognition complex, subunit 1, a	96.55
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.54
TIGR00959	428	ffh signal recognition particle protein. This mode	96.54
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.53
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.53
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.53
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	96.53
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.52
PRK05022	509	anaerobic nitric oxide reductase transcription reg	96.52
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.5
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.5
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.49
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.48
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	96.47
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.47
PRK08699	325	DNA polymerase III subunit delta'; Validated	96.47
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	96.46
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.45
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.44
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.44
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.44
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.43
PRK14527	191	adenylate kinase; Provisional	96.43
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.42
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	96.42
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.41
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	96.41
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.4
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.4
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.4
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.4
PRK04132	846	replication factor C small subunit; Provisional	96.4
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.4
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.4
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.39
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	96.39
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.39
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.38
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.36
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.36
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	96.36
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.36
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.36
PRK06871	325	DNA polymerase III subunit delta'; Validated	96.36
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.35
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.35
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.35
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.34
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.34
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.33
PRK00279	215	adk adenylate kinase; Reviewed	96.33
PF14516	331	AAA_35: AAA-like domain	96.33
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.33
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.32
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.31
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.31
PRK06964	342	DNA polymerase III subunit delta'; Validated	96.31
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.3
PRK08233	182	hypothetical protein; Provisional	96.3
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	96.3
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.29
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.29
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.29
PTZ00301	210	uridine kinase; Provisional	96.28
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.26
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.26
PRK10908	222	cell division protein FtsE; Provisional	96.25
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	96.25
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.24
COG0488	530	Uup ATPase components of ABC transporters with dup	96.23
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	96.23
PRK10867	433	signal recognition particle protein; Provisional	96.22
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.22
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.21
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	96.21
PRK07993	334	DNA polymerase III subunit delta'; Validated	96.21
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.21
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.2
PRK06090	319	DNA polymerase III subunit delta'; Validated	96.2
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	96.19
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.19
PHA02244	383	ATPase-like protein	96.19
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	96.19
PRK05480	209	uridine/cytidine kinase; Provisional	96.18
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.18
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.18
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	96.17
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.17
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.17
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.17
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.17
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.17
KOG0924	1042	consensus mRNA splicing factor ATP-dependent RNA h	96.16
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.16
PRK15064	530	ABC transporter ATP-binding protein; Provisional	96.14
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.14
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.14
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.13
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.13
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	96.13
PTZ00088	229	adenylate kinase 1; Provisional	96.12
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.12
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.12
PRK13537	306	nodulation ABC transporter NodI; Provisional	96.11
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	96.1
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.1
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	96.1
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.1
PRK06547	172	hypothetical protein; Provisional	96.08
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.08
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.05
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.05
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.05
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.04
PRK14528	186	adenylate kinase; Provisional	96.04
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.04
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.04
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.03
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.03
PRK03839	180	putative kinase; Provisional	96.01
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	96.01
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.01
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.0
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	95.99
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.99
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.99
PRK08533	230	flagellar accessory protein FlaH; Reviewed	95.99
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.98
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	95.98
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.97
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.97
PRK13536	340	nodulation factor exporter subunit NodI; Provision	95.96
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.96
PTZ00494	664	tuzin-like protein; Provisional	95.95
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	95.95
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.94
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.93
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.93
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.93
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	95.93
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.92
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.91
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.91
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	95.9
PRK13546	264	teichoic acids export protein ATP-binding subunit;	95.89
PRK09984	262	phosphonate/organophosphate ester transporter subu	95.89
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	95.89
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.89
PRK10938	490	putative molybdenum transport ATP-binding protein	95.88
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	95.87
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	95.87
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.87
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.87
cd03299	235	ABC_ModC_like Archeal protein closely related to M	95.87
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.87
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	95.87
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	95.86
COG2842	297	Uncharacterized ATPase, putative transposase [Gene	95.86
PRK09519	790	recA DNA recombination protein RecA; Reviewed	95.85
PRK13409	590	putative ATPase RIL; Provisional	95.85
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	95.85
COG0488	530	Uup ATPase components of ABC transporters with dup	95.84
PRK11823	446	DNA repair protein RadA; Provisional	95.84
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.84
KOG0927	614	consensus Predicted transporter (ABC superfamily)	95.84
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.83
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	95.82
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	95.82
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.82
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	95.82
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	95.8
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.79
PRK14738	206	gmk guanylate kinase; Provisional	95.79
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	95.78
PRK13409	590	putative ATPase RIL; Provisional	95.78
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	95.78
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	95.77
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.76
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.75
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	95.75
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	95.75
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.75
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.74
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	95.73
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	95.72
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.72
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.72
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	95.71
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.71
PRK04040	188	adenylate kinase; Provisional	95.7
PRK11147	635	ABC transporter ATPase component; Reviewed	95.69
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	95.68
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	95.68
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	95.68
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.68
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	95.68
PRK13531	498	regulatory ATPase RavA; Provisional	95.67
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	95.67
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.67
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	95.67
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	95.64
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	95.64
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	95.64
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	95.64
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.64
PRK00131	175	aroK shikimate kinase; Reviewed	95.63
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	95.63
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	95.63
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	95.63
PRK14526	211	adenylate kinase; Provisional	95.63
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	95.62
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	95.62
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	95.62
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	95.62
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	95.6
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	95.6
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	95.6
PRK05973	237	replicative DNA helicase; Provisional	95.59
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	95.59
PRK05439	311	pantothenate kinase; Provisional	95.58
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	95.56
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	95.56
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	95.55
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	95.55
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.54
PRK04328	249	hypothetical protein; Provisional	95.54
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.54
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	95.53
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	95.53
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.53
PRK08149	428	ATP synthase SpaL; Validated	95.51
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.51
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.51
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.51
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	95.5
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	95.49
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	95.48
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	95.48
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	95.47
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.47
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	95.47
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	95.47
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	95.46

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=3e-40  Score=350.48  Aligned_cols=327  Identities=21%  Similarity=0.292  Sum_probs=255.6

Q ss_pred             HHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH----hHHHhchhhcCCCcccchhHHHHHHHHHHHHHHhHHHHHhhh
Q 015752           46 IVTTLLGKYEVDMAR--HLFQLLREDFDDSNISL----PFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTY  119 (401)
Q Consensus        46 ~v~~~l~kl~~~l~~--~~~~~~~~~l~~L~~el----~~L~~ae~~~~~~~~~~~~~v~~Wl~~lr~~a~d~eD~lD~~  119 (401)
                      .++..++|+.+.+.+  ..+.+.++++..|++.|    +++++++..+  ...   ..+..|.+.+++++|++||+++.+
T Consensus         4 ~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~--~~~---~~~~~~~e~~~~~~~~~e~~~~~~   78 (889)
T KOG4658|consen    4 CVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR--DDL---ERRVNWEEDVGDLVYLAEDIIWLF   78 (889)
T ss_pred             EEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc--chH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456677777666  66777778888888888    9999999988  666   889999999999999999999999


Q ss_pred             hhhhhhccC------------ccc-hhcccchhhhHHHHHHHHHHHHHHhhccCCCCCCCccCCCCccccccCCCCCCC-
Q 015752          120 FTNIMQQQN------------SEA-ESESSTNMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPR-  185 (401)
Q Consensus       120 ~~~~~~~~~------------~~~-~~~~~~~~~~r~~i~~~i~~l~~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~-  185 (401)
                      ..+...++.            ..| ...+...+...+.+.+++..+...++.+..+.. +..... +......+.+.+. 
T Consensus        79 ~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~~~-~~~~~~~~e~~~~~  156 (889)
T KOG4658|consen   79 LVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVVGE-SLDPREKVETRPIQ  156 (889)
T ss_pred             HHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-eecccc-cccchhhcccCCCC
Confidence            887766431            112 222233334445566666666666666543321 111100 0000111122222 


Q ss_pred             --CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccC-cccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 --LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNH-VKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 --~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                        .. ||.+..++++.+.|..++.  .+++|+||||+||||||++++|+.. ++++|+.++||++|+.++...++++|+.
T Consensus       157 ~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~  233 (889)
T KOG4658|consen  157 SESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE  233 (889)
T ss_pred             cccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence              33 9999999999999998654  8999999999999999999999987 9999999999999999999999999999


Q ss_pred             HcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhh-chhC
Q 015752          263 SVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLAS-LEME  340 (401)
Q Consensus       263 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~-~~~~  340 (401)
                      .++....   .+.. ...+++..|.+.|++|||||||||||+ ..+|+.+..++|...+||+|++|||++.|+.. +   
T Consensus       234 ~l~~~~~---~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m---  306 (889)
T KOG4658|consen  234 RLGLLDE---EWEDKEEDELASKLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAM---  306 (889)
T ss_pred             HhccCCc---ccchhhHHHHHHHHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhccc---
Confidence            9987543   2333 557999999999999999999999999 99999999999999899999999999999999 5   


Q ss_pred             CCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          341 NGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       341 ~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      +.... +++      +|  +++|||.||++.+|..+..+.   +.++++|++|| +|+|.++
T Consensus       307 ~~~~~~~v~------~L--~~~eaW~LF~~~v~~~~~~~~---~~i~~lak~v~~kC~GLPL  357 (889)
T KOG4658|consen  307 GVDYPIEVE------CL--TPEEAWDLFQKKVGPNTLGSH---PDIEELAKEVAEKCGGLPL  357 (889)
T ss_pred             cCCcccccc------cc--CccccHHHHHHhhcccccccc---ccHHHHHHHHHHHhCChHH
Confidence            44555 999      99  999999999999997654443   33899999999 9999875

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.97  E-value=8.3e-31  Score=249.11  Aligned_cols=194  Identities=29%  Similarity=0.466  Sum_probs=152.6

Q ss_pred             ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC
Q 015752          191 FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV  270 (401)
Q Consensus       191 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~  270 (401)
                      ||.++++|.++|.....+.++|+|+||||+||||||..++++..++.+|+.++|+.++...+...++..|+.+++.....
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~   80 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS   80 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            68899999999998667899999999999999999999999766999999999999999988899999999999887432


Q ss_pred             ccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhCCCcce-ecc
Q 015752          271 SVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKI-RLD  348 (401)
Q Consensus       271 ~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~-~l~  348 (401)
                      .  ... +...+...+.+.|+++++||||||||+ ...|+.+...++....||+||||||+..++..+  ...... +|+
T Consensus        81 ~--~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~--~~~~~~~~l~  155 (287)
T PF00931_consen   81 I--SDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSL--GGTDKVIELE  155 (287)
T ss_dssp             S--SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTH--HSCEEEEECS
T ss_pred             c--ccccccccccccchhhhccccceeeeeeecc-ccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            1  122 788899999999999999999999999 889999998888777899999999999988776  122445 999


Q ss_pred             cccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          349 SVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       349 ~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                            +|  +++||++||.+.++...   ...++.+.+++++|+ +|+|.++
T Consensus       156 ------~L--~~~ea~~L~~~~~~~~~---~~~~~~~~~~~~~i~~~c~glPL  197 (287)
T PF00931_consen  156 ------PL--SEEEALELFKKRAGRKE---SESPEDLEDLAKEIVEKCGGLPL  197 (287)
T ss_dssp             ------S----HHHHHHHHHHHHTSHS-------TTSCTHHHHHHHHTTT-HH
T ss_pred             ------cc--ccccccccccccccccc---ccccccccccccccccccccccc
Confidence                  99  99999999999997533   122345578899999 9999864

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.93  E-value=1.8e-24  Score=240.07  Aligned_cols=190  Identities=17%  Similarity=0.198  Sum_probs=148.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc---CCC-----------C
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV---SLD-----------Y  251 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~  251 (401)
                      .++||++..++++..+|..+....++|+|+||||+||||||+.+|+  ++..+|+..+|+..   +..           +
T Consensus       184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~  261 (1153)
T PLN03210        184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDY  261 (1153)
T ss_pred             ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccccc
Confidence            6899999999999999876667899999999999999999999999  78889998888742   111           1


Q ss_pred             C-HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCC
Q 015752          252 D-FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTD  330 (401)
Q Consensus       252 ~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~  330 (401)
                      + ...+..+++..+.....    ....  . ...+++.|+++|+||||||||+ ...|+.+.......++||+||||||+
T Consensus       262 ~~~~~l~~~~l~~il~~~~----~~~~--~-~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~~~GsrIIiTTrd  333 (1153)
T PLN03210        262 NMKLHLQRAFLSEILDKKD----IKIY--H-LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWFGSGSRIIVITKD  333 (1153)
T ss_pred             chhHHHHHHHHHHHhCCCC----cccC--C-HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccCCCCcEEEEEeCc
Confidence            1 12344455555433211    1110  1 1457788999999999999999 99999998776666789999999999


Q ss_pred             hhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          331 PDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       331 ~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      ..++..+   ...++ +++      .|  ++++||+||+++|+..    ...++.+++++++|| +|+|.++
T Consensus       334 ~~vl~~~---~~~~~~~v~------~l--~~~ea~~LF~~~Af~~----~~~~~~~~~l~~~iv~~c~GLPL  390 (1153)
T PLN03210        334 KHFLRAH---GIDHIYEVC------LP--SNELALEMFCRSAFKK----NSPPDGFMELASEVALRAGNLPL  390 (1153)
T ss_pred             HHHHHhc---CCCeEEEec------CC--CHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHhCCCcH
Confidence            9999876   55667 999      99  9999999999999852    123457899999999 9999764

syringae 6; Provisional

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.19  E-value=9.4e-10  Score=109.37  Aligned_cols=175  Identities=16%  Similarity=0.144  Sum_probs=114.2

Q ss_pred             CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      ..++||++++++|...|...  +.....+.|+|++|+|||++++.++++.......-..++++.....+...++..|+.+
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~  109 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ  109 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence            67999999999999998542  3344567899999999999999999843222212345666666666788899999999


Q ss_pred             cCCCCCCccccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-C----chhHHHHHhhCCCCC-CCcEEEEecCChhHH
Q 015752          264 VIPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-D----SEIWIDVEELLPDDE-NGSRVFITVTDPDLL  334 (401)
Q Consensus       264 l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~----~~~~~~l~~~l~~~~-~gs~iivTTR~~~v~  334 (401)
                      +.....   .... +...+...+.+.+.  +++.+||||+++. .    .+.+..+...+.... .+-.+|.++....+.
T Consensus       110 l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~  186 (394)
T PRK00411        110 LFGHPP---PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL  186 (394)
T ss_pred             hcCCCC---CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence            876311   1112 56667777777775  4678999999976 2    223344433332221 122356666555433


Q ss_pred             hhch----hC-CCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          335 ASLE----ME-NGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       335 ~~~~----~~-~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ....    .. ....+.++      |+  +.++..+++..++
T Consensus       187 ~~l~~~~~s~~~~~~i~f~------py--~~~e~~~il~~r~  220 (394)
T PRK00411        187 YILDPRVKSVFRPEEIYFP------PY--TADEIFDILKDRV  220 (394)
T ss_pred             hhcCHHHHhcCCcceeecC------CC--CHHHHHHHHHHHH
Confidence            3220    00 22334788      99  9999999999887

>PF05729 NACHT: NACHT domain

Probab=99.16  E-value=4.2e-10  Score=97.38  Aligned_cols=145  Identities=17%  Similarity=0.229  Sum_probs=88.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHH---HHHHHHHHHcCCCCCCccccCcCHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFR---RILDDIIKSVIPPSRVSVIIGEDYQLKK  282 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~  282 (401)
                      +++.|+|.+|+||||+++.++........    +...+|++.+......   .+...|..+.....      . ....  
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~-~~~~--   71 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI------A-PIEE--   71 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch------h-hhHH--
Confidence            47899999999999999999875333222    4567777765533322   33333433332221      1 1111  


Q ss_pred             HHHHHHc-CCceEEEEEeCCCC-C--ch-----hHHH-HHhhCCC-CCCCcEEEEecCChhHHhhchhCCCcce-ecccc
Q 015752          283 SILRDYL-TNKKYFIVLDDVFD-D--SE-----IWID-VEELLPD-DENGSRVFITVTDPDLLASLEMENGEKI-RLDSV  350 (401)
Q Consensus       283 ~~l~~~L-~~kr~LlVlDdv~~-~--~~-----~~~~-l~~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~~~-~l~~~  350 (401)
                       .+...+ +.++++||||++.. .  ..     .+.. +...++. ..+++++|||||..........-..... .++  
T Consensus        72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~--  148 (166)
T PF05729_consen   72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELE--  148 (166)
T ss_pred             -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEEC--
Confidence             222222 57899999999976 1  11     1222 3333433 2568999999999876322211133344 999  


Q ss_pred             cCCCCCCCChHHHHHHHHHhhC
Q 015752          351 LFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       351 ~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                          +|  ++++..+++.+...
T Consensus       149 ----~~--~~~~~~~~~~~~f~  164 (166)
T PF05729_consen  149 ----PF--SEEDIKQYLRKYFS  164 (166)
T ss_pred             ----CC--CHHHHHHHHHHHhh
Confidence                99  99999999988763

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.07  E-value=6.2e-09  Score=102.39  Aligned_cols=175  Identities=17%  Similarity=0.079  Sum_probs=109.0

Q ss_pred             CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcc-cc--c-CeEEEEEcCCCCCHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-FY--F-DCHAWVRVSLDYDFRRILDD  259 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F-~~~~wv~vs~~~~~~~~~~~  259 (401)
                      ..++||+.++++|...|..  .+.....+.|+|++|+|||++++.++++..-. ..  . -..+|++.....+...++..
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~   94 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE   94 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence            6799999999999999864  23344578899999999999999999742110 11  1 14567777776677889999


Q ss_pred             HHHHcCC---CCCCccccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-C---chhHHHHHhh--CCCCC-CCcEEEE
Q 015752          260 IIKSVIP---PSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-D---SEIWIDVEEL--LPDDE-NGSRVFI  326 (401)
Q Consensus       260 i~~~l~~---~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~---~~~~~~l~~~--l~~~~-~gs~iiv  326 (401)
                      |+.++..   ..+    ... +..++...+.+.+.  +++++||||+++. .   .+....+...  ..... ....+|.
T Consensus        95 i~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~  170 (365)
T TIGR02928        95 LANQLRGSGEEVP----TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG  170 (365)
T ss_pred             HHHHHhhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence            9999842   211    111 44555566666653  5688999999977 1   1112233322  11111 2234455


Q ss_pred             ecCChhHHhhch----hC-CCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          327 TVTDPDLLASLE----ME-NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       327 TTR~~~v~~~~~----~~-~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +|........+.    .. ....+.++      |+  +.++..+++..++.
T Consensus       171 i~n~~~~~~~l~~~~~s~~~~~~i~f~------p~--~~~e~~~il~~r~~  213 (365)
T TIGR02928       171 ISNDLKFRENLDPRVKSSLCEEEIIFP------PY--DAEELRDILENRAE  213 (365)
T ss_pred             EECCcchHhhcCHHHhccCCcceeeeC------CC--CHHHHHHHHHHHHH
Confidence            554443322210    00 11223777      99  99999999998873

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.05  E-value=3e-08  Score=93.23  Aligned_cols=178  Identities=12%  Similarity=0.059  Sum_probs=102.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      +...+.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..|+..++...... ........+...+..
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~~  117 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIE  117 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHH
Confidence            34578899999999999999999843321 11 22233 3334577888999998887653210 000012233333333


Q ss_pred             Hc-CCceEEEEEeCCCC-CchhHHHHHhhCCC---CCCCcEEEEecCChhHHhhch--------hCCCcceecccccCCC
Q 015752          288 YL-TNKKYFIVLDDVFD-DSEIWIDVEELLPD---DENGSRVFITVTDPDLLASLE--------MENGEKIRLDSVLFGG  354 (401)
Q Consensus       288 ~L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~---~~~gs~iivTTR~~~v~~~~~--------~~~~~~~~l~~~~~~~  354 (401)
                      .+ .+++.+||+||++. +...++.+......   +.....|++|.... ......        ......+.++      
T Consensus       118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~------  190 (269)
T TIGR03015       118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLG------  190 (269)
T ss_pred             HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCC------
Confidence            33 67889999999988 55667766543221   12223445555432 222210        0011223678      


Q ss_pred             CCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          355 PLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       355 ~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      +|  +.+|...++...+........  ..--.+..+.|+ .|+|+++
T Consensus       191 ~l--~~~e~~~~l~~~l~~~g~~~~--~~~~~~~~~~i~~~s~G~p~  233 (269)
T TIGR03015       191 PL--DREETREYIEHRLERAGNRDA--PVFSEGAFDAIHRFSRGIPR  233 (269)
T ss_pred             CC--CHHHHHHHHHHHHHHcCCCCC--CCcCHHHHHHHHHHcCCccc
Confidence            99  999999999987642111111  011146777888 8888754

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.93  E-value=6.6e-09  Score=94.96  Aligned_cols=193  Identities=19%  Similarity=0.154  Sum_probs=93.2

Q ss_pred             cccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHH--------
Q 015752          188 ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDD--------  259 (401)
Q Consensus       188 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~--------  259 (401)
                      |+||+.++++|.+++..+  ....+.|+|+.|+|||+|++.+.+  ..+..-..++|+........ .....        
T Consensus         1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~   75 (234)
T PF01637_consen    1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLA   75 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhh-hHHHHHHHHHHHH
Confidence            799999999999998763  356888999999999999999998  33221113444443333322 11112        


Q ss_pred             ------HHHHcCCCCCCc--cccCcCHHHHHHHHHHHc--CCceEEEEEeCCCC-C------chhHHHHH---hhCCCCC
Q 015752          260 ------IIKSVIPPSRVS--VIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-D------SEIWIDVE---ELLPDDE  319 (401)
Q Consensus       260 ------i~~~l~~~~~~~--~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~-~------~~~~~~l~---~~l~~~~  319 (401)
                            +...+.......  .............+.+.+  .+++++||+|++.. .      ......+.   .......
T Consensus        76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  155 (234)
T PF01637_consen   76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ  155 (234)
T ss_dssp             CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence                  222222111000  000112222222333333  23569999999866 2      11122333   3333333


Q ss_pred             CCcEEEEecCChhHHhhc-----h-hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh
Q 015752          320 NGSRVFITVTDPDLLASL-----E-MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV  393 (401)
Q Consensus       320 ~gs~iivTTR~~~v~~~~-----~-~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~  393 (401)
                      +.+ +|++..+.......     . .+....+.|+      ||  +.+++++++...+... . +.   +.-.+...+|.
T Consensus       156 ~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~------~l--~~~e~~~~~~~~~~~~-~-~~---~~~~~~~~~i~  221 (234)
T PF01637_consen  156 NVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELK------PL--SKEEAREFLKELFKEL-I-KL---PFSDEDIEEIY  221 (234)
T ss_dssp             TEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE------------HHHHHHHHHHHHHCC-----------HHHHHHHH
T ss_pred             Cce-EEEECCchHHHHHhhcccCccccccceEEEe------eC--CHHHHHHHHHHHHHHh-h-cc---cCCHHHHHHHH
Confidence            344 44555555554431     0 0122335888      99  9999999999987432 1 11   00133447777


Q ss_pred             -ccCCCC
Q 015752          394 -LCWSYL  399 (401)
Q Consensus       394 -~C~~~l  399 (401)
                       .+||++
T Consensus       222 ~~~gG~P  228 (234)
T PF01637_consen  222 SLTGGNP  228 (234)
T ss_dssp             HHHTT-H
T ss_pred             HHhCCCH
Confidence             888875

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK06893 DNA replication initiation factor; Validated

Probab=98.90  E-value=1.7e-08  Score=92.74  Aligned_cols=142  Identities=16%  Similarity=0.178  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      .+.+.|+|++|+|||+|++.+++  ........+.|+++....   ....                         .+.+.
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~---~~~~-------------------------~~~~~   88 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQ---YFSP-------------------------AVLEN   88 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhh---hhhH-------------------------HHHhh
Confidence            35688999999999999999998  333333455676653110   0000                         11111


Q ss_pred             cCCceEEEEEeCCCC-C-chhHHH-HHhhCCCC-CCCcEEEE-ecCC---------hhHHhhchhCCCcce-ecccccCC
Q 015752          289 LTNKKYFIVLDDVFD-D-SEIWID-VEELLPDD-ENGSRVFI-TVTD---------PDLLASLEMENGEKI-RLDSVLFG  353 (401)
Q Consensus       289 L~~kr~LlVlDdv~~-~-~~~~~~-l~~~l~~~-~~gs~iiv-TTR~---------~~v~~~~~~~~~~~~-~l~~~~~~  353 (401)
                      +. +.-+|+|||+|. . ...|+. +...+... ..|+.+|| |++.         +++...+   ....+ +++     
T Consensus        89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl---~~g~~~~l~-----  159 (229)
T PRK06893         89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL---TWGEIYQLN-----  159 (229)
T ss_pred             cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH---hcCCeeeCC-----
Confidence            21 235899999987 2 345653 33333321 23555554 5544         3455554   33455 899     


Q ss_pred             CCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCC
Q 015752          354 GPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSY  398 (401)
Q Consensus       354 ~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~  398 (401)
                       ++  +.++.++++.+.+......  ..    .++..-|+ .|.+.
T Consensus       160 -~p--d~e~~~~iL~~~a~~~~l~--l~----~~v~~~L~~~~~~d  196 (229)
T PRK06893        160 -DL--TDEQKIIVLQRNAYQRGIE--LS----DEVANFLLKRLDRD  196 (229)
T ss_pred             -CC--CHHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHhccCC
Confidence             99  9999999999988532111  11    45555566 66554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.90  E-value=2e-08  Score=110.35  Aligned_cols=190  Identities=14%  Similarity=0.128  Sum_probs=112.7

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l  264 (401)
                      ..++-|+.    |.+.|.. ....+++.|.|++|.||||++..+.+.      ++.++|+++.. +-++..++..++..+
T Consensus        14 ~~~~~R~r----l~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l   82 (903)
T PRK04841         14 HNTVVRER----LLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL   82 (903)
T ss_pred             cccCcchH----HHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence            45566664    4444433 245789999999999999999998752      23689999865 446666667777776


Q ss_pred             CCCCCCc--------cccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-CchhHH-HHHhhCCCCCCCcEEEEecCCh
Q 015752          265 IPPSRVS--------VIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-DSEIWI-DVEELLPDDENGSRVFITVTDP  331 (401)
Q Consensus       265 ~~~~~~~--------~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~~~~~~-~l~~~l~~~~~gs~iivTTR~~  331 (401)
                      .......        ..... +...+...+...+.  +.+++|||||+.. +..... .+...+.....+.++|||||..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~  162 (903)
T PRK04841         83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL  162 (903)
T ss_pred             HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence            4221110        00111 22333333433332  6899999999977 433333 4444444445567888999984


Q ss_pred             hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          332 DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       332 ~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      .............. .++...|  +|  +.+|+..||....|...     .    .+...+|. .|+|+.
T Consensus       163 ~~~~~~~l~~~~~~~~l~~~~l--~f--~~~e~~~ll~~~~~~~~-----~----~~~~~~l~~~t~Gwp  219 (903)
T PRK04841        163 PPLGIANLRVRDQLLEIGSQQL--AF--DHQEAQQFFDQRLSSPI-----E----AAESSRLCDDVEGWA  219 (903)
T ss_pred             CCCchHhHHhcCcceecCHHhC--CC--CHHHHHHHHHhccCCCC-----C----HHHHHHHHHHhCChH
Confidence            21111100011222 4443334  78  99999999998876421     1    23345667 777764

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.83  E-value=3.4e-08  Score=95.82  Aligned_cols=188  Identities=14%  Similarity=0.012  Sum_probs=100.6

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+|+|+++.++.+...+..   .......+.|+|++|+|||+||+.+++.  ....+   .++..+ .......+..++.
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~   98 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILT   98 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHH
Confidence            8899999999999887753   2344567889999999999999999983  32222   112211 1111222333333


Q ss_pred             HcCCCCCCc-cccCcCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhCC
Q 015752          263 SVIPPSRVS-VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMEN  341 (401)
Q Consensus       263 ~l~~~~~~~-~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~  341 (401)
                      .+....--. ++++.-.....+.+...+.+.+..+|+|+..+ ..   .+...+|   +.+-|..||+...+........
T Consensus        99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~-~~---~~~~~l~---~~~li~at~~~~~l~~~L~sRf  171 (328)
T PRK00080         99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPA-AR---SIRLDLP---PFTLIGATTRAGLLTSPLRDRF  171 (328)
T ss_pred             hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcc-cc---ceeecCC---CceEEeecCCcccCCHHHHHhc
Confidence            332110000 01111001122233444445555555555433 21   1111122   2455666777554433221111


Q ss_pred             CcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          342 GEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       342 ~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      ...+.++      ++  +.++..+++...++.....   ..   .+....|+ .|+|++.
T Consensus       172 ~~~~~l~------~~--~~~e~~~il~~~~~~~~~~---~~---~~~~~~ia~~~~G~pR  217 (328)
T PRK00080        172 GIVQRLE------FY--TVEELEKIVKRSARILGVE---ID---EEGALEIARRSRGTPR  217 (328)
T ss_pred             CeeeecC------CC--CHHHHHHHHHHHHHHcCCC---cC---HHHHHHHHHHcCCCch
Confidence            1223888      99  9999999999988642211   11   45678888 8998763

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.82  E-value=3.3e-08  Score=94.85  Aligned_cols=187  Identities=14%  Similarity=-0.004  Sum_probs=102.9

Q ss_pred             CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+|+|++..+++|..++...   ......+.++|++|+|||+||+.+++.  ....|   ..+..+..... ..+...+.
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l~~~l~   77 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDLAAILT   77 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhHHHHHH
Confidence            57999999999999888631   234556789999999999999999983  32222   11221111111 12222333


Q ss_pred             HcCCCCCCc-cccCcCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhCC
Q 015752          263 SVIPPSRVS-VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMEN  341 (401)
Q Consensus       263 ~l~~~~~~~-~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~  341 (401)
                      .+....--. ++++.-.......+...+.+.+..+|+++..+ ...|   ...+|   +.+-|..||+...+........
T Consensus        78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~-~~~~---~~~~~---~~~li~~t~~~~~l~~~l~sR~  150 (305)
T TIGR00635        78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPS-ARSV---RLDLP---PFTLVGATTRAGMLTSPLRDRF  150 (305)
T ss_pred             hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcc-ccce---eecCC---CeEEEEecCCccccCHHHHhhc
Confidence            332210000 11111011223445555556666666766544 3222   11122   2455666777654433321112


Q ss_pred             Ccce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          342 GEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       342 ~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                       ..+ .++      ++  +.++..+++.+.++....   ..+   .+....|+ .|+|++.
T Consensus       151 -~~~~~l~------~l--~~~e~~~il~~~~~~~~~---~~~---~~al~~ia~~~~G~pR  196 (305)
T TIGR00635       151 -GIILRLE------FY--TVEELAEIVSRSAGLLNV---EIE---PEAALEIARRSRGTPR  196 (305)
T ss_pred             -ceEEEeC------CC--CHHHHHHHHHHHHHHhCC---CcC---HHHHHHHHHHhCCCcc
Confidence             334 888      99  999999999998863211   111   34556788 8988764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.79  E-value=2.6e-08  Score=95.52  Aligned_cols=142  Identities=17%  Similarity=0.203  Sum_probs=88.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..+.++++   .  +.+....+||++|+||||||+.+..  .....|     ..+|...+-.+-++.+     
T Consensus        30 ~HLlg~~~~lrr~v~---~--~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i-----   92 (436)
T COG2256          30 EHLLGEGKPLRRAVE---A--GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI-----   92 (436)
T ss_pred             HhhhCCCchHHHHHh---c--CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH-----
Confidence            445555554444433   2  4566667899999999999999988  444444     3333333222222222     


Q ss_pred             CCCCCccccCcCHHHHHHHHH-HHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChhHHhhchhCC
Q 015752          266 PPSRVSVIIGEDYQLKKSILR-DYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI--TVTDPDLLASLEMEN  341 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~-~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~~~~~~~~  341 (401)
                                      .+.-+ ....|++.+|.+|.|+. +..+-+.+   ||.-.+|.-|+|  ||-++...-.....+
T Consensus        93 ----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS  153 (436)
T COG2256          93 ----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS  153 (436)
T ss_pred             ----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence                            22222 22348999999999977 55433433   455566887777  777775322111124


Q ss_pred             Ccce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          342 GEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       342 ~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ...+ .++      ||  +.+|-.+++.+.+
T Consensus       154 R~~vf~lk------~L--~~~di~~~l~ra~  176 (436)
T COG2256         154 RARVFELK------PL--SSEDIKKLLKRAL  176 (436)
T ss_pred             hhheeeee------cC--CHHHHHHHHHHHH
Confidence            5567 999      99  9999999999844

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.75  E-value=9.3e-08  Score=95.63  Aligned_cols=168  Identities=16%  Similarity=0.135  Sum_probs=96.9

Q ss_pred             CccccccccHHH---HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFERGREE---LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+++|.+..+..   +..++..  .....+.++|++|+||||||+.+++.  ....|     +.++....-..-++.+++
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii~   82 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVIE   82 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHHH
Confidence            678888877655   6676654  34557788999999999999999883  32222     222221111111122222


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChhHH--hh
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI--TVTDPDLL--AS  336 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~--~~  336 (401)
                                           ..... ..+++.+|+||+++. +....+.|...+..   ++.++|  ||.+....  ..
T Consensus        83 ---------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a  138 (413)
T PRK13342         83 ---------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA  138 (413)
T ss_pred             ---------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence                                 22111 146788999999987 55566677666543   444544  44544321  11


Q ss_pred             chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          337 LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       337 ~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      +  ...-.+ .+.      +|  +.++.+.++.+.+..... +.  .+.-.+....|+ .|+|.+
T Consensus       139 L--~SR~~~~~~~------~l--s~e~i~~lL~~~l~~~~~-~~--i~i~~~al~~l~~~s~Gd~  190 (413)
T PRK13342        139 L--LSRAQVFELK------PL--SEEDIEQLLKRALEDKER-GL--VELDDEALDALARLANGDA  190 (413)
T ss_pred             H--hccceeeEeC------CC--CHHHHHHHHHHHHHHhhc-CC--CCCCHHHHHHHHHhCCCCH
Confidence            1  122234 888      99  999999999987632110 11  011134455666 777764

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.72  E-value=2.2e-08  Score=88.38  Aligned_cols=46  Identities=22%  Similarity=0.167  Sum_probs=31.9

Q ss_pred             ccccccccHHHHHHHHh-cCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          187 DISHFERGREELFDLLI-EGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .|+||+++++++...|. ......+.+.|+|.+|+|||+|.+.++..
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~   47 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR   47 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999993 23445689999999999999999999883

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.68  E-value=5.6e-08  Score=80.82  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=77.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccc-----cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFY-----FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKK  282 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~  282 (401)
                      +.+.+.|+|.+|+|||++++.+.++  ....     -..++|+++....+...+...|+.+++.....    ..+...+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~   76 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELR   76 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHH
Confidence            3468899999999999999999873  2221     34567999888779999999999999987432    12677777


Q ss_pred             HHHHHHcCCc-eEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCC
Q 015752          283 SILRDYLTNK-KYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTD  330 (401)
Q Consensus       283 ~~l~~~L~~k-r~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~  330 (401)
                      ..+.+.+... ..+||||++..  +...++.|.....  ..+.++|+..+.
T Consensus        77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            8888888654 46999999855  1233445544433  556677776553

>PF13173 AAA_14: AAA domain

Probab=98.65  E-value=9.8e-08  Score=79.47  Aligned_cols=121  Identities=17%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      .+++.|.|+.|+|||||+++++.+..   ....+++++..........                    ..+ ....+.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~   57 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL   57 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence            36889999999999999999987332   2345666655443221100                    000 22333333


Q ss_pred             cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc-h--hCCCcce-ecccccCCCCCCCChHH
Q 015752          289 LTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL-E--MENGEKI-RLDSVLFGGPLIRLKHE  362 (401)
Q Consensus       289 L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~-~--~~~~~~~-~l~~~~~~~~L~~~~~e  362 (401)
                      ...++.+|+||++.. ...|......+.+..+..+|++|+.+......- .  ..+.... +|.      ||  +-.|
T Consensus        58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~------Pl--sf~E  126 (128)
T PF13173_consen   58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELY------PL--SFRE  126 (128)
T ss_pred             hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEEC------CC--CHHH
Confidence            444778899999988 667777776666655678999999987765331 0  0122222 777      88  7766

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.65  E-value=1.2e-06  Score=92.09  Aligned_cols=199  Identities=10%  Similarity=-0.021  Sum_probs=116.2

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCc---ccccC--eEEEEEcCCCCCHHHHH
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHV---KFYFD--CHAWVRVSLDYDFRRIL  257 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~  257 (401)
                      ..+.||++++++|...|..   +.....++.|.|++|.|||++++.+.....-   ....+  .+++|+...-.+...++
T Consensus       755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY  834 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY  834 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence            5678999999999998865   2333467789999999999999999863211   11222  35667666666788888


Q ss_pred             HHHHHHcCCCCCCccccCc-CHHHHHHHHHHHc-C--CceEEEEEeCCCC-CchhHHHHHhhCCC-CCCCcEEEE--ecC
Q 015752          258 DDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYL-T--NKKYFIVLDDVFD-DSEIWIDVEELLPD-DENGSRVFI--TVT  329 (401)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L-~--~kr~LlVlDdv~~-~~~~~~~l~~~l~~-~~~gs~iiv--TTR  329 (401)
                      ..|..++....+    ... ........+...+ .  +...+||||++.. ....-+.|...+.. ...+++|+|  +|.
T Consensus       835 qvI~qqL~g~~P----~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN  910 (1164)
T PTZ00112        835 QVLYKQLFNKKP----PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN  910 (1164)
T ss_pred             HHHHHHHcCCCC----CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence            889888854321    111 3334444444444 2  2345899999976 21111222222211 123455543  333


Q ss_pred             ChhHH----hhchhC-CCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHhccCCC
Q 015752          330 DPDLL----ASLEME-NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCWSY  398 (401)
Q Consensus       330 ~~~v~----~~~~~~-~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~~C~~~  398 (401)
                      .-+..    ..+... ....+..+      |+  +.++-.+++..++...  .+...+..++-+|+.++.+.|.
T Consensus       911 dlDLperLdPRLRSRLg~eeIvF~------PY--TaEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SGD  974 (1164)
T PTZ00112        911 TMDLPERLIPRCRSRLAFGRLVFS------PY--KGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGD  974 (1164)
T ss_pred             chhcchhhhhhhhhccccccccCC------CC--CHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCCH
Confidence            22211    111000 22223456      99  9999999999998642  2333455666666655555554

>PTZ00202 tuzin; Provisional

Probab=98.64  E-value=2.1e-06  Score=84.08  Aligned_cols=160  Identities=13%  Similarity=0.091  Sum_probs=95.9

Q ss_pred             CccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      ..|+||+.+...|...|.. +....+++.|.|++|+|||||++.+.....    +. ..+++..   +..+++..++.++
T Consensus       262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElLr~LL~AL  333 (550)
T PTZ00202        262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTLRSVVKAL  333 (550)
T ss_pred             cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHHHHHHHHc
Confidence            7999999999999999864 223356999999999999999999987322    11 2222222   6799999999999


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHc-----C-CceEEEEEeCCCCCchhHHHHH---hhCCCCCCCcEEEEecCChhHHh
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDYL-----T-NKKYFIVLDDVFDDSEIWIDVE---ELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVlDdv~~~~~~~~~l~---~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      +.+...      ...++...|.+.+     . |++.+||+-=- . .+.+..+.   ..|.+...-|.|++----+++..
T Consensus       334 GV~p~~------~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-e-g~~l~rvyne~v~la~drr~ch~v~evpleslt~  405 (550)
T PTZ00202        334 GVPNVE------ACGDLLDFISEACRRAKKMNGETPLLVLKLR-E-GSSLQRVYNEVVALACDRRLCHVVIEVPLESLTI  405 (550)
T ss_pred             CCCCcc------cHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-C-CCcHHHHHHHHHHHHccchhheeeeeehHhhcch
Confidence            974221      2233444444433     2 67777776432 2 22222221   23344455677887655444322


Q ss_pred             hchhCCCcce-ecccccCCCCCCCChHHHHHHHHH
Q 015752          336 SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFIL  369 (401)
Q Consensus       336 ~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~  369 (401)
                      ..-.-..-.. .++      ++  +.++|...-..
T Consensus       406 ~~~~lprldf~~vp------~f--sr~qaf~y~~h  432 (550)
T PTZ00202        406 ANTLLPRLDFYLVP------NF--SRSQAFAYTQH  432 (550)
T ss_pred             hcccCccceeEecC------CC--CHHHHHHHHhh
Confidence            1100011122 555      77  87777765443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.63  E-value=3.6e-07  Score=76.58  Aligned_cols=124  Identities=16%  Similarity=0.031  Sum_probs=70.4

Q ss_pred             ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCC
Q 015752          189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPS  268 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~  268 (401)
                      +|++..+..+...+...  ....+.|+|.+|+|||++++.+++.  ....-..++++..++..........+..      
T Consensus         1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~------   70 (151)
T cd00009           1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGH------   70 (151)
T ss_pred             CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhh------
Confidence            36778888888887652  3467889999999999999999983  3222234566655443322111110000      


Q ss_pred             CCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C---chhHHHHHhhCCCC---CCCcEEEEecCChh
Q 015752          269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D---SEIWIDVEELLPDD---ENGSRVFITVTDPD  332 (401)
Q Consensus       269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~---~~~~~~l~~~l~~~---~~gs~iivTTR~~~  332 (401)
                              .  ............++.+||+||++. .   ...+..+...+...   ..+..||+||....
T Consensus        71 --------~--~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          71 --------F--LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             --------h--hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence                    0  001111122345778999999985 1   12222333333221   35778888888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.61  E-value=7.5e-07  Score=86.52  Aligned_cols=170  Identities=14%  Similarity=0.049  Sum_probs=91.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCH-HHHHH---HH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDF-RRILD---DI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~---~i  260 (401)
                      .+++|++..++.+..++..+  ..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++.-... ...+.   ..
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   91 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRF   91 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcch
Confidence            67899999999998888653  344678999999999999999877321 11122 2334443321100 00000   00


Q ss_pred             HHHcCCCCCCccccCc-CHHHHHH---HHHHHc--CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-
Q 015752          261 IKSVIPPSRVSVIIGE-DYQLKKS---ILRDYL--TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-  332 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~-~~~~l~~---~l~~~L--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-  332 (401)
                      ...++.. .   .... .......   ......  .+.+-+|||||+.. +......|...+......+++|+||.... 
T Consensus        92 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~  167 (337)
T PRK12402         92 AHFLGTD-K---RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK  167 (337)
T ss_pred             hhhhhhh-h---hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence            0000000 0   0000 1111111   111221  23455899999966 44445556665544444577887775432 


Q ss_pred             HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          333 LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       333 v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +....  ...... .+.      |+  +.++....+.+.+.
T Consensus       168 ~~~~L--~sr~~~v~~~------~~--~~~~~~~~l~~~~~  198 (337)
T PRK12402        168 LIPPI--RSRCLPLFFR------AP--TDDELVDVLESIAE  198 (337)
T ss_pred             Cchhh--cCCceEEEec------CC--CHHHHHHHHHHHHH
Confidence            22222  122223 778      99  99999999988764

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.60  E-value=1.1e-06  Score=91.49  Aligned_cols=191  Identities=10%  Similarity=0.036  Sum_probs=105.7

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.......++       +..+..-.....|...-.
T Consensus        16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h   87 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRF   87 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCC
Confidence            789999999999999886532 244667999999999999998876322111110       011111111111111000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~  338 (401)
                      ....+.+.... ..+++...+...    ..++.-++|||+++. +...|+.|...+-....+.++|+||++.. +...+.
T Consensus        88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr  167 (830)
T PRK07003         88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL  167 (830)
T ss_pred             ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence            00000000001 222222222221    124556889999987 66778888887766556777777776643 333321


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      . ....+++.      +|  +.++..+.+.+.+......  ..    .+....|+ .|.|.+
T Consensus       168 S-RCq~f~Fk------~L--s~eeIv~~L~~Il~~EgI~--id----~eAL~lIA~~A~Gsm  214 (830)
T PRK07003        168 S-RCLQFNLK------QM--PAGHIVSHLERILGEERIA--FE----PQALRLLARAAQGSM  214 (830)
T ss_pred             h-heEEEecC------Cc--CHHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHcCCCH
Confidence            1 11333777      99  9999999999887532111  11    34445666 666654

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.57  E-value=2.2e-05  Score=82.29  Aligned_cols=176  Identities=17%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc---CeEEEEEcCC---CCCHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF---DCHAWVRVSL---DYDFRRILDD  259 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~~~~~  259 (401)
                      ++++|.+..+..+.+.+..  .....+.|+|++|+||||||+.+++.......+   ...-|+.+..   ..+...+...
T Consensus       154 ~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~  231 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP  231 (615)
T ss_pred             HhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence            6789999999988887753  334578899999999999999998754333322   1234554432   1222222111


Q ss_pred             H---------------HHHcCCCCC---------Cc----cccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHH
Q 015752          260 I---------------IKSVIPPSR---------VS----VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWID  310 (401)
Q Consensus       260 i---------------~~~l~~~~~---------~~----~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~  310 (401)
                      +               +...+....         ..    +.++.-....+..+.+.+++++++++-|+.|. +...|+.
T Consensus       232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~  311 (615)
T TIGR02903       232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY  311 (615)
T ss_pred             hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence            1               111111100         00    12222223457788888889999999887776 5667888


Q ss_pred             HHhhCCCCCCCcEEEE--ecCChhH-HhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          311 VEELLPDDENGSRVFI--TVTDPDL-LASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       311 l~~~l~~~~~gs~iiv--TTR~~~v-~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +...+....+...+++  ||++... ..... .....+.+.      |+  +.+|.+.++.+.+.
T Consensus       312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLr-SR~~~i~~~------pl--s~edi~~Il~~~a~  367 (615)
T TIGR02903       312 IKKLFEEGAPADFVLIGATTRDPEEINPALR-SRCAEVFFE------PL--TPEDIALIVLNAAE  367 (615)
T ss_pred             hhhhcccCccceEEEEEeccccccccCHHHH-hceeEEEeC------CC--CHHHHHHHHHHHHH
Confidence            8877776655555655  6665432 11110 011223777      99  99999999999875

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.57  E-value=1.1e-06  Score=91.60  Aligned_cols=170  Identities=19%  Similarity=0.182  Sum_probs=116.5

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC-CCHHHHHHHHHHHcCCCCCCc--
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD-YDFRRILDDIIKSVIPPSRVS--  271 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~--  271 (401)
                      +.++++.|... .+.+++.|..++|.|||||+.....  .. ..=..+.|.++... -++..++..++..++...+..  
T Consensus        24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~   99 (894)
T COG2909          24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD   99 (894)
T ss_pred             cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence            34566766653 3679999999999999999999875  11 22356899998774 567888888888887543321  


Q ss_pred             ------cccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhC
Q 015752          272 ------VIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEME  340 (401)
Q Consensus       272 ------~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~  340 (401)
                            +.... +...+...+..-+.  .++.++||||..-  ++.--..+...+...+.+-..|||||+..-.......
T Consensus       100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR  179 (894)
T COG2909         100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR  179 (894)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence                  01111 44455666666554  3689999999865  3443445555555566688999999987544333223


Q ss_pred             CCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          341 NGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       341 ~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      -.+.+ ++++..|  .|  +.+|+-++|....+
T Consensus       180 lr~~llEi~~~~L--rf--~~eE~~~fl~~~~~  208 (894)
T COG2909         180 LRDELLEIGSEEL--RF--DTEEAAAFLNDRGS  208 (894)
T ss_pred             ehhhHHhcChHhh--cC--ChHHHHHHHHHcCC
Confidence            45555 7777777  78  99999999988774

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.56  E-value=2.4e-06  Score=83.95  Aligned_cols=170  Identities=12%  Similarity=0.047  Sum_probs=93.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..++.+.+.+..+ .-...+.++|++|+||||+|+.+.+.........       ..++..-....++.....
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~   87 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC   87 (363)
T ss_pred             hhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence            78999999999998888653 2345678999999999999999987321111110       000000001111111100


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~  338 (401)
                      ..-........ ..++....+...    ..+++-++|+|++.. +...++.+...+......+++|++|.+. .+.....
T Consensus        88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~  167 (363)
T PRK14961         88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL  167 (363)
T ss_pred             CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence            00000000000 112221111111    124566999999977 5567888888777666677777766543 3333331


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                       +....+++.      |+  +.++..+.+...+.
T Consensus       168 -SRc~~~~~~------~l--~~~el~~~L~~~~~  192 (363)
T PRK14961        168 -SRCLQFKLK------II--SEEKIFNFLKYILI  192 (363)
T ss_pred             -hhceEEeCC------CC--CHHHHHHHHHHHHH
Confidence             011223888      99  99999988888663

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.53  E-value=2.3e-07  Score=85.92  Aligned_cols=93  Identities=12%  Similarity=-0.006  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC--CCHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD--YDFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSIL  285 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l  285 (401)
                      ..++|+|++|+|||||++.+|++.... +|+.++|+.+...  .++.++++.+...+-......+....  .........
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a   95 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA   95 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            467899999999999999999965554 8999999997665  78999999983332211110001110  111222222


Q ss_pred             HHH-cCCceEEEEEeCCCC
Q 015752          286 RDY-LTNKKYFIVLDDVFD  303 (401)
Q Consensus       286 ~~~-L~~kr~LlVlDdv~~  303 (401)
                      ..+ -+|++.++++|++..
T Consensus        96 ~~~~~~G~~vll~iDei~r  114 (249)
T cd01128          96 KRLVEHGKDVVILLDSITR  114 (249)
T ss_pred             HHHHHCCCCEEEEEECHHH
Confidence            222 258999999999853

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK08727 hypothetical protein; Validated

Probab=98.53  E-value=1.5e-06  Score=80.03  Aligned_cols=144  Identities=13%  Similarity=0.018  Sum_probs=80.4

Q ss_pred             Ccccccccc-HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERG-REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~-~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      ++|++.... +..+......  .....+.|+|.+|+|||+|++.+++  ........+.+++..+      ....+    
T Consensus        19 ~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~------~~~~~----   84 (233)
T PRK08727         19 DSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA------AAGRL----   84 (233)
T ss_pred             hhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH------hhhhH----
Confidence            666654433 3333333222  2334689999999999999999987  3333334556665422      11000    


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChh--------
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPD--------  332 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~--------  332 (401)
                                    ..   .+. .+ .+.-+|||||+..  ....|......+.+  ..+|..||+||+...        
T Consensus        85 --------------~~---~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~  145 (233)
T PRK08727         85 --------------RD---ALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP  145 (233)
T ss_pred             --------------HH---HHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence                          01   111 11 1335899999975  12334432222222  124667999998532        


Q ss_pred             -HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          333 -LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       333 -v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                       +.+.+  .....++++      ++  +.++-..++.+++.
T Consensus       146 dL~SRl--~~~~~~~l~------~~--~~e~~~~iL~~~a~  176 (233)
T PRK08727        146 DLRSRL--AQCIRIGLP------VL--DDVARAAVLRERAQ  176 (233)
T ss_pred             HHHHHH--hcCceEEec------CC--CHHHHHHHHHHHHH
Confidence             22222  122233889      99  99999999999774

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.52  E-value=1.2e-06  Score=92.83  Aligned_cols=144  Identities=17%  Similarity=0.209  Sum_probs=85.1

Q ss_pred             CccccccccHH---HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFERGRE---ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+++|.+..+.   .+...+..  .....+.++|++|+||||||+.+++  .....|.   .++.+. ....        
T Consensus        28 dd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~--------   91 (725)
T PRK13341         28 EEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVK--------   91 (725)
T ss_pred             HHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhH--------
Confidence            77899888774   35455543  3455678999999999999999998  4444441   111110 0000        


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHHc--CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChh--HHh
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI--TVTDPD--LLA  335 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~--v~~  335 (401)
                                    +.........+.+  .+++.+|+||+++. +...++.|...+.   .|+.++|  ||.++.  +..
T Consensus        92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~  154 (725)
T PRK13341         92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK  154 (725)
T ss_pred             --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence                          1111122222222  24678999999976 5666677766554   3555555  444432  222


Q ss_pred             hchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          336 SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       336 ~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ..  .....+ .++      +|  +.++...++...+.
T Consensus       155 aL--~SR~~v~~l~------pL--s~edi~~IL~~~l~  182 (725)
T PRK13341        155 AL--VSRSRLFRLK------SL--SDEDLHQLLKRALQ  182 (725)
T ss_pred             Hh--hccccceecC------CC--CHHHHHHHHHHHHH
Confidence            22  122234 888      99  99999999998763

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.51  E-value=3.1e-06  Score=86.07  Aligned_cols=194  Identities=10%  Similarity=-0.033  Sum_probs=106.0

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCe-EEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDC-HAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      .+++|-+..+..|...+..+ .-...+.++|++|+||||+|+.+++.......... ..+.    .+..-.....+....
T Consensus        21 ~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~~~~   95 (507)
T PRK06645         21 AELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFNNHN   95 (507)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHhcCC
Confidence            78899998888888777653 23457789999999999999999873221111100 0000    000000111111100


Q ss_pred             CCCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE-EecCChhHHhhc
Q 015752          265 IPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVF-ITVTDPDLLASL  337 (401)
Q Consensus       265 ~~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ii-vTTR~~~v~~~~  337 (401)
                      .....+.+.... ..+++...+...    +.+++-++|+|+++. ....|+.|...+.+....+.+| +||+...+...+
T Consensus        96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI  175 (507)
T PRK06645         96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI  175 (507)
T ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence            000000000001 222222222221    235777899999988 6778899988887665666665 455555555444


Q ss_pred             hhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          338 EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       338 ~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      .. ....+.+.      ++  +.++....+.+.+...   +....   .+....|+ .|+|.+
T Consensus       176 ~S-Rc~~~ef~------~l--s~~el~~~L~~i~~~e---gi~ie---~eAL~~Ia~~s~Gsl  223 (507)
T PRK06645        176 IS-RCQRYDLR------RL--SFEEIFKLLEYITKQE---NLKTD---IEALRIIAYKSEGSA  223 (507)
T ss_pred             Hh-cceEEEcc------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence            11 12233888      99  9999999999888421   11111   23334566 676654

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.51  E-value=2.1e-06  Score=88.57  Aligned_cols=170  Identities=12%  Similarity=0.057  Sum_probs=96.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+.....|..++..+. -...+.++|+.|+||||+|+.+.+......      |+.. ..+..-...+.+...-.
T Consensus        15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~g~h   86 (702)
T PRK14960         15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNEGRF   86 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhcCCC
Confidence            789999999999999987542 246778999999999999998876321111      1110 01111111111111000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~  338 (401)
                      ..--+...... ..+++...+...    ..+++-++|||++.. +...++.|...+-....+.++|++|.+. .+.....
T Consensus        87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl  166 (702)
T PRK14960         87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI  166 (702)
T ss_pred             CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence            00000000000 222222222211    235667899999987 6677888888777655667777777654 2322220


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                       .....+++.      +|  +.++....+...+.
T Consensus       167 -SRCq~feFk------pL--s~eEI~k~L~~Il~  191 (702)
T PRK14960        167 -SRCLQFTLR------PL--AVDEITKHLGAILE  191 (702)
T ss_pred             -Hhhheeecc------CC--CHHHHHHHHHHHHH
Confidence             122333888      99  99999998888774

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.51  E-value=2.4e-06  Score=87.15  Aligned_cols=190  Identities=11%  Similarity=-0.019  Sum_probs=104.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.....+.+...+|.|.+..        .+.....
T Consensus        14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~~h   84 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRGAH   84 (504)
T ss_pred             HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcCCC
Confidence            778998888888888886532 3356689999999999999999874322222222233221110        0000000


Q ss_pred             CCCCCccccCc-CH---HHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752          266 PPSRVSVIIGE-DY---QLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~---~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~  338 (401)
                      ........... ..   .++...+... +.+++-++|||+++. ....++.|...+......+.+|++|.. ..+...+.
T Consensus        85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~  164 (504)
T PRK14963         85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL  164 (504)
T ss_pred             CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence            00000000000 12   2222222211 235667999999977 567788888888765556666555543 33322221


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                       .....+++.      +|  +.++....+.+.+......-  .    .+....|+ .|+|.+
T Consensus       165 -SRc~~~~f~------~l--s~~el~~~L~~i~~~egi~i--~----~~Al~~ia~~s~Gdl  211 (504)
T PRK14963        165 -SRTQHFRFR------RL--TEEEIAGKLRRLLEAEGREA--E----PEALQLVARLADGAM  211 (504)
T ss_pred             -cceEEEEec------CC--CHHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHcCCCH
Confidence             012233888      99  99999999998873211111  1    33445566 666654

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.50  E-value=3.4e-06  Score=81.18  Aligned_cols=176  Identities=12%  Similarity=0.060  Sum_probs=98.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc--CCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV--SLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~  263 (401)
                      .+++|++..++.+..++..+  ..+.+.++|.+|+||||+|+.+.+.... ..+.. .++.+  +...... .....+..
T Consensus        17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~~~-~~i~~~~~~~~~~~-~~~~~i~~   91 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYG-EDWRE-NFLELNASDERGID-VIRNKIKE   91 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcC-Ccccc-ceEEeccccccchH-HHHHHHHH
Confidence            77999999999999988653  3445789999999999999999873211 11111 12222  2221111 11111111


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCC
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMEN  341 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~  341 (401)
                      +....+                  .....+-+|++|++.. .......|...+......+++|+++... .+..... ..
T Consensus        92 ~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~-sr  152 (319)
T PRK00440         92 FARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ-SR  152 (319)
T ss_pred             HHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-HH
Confidence            111000                  0012456899999866 3455567777666555566777766432 2211110 01


Q ss_pred             CcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          342 GEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       342 ~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      ...+++.      ++  ++++....+...+...   +....   .+....++ .|+|.+
T Consensus       153 ~~~~~~~------~l--~~~ei~~~l~~~~~~~---~~~i~---~~al~~l~~~~~gd~  197 (319)
T PRK00440        153 CAVFRFS------PL--KKEAVAERLRYIAENE---GIEIT---DDALEAIYYVSEGDM  197 (319)
T ss_pred             hheeeeC------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence            1223888      99  9999988888877421   11111   33455566 677764

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.50  E-value=5.3e-06  Score=79.93  Aligned_cols=155  Identities=14%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc----CcccccCeEEEEEc-CCCCCHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN----HVKFYFDCHAWVRV-SLDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~~~~i  260 (401)
                      .+++|-+..++.+..++..+ .-.....++|+.|+||||+|+.++...    ....|.+...|... +....+.. ++++
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~   81 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI   81 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence            46789888888898888653 234577899999999999999887621    12345565555442 22233333 2233


Q ss_pred             HHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-Hhhch
Q 015752          261 IKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-LASLE  338 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~~~  338 (401)
                      .+.+....                    ..+++=++|+|++.. +...++.|...+.+...++.+|++|.+.+. ...+.
T Consensus        82 ~~~~~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~  141 (313)
T PRK05564         82 IEEVNKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK  141 (313)
T ss_pred             HHHHhcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence            33322110                    124555666776655 588899999999988889999988876542 22221


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      . ....+.+.      ++  ++++....+.+.+
T Consensus       142 S-Rc~~~~~~------~~--~~~~~~~~l~~~~  165 (313)
T PRK05564        142 S-RCQIYKLN------RL--SKEEIEKFISYKY  165 (313)
T ss_pred             h-hceeeeCC------Cc--CHHHHHHHHHHHh
Confidence            1 11223888      89  9999888777654

>PLN03025 replication factor C subunit; Provisional

Probab=98.48  E-value=2.7e-06  Score=82.14  Aligned_cols=178  Identities=12%  Similarity=0.071  Sum_probs=99.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      .+++|.++.++.|..++..+  +..-+.++|++|+||||+|+.+++... ...|. .++-++.+...... .+++++..+
T Consensus        13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~i~~~   88 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNKIKMF   88 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHHHHHH
Confidence            77899888888888776543  344567899999999999999887321 11222 11222222222211 222222221


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCC
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENG  342 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~  342 (401)
                      .....                 ..-.++.-+++||++.. .......|...+......+++|+++... .+.......+ 
T Consensus        89 ~~~~~-----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc-  150 (319)
T PLN03025         89 AQKKV-----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC-  150 (319)
T ss_pred             Hhccc-----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh-
Confidence            11000                 00024567999999977 5555566665554434567777766443 2222221011 


Q ss_pred             cceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          343 EKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       343 ~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      ..+++.      ++  ++++....+...+..   ++..-.   .+....|+ .|+|.+
T Consensus       151 ~~i~f~------~l--~~~~l~~~L~~i~~~---egi~i~---~~~l~~i~~~~~gDl  194 (319)
T PLN03025        151 AIVRFS------RL--SDQEILGRLMKVVEA---EKVPYV---PEGLEAIIFTADGDM  194 (319)
T ss_pred             hcccCC------CC--CHHHHHHHHHHHHHH---cCCCCC---HHHHHHHHHHcCCCH
Confidence            223777      99  999999999988742   121111   33456677 777765

>PRK04195 replication factor C large subunit; Provisional

Probab=98.46  E-value=2.5e-06  Score=87.08  Aligned_cols=173  Identities=13%  Similarity=0.109  Sum_probs=101.8

Q ss_pred             CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .+++|.++.++++.+|+..  .+...+.+.|+|++|+||||+|+.+++..    .|+ .+-++.+...+. ..+..++..
T Consensus        14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i~~   87 (482)
T PRK04195         14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVAGE   87 (482)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHHHH
Confidence            7899999999999999864  22236788999999999999999999833    122 233344432222 223333332


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc----hhHHHHHhhCCCCCCCcEEEEecCChh-HHh-h
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS----EIWIDVEELLPDDENGSRVFITVTDPD-LLA-S  336 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~----~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~  336 (401)
                      .....                  .....++-+||||++.. ..    ..+..|...+..  .+..||+|+.+.. ... .
T Consensus        88 ~~~~~------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~  147 (482)
T PRK04195         88 AATSG------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE  147 (482)
T ss_pred             hhccC------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence            21110                  00113678999999976 21    345666665553  2345666664432 111 1


Q ss_pred             chhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      .. .....+.+.      ++  +.++....+.+.+...   +....   .+....|+ .|+|.+
T Consensus       148 Lr-sr~~~I~f~------~~--~~~~i~~~L~~i~~~e---gi~i~---~eaL~~Ia~~s~GDl  196 (482)
T PRK04195        148 LR-NACLMIEFK------RL--STRSIVPVLKRICRKE---GIECD---DEALKEIAERSGGDL  196 (482)
T ss_pred             Hh-ccceEEEec------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence            10 112333888      89  9999998888877421   11112   34556677 777765

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.46  E-value=3.1e-06  Score=86.71  Aligned_cols=153  Identities=8%  Similarity=0.011  Sum_probs=93.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-------------------ccCeEEEEE
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-------------------YFDCHAWVR  246 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~  246 (401)
                      .+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++...-..                   .|...+++.
T Consensus        16 ~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid   94 (546)
T PRK14957         16 AEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID   94 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence            78999999999999888653 2345577899999999999999976211100                   111222222


Q ss_pred             cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 015752          247 VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRV  324 (401)
Q Consensus       247 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~i  324 (401)
                      ......+.                      +...+.+.+... ..+++-++|+|++.. +...++.|...+-+....+.+
T Consensus        95 aas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f  152 (546)
T PRK14957         95 AASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF  152 (546)
T ss_pred             cccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence            11111111                      222233333221 235677999999976 677788888888776556666


Q ss_pred             EE-ecCChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          325 FI-TVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       325 iv-TTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      |+ ||....+...+.  ..-.+ ++.      ++  +.++-...+.+.+
T Consensus       153 IL~Ttd~~kil~tI~--SRc~~~~f~------~L--s~~eI~~~L~~il  191 (546)
T PRK14957        153 ILATTDYHKIPVTIL--SRCIQLHLK------HI--SQADIKDQLKIIL  191 (546)
T ss_pred             EEEECChhhhhhhHH--HheeeEEeC------CC--CHHHHHHHHHHHH
Confidence            64 554444443321  22233 888      99  9999888888765

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=9.4e-06  Score=79.47  Aligned_cols=172  Identities=18%  Similarity=0.161  Sum_probs=112.6

Q ss_pred             CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-e-EEEEEcCCCCCHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-C-HAWVRVSLDYDFRRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~i~  261 (401)
                      ..+.+|+.+++++...|..  .+....-+.|.|.+|.|||+.++.+..  +++.... . +++|+.....+...++..|+
T Consensus        17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~   94 (366)
T COG1474          17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL   94 (366)
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence            5689999999999998865  222333488999999999999999998  5544432 2 78899988999999999999


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHHHcC--CceEEEEEeCCCC--CchhHHHHHhhCCCCC-CCcEE--EEecCChhHH
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRDYLT--NKKYFIVLDDVFD--DSEIWIDVEELLPDDE-NGSRV--FITVTDPDLL  334 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~-~gs~i--ivTTR~~~v~  334 (401)
                      .+++....    ......+....+.+.+.  ++.++||||++..  +... +-|...+.... ..++|  |..+-+....
T Consensus        95 ~~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~~~  169 (366)
T COG1474          95 NKLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDKFL  169 (366)
T ss_pred             HHcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHHHH
Confidence            99974321    22255566666666663  6899999999976  2221 23322222222 13443  3344444333


Q ss_pred             hhchhC-----CCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          335 ASLEME-----NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       335 ~~~~~~-----~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ..+...     +..++..+      |-  +.+|-...+..++-
T Consensus       170 ~~ld~rv~s~l~~~~I~F~------pY--~a~el~~Il~~R~~  204 (366)
T COG1474         170 DYLDPRVKSSLGPSEIVFP------PY--TAEELYDILRERVE  204 (366)
T ss_pred             HHhhhhhhhccCcceeeeC------CC--CHHHHHHHHHHHHH
Confidence            322100     22334455      78  88999999998873

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.41  E-value=6.6e-06  Score=84.74  Aligned_cols=175  Identities=9%  Similarity=-0.015  Sum_probs=95.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.....+.-.... + .+..+..-.....|...-.
T Consensus        16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~aG~h   92 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEIDAGRF   92 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHHcCCC
Confidence            789999999999999887532 234668899999999999998876321100000000 0 0001111111111111000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~  338 (401)
                      .+.-+.+.... ..+++.+.+.+.    ..++.-++|||++.. +...++.|...+-....++++|+ ||....+...+.
T Consensus        93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr  172 (700)
T PRK12323         93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL  172 (700)
T ss_pred             CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence            00000000001 233333333222    135667999999987 67788888888766555566554 555555544441


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      .++ ..+.+.      ++  +.++..+.+.+.+.
T Consensus       173 SRC-q~f~f~------~l--s~eei~~~L~~Il~  197 (700)
T PRK12323        173 SRC-LQFNLK------QM--PPGHIVSHLDAILG  197 (700)
T ss_pred             HHH-HhcccC------CC--ChHHHHHHHHHHHH
Confidence            111 333777      88  99999988888764

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.41  E-value=4.7e-06  Score=88.50  Aligned_cols=170  Identities=10%  Similarity=-0.013  Sum_probs=95.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++..........       ..+..-.....+.....
T Consensus        16 ddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~~g~~   87 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIAQGRF   87 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHhcCCC
Confidence            78999999999999888653 22345579999999999999999873211111000       00000000001110000


Q ss_pred             CCCC--Cccc-cCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752          266 PPSR--VSVI-IGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE  338 (401)
Q Consensus       266 ~~~~--~~~~-~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~  338 (401)
                      ....  .... ..- +...+...+... ..+++-++|||++.. ....++.|+..+-......++|++|.+ ..+...+.
T Consensus        88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl  167 (944)
T PRK14949         88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL  167 (944)
T ss_pred             ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence            0000  0000 000 222222222211 246778999999987 677888888877665556666665544 44443331


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      . ....+++.      +|  +.++....+.+.+.
T Consensus       168 S-RCq~f~fk------pL--s~eEI~~~L~~il~  192 (944)
T PRK14949        168 S-RCLQFNLK------SL--TQDEIGTQLNHILT  192 (944)
T ss_pred             H-hheEEeCC------CC--CHHHHHHHHHHHHH
Confidence            1 11333888      99  99999999988764

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.40  E-value=3.7e-06  Score=83.68  Aligned_cols=174  Identities=11%  Similarity=-0.008  Sum_probs=94.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE-cCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l  264 (401)
                      .+++|-+..++.|..++..+. -...+.++|++|+||||+|..+.+...-...+....|.. ...++..-.....+....
T Consensus        16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~   94 (397)
T PRK14955         16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT   94 (397)
T ss_pred             hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence            788998888888888886532 234577899999999999998876322211111111110 011111111111111111


Q ss_pred             CCCCCCccccCc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhh
Q 015752          265 IPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLAS  336 (401)
Q Consensus       265 ~~~~~~~~~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~  336 (401)
                      ..+-........ ..+++.+. .+.+     .+++-++|+|++.. ....++.|...+.+....+.+|++| +...+...
T Consensus        95 ~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t  173 (397)
T PRK14955         95 SLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT  173 (397)
T ss_pred             CCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence            000000000000 12333322 2222     34566889999976 5668888888887666667666554 44444433


Q ss_pred             chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          337 LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       337 ~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ..  ....+ ++.      ++  ++++....+...+
T Consensus       174 l~--sR~~~v~f~------~l--~~~ei~~~l~~~~  199 (397)
T PRK14955        174 IA--SRCQRFNFK------RI--PLEEIQQQLQGIC  199 (397)
T ss_pred             HH--HHHHHhhcC------CC--CHHHHHHHHHHHH
Confidence            21  11223 777      89  9999888888776

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.40  E-value=7.1e-06  Score=83.03  Aligned_cols=168  Identities=10%  Similarity=0.016  Sum_probs=88.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+.....|...+..+ .-...+.++|++|+||||+|+.+++.......      .. ..++..-.....+...-.
T Consensus        14 ~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~------~~-~~pc~~c~~c~~i~~g~~   85 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENR------KG-VEPCNECRACRSIDEGTF   85 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccC------CC-CCCCcccHHHHHHhcCCC
Confidence            78999888877777766543 23356789999999999999999763211110      00 000000001111100000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH-----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhc
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY-----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASL  337 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~-----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~  337 (401)
                      ..........+ ..+.+. .+.+.     ..+++-++|+|++.. .....+.|...+.+....+.+|++|.+ ..+...+
T Consensus        86 ~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L  164 (472)
T PRK14962         86 MDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI  164 (472)
T ss_pred             CccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHH
Confidence            00000000000 122211 11111     235667999999976 455667777777654444555444444 3443333


Q ss_pred             hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                        ...-.+ .+.      ++  +.++....+.+.+.
T Consensus       165 --~SR~~vv~f~------~l--~~~el~~~L~~i~~  190 (472)
T PRK14962        165 --ISRCQVIEFR------NI--SDELIIKRLQEVAE  190 (472)
T ss_pred             --hcCcEEEEEC------Cc--cHHHHHHHHHHHHH
Confidence              122334 888      99  99998888888773

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.40  E-value=4.2e-07  Score=88.21  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=64.2

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCC--CHHHHHHHHHHHcCCCCCCcccc
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDY--DFRRILDDIIKSVIPPSRVSVII  274 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~  274 (401)
                      ++++.+..-..+ .-..|+|++|+||||||+.+|++.... +|+.++|+.+.+..  .+.++++.+...+-...... ..
T Consensus       158 rvID~l~PIGkG-QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~-~~  234 (416)
T PRK09376        158 RIIDLIAPIGKG-QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE-PA  234 (416)
T ss_pred             eeeeeecccccC-ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC-CH
Confidence            455555442222 346789999999999999999965554 89999999988877  67777777763221111000 00


Q ss_pred             Cc---CHHHHHHHHHHH-cCCceEEEEEeCCCC
Q 015752          275 GE---DYQLKKSILRDY-LTNKKYFIVLDDVFD  303 (401)
Q Consensus       275 ~~---~~~~l~~~l~~~-L~~kr~LlVlDdv~~  303 (401)
                      ..   ........-..+ ..|+++||++|++..
T Consensus       235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR  267 (416)
T PRK09376        235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR  267 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence            00   001111111222 368999999999853

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.39  E-value=1.7e-06  Score=81.97  Aligned_cols=130  Identities=17%  Similarity=0.257  Sum_probs=84.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      +.+..+.+||++|+||||||+.+.+..+-..    ..||.+|..-.-..-++.|+++...                   .
T Consensus       160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~-------------------~  216 (554)
T KOG2028|consen  160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN-------------------E  216 (554)
T ss_pred             CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------------H
Confidence            4577788999999999999999998443333    5677776655444444555544221                   1


Q ss_pred             HHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChhHHhhchhCCCcce-ecccccCCCCCCCChHH
Q 015752          287 DYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI--TVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHE  362 (401)
Q Consensus       287 ~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~e  362 (401)
                      ..+.++|..|.+|.|.. +..   +--.+||.-.+|+-++|  ||.+++.--....-..=.+ .|+      +|  ..++
T Consensus       217 ~~l~krkTilFiDEiHRFNks---QQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLe------kL--~~n~  285 (554)
T KOG2028|consen  217 KSLTKRKTILFIDEIHRFNKS---QQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLE------KL--PVNA  285 (554)
T ss_pred             HhhhcceeEEEeHHhhhhhhh---hhhcccceeccCceEEEecccCCCccchhHHHHhccceeEec------cC--CHHH
Confidence            23457899999999966 332   23345676677887776  8888753211100022345 889      99  9999


Q ss_pred             HHHHHHHh
Q 015752          363 AWQFFILH  370 (401)
Q Consensus       363 a~~Lf~~~  370 (401)
                      -..++..-
T Consensus       286 v~~iL~ra  293 (554)
T KOG2028|consen  286 VVTILMRA  293 (554)
T ss_pred             HHHHHHHH
Confidence            88888874

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.37  E-value=5e-06  Score=75.98  Aligned_cols=143  Identities=16%  Similarity=0.117  Sum_probs=81.8

Q ss_pred             Ccccc--ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISH--FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vG--r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .+|++  .+..++.+.+++..  .....+.|+|++|+|||+||+.+++.  ........++++.+.-.+      ..   
T Consensus        15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~---   81 (226)
T TIGR03420        15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD---   81 (226)
T ss_pred             cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH---
Confidence            55553  34456777776543  34567889999999999999999873  322333445554432110      00   


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cch-hH-HHHHhhCCC-CCCCcEEEEecCChh-------
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSE-IW-IDVEELLPD-DENGSRVFITVTDPD-------  332 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~-~~-~~l~~~l~~-~~~gs~iivTTR~~~-------  332 (401)
                                         ..+...+.+ .-+|||||+.. +.. .| ..+...+.. ...+..+|+||+...       
T Consensus        82 -------------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~  141 (226)
T TIGR03420        82 -------------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL  141 (226)
T ss_pred             -------------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence                               001111222 23899999976 221 33 344444332 123457888888543       


Q ss_pred             --HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          333 --LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       333 --v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                        +...+  .....+++.      ++  +.++-..++...+
T Consensus       142 ~~L~~r~--~~~~~i~l~------~l--~~~e~~~~l~~~~  172 (226)
T TIGR03420       142 PDLRTRL--AWGLVFQLP------PL--SDEEKIAALQSRA  172 (226)
T ss_pred             HHHHHHH--hcCeeEecC------CC--CHHHHHHHHHHHH
Confidence              12222  112334889      99  9999999998765

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.37  E-value=9.2e-06  Score=84.33  Aligned_cols=173  Identities=8%  Similarity=0.017  Sum_probs=94.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .+++|-+..+..|.+++..+ .-...+.++|+.|+||||+|+.+.+...-....  ....    ...+..-.....|...
T Consensus        16 ~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g   90 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSG   90 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcC
Confidence            78999888888888888653 234567899999999999999885421110000  0000    0011111111222110


Q ss_pred             cCCCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhh
Q 015752          264 VIPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLAS  336 (401)
Q Consensus       264 l~~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~  336 (401)
                      -..+..+.+.... ..+++.+.+...    ..++.-++|||+++. +...++.|...+-+....+++|++| ....+...
T Consensus        91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T  170 (618)
T PRK14951         91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT  170 (618)
T ss_pred             CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence            0000000000011 222332222221    124556899999988 7778888888887655566666554 44444433


Q ss_pred             chhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +. .....+++.      +|  +.++....+.+.+.
T Consensus       171 Il-SRc~~~~f~------~L--s~eei~~~L~~i~~  197 (618)
T PRK14951        171 VL-SRCLQFNLR------PM--APETVLEHLTQVLA  197 (618)
T ss_pred             HH-HhceeeecC------CC--CHHHHHHHHHHHHH
Confidence            31 112333888      99  99999888888764

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.36  E-value=5.8e-06  Score=81.40  Aligned_cols=155  Identities=15%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|+++.+++|.+.+...           -...+-+.++|++|+|||+||+.+++  .....|     +.+..    .
T Consensus       122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~----~  190 (364)
T TIGR01242       122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG----S  190 (364)
T ss_pred             HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----H
Confidence            78899999999998877421           12345688999999999999999998  444333     22211    1


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-C-----------ch---hHHHHHhhCCC-
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-D-----------SE---IWIDVEELLPD-  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~-----------~~---~~~~l~~~l~~-  317 (401)
                      .+    .....+          ........+.+.. ...+.+|+||+++. .           ..   .+..+...+.. 
T Consensus       191 ~l----~~~~~g----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~  256 (364)
T TIGR01242       191 EL----VRKYIG----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF  256 (364)
T ss_pred             HH----HHHhhh----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence            11    111100          1111222222222 34678999999864 0           11   22233333321 


Q ss_pred             -CCCCcEEEEecCChhHHhhc--hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          318 -DENGSRVFITVTDPDLLASL--EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       318 -~~~gs~iivTTR~~~v~~~~--~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                       ...+.+||.||.........  ..+..+.. .++      +.  +.++..++|..++..
T Consensus       257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~------~P--~~~~r~~Il~~~~~~  308 (364)
T TIGR01242       257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVP------LP--DFEGRLEILKIHTRK  308 (364)
T ss_pred             CCCCCEEEEEecCChhhCChhhcCcccCceEEEeC------Cc--CHHHHHHHHHHHHhc
Confidence             13466788888765422111  00122334 778      88  999999999988754

Many proteins may score above the trusted cutoff because an internal

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.34  E-value=6.5e-06  Score=75.95  Aligned_cols=122  Identities=17%  Similarity=0.190  Sum_probs=71.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      ...+.|+|++|+|||+|++.+++  .....-..+.++++.....                        ...+..+.+   
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~------------------------~~~~~~~~~---   95 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW------------------------FVPEVLEGM---   95 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh------------------------hhHHHHHHh---
Confidence            45788999999999999999987  3332233455665532100                        001111111   


Q ss_pred             cCCceEEEEEeCCCC-C-chhHHHHH-hhCCC-CCCC-cEEEEecCChh---------HHhhchhCCCcce-ecccccCC
Q 015752          289 LTNKKYFIVLDDVFD-D-SEIWIDVE-ELLPD-DENG-SRVFITVTDPD---------LLASLEMENGEKI-RLDSVLFG  353 (401)
Q Consensus       289 L~~kr~LlVlDdv~~-~-~~~~~~l~-~~l~~-~~~g-s~iivTTR~~~---------v~~~~~~~~~~~~-~l~~~~~~  353 (401)
                       .. --+|+|||+.. . ...|+... ..+.. ...| .++|+||+...         +.+.+   ....+ +++     
T Consensus        96 -~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl---~~g~~~~l~-----  165 (235)
T PRK08084         96 -EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL---DWGQIYKLQ-----  165 (235)
T ss_pred             -hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH---hCCceeeec-----
Confidence             11 24889999965 1 24454322 22211 1123 47999998653         23333   33345 888     


Q ss_pred             CCCCCChHHHHHHHHHhhC
Q 015752          354 GPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       354 ~~L~~~~~ea~~Lf~~~a~  372 (401)
                       ++  +.++-.+++.+++.
T Consensus       166 -~~--~~~~~~~~l~~~a~  181 (235)
T PRK08084        166 -PL--SDEEKLQALQLRAR  181 (235)
T ss_pred             -CC--CHHHHHHHHHHHHH
Confidence             99  99999999988774

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.32  E-value=7.7e-06  Score=84.08  Aligned_cols=170  Identities=9%  Similarity=0.001  Sum_probs=94.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+..++.+.+++..+ .-...+.++|+.|+||||+|+.+.+...      |.-|.... .+..-...+.+.....
T Consensus        16 ~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~~~~h   87 (605)
T PRK05896         16 KQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESINTNQS   87 (605)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHHcCCC
Confidence            78999999999999988653 2345678999999999999999876221      11122111 1111112222211111


Q ss_pred             CCCCCccccCc-CHHH---HHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhhch
Q 015752          266 PPSRVSVIIGE-DYQL---KKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~---l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~~  338 (401)
                      ..-........ ..++   +...+... ..+++-++|+|++.. ....+..|...+-.....+.+|++| ....+.....
T Consensus        88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~  167 (605)
T PRK05896         88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII  167 (605)
T ss_pred             CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence            00000000001 2222   22222211 123444699999976 5677888888777655566665544 4444433321


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      . ....+++.      ++  ++++....+...+.
T Consensus       168 S-Rcq~ieF~------~L--s~~eL~~~L~~il~  192 (605)
T PRK05896        168 S-RCQRYNFK------KL--NNSELQELLKSIAK  192 (605)
T ss_pred             h-hhhhcccC------CC--CHHHHHHHHHHHHH
Confidence            1 12233888      99  99999888888763

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.32  E-value=1e-05  Score=81.77  Aligned_cols=154  Identities=8%  Similarity=0.002  Sum_probs=93.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc-------------------cccCeEEEEE
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-------------------FYFDCHAWVR  246 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~  246 (401)
                      .+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.....-.                   ..+..++.+.
T Consensus        13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid   91 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID   91 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence            789998888888877776532 23478899999999999998886511000                   0111223333


Q ss_pred             cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 015752          247 VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRV  324 (401)
Q Consensus       247 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~i  324 (401)
                      .+....+.+ .++++                     +..... +.+++-++|+|++.. ....++.|...+-+....+++
T Consensus        92 aas~~~vdd-IR~Ii---------------------e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f  149 (491)
T PRK14964         92 AASNTSVDD-IKVIL---------------------ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF  149 (491)
T ss_pred             cccCCCHHH-HHHHH---------------------HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence            322222211 11122                     111111 135666899999976 567788888888776667766


Q ss_pred             EEec-CChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          325 FITV-TDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       325 ivTT-R~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      |++| ....+...+.  ..-.. .+.      ++  +.++....+.+.+.
T Consensus       150 Ilatte~~Kl~~tI~--SRc~~~~f~------~l--~~~el~~~L~~ia~  189 (491)
T PRK14964        150 ILATTEVKKIPVTII--SRCQRFDLQ------KI--PTDKLVEHLVDIAK  189 (491)
T ss_pred             EEEeCChHHHHHHHH--Hhheeeecc------cc--cHHHHHHHHHHHHH
Confidence            6555 4445544431  22233 888      89  99999888888874

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.32  E-value=1.4e-05  Score=83.26  Aligned_cols=197  Identities=9%  Similarity=-0.020  Sum_probs=104.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE-cCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l  264 (401)
                      .+++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+.......++...|.. ....+..-...+.+...-
T Consensus        16 ~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~   94 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT   94 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence            78999888888888887643 2334578999999999999988876322211111111111 001111111111111111


Q ss_pred             CCCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhhc
Q 015752          265 IPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLASL  337 (401)
Q Consensus       265 ~~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~  337 (401)
                      ..+-........ ..+++...+...    ..+++-++|+|++.. .....+.|...+-+....+.+|+ |++...+...+
T Consensus        95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI  174 (620)
T PRK14954         95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI  174 (620)
T ss_pred             CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence            000000000001 233333322222    234566789999877 56677888888877655666554 54444444333


Q ss_pred             hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                        .....+ ++.      ++  +.++....+.+.+......  ..    .+.+..|+ .|+|.+
T Consensus       175 --~SRc~~vef~------~l--~~~ei~~~L~~i~~~egi~--I~----~eal~~La~~s~Gdl  222 (620)
T PRK14954        175 --ASRCQRFNFK------RI--PLDEIQSQLQMICRAEGIQ--ID----ADALQLIARKAQGSM  222 (620)
T ss_pred             --HhhceEEecC------CC--CHHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHhCCCH
Confidence              122334 888      99  9998888887766321000  11    34455666 677654

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.31  E-value=2.8e-05  Score=76.11  Aligned_cols=154  Identities=11%  Similarity=0.072  Sum_probs=91.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc--------------------cccCeEEEE
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK--------------------FYFDCHAWV  245 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv  245 (401)
                      .+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+.....-.                    .+++. +++
T Consensus        14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~   91 (355)
T TIGR02397        14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI   91 (355)
T ss_pred             hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence            788999999999999886532 34577899999999999998886531100                    01221 222


Q ss_pred             EcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752          246 RVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR  323 (401)
Q Consensus       246 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~  323 (401)
                      ..+......                      +...+...+... ..+++-++|+|++.. ....++.+...+......+.
T Consensus        92 ~~~~~~~~~----------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~  149 (355)
T TIGR02397        92 DAASNNGVD----------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV  149 (355)
T ss_pred             eccccCCHH----------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence            211111111                      111222221111 124556889999866 45667788888766556677


Q ss_pred             EEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          324 VFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       324 iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +|++|.+.. +...+. .....+++.      ++  ++++....+.+.+.
T Consensus       150 lIl~~~~~~~l~~~l~-sr~~~~~~~------~~--~~~~l~~~l~~~~~  190 (355)
T TIGR02397       150 FILATTEPHKIPATIL-SRCQRFDFK------RI--PLEDIVERLKKILD  190 (355)
T ss_pred             EEEEeCCHHHHHHHHH-hheeEEEcC------CC--CHHHHHHHHHHHHH
Confidence            777765544 333321 111223777      88  99998888888763

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.29  E-value=1.4e-05  Score=83.21  Aligned_cols=170  Identities=12%  Similarity=0.056  Sum_probs=91.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+.........       ...+..-.....+...-.
T Consensus        16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-------~~pCg~C~sCr~i~~g~~   87 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-------GEPCGVCQSCTQIDAGRY   87 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-------CCCCcccHHHHHHhccCc
Confidence            789999999999999987532 235678999999999999998876311111100       000000000000000000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~  338 (401)
                      ....+...... ..+.+...+...    ..+++-++|||++.. +......|...+-.....+++|++|.+. .+...+.
T Consensus        88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr  167 (709)
T PRK08691         88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL  167 (709)
T ss_pred             cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence            00000000000 222222222211    235667899999977 5556677777775544566677666543 3322220


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                       +....+.+.      ++  +.++....+.+.+.
T Consensus       168 -SRC~~f~f~------~L--s~eeI~~~L~~Il~  192 (709)
T PRK08691        168 -SRCLQFVLR------NM--TAQQVADHLAHVLD  192 (709)
T ss_pred             -HHHhhhhcC------CC--CHHHHHHHHHHHHH
Confidence             011233777      88  99998888888774

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.29  E-value=3.9e-05  Score=68.19  Aligned_cols=88  Identities=13%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHH
Q 015752          291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFF  367 (401)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf  367 (401)
                      +.+-++|+|++.. +...++.|...+.+....+.+|++|++. .+...+.  ....+ .+.      ++  +.++....+
T Consensus        95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~--sr~~~~~~~------~~--~~~~~~~~l  164 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR--SRCQVLPFP------PL--SEEALLQWL  164 (188)
T ss_pred             CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH--hhcEEeeCC------CC--CHHHHHHHH
Confidence            5667899999977 5667788888887766667777766654 3322221  22234 888      99  999988888


Q ss_pred             HHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          368 ILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       368 ~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      .+. |   ..        .+.+..|+ .|+|.+.
T Consensus       165 ~~~-g---i~--------~~~~~~i~~~~~g~~r  186 (188)
T TIGR00678       165 IRQ-G---IS--------EEAAELLLALAGGSPG  186 (188)
T ss_pred             HHc-C---CC--------HHHHHHHHHHcCCCcc
Confidence            776 2   11        34567888 8888764

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.28  E-value=2.2e-05  Score=77.64  Aligned_cols=169  Identities=10%  Similarity=-0.005  Sum_probs=90.9

Q ss_pred             CccccccccHHHHHHHHhcCCC--------CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSS--------GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRIL  257 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~  257 (401)
                      .+++|-+..++.|.+.+..+..        -..-+.++|++|+|||++|+.+.....-...-        ..++..-...
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--------~~~Cg~C~~C   76 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--------EPGCGECRAC   76 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--------CCCCCCCHHH
Confidence            6789988889999998875421        24568899999999999999886521110000        0000000000


Q ss_pred             HHHHHHcCCCCCCc-cccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC
Q 015752          258 DDIIKSVIPPSRVS-VIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD  330 (401)
Q Consensus       258 ~~i~~~l~~~~~~~-~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~  330 (401)
                      ..+.....+.-... +.... ..+++...+...    ..+++-++++|++.. +....+.|...+-....++.+|++|.+
T Consensus        77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~  156 (394)
T PRK07940         77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS  156 (394)
T ss_pred             HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence            11100000000000 00000 222222211111    124556888899977 666667777777665566766666665


Q ss_pred             h-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          331 P-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       331 ~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      . .+...+.. ....+.+.      ++  +.++..+.+.+..
T Consensus       157 ~~~llpTIrS-Rc~~i~f~------~~--~~~~i~~~L~~~~  189 (394)
T PRK07940        157 PEDVLPTIRS-RCRHVALR------TP--SVEAVAEVLVRRD  189 (394)
T ss_pred             hHHChHHHHh-hCeEEECC------CC--CHHHHHHHHHHhc
Confidence            4 44444321 12333888      99  9999988887544

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.25  E-value=2e-05  Score=79.00  Aligned_cols=191  Identities=9%  Similarity=-0.033  Sum_probs=102.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+++...-..... ..  .......    ...+.....
T Consensus        18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~--pCg~C~s----C~~i~~g~~   89 (484)
T PRK14956         18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NE--PCNECTS----CLEITKGIS   89 (484)
T ss_pred             HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-cc--ccCCCcH----HHHHHccCC
Confidence            789999988888888887532 234578999999999999999987321111000 00  0000011    111211111


Q ss_pred             CCCCCccccCc----CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhhch
Q 015752          266 PPSRVSVIIGE----DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~----~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~  338 (401)
                      ....+......    +..++...+... ..++.-++|+|++.. +...++.|...+-.......+|+ ||....+...+.
T Consensus        90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~  169 (484)
T PRK14956         90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL  169 (484)
T ss_pred             ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence            11000000001    222233333221 235667999999987 77788888887765444555554 444444433331


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      . ....+.+.      ++  +.++..+.+.+.+..   ++..-.   .+....|+ .++|.+
T Consensus       170 S-RCq~~~f~------~l--s~~~i~~~L~~i~~~---Egi~~e---~eAL~~Ia~~S~Gd~  216 (484)
T PRK14956        170 S-RCQDFIFK------KV--PLSVLQDYSEKLCKI---ENVQYD---QEGLFWIAKKGDGSV  216 (484)
T ss_pred             h-hhheeeec------CC--CHHHHHHHHHHHHHH---cCCCCC---HHHHHHHHHHcCChH
Confidence            1 11223777      89  998888888887632   111111   33445566 666654

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.24  E-value=1.8e-05  Score=82.35  Aligned_cols=169  Identities=11%  Similarity=-0.015  Sum_probs=95.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .++||-+..+..|...+..+. -...+.++|..|+||||+|+.+.+...-...+       .+.++..-.....|...-.
T Consensus        16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g~~   87 (647)
T PRK07994         16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQGRF   87 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcCCC
Confidence            789999999998888886532 23456799999999999999987632111100       0011111122222211100


Q ss_pred             CCCCCccc---cCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752          266 PPSRVSVI---IGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~---~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~  338 (401)
                      .+..+...   ..- +..++...+... ..+++-++|||++.. +...++.|...+-......++|++|.+ +.+...+.
T Consensus        88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~  167 (647)
T PRK07994         88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL  167 (647)
T ss_pred             CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence            00000000   000 222222222221 246777999999987 677788888777665556666554444 44443331


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      . ....+++.      +|  +.++....+.+.+
T Consensus       168 S-RC~~~~f~------~L--s~~ei~~~L~~il  191 (647)
T PRK07994        168 S-RCLQFHLK------AL--DVEQIRQQLEHIL  191 (647)
T ss_pred             h-hheEeeCC------CC--CHHHHHHHHHHHH
Confidence            1 12333888      99  9999999988876

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.24  E-value=3.2e-05  Score=79.59  Aligned_cols=169  Identities=9%  Similarity=0.027  Sum_probs=90.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..++.|..++..+. -...+.++|++|+||||+|+.+..........      + ..++..-.....+...-.
T Consensus        16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~------~-~~pcg~C~~C~~i~~~~~   87 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGV------T-ATPCGVCSACLEIDSGRF   87 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC------C-CCCCCCCHHHHHHhcCCC
Confidence            788999999999988887532 23456789999999999999987632111100      0 001100000011100000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~  338 (401)
                      ........... ..+++...+...    ..+++-++|+|++.. .....+.|...+-+....+.+|++|.+. .+...+.
T Consensus        88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~  167 (527)
T PRK14969         88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL  167 (527)
T ss_pred             CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHH
Confidence            00000000001 222222222111    135677999999977 5667788888877655566666655443 3322210


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                       .....+++.      ++  +.++....+.+.+
T Consensus       168 -SRc~~~~f~------~l--~~~~i~~~L~~il  191 (527)
T PRK14969        168 -SRCLQFNLK------QM--PPPLIVSHLQHIL  191 (527)
T ss_pred             -HHHHHHhcC------CC--CHHHHHHHHHHHH
Confidence             011222777      88  8888888887766

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.24  E-value=2.2e-05  Score=77.32  Aligned_cols=156  Identities=10%  Similarity=0.063  Sum_probs=88.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc------ccccCeE-EEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV------KFYFDCH-AWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~-~wv~vs~~~~~~~~~~  258 (401)
                      .+++|.+...+.+.+++..+ .-...+.++|++|+||||+|+.+.+...-      ...|... +-+.......+ +.+.
T Consensus        17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~   94 (367)
T PRK14970         17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIR   94 (367)
T ss_pred             HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence            78899999999999988753 23457889999999999999998763211      0112111 11111111111 1111


Q ss_pred             HHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhh
Q 015752          259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLAS  336 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~  336 (401)
                      .+++.+...                    -..+++-++++|++.. ....++.+...+......+.+|++| ....+...
T Consensus        95 ~l~~~~~~~--------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~  154 (367)
T PRK14970         95 NLIDQVRIP--------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT  154 (367)
T ss_pred             HHHHHHhhc--------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence            222211100                    0124556899999865 4556777877775544455565554 33333222


Q ss_pred             chhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      .. .....++..      ++  ++++....+...+.
T Consensus       155 l~-sr~~~v~~~------~~--~~~~l~~~l~~~~~  181 (367)
T PRK14970        155 IL-SRCQIFDFK------RI--TIKDIKEHLAGIAV  181 (367)
T ss_pred             HH-hcceeEecC------Cc--cHHHHHHHHHHHHH
Confidence            21 111223788      88  99998888888763

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.24  E-value=2.8e-05  Score=79.49  Aligned_cols=169  Identities=9%  Similarity=-0.008  Sum_probs=91.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .++||-+..++.|.+++..+. -...+.++|++|+||||+|+.+.+...-...+.       ..+++.-.....|...-.
T Consensus        16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~g~~   87 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREIDEGRF   87 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHhcCCC
Confidence            789999999999999986532 234578999999999999998876321111110       000110011111100000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHH---H-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRD---Y-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~---~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~  338 (401)
                      .+.-+.+.... ..+++...+..   . ..++.-++|+|++.. .....+.|...+-+....+++|++|.+. .+...+.
T Consensus        88 ~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~  167 (509)
T PRK14958         88 PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVL  167 (509)
T ss_pred             ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHH
Confidence            00000000001 22222222211   1 135666899999987 6777888888877766677777655443 3332221


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      . ....+++.      ++  +.++-...+...+
T Consensus       168 S-Rc~~~~f~------~l--~~~~i~~~l~~il  191 (509)
T PRK14958        168 S-RCLQFHLA------QL--PPLQIAAHCQHLL  191 (509)
T ss_pred             H-HhhhhhcC------CC--CHHHHHHHHHHHH
Confidence            0 11222677      88  8888777766665

>TIGR00767 rho transcription termination factor Rho

Probab=98.20  E-value=4.5e-06  Score=81.49  Aligned_cols=93  Identities=10%  Similarity=-0.003  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC--CCHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD--YDFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSIL  285 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l  285 (401)
                      ..++|+|++|+|||||++.+++..... +|+..+|+.+.+.  .++.++++.+...+-......+....  -........
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A  247 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA  247 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence            468899999999999999999854333 7999999998865  78899999885443322111000000  011122222


Q ss_pred             HHH-cCCceEEEEEeCCCC
Q 015752          286 RDY-LTNKKYFIVLDDVFD  303 (401)
Q Consensus       286 ~~~-L~~kr~LlVlDdv~~  303 (401)
                      ..+ -+|++.+|++|.+..
T Consensus       248 e~~~~~GkdVVLlIDEitR  266 (415)
T TIGR00767       248 KRLVEHKKDVVILLDSITR  266 (415)
T ss_pred             HHHHHcCCCeEEEEEChhH
Confidence            222 268999999999853

Members of this family differ in the specificity of RNA binding.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.20  E-value=3e-05  Score=80.62  Aligned_cols=194  Identities=8%  Similarity=-0.084  Sum_probs=103.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC--eEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.........  ...+    ..+..-...+.|...
T Consensus        24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~g   98 (598)
T PRK09111         24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIMEG   98 (598)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhcC
Confidence            789999999999999887532 344678999999999999999976321111100  0000    000100111112111


Q ss_pred             cCCCCCCccccCc-CHHH---HHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhh
Q 015752          264 VIPPSRVSVIIGE-DYQL---KKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLAS  336 (401)
Q Consensus       264 l~~~~~~~~~~~~-~~~~---l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~  336 (401)
                      ...+-........ ..++   +.+.+... ..+++-++|+|++.. +....+.|...+-+...++++|+ ||....+...
T Consensus        99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t  178 (598)
T PRK09111         99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT  178 (598)
T ss_pred             CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence            1110000000001 2222   22222211 124556799999976 56677888887776556666655 4444444433


Q ss_pred             chhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      +.. ....+.+.      ++  +.++....+.+.+...   +....   .+....|+ .|+|++
T Consensus       179 I~S-Rcq~~~f~------~l--~~~el~~~L~~i~~ke---gi~i~---~eAl~lIa~~a~Gdl  227 (598)
T PRK09111        179 VLS-RCQRFDLR------RI--EADVLAAHLSRIAAKE---GVEVE---DEALALIARAAEGSV  227 (598)
T ss_pred             HHh-heeEEEec------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence            311 11233788      89  9999998888876421   11111   23445556 666654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.19  E-value=1.5e-05  Score=71.68  Aligned_cols=166  Identities=13%  Similarity=0.059  Sum_probs=86.8

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+|+|-+.-++.+.-.+..   ..+.+.-+.+||++|+||||||.-+.+  .....|.   +++.+. ..          
T Consensus        24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~----------   87 (233)
T PF05496_consen   24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IE----------   87 (233)
T ss_dssp             CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC-------------
T ss_pred             HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hh----------
Confidence            8999988888776555432   345677888999999999999999998  4444442   222211 11          


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC--------C-----------CCc
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD--------E-----------NGS  322 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~--------~-----------~gs  322 (401)
                                    ...++...+.. + +++-+|.+|.++. +...-+.|..++-++        +           +-+
T Consensus        88 --------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT  151 (233)
T PF05496_consen   88 --------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT  151 (233)
T ss_dssp             --------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred             --------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence                          11222222222 1 2345777788876 443334444332221        1           122


Q ss_pred             EEEEecCChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCC
Q 015752          323 RVFITVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSY  398 (401)
Q Consensus       323 ~iivTTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~  398 (401)
                      -|=.|||...+..-.. ....-+ +++      ..  +.+|-.++..+.+.-...+-      -++.+.+|+ .|.|-
T Consensus       152 ligATTr~g~ls~pLr-dRFgi~~~l~------~Y--~~~el~~Iv~r~a~~l~i~i------~~~~~~~Ia~rsrGt  214 (233)
T PF05496_consen  152 LIGATTRAGLLSSPLR-DRFGIVLRLE------FY--SEEELAKIVKRSARILNIEI------DEDAAEEIARRSRGT  214 (233)
T ss_dssp             EEEEESSGCCTSHCCC-TTSSEEEE------------THHHHHHHHHHCCHCTT-EE-------HHHHHHHHHCTTTS
T ss_pred             EeeeeccccccchhHH-hhcceecchh------cC--CHHHHHHHHHHHHHHhCCCc------CHHHHHHHHHhcCCC
Confidence            3445888655544331 123334 788      88  99999999988774322221      267788888 88774

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.19  E-value=3.2e-05  Score=83.07  Aligned_cols=167  Identities=8%  Similarity=-0.055  Sum_probs=93.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-.....       ...+..-...+.|... .
T Consensus        15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g-~   85 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPG-G   85 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcC-C
Confidence            789999999999999887532 234678999999999999999876322111110       0001100111111100 0


Q ss_pred             CCCCCc---cccCc-CHHHHHH---HHHH-HcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHh
Q 015752          266 PPSRVS---VIIGE-DYQLKKS---ILRD-YLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLA  335 (401)
Q Consensus       266 ~~~~~~---~~~~~-~~~~l~~---~l~~-~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~  335 (401)
                      ......   ..... ..+++..   .+.. -..++.-++|||++.. ....++.|...+-+....+.+|++| ....+..
T Consensus        86 ~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~  165 (824)
T PRK07764         86 PGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG  165 (824)
T ss_pred             CCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence            000000   00000 2222222   2111 1235566889999987 6778888888888766666666544 4444544


Q ss_pred             hchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          336 SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       336 ~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      .+.  ..-.+ ++.      ++  +.++..+.+.+.+
T Consensus       166 TIr--SRc~~v~F~------~l--~~~~l~~~L~~il  192 (824)
T PRK07764        166 TIR--SRTHHYPFR------LV--PPEVMRGYLERIC  192 (824)
T ss_pred             HHH--hheeEEEee------CC--CHHHHHHHHHHHH
Confidence            431  22233 777      88  8888888887765

>CHL00181 cbbX CbbX; Provisional

Probab=98.19  E-value=7.2e-05  Score=71.02  Aligned_cols=159  Identities=11%  Similarity=0.075  Sum_probs=84.4

Q ss_pred             CccccccccHHHHHHHH---hc-------C---CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC
Q 015752          186 LDISHFERGREELFDLL---IE-------G---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD  252 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L---~~-------~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~  252 (401)
                      .+++|.+..+++|.++.   .-       +   ......+.++|++|+||||+|+.+++.......-...-|+.++.   
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---   99 (287)
T CHL00181         23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---   99 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH---
Confidence            35788777766554432   11       0   11223477899999999999999976211111111112444431   


Q ss_pred             HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC----------CchhHHHHHhhCCCCCCCc
Q 015752          253 FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------DSEIWIDVEELLPDDENGS  322 (401)
Q Consensus       253 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs  322 (401)
                       ..+    .....+.         ........+.+ ..  .-+|+||++..          ..+..+.|...+.+...+.
T Consensus       100 -~~l----~~~~~g~---------~~~~~~~~l~~-a~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~  162 (287)
T CHL00181        100 -DDL----VGQYIGH---------TAPKTKEVLKK-AM--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDL  162 (287)
T ss_pred             -HHH----HHHHhcc---------chHHHHHHHHH-cc--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence             122    2222111         11222222222 22  24899999853          0223344555555555567


Q ss_pred             EEEEecCChhHHhhc------hhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          323 RVFITVTDPDLLASL------EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       323 ~iivTTR~~~v~~~~------~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +||+++....+....      .......+.++      ++  +.+|..+++...+.
T Consensus       163 ~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~------~~--t~~el~~I~~~~l~  210 (287)
T CHL00181        163 VVIFAGYKDRMDKFYESNPGLSSRIANHVDFP------DY--TPEELLQIAKIMLE  210 (287)
T ss_pred             EEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC------Cc--CHHHHHHHHHHHHH
Confidence            777787654432211      01122334788      99  99999999998873

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.18  E-value=2.6e-05  Score=81.43  Aligned_cols=192  Identities=8%  Similarity=-0.013  Sum_probs=104.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+........      .-...++.......|.....
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~~   88 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGSA   88 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCCC
Confidence            789999999999988887532 23556799999999999999998632111100      00011222223333332221


Q ss_pred             CCCCCccccCc-CHHHHH---HHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKK---SILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~---~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~  338 (401)
                      ...-+...... ..+++.   ..+... ..+++-++|||++.. ..+..+.|...+.+....+.+|++|.+ ..+...+.
T Consensus        89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~  168 (585)
T PRK14950         89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL  168 (585)
T ss_pred             CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence            11000000011 222222   222111 124667899999976 466778888777765556666665543 33433321


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                       .....+.+.      ++  +.++....+.+.+......  ..    .+....|+ .|+|.+
T Consensus       169 -SR~~~i~f~------~l--~~~el~~~L~~~a~~egl~--i~----~eal~~La~~s~Gdl  215 (585)
T PRK14950        169 -SRCQRFDFH------RH--SVADMAAHLRKIAAAEGIN--LE----PGALEAIARAATGSM  215 (585)
T ss_pred             -hccceeeCC------CC--CHHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHcCCCH
Confidence             111223777      88  8988888888876421111  11    34455666 666654

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.16  E-value=5.2e-05  Score=78.47  Aligned_cols=170  Identities=9%  Similarity=-0.039  Sum_probs=94.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..++.|..++..+ .-...+.++|+.|+||||+|+.+.+...-.+..+       ..+++.-.....|...-.
T Consensus        13 ~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~   84 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGP   84 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccC
Confidence            78999999999999988753 2344578999999999999999876321111100       001111111111111000


Q ss_pred             CCCCC--ccccCc----CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhh
Q 015752          266 PPSRV--SVIIGE----DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLAS  336 (401)
Q Consensus       266 ~~~~~--~~~~~~----~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~  336 (401)
                      ....-  .+....    +..++.+.+... ..+++-++|+|++.. .....+.|...+......+.+|+ ||....+...
T Consensus        85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T  164 (584)
T PRK14952         85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT  164 (584)
T ss_pred             CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence            00000  000000    222222222221 135666899999977 67788888888877655666555 5554555444


Q ss_pred             chhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +.. ....+++.      ++  +.++..+.+.+.+.
T Consensus       165 I~S-Rc~~~~F~------~l--~~~~i~~~L~~i~~  191 (584)
T PRK14952        165 IRS-RTHHYPFR------LL--PPRTMRALIARICE  191 (584)
T ss_pred             HHH-hceEEEee------CC--CHHHHHHHHHHHHH
Confidence            311 12333788      88  99988888877663

>PRK09087 hypothetical protein; Validated

Probab=98.15  E-value=2.3e-05  Score=71.74  Aligned_cols=111  Identities=15%  Similarity=0.156  Sum_probs=67.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      .+.+.|+|++|+|||+|++.+++...       ..+++..      .+..+++.                         .
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~-------------------------~   85 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN-------------------------A   85 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH-------------------------h
Confidence            45689999999999999999887321       1133221      11111111                         1


Q ss_pred             cCCceEEEEEeCCCC---CchhHHHHHhhCCCCCCCcEEEEecCC---------hhHHhhchhCCCcce-ecccccCCCC
Q 015752          289 LTNKKYFIVLDDVFD---DSEIWIDVEELLPDDENGSRVFITVTD---------PDLLASLEMENGEKI-RLDSVLFGGP  355 (401)
Q Consensus       289 L~~kr~LlVlDdv~~---~~~~~~~l~~~l~~~~~gs~iivTTR~---------~~v~~~~~~~~~~~~-~l~~~~~~~~  355 (401)
                      +.+  -+|++||+..   +.+.+-.+...+.+  .|..||+|++.         +++...+   ....+ +++      +
T Consensus        86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl---~~gl~~~l~------~  152 (226)
T PRK09087         86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRL---KAATVVEIG------E  152 (226)
T ss_pred             hhc--CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHH---hCCceeecC------C
Confidence            111  2788899954   23333334333332  36779998874         3334443   33445 999      9


Q ss_pred             CCCChHHHHHHHHHhhC
Q 015752          356 LIRLKHEAWQFFILHYG  372 (401)
Q Consensus       356 L~~~~~ea~~Lf~~~a~  372 (401)
                      +  +.++-.+++.+++.
T Consensus       153 p--d~e~~~~iL~~~~~  167 (226)
T PRK09087        153 P--DDALLSQVIFKLFA  167 (226)
T ss_pred             C--CHHHHHHHHHHHHH
Confidence            9  99999999999884

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.13  E-value=6e-05  Score=78.81  Aligned_cols=175  Identities=9%  Similarity=0.042  Sum_probs=102.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc---------------------ccccCeEEE
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV---------------------KFYFDCHAW  244 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~w  244 (401)
                      .+++|-+...+.|..++..+ .-...+.++|+.|+||||+|+.+......                     ..+|+. ..
T Consensus        17 ~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~   94 (614)
T PRK14971         17 ESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE   94 (614)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence            78999999999999988753 23456789999999999999887652210                     012221 11


Q ss_pred             EEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752          245 VRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR  323 (401)
Q Consensus       245 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~  323 (401)
                      +..+....+.. ++.++.++...                   - ..+++=++|+|++.. +...++.|...+.....++.
T Consensus        95 ld~~~~~~vd~-Ir~li~~~~~~-------------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti  153 (614)
T PRK14971         95 LDAASNNSVDD-IRNLIEQVRIP-------------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI  153 (614)
T ss_pred             ecccccCCHHH-HHHHHHHHhhC-------------------c-ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence            11111111111 11111211111                   0 124556889999877 67778888888877666666


Q ss_pred             EEE-ecCChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          324 VFI-TVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       324 iiv-TTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      +|+ ||....+...+  ...-.+ ++.      ++  ++++....+.+.+...   +....   .+....|+ .|+|.+
T Consensus       154 fIL~tt~~~kIl~tI--~SRc~iv~f~------~l--s~~ei~~~L~~ia~~e---gi~i~---~~al~~La~~s~gdl  216 (614)
T PRK14971        154 FILATTEKHKILPTI--LSRCQIFDFN------RI--QVADIVNHLQYVASKE---GITAE---PEALNVIAQKADGGM  216 (614)
T ss_pred             EEEEeCCchhchHHH--HhhhheeecC------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence            655 54545554443  122233 788      99  9999988888876421   11111   23445666 667654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.12  E-value=2.6e-05  Score=75.11  Aligned_cols=147  Identities=14%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.  ...   ....++.+. ... ..++..+..+.
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~-~~i~~~l~~~~   92 (316)
T PHA02544         21 DECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRI-DFVRNRLTRFA   92 (316)
T ss_pred             HHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccH-HHHHHHHHHHH
Confidence            78899999999999988753 34567778999999999999999873  221   123333333 111 11111111110


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCC
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-SEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENG  342 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~  342 (401)
                      ..                  . -+.+.+-+||+|++.. . ......+...+.....++++|+||.... +..... ...
T Consensus        93 ~~------------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~-sR~  152 (316)
T PHA02544         93 ST------------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR-SRC  152 (316)
T ss_pred             Hh------------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH-hhc
Confidence            00                  0 0113456789999975 1 2233444444444456778888887543 222221 011


Q ss_pred             cceecccccCCCCCCCChHHHHHHHH
Q 015752          343 EKIRLDSVLFGGPLIRLKHEAWQFFI  368 (401)
Q Consensus       343 ~~~~l~~~~~~~~L~~~~~ea~~Lf~  368 (401)
                      ..+.++      ..  +.++...++.
T Consensus       153 ~~i~~~------~p--~~~~~~~il~  170 (316)
T PHA02544        153 RVIDFG------VP--TKEEQIEMMK  170 (316)
T ss_pred             eEEEeC------CC--CHHHHHHHHH
Confidence            223665      56  7777665544

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.11  E-value=7e-05  Score=71.09  Aligned_cols=158  Identities=12%  Similarity=0.090  Sum_probs=83.7

Q ss_pred             ccccccccHHHHHHHHh---c-------C---CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCH
Q 015752          187 DISHFERGREELFDLLI---E-------G---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDF  253 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  253 (401)
                      .++|.++.+++|.++..   -       +   .....-+.++|++|.|||++|+.++.-..........-|+.++.    
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----   98 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----   98 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence            46777776666544321   1       0   11122577999999999999977765211111111112444432    


Q ss_pred             HHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcE
Q 015752          254 RRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------DSEIWIDVEELLPDDENGSR  323 (401)
Q Consensus       254 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~  323 (401)
                      .+    ++..+.+.         +.......+.+ .  ..-+|+||++..          ..+.+..|...+.....+.+
T Consensus        99 ~~----l~~~~~g~---------~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~  162 (284)
T TIGR02880        99 DD----LVGQYIGH---------TAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV  162 (284)
T ss_pred             HH----HhHhhccc---------chHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence            12    22222221         12222222222 2  235889999862          02334556666655555667


Q ss_pred             EEEecCChhHHhhch------hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          324 VFITVTDPDLLASLE------MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       324 iivTTR~~~v~~~~~------~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ||.++..........      ......+.++      ++  +++|-..++...+.
T Consensus       163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp------~l--~~edl~~I~~~~l~  209 (284)
T TIGR02880       163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFP------DY--SEAELLVIAGLMLK  209 (284)
T ss_pred             EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeC------Cc--CHHHHHHHHHHHHH
Confidence            777776543322110      0012344888      99  99999999998874

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.10  E-value=2.2e-05  Score=71.64  Aligned_cols=155  Identities=13%  Similarity=0.152  Sum_probs=86.1

Q ss_pred             Ccc-ccc-cccHHHHHHHHhcC-CCCceEEEEEcCCCCchHHHHHHhhcccCcccccC--eEEEEEcCCCCCHHHHHHHH
Q 015752          186 LDI-SHF-ERGREELFDLLIEG-SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSLDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~-vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i  260 (401)
                      .+| +|- ....-.....+... +.....+.|+|..|+|||.|.+.+++  ......+  .++++      +..++...+
T Consensus         8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~   79 (219)
T PF00308_consen    8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREF   79 (219)
T ss_dssp             CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHH
T ss_pred             ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHH
Confidence            344 464 23333444445443 33345688999999999999999998  4433222  35555      345555566


Q ss_pred             HHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHH-HhhCCC-CCCCcEEEEecCCh-----
Q 015752          261 IKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDV-EELLPD-DENGSRVFITVTDP-----  331 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l-~~~l~~-~~~gs~iivTTR~~-----  331 (401)
                      ...+...         ..    ..+.+.+. .-=+|+|||+..  ....|... ...+.. ...|.+||+|+...     
T Consensus        80 ~~~~~~~---------~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~  145 (219)
T PF00308_consen   80 ADALRDG---------EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS  145 (219)
T ss_dssp             HHHHHTT---------SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred             HHHHHcc---------cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence            5554332         22    22334444 345789999976  23334332 222221 13467899999654     


Q ss_pred             ----hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          332 ----DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       332 ----~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                          ++.+.+  .....++++      ++  +.++-..++.+++.
T Consensus       146 ~~~~~L~SRl--~~Gl~~~l~------~p--d~~~r~~il~~~a~  180 (219)
T PF00308_consen  146 GLLPDLRSRL--SWGLVVELQ------PP--DDEDRRRILQKKAK  180 (219)
T ss_dssp             TS-HHHHHHH--HCSEEEEE------------HHHHHHHHHHHHH
T ss_pred             ccChhhhhhH--hhcchhhcC------CC--CHHHHHHHHHHHHH
Confidence                223333  233333999      99  99999999999984

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.09  E-value=6e-05  Score=74.81  Aligned_cols=156  Identities=15%  Similarity=0.145  Sum_probs=88.0

Q ss_pred             CccccccccHHHHHHHHhc---C--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE---G--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|+++.++++.+.+..   .        -...+-|.++|++|+|||++|+.+++  .....     |+.++.    .
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~----~  199 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG----S  199 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh----H
Confidence            7789999999999887632   1        13355688999999999999999998  33322     222211    1


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-C-----------chhHHHHHhhC---CC-
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-D-----------SEIWIDVEELL---PD-  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l---~~-  317 (401)
                      .+    .....+          ........+.+.. ...+.+|+||++.. -           .+....+...+   .. 
T Consensus       200 ~l----~~~~~g----------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~  265 (389)
T PRK03992        200 EL----VQKFIG----------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF  265 (389)
T ss_pred             HH----hHhhcc----------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence            11    111111          1111222222222 34678999999864 0           11112232222   21 


Q ss_pred             -CCCCcEEEEecCChhHHhhchh--CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752          318 -DENGSRVFITVTDPDLLASLEM--ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (401)
Q Consensus       318 -~~~gs~iivTTR~~~v~~~~~~--~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~  374 (401)
                       ...+..||.||...+.....-.  +..+.. .++      +.  +.++..++|..++...
T Consensus       266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~------~P--~~~~R~~Il~~~~~~~  318 (389)
T PRK03992        266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVP------LP--DEEGRLEILKIHTRKM  318 (389)
T ss_pred             CCCCCEEEEEecCChhhCCHHHcCCccCceEEEEC------CC--CHHHHHHHHHHHhccC
Confidence             1235667777776543221100  122344 888      88  9999999999887543

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.07  E-value=0.00015  Score=68.17  Aligned_cols=195  Identities=13%  Similarity=0.103  Sum_probs=111.4

Q ss_pred             ccHHHHHHHHhcC-CCCceEEEEEcCCCCchHHHHHHhhcccCcc--cc--cCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752          193 RGREELFDLLIEG-SSGLSVVAILDSGGFDKTAFAADTYNNNHVK--FY--FDCHAWVRVSLDYDFRRILDDIIKSVIPP  267 (401)
Q Consensus       193 ~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~  267 (401)
                      +.+++|.+.|... .....-+.|+|.+|.|||++++++....-..  ..  --.++.+.....++...+...|+.+++.+
T Consensus        44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            3345555555442 4456789999999999999999998531111  11  11466677888999999999999999987


Q ss_pred             CCCccccCcCHHHHHHHHHHHcCC-ceEEEEEeCCCC--C--c---hhHHHHHhhCCCCCCCcEEEEecCChhHHhhch-
Q 015752          268 SRVSVIIGEDYQLKKSILRDYLTN-KKYFIVLDDVFD--D--S---EIWIDVEELLPDDENGSRVFITVTDPDLLASLE-  338 (401)
Q Consensus       268 ~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~--~--~---~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~-  338 (401)
                      ...    ......+.......|+. +-=+||+|.+.+  .  .   .+.-.....|.+.-.=+-|.+-|++-.-+-... 
T Consensus       124 ~~~----~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~  199 (302)
T PF05621_consen  124 YRP----RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP  199 (302)
T ss_pred             cCC----CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence            432    11444555555556643 555899999976  1  1   111222233333223345566665432211110 


Q ss_pred             -h-CCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          339 -M-ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       339 -~-~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                       + +....+.++      +- ...+|...|+...-...|...... -...++++.|. .|+|..
T Consensus       200 QLa~RF~~~~Lp------~W-~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~i  255 (302)
T PF05621_consen  200 QLASRFEPFELP------RW-ELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLI  255 (302)
T ss_pred             HHHhccCCccCC------CC-CCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCch
Confidence             0 011111333      33 245666777766554444433222 22378899999 888864

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.06  E-value=0.00015  Score=71.18  Aligned_cols=173  Identities=12%  Similarity=0.058  Sum_probs=96.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeE------EEEEcCCCCCHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCH------AWVRVSLDYDFRRILDD  259 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~------~wv~vs~~~~~~~~~~~  259 (401)
                      .+++|-+...+.|.+.+..+ .-...+.++|+.|+||+|+|..+.+..--.......      .-..+...+.   ..+.
T Consensus        19 ~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~---~c~~   94 (365)
T PRK07471         19 TALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP---VARR   94 (365)
T ss_pred             hhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh---HHHH
Confidence            78999999999999888763 234468899999999999997775521111100000      0000000010   1111


Q ss_pred             HHHHcCCC-------CCCc-cc-cCc-CHHHHHHHHHHHcC-----CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752          260 IIKSVIPP-------SRVS-VI-IGE-DYQLKKSILRDYLT-----NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR  323 (401)
Q Consensus       260 i~~~l~~~-------~~~~-~~-~~~-~~~~l~~~l~~~L~-----~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~  323 (401)
                      +...-.++       ..+. .. ... ..+++. .+.+.+.     +.+-++|+|++.. +......|...+-....++.
T Consensus        95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~  173 (365)
T PRK07471         95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL  173 (365)
T ss_pred             HHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence            11100000       0000 00 011 233332 3333332     4667899999987 77788888877776556677


Q ss_pred             EEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          324 VFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       324 iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +|++|.+.+ +...+. .....+.+.      +|  +.++..+++.+..+
T Consensus       174 ~IL~t~~~~~llpti~-SRc~~i~l~------~l--~~~~i~~~L~~~~~  214 (365)
T PRK07471        174 FLLVSHAPARLLPTIR-SRCRKLRLR------PL--APEDVIDALAAAGP  214 (365)
T ss_pred             EEEEECCchhchHHhh-ccceEEECC------CC--CHHHHHHHHHHhcc
Confidence            777777654 333331 122333888      99  99999999988754

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.06  E-value=8.3e-05  Score=77.00  Aligned_cols=170  Identities=8%  Similarity=-0.002  Sum_probs=92.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+...-.....       ...++.-...+.|.....
T Consensus        16 ~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h   87 (624)
T PRK14959         16 AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH   87 (624)
T ss_pred             HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence            67899888777777777643 2246778899999999999999887322111000       001111111112211110


Q ss_pred             CCCCCccccCc-CHH---HHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752          266 PPSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~---~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~  338 (401)
                      ........... ..+   .+...+... ..+++-+||||++.. +...++.|...+........+|++|.+ ..+...+.
T Consensus        88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~  167 (624)
T PRK14959         88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV  167 (624)
T ss_pred             CceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence            00000000000 112   222222211 235667999999977 567778888887654445666665544 44443331


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      . ....+++.      ++  +.++....+.+.+.
T Consensus       168 S-Rcq~i~F~------pL--s~~eL~~~L~~il~  192 (624)
T PRK14959        168 S-RCQHFTFT------RL--SEAGLEAHLTKVLG  192 (624)
T ss_pred             h-hhhccccC------CC--CHHHHHHHHHHHHH
Confidence            1 11233777      99  99999888887663

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.04  E-value=9.9e-05  Score=67.61  Aligned_cols=143  Identities=12%  Similarity=0.088  Sum_probs=73.2

Q ss_pred             Cccc-cccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDIS-HFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~v-Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      ++|+ |...........+.........+.|+|.+|+|||+||+.+++.  ....-....+++.....      ..+    
T Consensus        18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~------~~~----   85 (227)
T PRK08903         18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPL------LAF----   85 (227)
T ss_pred             cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhH------HHH----
Confidence            5555 4444433333333222233457889999999999999999883  21111123444332211      000    


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC-CCCc-EEEEecCChhHHhhc----
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD-ENGS-RVFITVTDPDLLASL----  337 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs-~iivTTR~~~v~~~~----  337 (401)
                                            ... ...-+||+||+.. +...-..|...+... ..+. .+|+|++........    
T Consensus        86 ----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L  142 (227)
T PRK08903         86 ----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL  142 (227)
T ss_pred             ----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence                                  011 2334789999965 333323444444321 2333 466676654322211    


Q ss_pred             --hhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          338 --EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       338 --~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                        +......+.+.      ||  ++++-..++.+.+
T Consensus       143 ~sr~~~~~~i~l~------pl--~~~~~~~~l~~~~  170 (227)
T PRK08903        143 RTRLGWGLVYELK------PL--SDADKIAALKAAA  170 (227)
T ss_pred             HHHHhcCeEEEec------CC--CHHHHHHHHHHHH
Confidence              00112333888      99  8887777776644

>PRK05642 DNA replication initiation factor; Validated

Probab=98.03  E-value=8.6e-05  Score=68.44  Aligned_cols=121  Identities=14%  Similarity=0.224  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      ..+.|+|..|+|||.|++.+++  .....-..++|++...      +...                  .    ..+.+.+
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~------------------~----~~~~~~~   95 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR------------------G----PELLDNL   95 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh------------------h----HHHHHhh
Confidence            5788999999999999999987  3332223456665432      1110                  0    1122222


Q ss_pred             CCceEEEEEeCCCC--CchhHHH-HHhhCCC-CCCCcEEEEecCChhHH---------hhchhCCCcce-ecccccCCCC
Q 015752          290 TNKKYFIVLDDVFD--DSEIWID-VEELLPD-DENGSRVFITVTDPDLL---------ASLEMENGEKI-RLDSVLFGGP  355 (401)
Q Consensus       290 ~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~-~~~gs~iivTTR~~~v~---------~~~~~~~~~~~-~l~~~~~~~~  355 (401)
                      .+-. +||+||+..  ....|.. +...+.. ...|..+|+|++...-.         +.+   ....+ +++      +
T Consensus        96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl---~~gl~~~l~------~  165 (234)
T PRK05642         96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL---TLALVFQMR------G  165 (234)
T ss_pred             hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHH---hcCeeeecC------C
Confidence            2222 688999964  1335544 3333321 13467889988764321         111   22344 788      9


Q ss_pred             CCCChHHHHHHHHHhhC
Q 015752          356 LIRLKHEAWQFFILHYG  372 (401)
Q Consensus       356 L~~~~~ea~~Lf~~~a~  372 (401)
                      +  +.++-..++..++.
T Consensus       166 ~--~~e~~~~il~~ka~  180 (234)
T PRK05642        166 L--SDEDKLRALQLRAS  180 (234)
T ss_pred             C--CHHHHHHHHHHHHH
Confidence            9  99999999997763

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.01  E-value=0.00024  Score=72.38  Aligned_cols=154  Identities=8%  Similarity=0.007  Sum_probs=90.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc---cc----------------ccCeEEEEE
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV---KF----------------YFDCHAWVR  246 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~F~~~~wv~  246 (401)
                      .+++|-+.....|..++..+. -.....++|+.|+||||+|+.++....-   ..                .|...+++.
T Consensus        16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid   94 (486)
T PRK14953         16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID   94 (486)
T ss_pred             HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence            788999999999999887532 3345678999999999999988762110   00                011111111


Q ss_pred             cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 015752          247 VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRV  324 (401)
Q Consensus       247 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~i  324 (401)
                      .+....+.                      +...+.+.+... ..+++-++|+|++.. .....+.|...+......+.+
T Consensus        95 aas~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~  152 (486)
T PRK14953         95 AASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF  152 (486)
T ss_pred             CccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence            11110000                      122222222211 135677999999976 466677888777765555555


Q ss_pred             EEec-CChhHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          325 FITV-TDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       325 ivTT-R~~~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      |++| +...+..... .....+.+.      ++  +.++-...+.+.+
T Consensus       153 Il~tt~~~kl~~tI~-SRc~~i~f~------~l--s~~el~~~L~~i~  191 (486)
T PRK14953        153 ILCTTEYDKIPPTIL-SRCQRFIFS------KP--TKEQIKEYLKRIC  191 (486)
T ss_pred             EEEECCHHHHHHHHH-HhceEEEcC------CC--CHHHHHHHHHHHH
Confidence            5544 4334433221 012233888      89  9999888888766

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.00  E-value=7.1e-05  Score=70.19  Aligned_cols=159  Identities=9%  Similarity=0.026  Sum_probs=81.0

Q ss_pred             CccccccccHHHHHHH---Hhc----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC
Q 015752          186 LDISHFERGREELFDL---LIE----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD  252 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~---L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~  252 (401)
                      ..++|.+..++++.+.   +.-          ..+...-+.++|++|+||||+|+.+++...-...-....++.++.   
T Consensus         6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---   82 (261)
T TIGR02881         6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---   82 (261)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence            3578887777666433   211          123455678999999999999999976210000001111222211   


Q ss_pred             HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C--------chhHHHHHhhCCCCCCCcE
Q 015752          253 FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D--------SEIWIDVEELLPDDENGSR  323 (401)
Q Consensus       253 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------~~~~~~l~~~l~~~~~gs~  323 (401)
                       .++    .....+.         ........+.+. .  .-+|+||++.. .        .+..+.+...+.+......
T Consensus        83 -~~l----~~~~~g~---------~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~  145 (261)
T TIGR02881        83 -ADL----VGEYIGH---------TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV  145 (261)
T ss_pred             -HHh----hhhhccc---------hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence             111    1111111         222222223222 2  34889999964 1        1234445555544443445


Q ss_pred             EEEecCChhHHh------hchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          324 VFITVTDPDLLA------SLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       324 iivTTR~~~v~~------~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +|+++...+...      .........+.++      ++  +.++-.+++.+.+.
T Consensus       146 vila~~~~~~~~~~~~~p~L~sRf~~~i~f~------~~--~~~el~~Il~~~~~  192 (261)
T TIGR02881       146 LILAGYSDEMDYFLSLNPGLRSRFPISIDFP------DY--TVEELMEIAERMVK  192 (261)
T ss_pred             EEecCCcchhHHHHhcChHHHhccceEEEEC------CC--CHHHHHHHHHHHHH
Confidence            566655433211      1100112223778      99  99999999998874

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.00  E-value=0.0002  Score=72.35  Aligned_cols=153  Identities=11%  Similarity=0.023  Sum_probs=89.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc---------------------ccCeEEE
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF---------------------YFDCHAW  244 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~w  244 (401)
                      .+++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+.+...-..                     +++ .++
T Consensus        17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~   94 (451)
T PRK06305         17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE   94 (451)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence            789999999999998886532 235677899999999999988865211110                     011 111


Q ss_pred             EEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 015752          245 VRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGS  322 (401)
Q Consensus       245 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs  322 (401)
                      +.-.......                      +..++...+... ..+++-++|+|++.. .....+.|...+.+....+
T Consensus        95 i~g~~~~gid----------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~  152 (451)
T PRK06305         95 IDGASHRGIE----------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV  152 (451)
T ss_pred             eeccccCCHH----------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence            1100000000                      111111111111 125667899999865 4556677877777655566


Q ss_pred             EEEEecC-ChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          323 RVFITVT-DPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       323 ~iivTTR-~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      .+|++|. ...+...+.  ..-.+ ++.      ++  ++++....+.+.+.
T Consensus       153 ~~Il~t~~~~kl~~tI~--sRc~~v~f~------~l--~~~el~~~L~~~~~  194 (451)
T PRK06305        153 KFFLATTEIHKIPGTIL--SRCQKMHLK------RI--PEETIIDKLALIAK  194 (451)
T ss_pred             eEEEEeCChHhcchHHH--HhceEEeCC------CC--CHHHHHHHHHHHHH
Confidence            6666553 333332221  12233 888      99  99998888887763

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.99  E-value=0.00028  Score=72.19  Aligned_cols=191  Identities=10%  Similarity=-0.028  Sum_probs=100.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+...+.|...+..+ .-.....++|+.|+||||+|+.+.+..--...-+.       .++..-.....+.....
T Consensus        14 deiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~h   85 (535)
T PRK08451         14 DELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENRH   85 (535)
T ss_pred             HHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcCC
Confidence            78999888888888888653 23456689999999999999977652110000000       00000000000000000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~  338 (401)
                      ...-+...... ..+++...+...    ..+++-++|+|++.. +.+..+.|...+-.....+++|++|.+. .+.....
T Consensus        86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~  165 (535)
T PRK08451         86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL  165 (535)
T ss_pred             CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence            00000000000 122232222211    124566899999977 6777788887776655667777666553 2222221


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      . ....+++.      ++  +.++....+.+.+...   +....   .+....|+ .++|.+
T Consensus       166 S-Rc~~~~F~------~L--s~~ei~~~L~~Il~~E---Gi~i~---~~Al~~Ia~~s~Gdl  212 (535)
T PRK08451        166 S-RTQHFRFK------QI--PQNSIISHLKTILEKE---GVSYE---PEALEILARSGNGSL  212 (535)
T ss_pred             h-hceeEEcC------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCcH
Confidence            1 11233888      99  9999988888776421   11111   33445566 666654

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.99  E-value=0.00015  Score=69.47  Aligned_cols=113  Identities=17%  Similarity=0.223  Sum_probs=80.4

Q ss_pred             CccccccccHHHHHHHHhcCCCC-ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSG-LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      +.+.+|+.....+...+...+.. +..|-|.|-.|.|||.+.+.+++..  .   -..+|++.-..++..-++..|+.+.
T Consensus         6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~~   80 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNKS   80 (438)
T ss_pred             cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHHh
Confidence            67889999999999988775543 3455899999999999999999843  2   2368999999999999999999999


Q ss_pred             CCCCCCccccCc---CHHHHHHHHHHH--c--CCceEEEEEeCCCC
Q 015752          265 IPPSRVSVIIGE---DYQLKKSILRDY--L--TNKKYFIVLDDVFD  303 (401)
Q Consensus       265 ~~~~~~~~~~~~---~~~~l~~~l~~~--L--~~kr~LlVlDdv~~  303 (401)
                      ............   ........+.++  .  .++.++|||||+..
T Consensus        81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~  126 (438)
T KOG2543|consen   81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA  126 (438)
T ss_pred             ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence            633222101110   222233333332  1  14689999999976

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.97  E-value=0.00013  Score=72.90  Aligned_cols=135  Identities=15%  Similarity=0.170  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      ...+.|+|.+|+|||+|++.+++  .+....  ..+++++.      .++...+...+...         .....    .
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~----~  194 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN---------KMEEF----K  194 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC---------CHHHH----H
Confidence            35688999999999999999998  443332  24555543      34444555544322         22222    2


Q ss_pred             HHcCCceEEEEEeCCCC-C-chhH-HHHHhhCCC-CCCCcEEEEecCCh-hHHhhc------hhCCCcceecccccCCCC
Q 015752          287 DYLTNKKYFIVLDDVFD-D-SEIW-IDVEELLPD-DENGSRVFITVTDP-DLLASL------EMENGEKIRLDSVLFGGP  355 (401)
Q Consensus       287 ~~L~~kr~LlVlDdv~~-~-~~~~-~~l~~~l~~-~~~gs~iivTTR~~-~v~~~~------~~~~~~~~~l~~~~~~~~  355 (401)
                      +.+.+ .-+|+|||+.. . .+.+ +.+...+.. ...+..+|+||... .-...+      +......+.++      +
T Consensus       195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~------~  267 (405)
T TIGR00362       195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIE------P  267 (405)
T ss_pred             HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeC------C
Confidence            22322 34899999965 1 2112 223322221 12345677877642 221111      00111223788      8


Q ss_pred             CCCChHHHHHHHHHhhCC
Q 015752          356 LIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       356 L~~~~~ea~~Lf~~~a~~  373 (401)
                      .  +.++-..++.+++..
T Consensus       268 p--d~~~r~~il~~~~~~  283 (405)
T TIGR00362       268 P--DLETRLAILQKKAEE  283 (405)
T ss_pred             C--CHHHHHHHHHHHHHH
Confidence            8  999999999999853

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.97  E-value=0.00015  Score=75.58  Aligned_cols=169  Identities=8%  Similarity=0.003  Sum_probs=90.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+.....|..++..+ .-...+.++|+.|+||||+|+.+.+...-.+..+       ..+++.......|...-.
T Consensus        16 ~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~~   87 (576)
T PRK14965         16 SDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGRS   87 (576)
T ss_pred             HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence            78999999899999988753 2235667899999999999998876311111100       001111111111111000


Q ss_pred             CCCCCccccCc----CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChhHHhhch
Q 015752          266 PPSRVSVIIGE----DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI-TVTDPDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~----~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~~~~~  338 (401)
                      .+....+....    +..++...+... ..+++-++|+|++.. +....+.|...+-+....+.+|+ ||....+...+.
T Consensus        88 ~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~  167 (576)
T PRK14965         88 VDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL  167 (576)
T ss_pred             CCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence            00000000000    222222222211 134556889999977 56677888887776555666665 544454544331


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      . ....+++.      ++  +.++....+...+
T Consensus       168 S-Rc~~~~f~------~l--~~~~i~~~L~~i~  191 (576)
T PRK14965        168 S-RCQRFDFR------RI--PLQKIVDRLRYIA  191 (576)
T ss_pred             H-hhhhhhcC------CC--CHHHHHHHHHHHH
Confidence            0 11223677      88  8888877777665

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.96  E-value=0.00014  Score=73.58  Aligned_cols=132  Identities=11%  Similarity=0.106  Sum_probs=75.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccC--eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSIL  285 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l  285 (401)
                      ....+.|+|.+|+|||+|++.+++  .+...+.  .+++++.      ..+...+...+...         ....    +
T Consensus       147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~----~  205 (450)
T PRK00149        147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN---------TMEE----F  205 (450)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC---------cHHH----H
Confidence            345688999999999999999998  4444432  3455543      33344444444222         2222    2


Q ss_pred             HHHcCCceEEEEEeCCCC-C-ch-hHHHHHhhCCC-CCCCcEEEEecCChh-H--------HhhchhCCCcce-eccccc
Q 015752          286 RDYLTNKKYFIVLDDVFD-D-SE-IWIDVEELLPD-DENGSRVFITVTDPD-L--------LASLEMENGEKI-RLDSVL  351 (401)
Q Consensus       286 ~~~L~~kr~LlVlDdv~~-~-~~-~~~~l~~~l~~-~~~gs~iivTTR~~~-v--------~~~~~~~~~~~~-~l~~~~  351 (401)
                      .+.++ +.-+|||||+.. . .. ..+.+...+.. ...|..||+||.... -        ...+   ....+ .++   
T Consensus       206 ~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl---~~gl~v~i~---  278 (450)
T PRK00149        206 KEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF---EWGLTVDIE---  278 (450)
T ss_pred             HHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh---cCCeeEEec---
Confidence            33333 344899999965 1 11 11233332211 123456788776542 1        1222   22334 888   


Q ss_pred             CCCCCCCChHHHHHHHHHhhC
Q 015752          352 FGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       352 ~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                         ++  +.++-..++.+++.
T Consensus       279 ---~p--d~~~r~~il~~~~~  294 (450)
T PRK00149        279 ---PP--DLETRIAILKKKAE  294 (450)
T ss_pred             ---CC--CHHHHHHHHHHHHH
Confidence               99  99999999999984

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.93  E-value=3.8e-05  Score=63.45  Aligned_cols=21  Identities=19%  Similarity=0.189  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|++|+|||++|+.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            568999999999999999984

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.93  E-value=0.00027  Score=74.33  Aligned_cols=164  Identities=10%  Similarity=-0.003  Sum_probs=91.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+.....|..++..+ .-...+.++|+.|+||||+|+.++...--.+..+      ...++.   .....   .+
T Consensus        18 ~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~------~~~pC~---~C~~~---~~   84 (725)
T PRK07133         18 DDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD------LLEPCQ---ECIEN---VN   84 (725)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC------CCCchh---HHHHh---hc
Confidence            78999999899999988753 2345667899999999999998876211110000      000000   00000   00


Q ss_pred             CCCC--Cccc---cCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE-EecCChhHHhh
Q 015752          266 PPSR--VSVI---IGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVF-ITVTDPDLLAS  336 (401)
Q Consensus       266 ~~~~--~~~~---~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ii-vTTR~~~v~~~  336 (401)
                      ....  ....   ... +...+.+.+... ..+++-++|+|++.. ....+..|...+-.....+.+| +|+....+...
T Consensus        85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T  164 (725)
T PRK07133         85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT  164 (725)
T ss_pred             CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence            0000  0000   000 122333322221 235667899999976 5677888888777655555555 45555555433


Q ss_pred             chhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ... ....+++.      ++  +.++....+...+
T Consensus       165 I~S-Rcq~ieF~------~L--~~eeI~~~L~~il  190 (725)
T PRK07133        165 ILS-RVQRFNFR------RI--SEDEIVSRLEFIL  190 (725)
T ss_pred             HHh-hceeEEcc------CC--CHHHHHHHHHHHH
Confidence            311 12334888      99  9999888888765

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.93  E-value=0.00026  Score=69.07  Aligned_cols=172  Identities=12%  Similarity=0.052  Sum_probs=97.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc--ccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF--YFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      ..++|-+.....+...+..+ .....+.|+|+.|+||||+|..+.+..--..  .+...   ....++......+.+...
T Consensus        23 ~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~   98 (351)
T PRK09112         23 TRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG   98 (351)
T ss_pred             hhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence            77999999999999988753 2345688999999999999998876321100  01111   011111111122222222


Q ss_pred             cC-------CCCCCc-ccc-Cc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEe
Q 015752          264 VI-------PPSRVS-VII-GE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFIT  327 (401)
Q Consensus       264 l~-------~~~~~~-~~~-~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivT  327 (401)
                      -.       .+.... ... .. ..+++. .+.+++     .+++-++|+|++.. +....+.|...+-....++.+|++
T Consensus        99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi  177 (351)
T PRK09112         99 AHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI  177 (351)
T ss_pred             CCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence            11       000000 000 11 234333 344443     25677999999987 777777777777665445555554


Q ss_pred             c-CChhHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          328 V-TDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       328 T-R~~~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      | +...+.......+ ..+++.      |+  +.++...++.+..
T Consensus       178 t~~~~~llptIrSRc-~~i~l~------pl--~~~~~~~~L~~~~  213 (351)
T PRK09112        178 SHSSGRLLPTIRSRC-QPISLK------PL--DDDELKKALSHLG  213 (351)
T ss_pred             ECChhhccHHHHhhc-cEEEec------CC--CHHHHHHHHHHhh
Confidence            4 4434433332122 333888      99  9999999998843

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.92  E-value=4.4e-05  Score=75.83  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .++++.+...+.+...|...    +.+.++|++|+|||++|+.+++.......|..+.||++++.++..+++..+    .
T Consensus       175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----r  246 (459)
T PRK11331        175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----R  246 (459)
T ss_pred             hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----C
Confidence            66888899999999999752    467789999999999999999855555678889999999988876655422    1


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHc--CCceEEEEEeCCCC
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD  303 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~  303 (401)
                      ....   ...-........+.+..  .+++++||+|++..
T Consensus       247 P~~v---gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR  283 (459)
T PRK11331        247 PNGV---GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR  283 (459)
T ss_pred             CCCC---CeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence            1100   01001111112222222  24789999999966

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.92  E-value=0.00017  Score=72.73  Aligned_cols=135  Identities=16%  Similarity=0.191  Sum_probs=78.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCccccc-C-eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYF-D-CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      ..-+.|+|.+|+|||+|++.+++  .+.... . .++|++.      .+++..+...+...         ....    +.
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~----f~  188 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNE----FR  188 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHH----HH
Confidence            44588999999999999999998  443332 2 4566643      44566666555332         2222    23


Q ss_pred             HHcCCceEEEEEeCCCC--CchhH-HHHHhhCCC-CCCCcEEEEecC-ChhHHhhc----hhC-CCcce-ecccccCCCC
Q 015752          287 DYLTNKKYFIVLDDVFD--DSEIW-IDVEELLPD-DENGSRVFITVT-DPDLLASL----EME-NGEKI-RLDSVLFGGP  355 (401)
Q Consensus       287 ~~L~~kr~LlVlDdv~~--~~~~~-~~l~~~l~~-~~~gs~iivTTR-~~~v~~~~----~~~-~~~~~-~l~~~~~~~~  355 (401)
                      +.+..+.-+|+|||+..  +...+ +.+...+.. ...|..||+||. .+.-...+    ... ...-+ .++      +
T Consensus       189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~------~  262 (440)
T PRK14088        189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE------P  262 (440)
T ss_pred             HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeC------C
Confidence            33333456899999964  12212 223222211 123457888874 43322111    000 22234 888      8


Q ss_pred             CCCChHHHHHHHHHhhC
Q 015752          356 LIRLKHEAWQFFILHYG  372 (401)
Q Consensus       356 L~~~~~ea~~Lf~~~a~  372 (401)
                      .  +.+.-..++.+++.
T Consensus       263 p--d~e~r~~IL~~~~~  277 (440)
T PRK14088        263 P--DEETRKKIARKMLE  277 (440)
T ss_pred             C--CHHHHHHHHHHHHH
Confidence            8  99999999999885

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.91  E-value=0.00019  Score=72.51  Aligned_cols=155  Identities=11%  Similarity=0.087  Sum_probs=86.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      ..-+.|+|..|+|||+|++.+++  .+....  ..++++      +..+++..+...+...         .  .....+.
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~---------~--~~~~~~~  201 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKT---------H--KEIEQFK  201 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHh---------h--hHHHHHH
Confidence            35688999999999999999988  333222  233444      3345666666655321         0  1122333


Q ss_pred             HHcCCceEEEEEeCCCC-C-chhH-HHHHhhCCC-CCCCcEEEEecCChh---------HHhhchhCCCcce-ecccccC
Q 015752          287 DYLTNKKYFIVLDDVFD-D-SEIW-IDVEELLPD-DENGSRVFITVTDPD---------LLASLEMENGEKI-RLDSVLF  352 (401)
Q Consensus       287 ~~L~~kr~LlVlDdv~~-~-~~~~-~~l~~~l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~~-~l~~~~~  352 (401)
                      +.+. ..-+|||||+.. . ...+ +.+...+.. ...|..||+|+....         +...+   ...-+ .++    
T Consensus       202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~---~~Gl~~~L~----  273 (450)
T PRK14087        202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRF---NMGLSIAIQ----  273 (450)
T ss_pred             HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHH---hCCceeccC----
Confidence            4343 344888999965 2 1222 333333322 124557888876542         22222   22333 788    


Q ss_pred             CCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCC
Q 015752          353 GGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSY  398 (401)
Q Consensus       353 ~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~  398 (401)
                        ++  +.++-..++.+++-.........    +++..-|+ .|.|.
T Consensus       274 --~p--d~e~r~~iL~~~~~~~gl~~~l~----~evl~~Ia~~~~gd  312 (450)
T PRK14087        274 --KL--DNKTATAIIKKEIKNQNIKQEVT----EEAINFISNYYSDD  312 (450)
T ss_pred             --Cc--CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHccCCC
Confidence              99  99999999999884311110111    45555566 55554

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.90  E-value=0.00012  Score=79.39  Aligned_cols=44  Identities=14%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++||+.++.++++.|.....  .-+.++|.+|+||||||+.+++
T Consensus       187 d~~iGr~~ei~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~  230 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLAL  230 (852)
T ss_pred             CcccCCHHHHHHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHH
Confidence            7799999999999999876432  2345899999999999999987

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.89  E-value=0.0004  Score=72.71  Aligned_cols=172  Identities=9%  Similarity=-0.023  Sum_probs=93.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+.....|..++..+. -...+.++|+.|+||||+|+.++....-......     ....+..-...+.+.....
T Consensus        16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h   89 (620)
T PRK14948         16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNA   89 (620)
T ss_pred             hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCC
Confidence            778999999999988887532 2346778999999999999999773211110000     0011111122222222211


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~  338 (401)
                      ........... ..+.+.+.+...    ..+++-++|+|++.. ....++.|...+-+....+.+|++|.+ ..+...+.
T Consensus        90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr  169 (620)
T PRK14948         90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII  169 (620)
T ss_pred             ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence            11000000011 222222222211    124566889999976 567788888888765555655554443 33333331


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                       .....+.+.      ++  +.++....+.+.+.
T Consensus       170 -SRc~~~~f~------~l--~~~ei~~~L~~ia~  194 (620)
T PRK14948        170 -SRCQRFDFR------RI--PLEAMVQHLSEIAE  194 (620)
T ss_pred             -hheeEEEec------CC--CHHHHHHHHHHHHH
Confidence             011223777      88  88888877777664

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.89  E-value=8.8e-05  Score=61.19  Aligned_cols=86  Identities=12%  Similarity=-0.040  Sum_probs=47.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      ..+.|+|++|+||||+++.++.  ........++++..+........... .......     ............+....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~   74 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK-----KASGSGELRLRLALALA   74 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH-hhhhhcc-----CCCCCHHHHHHHHHHHH
Confidence            4788999999999999999988  33333234555554443322111111 0011111     01113333333444444


Q ss_pred             CCc-eEEEEEeCCCC
Q 015752          290 TNK-KYFIVLDDVFD  303 (401)
Q Consensus       290 ~~k-r~LlVlDdv~~  303 (401)
                      +.. ..+|++|++..
T Consensus        75 ~~~~~~viiiDei~~   89 (148)
T smart00382       75 RKLKPDVLILDEITS   89 (148)
T ss_pred             HhcCCCEEEEECCcc
Confidence            443 49999999988

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08116 hypothetical protein; Validated

Probab=97.88  E-value=9.2e-05  Score=69.62  Aligned_cols=103  Identities=21%  Similarity=0.222  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      ..+.++|.+|+|||.||..+++  .+......+++++      ..+++..+.........      .+...    +.+.+
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~~~----~~~~l  176 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK------EDENE----IIRSL  176 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcccc------ccHHH----HHHHh
Confidence            3578999999999999999998  4433333456654      34455555544432210      02222    23334


Q ss_pred             CCceEEEEEeCCCC-CchhHHH--HHhhCCC-CCCCcEEEEecCCh
Q 015752          290 TNKKYFIVLDDVFD-DSEIWID--VEELLPD-DENGSRVFITVTDP  331 (401)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~-~~~gs~iivTTR~~  331 (401)
                      .+-. ||||||+.. ...+|..  |...+.. -.++..+||||...
T Consensus       177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            4333 899999943 2444533  3333221 12456789998754

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.83  E-value=0.00016  Score=77.63  Aligned_cols=156  Identities=12%  Similarity=0.079  Sum_probs=85.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc---Cccccc-CeEEEEEcCCCCCHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN---HVKFYF-DCHAWVRVSLDYDFRRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~~~i~  261 (401)
                      ..++||+.+++++++.|....  ..-+.++|++|+|||++|+.+++..   .+...+ +..+|. +    +...+    +
T Consensus       182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~  250 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----L  250 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----h
Confidence            679999999999999887643  2234689999999999999998732   111112 334442 1    11111    1


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-C---------chhHHHHHhhCCCCCCCcEEEEecCC
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-D---------SEIWIDVEELLPDDENGSRVFITVTD  330 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~---------~~~~~~l~~~l~~~~~gs~iivTTR~  330 (401)
                      ....        ...+.+.....+.+.+ ..++.+|++|++.. .         .+.-+-|...+.. + .-++|-+|..
T Consensus       251 a~~~--------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~  320 (731)
T TIGR02639       251 AGTK--------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTY  320 (731)
T ss_pred             hhcc--------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCH
Confidence            1000        0002333333333333 34678999999864 1         1112334444432 1 2344444443


Q ss_pred             hhHH------hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          331 PDLL------ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       331 ~~v~------~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ++..      ... ......+.++      ++  +.++..+++....
T Consensus       321 ~e~~~~~~~d~al-~rRf~~i~v~------~p--~~~~~~~il~~~~  358 (731)
T TIGR02639       321 EEYKNHFEKDRAL-SRRFQKIDVG------EP--SIEETVKILKGLK  358 (731)
T ss_pred             HHHHHHhhhhHHH-HHhCceEEeC------CC--CHHHHHHHHHHHH
Confidence            2211      111 0123445889      99  9999999999655

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.82  E-value=0.00037  Score=72.00  Aligned_cols=130  Identities=12%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      ..+.|+|..|+|||.|++.+++  .....+  ..+++++      ..+++.++...+...         ..    ..+.+
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~----~~f~~  373 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KG----DSFRR  373 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cH----HHHHH
Confidence            4588999999999999999998  443322  2345553      344444554443222         11    12333


Q ss_pred             HcCCceEEEEEeCCCC--CchhHHH-HHhhCCC-CCCCcEEEEecCCh---------hHHhhchhCCCcce-ecccccCC
Q 015752          288 YLTNKKYFIVLDDVFD--DSEIWID-VEELLPD-DENGSRVFITVTDP---------DLLASLEMENGEKI-RLDSVLFG  353 (401)
Q Consensus       288 ~L~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~-~l~~~~~~  353 (401)
                      .+.. -=+|||||+..  ..+.|.. |...|.. ...|..|||||+..         .+...+   ...-+ .|+     
T Consensus       374 ~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf---~~GLvv~I~-----  444 (617)
T PRK14086        374 RYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF---EWGLITDVQ-----  444 (617)
T ss_pred             Hhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh---hcCceEEcC-----
Confidence            3333 35788999966  2233332 2222221 12356788888763         122222   23334 888     


Q ss_pred             CCCCCChHHHHHHHHHhhC
Q 015752          354 GPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       354 ~~L~~~~~ea~~Lf~~~a~  372 (401)
                       +.  +.+.-..++.+++.
T Consensus       445 -~P--D~EtR~aIL~kka~  460 (617)
T PRK14086        445 -PP--ELETRIAILRKKAV  460 (617)
T ss_pred             -CC--CHHHHHHHHHHHHH
Confidence             88  99999999999884

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.82  E-value=0.00023  Score=72.38  Aligned_cols=163  Identities=13%  Similarity=0.078  Sum_probs=89.6

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccc-----cCeEEEEEcCC
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY-----FDCHAWVRVSL  249 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~  249 (401)
                      .++.|.+..++++.+.+..           +-...+-+.++|++|+|||++|+.+++.  ....     +....|+++..
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~  259 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG  259 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence            7788899999888887642           1123456889999999999999999983  3322     12344444433


Q ss_pred             CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC---C-----chh-----HHHHHhhC
Q 015752          250 DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD---D-----SEI-----WIDVEELL  315 (401)
Q Consensus       250 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~---~-----~~~-----~~~l~~~l  315 (401)
                      .        +++....+.      .......+....++.. .+++++|+||+++.   .     ..+     ...+...+
T Consensus       260 ~--------eLl~kyvGe------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L  325 (512)
T TIGR03689       260 P--------ELLNKYVGE------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL  325 (512)
T ss_pred             h--------hhcccccch------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence            1        111111110      0001122222222222 35789999999964   0     011     23444444


Q ss_pred             CCC--CCCcEEEEecCChhHHhhc--hhCCCcc-eecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          316 PDD--ENGSRVFITVTDPDLLASL--EMENGEK-IRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       316 ~~~--~~gs~iivTTR~~~v~~~~--~~~~~~~-~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ..-  ..+..||.||...+.....  +-+..+. +.++      +.  +.++..++|..+..
T Consensus       326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~------~P--d~e~r~~Il~~~l~  379 (512)
T TIGR03689       326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIE------RP--DAEAAADIFSKYLT  379 (512)
T ss_pred             cccccCCceEEEeccCChhhCCHhhcCccccceEEEeC------CC--CHHHHHHHHHHHhh
Confidence            321  1344455666555432211  0012233 3788      88  99999999998874

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK06620 hypothetical protein; Validated

Probab=97.82  E-value=0.0002  Score=65.08  Aligned_cols=128  Identities=12%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      ..+.|+|++|+|||+|++.+++...  .     .++.  ....              .         .         +.+
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------~---------~---------~~~   83 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------N---------E---------EIL   83 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------c---------h---------hHH
Confidence            5688999999999999999877321  1     1111  0000              0         0         011


Q ss_pred             CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-------HhhchhCCCcce-ecccccCCCCCCCCh
Q 015752          290 TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-------LASLEMENGEKI-RLDSVLFGGPLIRLK  360 (401)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-------~~~~~~~~~~~~-~l~~~~~~~~L~~~~  360 (401)
                       ...-+|++||+.. .....-.+...+.  ..|..||+|++.+..       .+.+   ...-+ +++      ++  +.
T Consensus        84 -~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl---~~gl~~~l~------~p--d~  149 (214)
T PRK06620         84 -EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRI---KSVLSILLN------SP--DD  149 (214)
T ss_pred             -hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHH---hCCceEeeC------CC--CH
Confidence             1235788999965 1222222322222  346789999885432       2222   23334 889      99  99


Q ss_pred             HHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCC
Q 015752          361 HEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSY  398 (401)
Q Consensus       361 ~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~  398 (401)
                      ++-..++.+.+......  ..    +++..-|+ .|.+.
T Consensus       150 ~~~~~~l~k~~~~~~l~--l~----~ev~~~L~~~~~~d  182 (214)
T PRK06620        150 ELIKILIFKHFSISSVT--IS----RQIIDFLLVNLPRE  182 (214)
T ss_pred             HHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHccCC
Confidence            99888888887421111  11    45555666 55543

>PRK08181 transposase; Validated

Probab=97.79  E-value=6e-05  Score=70.72  Aligned_cols=100  Identities=15%  Similarity=0.091  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      .-+.++|++|+|||.||..+.+  ........+.|++      ..+++..+.......         +.......    +
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~~~---------~~~~~l~~----l  165 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARREL---------QLESAIAK----L  165 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHhCC---------cHHHHHHH----H
Confidence            3478999999999999999987  3333333455554      345555554332111         22222222    2


Q ss_pred             CCceEEEEEeCCCC-CchhH--HHHHhhCCCCCCCcEEEEecCCh
Q 015752          290 TNKKYFIVLDDVFD-DSEIW--IDVEELLPDDENGSRVFITVTDP  331 (401)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~~~~gs~iivTTR~~  331 (401)
                       .+--||||||+.. ....|  ..+...+...-.+..+||||...
T Consensus       166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~  209 (269)
T PRK08181        166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP  209 (269)
T ss_pred             -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence             2345999999965 22222  23333332211123588888765

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.78  E-value=0.00081  Score=69.80  Aligned_cols=170  Identities=9%  Similarity=-0.021  Sum_probs=92.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+.....|.+++..+. -...+.++|+.|+||||+|+.+.....-.+.-       -..+++.-.....|.....
T Consensus        16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~~g~~   87 (559)
T PRK05563         16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAITNGSL   87 (559)
T ss_pred             HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHhcCCC
Confidence            789999999999999987642 34567789999999999999886521111000       0011111111222211111


Q ss_pred             CCCCCccccCc-CHH---HHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChhHHhhch
Q 015752          266 PPSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV-TDPDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~---~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~~~~  338 (401)
                      .+..+.+.... ..+   ++...+... ..++.-++|+|++.. ....+..|...+......+.+|++| ....+...+.
T Consensus        88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~  167 (559)
T PRK05563         88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL  167 (559)
T ss_pred             CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence            10000000001 222   222222211 135667889999976 5677888888776655555555544 4433333221


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                       .....+...      ++  +.++....+...+.
T Consensus       168 -SRc~~~~f~------~~--~~~ei~~~L~~i~~  192 (559)
T PRK05563        168 -SRCQRFDFK------RI--SVEDIVERLKYILD  192 (559)
T ss_pred             -hHheEEecC------CC--CHHHHHHHHHHHHH
Confidence             011223667      88  99888888887763

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.78  E-value=0.00084  Score=69.55  Aligned_cols=169  Identities=9%  Similarity=-0.058  Sum_probs=92.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|-+..++.|..++..+ .-...+.++|+.|+||||+|+.+.+...-......       .++..-...+.|...-.
T Consensus        16 ~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~~~   87 (563)
T PRK06647         16 NSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDNDNS   87 (563)
T ss_pred             HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcCCC
Confidence            78999999999999988753 23456789999999999999998773211110000       00000000011111000


Q ss_pred             CCCCCccccCc-CHHHHHHHH---HHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSIL---RDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l---~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~  338 (401)
                      .+-........ ..+++....   ... ..+++-++|+|++.. ....++.|...+......+.+|.+|.. ..+...+.
T Consensus        88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~  167 (563)
T PRK06647         88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK  167 (563)
T ss_pred             CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence            00000000000 222222221   111 235666899999977 567788888888766666666665543 34433321


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                       .....++..      ++  +.++-...+.+.+
T Consensus       168 -SRc~~~~f~------~l--~~~el~~~L~~i~  191 (563)
T PRK06647        168 -SRCQHFNFR------LL--SLEKIYNMLKKVC  191 (563)
T ss_pred             -HhceEEEec------CC--CHHHHHHHHHHHH
Confidence             011223777      88  8888888887776

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.76  E-value=0.00053  Score=68.06  Aligned_cols=155  Identities=15%  Similarity=0.163  Sum_probs=86.4

Q ss_pred             CccccccccHHHHHHHHhc---C--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE---G--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.+..+++|.+.+..   .        -...+-+.++|++|+|||+||+.+++  .....|   +.+..      .
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f---i~i~~------s  213 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF---IRVVG------S  213 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE---EEEeh------H
Confidence            7889999888888776631   1        12356788999999999999999998  333333   11211      1


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-----------ch---hHHHHHhhCCC--
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-----------SE---IWIDVEELLPD--  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-----------~~---~~~~l~~~l~~--  317 (401)
                      .+    .....+.         ....+...+.......+.+|+||++.. -           ..   .+..+...+..  
T Consensus       214 ~l----~~k~~ge---------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~  280 (398)
T PTZ00454        214 EF----VQKYLGE---------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD  280 (398)
T ss_pred             HH----HHHhcch---------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence            11    1111111         222222333333346789999999753 0           00   12233333321  


Q ss_pred             CCCCcEEEEecCChhHHhh--chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          318 DENGSRVFITVTDPDLLAS--LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       318 ~~~gs~iivTTR~~~v~~~--~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ...+..||+||...+....  .+.+..+.. .++      +.  +.++...+|.....
T Consensus       281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~------~P--~~~~R~~Il~~~~~  330 (398)
T PTZ00454        281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP------LP--DRRQKRLIFQTITS  330 (398)
T ss_pred             CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC------Cc--CHHHHHHHHHHHHh
Confidence            1235678888876653321  111122333 666      66  88888888887654

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.75  E-value=0.00032  Score=70.71  Aligned_cols=134  Identities=12%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      ..-+.|+|+.|+|||+|++.+++  .+......+++++      ...+...+...+...         ..    ..+++.
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~~----~~f~~~  199 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------EM----QRFRQF  199 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------hH----HHHHHH
Confidence            35678999999999999999998  3332223345553      234444555544322         11    223343


Q ss_pred             cCCceEEEEEeCCCC-CchhH--HHHHhhCCC-CCCCcEEEEecCCh-hH----HhhchhC-CCcce-ecccccCCCCCC
Q 015752          289 LTNKKYFIVLDDVFD-DSEIW--IDVEELLPD-DENGSRVFITVTDP-DL----LASLEME-NGEKI-RLDSVLFGGPLI  357 (401)
Q Consensus       289 L~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~-~~~gs~iivTTR~~-~v----~~~~~~~-~~~~~-~l~~~~~~~~L~  357 (401)
                      +. ..-+|++||+.. ....|  +.+...+.. ...|..||+||... .-    ...+..+ ....+ .++      ++ 
T Consensus       200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~------~p-  271 (445)
T PRK12422        200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLH------PL-  271 (445)
T ss_pred             cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC------CC-
Confidence            43 345888999855 22111  223322211 11355788888652 21    1111101 22334 888      99 


Q ss_pred             CChHHHHHHHHHhhC
Q 015752          358 RLKHEAWQFFILHYG  372 (401)
Q Consensus       358 ~~~~ea~~Lf~~~a~  372 (401)
                       +.++-..++.+++.
T Consensus       272 -d~e~r~~iL~~k~~  285 (445)
T PRK12422        272 -TKEGLRSFLERKAE  285 (445)
T ss_pred             -CHHHHHHHHHHHHH
Confidence             99999999998874

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.70  E-value=0.00062  Score=73.20  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=38.5

Q ss_pred             CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.+|.++.+++|+++|..    +.....++.++|++|+||||+|+.++.
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~  371 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK  371 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            6689999999999998863    122345788999999999999999987

>CHL00176 ftsH cell division protein; Validated

Probab=97.69  E-value=0.00084  Score=70.48  Aligned_cols=156  Identities=12%  Similarity=0.163  Sum_probs=86.3

Q ss_pred             CccccccccHHHHHHHH---hcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLL---IEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .++.|.++..+++.+.+   ...       ....+-+.++|++|.|||+||+.+++.  ...     -|+.++..    .
T Consensus       183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~s----~  251 (638)
T CHL00176        183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISGS----E  251 (638)
T ss_pred             HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccHH----H
Confidence            78889877666655543   321       122456889999999999999999873  221     22333211    1


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C----------chh----HHHHHhhCCC--C
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D----------SEI----WIDVEELLPD--D  318 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~----------~~~----~~~l~~~l~~--~  318 (401)
                      +.    ......         ....+...+.......+++|+||++.. .          ...    +..+...+..  .
T Consensus       252 f~----~~~~g~---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~  318 (638)
T CHL00176        252 FV----EMFVGV---------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG  318 (638)
T ss_pred             HH----HHhhhh---------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence            11    111010         222334444455567889999999953 0          111    2333333321  2


Q ss_pred             CCCcEEEEecCChhHHhh-c-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          319 ENGSRVFITVTDPDLLAS-L-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       319 ~~gs~iivTTR~~~v~~~-~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      ..+-.||.||...+.... + +-+..+.. .++      +.  +.++-.+++..++..
T Consensus       319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~------lP--d~~~R~~IL~~~l~~  368 (638)
T CHL00176        319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVS------LP--DREGRLDILKVHARN  368 (638)
T ss_pred             CCCeeEEEecCchHhhhhhhhccccCceEEEEC------CC--CHHHHHHHHHHHHhh
Confidence            235566777766543322 1 10122344 777      77  888888898888753

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.66  E-value=0.00031  Score=76.65  Aligned_cols=44  Identities=11%  Similarity=0.100  Sum_probs=36.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++||+.++.+++..|.....  .-+.++|++|+|||+||+.+..
T Consensus       173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~  216 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ  216 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence            6799999999999999976432  3344789999999999999887

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.65  E-value=0.00028  Score=76.66  Aligned_cols=45  Identities=18%  Similarity=0.168  Sum_probs=37.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..++||+++++++++.|.....  .-+.++|++|+|||++|+.++..
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~~  223 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQR  223 (821)
T ss_pred             CCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999976432  23458999999999999998773

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.63  E-value=0.00054  Score=73.61  Aligned_cols=118  Identities=12%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|-+..++.+.+.+...       .....++.++|++|+|||+||+.++.  ..   +...+.+..+.-....    
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~----  524 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKH----  524 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcc----
Confidence            45778788888887777631       12345688999999999999999987  33   2234455544321111    


Q ss_pred             HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC
Q 015752          259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD  318 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~  318 (401)
                      .+...++....   -... ....+...++.   ...-+|+||+++. .++.++.|...+..+
T Consensus       525 ~~~~lig~~~g---yvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~g  580 (731)
T TIGR02639       525 TVSRLIGAPPG---YVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDYA  580 (731)
T ss_pred             cHHHHhcCCCC---CcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence            11111222211   0111 22233333321   3346999999987 677788887776643

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.61  E-value=0.00057  Score=71.38  Aligned_cols=46  Identities=13%  Similarity=0.113  Sum_probs=39.0

Q ss_pred             CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|-+..++++..||...   .....++.|+|++|+||||+++.++.
T Consensus        84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~  132 (637)
T TIGR00602        84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK  132 (637)
T ss_pred             HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998753   22345799999999999999999987

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.61  E-value=0.00051  Score=74.81  Aligned_cols=44  Identities=11%  Similarity=0.099  Sum_probs=37.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++||+.++.++++.|.....  .-+.++|.+|+|||+||+.+..
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~  221 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQ  221 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999976432  3345889999999999999887

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00062  Score=70.15  Aligned_cols=102  Identities=19%  Similarity=0.171  Sum_probs=65.7

Q ss_pred             CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~  261 (401)
                      .+-+|.++.+++|++.+.-    ++.+-+++..+|++|+|||.+|+.|+.  .....|   +-++++.-.++.+|--.=-
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHRR  485 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHRR  485 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccce
Confidence            6779999999999999853    455668999999999999999999987  555554   3345665555544311100


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~  303 (401)
                      ..+          ..-...+++-|++. +...-|+.||.|..
T Consensus       486 TYV----------GAMPGkiIq~LK~v-~t~NPliLiDEvDK  516 (906)
T KOG2004|consen  486 TYV----------GAMPGKIIQCLKKV-KTENPLILIDEVDK  516 (906)
T ss_pred             eee----------ccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence            000          10122333333332 34677889999854

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.60  E-value=0.0003  Score=64.58  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=29.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV  247 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v  247 (401)
                      -.++|+|..|+|||||...+..  ...+.|..+++++-
T Consensus        14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~   49 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP   49 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence            3567899999999999999987  67778987777754

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK06526 transposase; Provisional

Probab=97.58  E-value=0.00012  Score=68.10  Aligned_cols=99  Identities=14%  Similarity=0.061  Sum_probs=51.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      .-+.|+|++|+|||+||..+.+... +..+ .+.|+      +..+++..+.......         .   +...+.++ 
T Consensus        99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~~~---------~---~~~~l~~l-  157 (254)
T PRK06526         99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHHAG---------R---LQAELVKL-  157 (254)
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHhcC---------c---HHHHHHHh-
Confidence            3578999999999999999976321 1222 23332      3334444443321111         1   11223322 


Q ss_pred             CCceEEEEEeCCCC-Cc-hhHH-HHHhhCCC-CCCCcEEEEecCCh
Q 015752          290 TNKKYFIVLDDVFD-DS-EIWI-DVEELLPD-DENGSRVFITVTDP  331 (401)
Q Consensus       290 ~~kr~LlVlDdv~~-~~-~~~~-~l~~~l~~-~~~gs~iivTTR~~  331 (401)
                       .+.-||||||+.. .. ..+. .+...+.. ...++ +|+||..+
T Consensus       158 -~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~  201 (254)
T PRK06526        158 -GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP  201 (254)
T ss_pred             -ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence             2346899999965 11 2222 23333321 12344 88888865

>PRK08118 topology modulation protein; Reviewed

Probab=97.58  E-value=3.2e-05  Score=67.40  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcc-cccCeEEE
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVK-FYFDCHAW  244 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w  244 (401)
                      -|.|+|++|+||||||+.+++...+. -+|+..+|
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            57899999999999999999854444 45677776

>COG3899 Predicted ATPase [General function prediction only]

Probab=97.58  E-value=0.0013  Score=71.44  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             ccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          187 DISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++||+.+.+.|...+.. ......++.+.|..|||||+|++.|..
T Consensus         1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~   46 (849)
T COG3899           1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK   46 (849)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence            478999999999998865 234556999999999999999999987

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.57  E-value=0.002  Score=60.40  Aligned_cols=154  Identities=12%  Similarity=0.094  Sum_probs=77.7

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHH------------H
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII------------K  262 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~------------~  262 (401)
                      ++++..++..   + .-+.+.|++|+|||+||+.+.+  ....   ..+.++.....+..+++....            .
T Consensus        11 ~~~~l~~l~~---g-~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~   81 (262)
T TIGR02640        11 TSRALRYLKS---G-YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIH   81 (262)
T ss_pred             HHHHHHHHhc---C-CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHH
Confidence            4455555543   2 3456899999999999999986  2222   234455555555444432211            0


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC----------------CCCcEEE
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD----------------ENGSRVF  325 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~----------------~~gs~ii  325 (401)
                      .......   .....+.  ...+.... .+...|++|++.. +++.+..|...+..+                .++.+||
T Consensus        82 ~~~~~~~---~~~~~~~--~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvI  155 (262)
T TIGR02640        82 NVVKLED---IVRQNWV--DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVI  155 (262)
T ss_pred             Hhhhhhc---ccceeec--CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEE
Confidence            0000000   0000000  00011111 1346899999977 566666666655331                1256788


Q ss_pred             EecCChhHH------hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          326 ITVTDPDLL------ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       326 vTTR~~~v~------~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +|+....-.      .... .....+.++      ..  +.++-.+++..+++
T Consensus       156 aTsN~~~~~g~~~l~~aL~-~R~~~i~i~------~P--~~~~e~~Il~~~~~  199 (262)
T TIGR02640       156 FTSNPVEYAGVHETQDALL-DRLITIFMD------YP--DIDTETAILRAKTD  199 (262)
T ss_pred             EeeCCccccceecccHHHH-hhcEEEECC------CC--CHHHHHHHHHHhhC
Confidence            888754211      1110 012223566      55  77777778777653

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.56  E-value=0.0016  Score=64.29  Aligned_cols=194  Identities=10%  Similarity=0.018  Sum_probs=111.9

Q ss_pred             CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      ..++||+.++..+.+++...  .+....+=|.|-+|.|||.+...++.+..-...=.++++++...--....++..|...
T Consensus       150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~  229 (529)
T KOG2227|consen  150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS  229 (529)
T ss_pred             CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence            77999999999999999752  3445567788999999999999998853222111244666554434556677777766


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCC--ceEEEEEeCCCC-CchhHHHHHhhCCCC-CCCcEEEEe---------cCC
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTN--KKYFIVLDDVFD-DSEIWIDVEELLPDD-ENGSRVFIT---------VTD  330 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs~iivT---------TR~  330 (401)
                      +-....    ......+....+.+...+  ..+|+|+|.+.. ....-..|...|-+. -+++++|+.         -|.
T Consensus       230 ~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~  305 (529)
T KOG2227|consen  230 LLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF  305 (529)
T ss_pred             HHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence            622110    011335556666666654  368999999865 211112222222221 234554432         121


Q ss_pred             hhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh
Q 015752          331 PDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV  393 (401)
Q Consensus       331 ~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~  393 (401)
                      -.-... .......+ ...      |.  +.++-.++|.++.-..+.. ...+..++-.|++.+
T Consensus       306 LprL~~-~~~~~P~~l~F~------PY--Tk~qI~~Il~~rl~~~~t~-~~~~~Aie~~ArKva  359 (529)
T KOG2227|consen  306 LPRLNL-DLTIKPKLLVFP------PY--TKDQIVEILQQRLSEESTS-IFLNAAIELCARKVA  359 (529)
T ss_pred             hhhhhh-ccCCCCceeeec------CC--CHHHHHHHHHHHHhccccc-ccchHHHHHHHHHhc
Confidence            111111 00122333 666      88  9999999999998543221 122456666666666

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.55  E-value=0.0026  Score=65.31  Aligned_cols=156  Identities=14%  Similarity=0.178  Sum_probs=83.3

Q ss_pred             CccccccccHHHHHHHHh---c-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLLI---E-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.+..++++.+.+.   .       +....+-+.++|++|+|||+||+.+++.  ....     ++.++.    ..
T Consensus        55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~  123 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD  123 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence            888998877766655443   1       1223345789999999999999999873  2222     222221    11


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C----------chhHH----HHHhhCCC--C
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D----------SEIWI----DVEELLPD--D  318 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~----------~~~~~----~l~~~l~~--~  318 (401)
                      +    .....+.         ....+...+.......+.+|+||++.. .          ...+.    .+...+..  .
T Consensus       124 ~----~~~~~g~---------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~  190 (495)
T TIGR01241       124 F----VEMFVGV---------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT  190 (495)
T ss_pred             H----HHHHhcc---------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence            1    1111111         223333444444445778999999844 0          01122    22222221  1


Q ss_pred             CCCcEEEEecCChhHHh-hc-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          319 ENGSRVFITVTDPDLLA-SL-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       319 ~~gs~iivTTR~~~v~~-~~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      ..+-.||.||....... .+ +-+..+.. .++      ..  +.++-.++|...+..
T Consensus       191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~------~P--d~~~R~~il~~~l~~  240 (495)
T TIGR01241       191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD------LP--DIKGREEILKVHAKN  240 (495)
T ss_pred             CCCeEEEEecCChhhcCHHHhcCCcceEEEEcC------CC--CHHHHHHHHHHHHhc
Confidence            23445666676554221 11 00123334 777      66  888888888887643

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK12377 putative replication protein; Provisional

Probab=97.55  E-value=0.00035  Score=64.79  Aligned_cols=101  Identities=14%  Similarity=0.009  Sum_probs=56.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      ...+.++|.+|+|||+||..+++  ........++++++.      +++..+-.......        ....    +.+.
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~~--------~~~~----~l~~  160 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNGQ--------SGEK----FLQE  160 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhccc--------hHHH----HHHH
Confidence            35788999999999999999998  444444445666543      44444443332110        1111    2222


Q ss_pred             cCCceEEEEEeCCCC-CchhHH--HHHhhCCCC-CCCcEEEEecCC
Q 015752          289 LTNKKYFIVLDDVFD-DSEIWI--DVEELLPDD-ENGSRVFITVTD  330 (401)
Q Consensus       289 L~~kr~LlVlDdv~~-~~~~~~--~l~~~l~~~-~~gs~iivTTR~  330 (401)
                      + .+--||||||+.. ....|.  .|...+... .+..-+||||..
T Consensus       161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl  205 (248)
T PRK12377        161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL  205 (248)
T ss_pred             h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            2 4567999999944 123343  333333321 223347777774

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.55  E-value=0.00064  Score=62.16  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=70.0

Q ss_pred             CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .+++|.+..++.|++-...  .+....-+.+||..|.|||+|++.+.+  +....-  .--|.+.+.             
T Consensus        27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~--~y~~~G--LRlIev~k~-------------   89 (249)
T PF05673_consen   27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN--EYADQG--LRLIEVSKE-------------   89 (249)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH--HHhhcC--ceEEEECHH-------------
Confidence            8899999998888664432  223345567899999999999999987  222211  111222211             


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC---CCCcEEE-EecCChhH
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD---ENGSRVF-ITVTDPDL  333 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~---~~gs~ii-vTTR~~~v  333 (401)
                               ++. +...+.+.++.  ...||+|.+||+.=  +...+..|+..|..+   .+...+| .||...+.
T Consensus        90 ---------~L~-~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL  153 (249)
T PF05673_consen   90 ---------DLG-DLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL  153 (249)
T ss_pred             ---------Hhc-cHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence                     000 33333333332  35799999999843  355677777776543   2333444 45544444

>TIGR00763 lon ATP-dependent protease La

Probab=97.54  E-value=0.0025  Score=68.88  Aligned_cols=46  Identities=15%  Similarity=0.276  Sum_probs=37.1

Q ss_pred             CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.++.++.+.+++..    +..+..++.++|++|+|||++|+.+.+
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~  369 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK  369 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            5688999999998887642    222345788999999999999999998

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.53  E-value=0.0023  Score=68.86  Aligned_cols=156  Identities=17%  Similarity=0.192  Sum_probs=86.2

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.+..++.|.+.+.-           +-...+-+.++|++|+|||+||+.+++  .....|     +.+..    .
T Consensus       453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~~----~  521 (733)
T TIGR01243       453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVRG----P  521 (733)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEeh----H
Confidence            6778888888777776542           112344578899999999999999998  333333     22221    1


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C--------c----hhHHHHHhhCCC--CC
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D--------S----EIWIDVEELLPD--DE  319 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------~----~~~~~l~~~l~~--~~  319 (401)
                          +++....+.         +...+...+...-+..+.+|+||++.. -        .    .....+...+..  ..
T Consensus       522 ----~l~~~~vGe---------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~  588 (733)
T TIGR01243       522 ----EILSKWVGE---------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL  588 (733)
T ss_pred             ----HHhhcccCc---------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence                122211111         223333333333345789999999853 0        0    112334444432  12


Q ss_pred             CCcEEEEecCChhHHhhchh--CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          320 NGSRVFITVTDPDLLASLEM--ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       320 ~gs~iivTTR~~~v~~~~~~--~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      .+--||.||..++.....-.  +..+.. .++      +.  +.++-.++|......
T Consensus       589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~------~P--d~~~R~~i~~~~~~~  637 (733)
T TIGR01243       589 SNVVVIAATNRPDILDPALLRPGRFDRLILVP------PP--DEEARKEIFKIHTRS  637 (733)
T ss_pred             CCEEEEEeCCChhhCCHhhcCCCccceEEEeC------Cc--CHHHHHHHHHHHhcC
Confidence            34456667766654322201  123444 677      66  888888888776643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.53  E-value=0.00032  Score=67.14  Aligned_cols=119  Identities=12%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             cccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752          190 HFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPP  267 (401)
Q Consensus       190 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~  267 (401)
                      ++........+++..-  .....-+.|+|..|+|||.||..+++.  ....-..+.++++      ..++.++-......
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~~~  206 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSISDG  206 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHhcC
Confidence            3444444555555431  113456889999999999999999984  3333233455544      34555555544221


Q ss_pred             CCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHH--HHhhC-CCC-CCCcEEEEecCC
Q 015752          268 SRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWID--VEELL-PDD-ENGSRVFITVTD  330 (401)
Q Consensus       268 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~--l~~~l-~~~-~~gs~iivTTR~  330 (401)
                               +...   .+.. + .+-=||||||+-. ....|..  +...+ ... ..+..+|+||.-
T Consensus       207 ---------~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl  260 (306)
T PRK08939        207 ---------SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF  260 (306)
T ss_pred             ---------cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence                     2222   2222 2 3566899999965 3456643  44433 221 245568888874

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.52  E-value=0.00044  Score=67.29  Aligned_cols=106  Identities=12%  Similarity=-0.012  Sum_probs=64.2

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc-Ce-EEEEEcCCC-CCHHHHHHHHHHHcCCCCCC
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF-DC-HAWVRVSLD-YDFRRILDDIIKSVIPPSRV  270 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~  270 (401)
                      ...++++.+..-..+. -+.|+|.+|+|||||++.+++  .+.... +. ++|+.+.+. ..+.+++..+...+......
T Consensus       119 ~~~RvID~l~PiGkGQ-R~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d  195 (380)
T PRK12608        119 LSMRVVDLVAPIGKGQ-RGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD  195 (380)
T ss_pred             hhHhhhhheeecCCCc-eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence            3445777776533333 457999999999999999887  333222 33 477777775 46778888887766543211


Q ss_pred             ccccCc-CHHHHHHHHHHHc--CCceEEEEEeCCC
Q 015752          271 SVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVF  302 (401)
Q Consensus       271 ~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDdv~  302 (401)
                      ...... ........+.+++  +|++++||+|++.
T Consensus       196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt  230 (380)
T PRK12608        196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT  230 (380)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence            100010 1111222233333  5899999999984

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.52  E-value=0.00019  Score=78.00  Aligned_cols=133  Identities=11%  Similarity=0.081  Sum_probs=76.7

Q ss_pred             CccccccccHHHHHHHHhc-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|-+..++.+.+.+..       ......++.++|++|+|||.||+.+..  .+-+.....+-++.+.-.. .   .
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~-~---~  639 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMSEFQE-A---H  639 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhh-h---h
Confidence            6789999999999888853       123455789999999999999988876  2211112222222222110 0   0


Q ss_pred             HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEE
Q 015752          259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVF  325 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~ii  325 (401)
                      .+..-++.+.+.   ... ....+...+++   ....+|+||++.. +++.++.|...+.++.           ..+-||
T Consensus       640 ~~~~l~g~~~gy---vg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI  713 (852)
T TIGR03345       640 TVSRLKGSPPGY---VGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL  713 (852)
T ss_pred             hhccccCCCCCc---ccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence            111111221110   111 22233333333   4567999999977 6777888877776542           456677


Q ss_pred             EecCC
Q 015752          326 ITVTD  330 (401)
Q Consensus       326 vTTR~  330 (401)
                      +||..
T Consensus       714 ~TSNl  718 (852)
T TIGR03345       714 LTSNA  718 (852)
T ss_pred             EeCCC
Confidence            78764

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.51  E-value=0.0011  Score=72.29  Aligned_cols=133  Identities=15%  Similarity=0.148  Sum_probs=74.2

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|-+..++.+...+...       +....++.++|++|+|||+||+.+++  .....-...+.+..+.-.. .....
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~-~~~~~  644 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFME-KHSVS  644 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhh-hhhHH
Confidence            56889999988888887531       22235788999999999999999986  2211112234444432111 11111


Q ss_pred             HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEE
Q 015752          259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVF  325 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~ii  325 (401)
                      .   -++.+..   -... ....+...++   ....-+|+||++.. ++..+..|...+.++.           ..+-||
T Consensus       645 ~---LiG~~pg---y~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI  715 (857)
T PRK10865        645 R---LVGAPPG---YVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI  715 (857)
T ss_pred             H---HhCCCCc---ccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence            1   1222211   0011 1122222222   12335999999986 6778888877765431           223377


Q ss_pred             EecCC
Q 015752          326 ITVTD  330 (401)
Q Consensus       326 vTTR~  330 (401)
                      +||..
T Consensus       716 ~TSN~  720 (857)
T PRK10865        716 MTSNL  720 (857)
T ss_pred             EeCCc
Confidence            78875

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=97.48  E-value=0.0012  Score=61.75  Aligned_cols=183  Identities=14%  Similarity=0.094  Sum_probs=108.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEE-EEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAW-VRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~~l  264 (401)
                      .+++|-+..+.-|.+.+..  ........+|++|.|||+-|..+....--.+-|.+++- .++|..-... +        
T Consensus        36 de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-v--------  104 (346)
T KOG0989|consen   36 DELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-V--------  104 (346)
T ss_pred             HhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-c--------
Confidence            7788988888888888876  45678889999999999988777653222455655432 2333321111 0        


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHc--CCce-EEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhchh
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDYL--TNKK-YFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLEM  339 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~  339 (401)
                      ...     ... +...+........  .-++ =.||||++.. ..+.|..|+..+.+-...++.|+.+.. ..+..-+  
T Consensus       105 vr~-----Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi--  176 (346)
T KOG0989|consen  105 VRE-----KIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL--  176 (346)
T ss_pred             hhh-----hhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH--
Confidence            000     000 2222222111111  0134 3678999977 788999999888776666776554443 2221111  


Q ss_pred             CCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                          .-+-..|+|+ +|  .+++...-+...+-.   ++....   ...-+.|+ .|+|.|.
T Consensus       177 ----~SRC~KfrFk-~L--~d~~iv~rL~~Ia~~---E~v~~d---~~al~~I~~~S~GdLR  225 (346)
T KOG0989|consen  177 ----VSRCQKFRFK-KL--KDEDIVDRLEKIASK---EGVDID---DDALKLIAKISDGDLR  225 (346)
T ss_pred             ----HhhHHHhcCC-Cc--chHHHHHHHHHHHHH---hCCCCC---HHHHHHHHHHcCCcHH
Confidence                0033356666 88  999999999888842   222111   45567888 8888874

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.45  E-value=0.00097  Score=71.32  Aligned_cols=158  Identities=16%  Similarity=0.113  Sum_probs=86.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccC---cccc-cCeEEEEEcCCCCCHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNH---VKFY-FDCHAWVRVSLDYDFRRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~wv~vs~~~~~~~~~~~i~  261 (401)
                      ..++||+.++.++++.|....  ..-+.++|++|+|||++|+.+++...   +... .++.+|..     +...    ++
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----ll  254 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LL  254 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hh
Confidence            579999999999999887632  23345799999999999999986311   1111 13444421     1111    11


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC--C-------chhHHHHHhhCCCCCCCcEEEEecCCh
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD--D-------SEIWIDVEELLPDDENGSRVFITVTDP  331 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~--~-------~~~~~~l~~~l~~~~~gs~iivTTR~~  331 (401)
                      .   +.     ....+.+.....+.+.+ +..+.+|+||++..  .       ..+...+..++... ..-++|-+|..+
T Consensus       255 a---G~-----~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~  325 (758)
T PRK11034        255 A---GT-----KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ  325 (758)
T ss_pred             c---cc-----chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence            1   11     00012233333333333 34678999999963  0       11222223322222 234555555544


Q ss_pred             hHHhhch-----hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          332 DLLASLE-----MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       332 ~v~~~~~-----~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      +......     .+....+.++      ++  +.+++..++....
T Consensus       326 E~~~~~~~D~AL~rRFq~I~v~------eP--s~~~~~~IL~~~~  362 (758)
T PRK11034        326 EFSNIFEKDRALARRFQKIDIT------EP--SIEETVQIINGLK  362 (758)
T ss_pred             HHHHHhhccHHHHhhCcEEEeC------CC--CHHHHHHHHHHHH
Confidence            4321110     0133445888      89  9999999999764

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.45  E-value=0.0031  Score=68.92  Aligned_cols=133  Identities=13%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|.+..++.+.+.+...       .....++.++|++|+|||++|+.+..  .....-...+.+..+.-.... ...
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~-~~~  641 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKH-SVA  641 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccc-hHH
Confidence            66899999999999888642       12245788999999999999999987  222212233344444321111 111


Q ss_pred             HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEE
Q 015752          259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVF  325 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~ii  325 (401)
                         .-++.+..   -... ....+...++.   ....+|+||++.. .++.+..|...|.++.           .++-||
T Consensus       642 ---~l~g~~~g---~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI  712 (852)
T TIGR03346       642 ---RLIGAPPG---YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII  712 (852)
T ss_pred             ---HhcCCCCC---ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence               11222211   0111 22233333332   2335899999987 7788888888775541           234477


Q ss_pred             EecCC
Q 015752          326 ITVTD  330 (401)
Q Consensus       326 vTTR~  330 (401)
                      +||..
T Consensus       713 ~TSn~  717 (852)
T TIGR03346       713 MTSNL  717 (852)
T ss_pred             EeCCc
Confidence            78776

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK09183 transposase/IS protein; Provisional

Probab=97.43  E-value=0.00045  Score=64.66  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+.|+|++|+|||+||..+.+
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~  124 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGY  124 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            3577999999999999999976

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.43  E-value=0.0014  Score=65.69  Aligned_cols=156  Identities=15%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             CccccccccHHHHHHHHhc---C--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE---G--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.+..+++|.+.+.-   .        -....-+.++|++|+|||++|+.+++  .....|     +.+...    
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s----  251 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS----  251 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----
Confidence            6788999999888887632   1        12345677999999999999999998  444443     222111    


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--C----------ch---hHHHHHhhCCC--
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--D----------SE---IWIDVEELLPD--  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~----------~~---~~~~l~~~l~~--  317 (401)
                      .+    .....+.         ....+...+.....+.+.+|+||++..  .          .+   .+..+...+..  
T Consensus       252 eL----~~k~~Ge---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~  318 (438)
T PTZ00361        252 EL----IQKYLGD---------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD  318 (438)
T ss_pred             hh----hhhhcch---------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence            11    1111111         122222223323345788999998742  0          00   11122222221  


Q ss_pred             CCCCcEEEEecCChhHHhhc--hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          318 DENGSRVFITVTDPDLLASL--EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       318 ~~~gs~iivTTR~~~v~~~~--~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      ...+.+||+||...+.....  +.+..... .++      +.  +.++..++|..++..
T Consensus       319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~------~P--d~~~R~~Il~~~~~k  369 (438)
T PTZ00361        319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFP------NP--DEKTKRRIFEIHTSK  369 (438)
T ss_pred             ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeC------CC--CHHHHHHHHHHHHhc
Confidence            12356788888766543332  00122333 677      77  889999999987643

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=97.43  E-value=0.0015  Score=62.81  Aligned_cols=125  Identities=10%  Similarity=0.072  Sum_probs=77.1

Q ss_pred             ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-------------------ccCeEEEEEc
Q 015752          187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-------------------YFDCHAWVRV  247 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v  247 (401)
                      .++|-+....++..+..........+.+.|++|+||||+|..+.+..--..                   ..+.+..++.
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~   81 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP   81 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence            456777888888888875443444588999999999999988876321111                   1123334443


Q ss_pred             CCCCC---HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752          248 SLDYD---FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR  323 (401)
Q Consensus       248 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~  323 (401)
                      +....   ..+.++++.+.......                    .++.-++++|++.. ..+.-..+...+-.....+.
T Consensus        82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~  141 (325)
T COG0470          82 SDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR  141 (325)
T ss_pred             cccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence            33332   22333333333222210                    25677899999977 55556677777666667888


Q ss_pred             EEEecCCh
Q 015752          324 VFITVTDP  331 (401)
Q Consensus       324 iivTTR~~  331 (401)
                      +|++|...
T Consensus       142 ~il~~n~~  149 (325)
T COG0470         142 FILITNDP  149 (325)
T ss_pred             EEEEcCCh
Confidence            88888743

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.40  E-value=0.0012  Score=58.10  Aligned_cols=124  Identities=16%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE---cCCCCCHHH------HHHHHHHHcCCCCCCccccCc--C
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR---VSLDYDFRR------ILDDIIKSVIPPSRVSVIIGE--D  277 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~------~~~~i~~~l~~~~~~~~~~~~--~  277 (401)
                      -.+++|+|..|+|||||.+.++.-  . ......+++.   +.. .+...      .+.++++.++...........  .
T Consensus        25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~  100 (180)
T cd03214          25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG  100 (180)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence            358999999999999999999873  2 2233444432   221 12211      111245555443211111222  2


Q ss_pred             HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CC-CcEEEEecCChhHHhh
Q 015752          278 YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-EN-GSRVFITVTDPDLLAS  336 (401)
Q Consensus       278 ~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~-gs~iivTTR~~~v~~~  336 (401)
                      -+...-.+.+.+...+-++++|+.-.  |....+.+...+..- .. +..||++|.+......
T Consensus       101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~  163 (180)
T cd03214         101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR  163 (180)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            23333445556667788999999866  555555555554432 22 5678888888776543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.39  E-value=0.00085  Score=62.06  Aligned_cols=116  Identities=9%  Similarity=0.089  Sum_probs=61.3

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCcccc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVII  274 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~  274 (401)
                      +..+.+....-..+...+.++|.+|+|||+||..+++.  ....-..+++++      ..+++..+-......       
T Consensus        85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~~-------  149 (244)
T PRK07952         85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSNS-------  149 (244)
T ss_pred             HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhhc-------
Confidence            33444444322223457889999999999999999983  333334455553      344554444333211       


Q ss_pred             CcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHH--HHhhCCC-CCCCcEEEEecCC
Q 015752          275 GEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWID--VEELLPD-DENGSRVFITVTD  330 (401)
Q Consensus       275 ~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~-~~~gs~iivTTR~  330 (401)
                      ..+...    +.+.+. +.=||||||+.. ...+|..  +...+.. -.+...+||||..
T Consensus       150 ~~~~~~----~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl  204 (244)
T PRK07952        150 ETSEEQ----LLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS  204 (244)
T ss_pred             cccHHH----HHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence            002222    223343 345889999966 3445553  2222221 1223457777764

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=97.38  E-value=0.0023  Score=61.61  Aligned_cols=171  Identities=9%  Similarity=0.021  Sum_probs=95.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc-------------ccccCeEEEEEcCCCCC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV-------------KFYFDCHAWVRVSLDYD  252 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs~~~~  252 (401)
                      .+++|-+...+.+...+..+ .-.....++|+.|+||+++|..+.+..--             ....+...|+.-.....
T Consensus         4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~   82 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ   82 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence            56889899889898888653 22468889999999999988777542110             11223334443210000


Q ss_pred             HHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 015752          253 FRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVF  325 (401)
Q Consensus       253 ~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ii  325 (401)
                      -..+-..-+...+....   .... ..++. ..+.+.+     .+++-++|+|++.. +......|...+-+.+ .+.+|
T Consensus        83 g~~~~~~~~~~~~~~~~---~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI  157 (314)
T PRK07399         83 GKLITASEAEEAGLKRK---APPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI  157 (314)
T ss_pred             ccccchhhhhhcccccc---ccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence            00000011111110000   0011 22232 2333333     35677899999877 6677788887776655 44555


Q ss_pred             Eec-CChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          326 ITV-TDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       326 vTT-R~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ++| ....+...+.  +.-.. ++.      ++  ++++..+.+.+...
T Consensus       158 Li~~~~~~Ll~TI~--SRcq~i~f~------~l--~~~~~~~~L~~~~~  196 (314)
T PRK07399        158 LIAPSPESLLPTIV--SRCQIIPFY------RL--SDEQLEQVLKRLGD  196 (314)
T ss_pred             EEECChHhCcHHHH--hhceEEecC------CC--CHHHHHHHHHHhhc
Confidence            444 4444444441  22233 888      99  99999999988753

>PRK10536 hypothetical protein; Provisional

Probab=97.37  E-value=0.002  Score=59.53  Aligned_cols=55  Identities=11%  Similarity=0.020  Sum_probs=40.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEE
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAW  244 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w  244 (401)
                      ..+.++......+..+|..    ..++.+.|+.|.|||+||..+..+.-..+.|+..+-
T Consensus        55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI  109 (262)
T PRK10536         55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV  109 (262)
T ss_pred             ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence            5577888889999998865    248899999999999999988764322344554443

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.36  E-value=9.2e-05  Score=65.22  Aligned_cols=99  Identities=19%  Similarity=0.209  Sum_probs=49.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      .-+.++|.+|+|||.||..+.+.  ...+--.+.|++      ..+++..+-..-...         .....   +. .+
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~------~~~L~~~l~~~~~~~---------~~~~~---~~-~l  106 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT------ASDLLDELKQSRSDG---------SYEEL---LK-RL  106 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE------HHHHHHHHHCCHCCT---------THCHH---HH-HH
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee------cCceecccccccccc---------chhhh---cC-cc
Confidence            45889999999999999999873  322223455664      344555543211110         22222   22 22


Q ss_pred             CCceEEEEEeCCCC-CchhHHH--HHhhCCCC-CCCcEEEEecCCh
Q 015752          290 TNKKYFIVLDDVFD-DSEIWID--VEELLPDD-ENGSRVFITVTDP  331 (401)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~~-~~gs~iivTTR~~  331 (401)
                      . +-=||||||+-. ....|..  +...+... .++ .+||||.-.
T Consensus       107 ~-~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~  150 (178)
T PF01695_consen  107 K-RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS  150 (178)
T ss_dssp             H-TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred             c-cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence            2 335788999976 2233321  11111111 123 577888754

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=97.35  E-value=0.004  Score=60.30  Aligned_cols=72  Identities=8%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752          291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI  368 (401)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~  368 (401)
                      +++-++|+|++.. +....+.|...+-+...++.+|+||.+.+ +...+.. ....+.+.      ++  +.+++.+.+.
T Consensus       105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~~------~~--~~~~~~~~L~  175 (328)
T PRK05707        105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQACP------LP--SNEESLQWLQ  175 (328)
T ss_pred             CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeCC------Cc--CHHHHHHHHH
Confidence            4444557799987 77888888888877666788887777754 3333311 11223777      88  9999988887


Q ss_pred             Hhh
Q 015752          369 LHY  371 (401)
Q Consensus       369 ~~a  371 (401)
                      +..
T Consensus       176 ~~~  178 (328)
T PRK05707        176 QAL  178 (328)
T ss_pred             Hhc
Confidence            754

>COG3903 Predicted ATPase [General function prediction only]

Probab=97.35  E-value=0.00018  Score=69.79  Aligned_cols=140  Identities=16%  Similarity=0.133  Sum_probs=90.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE-cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      ..+.+.++|.|||||||++-.+.+   +...|..-.|+. ...-.+...+.-.+...++....       .-+.....+.
T Consensus        13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~   82 (414)
T COG3903          13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV   82 (414)
T ss_pred             hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence            467899999999999999998876   667787555554 44444444455555554554321       3344556677


Q ss_pred             HHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchhCCCcce-ecccccCCCCCCCCh-HHHH
Q 015752          287 DYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKI-RLDSVLFGGPLIRLK-HEAW  364 (401)
Q Consensus       287 ~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~-~ea~  364 (401)
                      ....++|.++|+||..+=...-..+...+..+...-.|+.|+|.....      ..+.. .+.      +|  +. +++.
T Consensus        83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~~~------~L--~~~d~a~  148 (414)
T COG3903          83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV------AGEVHRRVP------SL--SLFDEAI  148 (414)
T ss_pred             HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc------cccccccCC------cc--ccCCchh
Confidence            778899999999997440011122333444455566788899865433      22333 666      66  54 5899


Q ss_pred             HHHHHhh
Q 015752          365 QFFILHY  371 (401)
Q Consensus       365 ~Lf~~~a  371 (401)
                      ++|...+
T Consensus       149 ~lf~~ra  155 (414)
T COG3903         149 ELFVCRA  155 (414)
T ss_pred             HHHHHHH
Confidence            9998876

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.33  E-value=0.0011  Score=60.65  Aligned_cols=101  Identities=14%  Similarity=0.013  Sum_probs=56.9

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH-cCCCCCCc--ccc
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS-VIPPSRVS--VII  274 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~~--~~~  274 (401)
                      |-+.|..+-..-.++.|+|.+|+|||++|.+++..  ....-..++|++.. .++...+ .++... ........  ...
T Consensus        12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~   87 (225)
T PRK09361         12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEP   87 (225)
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeC
Confidence            33334333344579999999999999999998863  32334678899887 5554443 233322 00000000  011


Q ss_pred             Cc--CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752          275 GE--DYQLKKSILRDYLTNKKYFIVLDDVF  302 (401)
Q Consensus       275 ~~--~~~~l~~~l~~~L~~kr~LlVlDdv~  302 (401)
                      .+  +.......+..++..+.-++|+|.+-
T Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~  117 (225)
T PRK09361         88 SSFEEQSEAIRKAEKLAKENVGLIVLDSAT  117 (225)
T ss_pred             CCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence            11  22333444555555667799999983

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.32  E-value=0.00058  Score=61.25  Aligned_cols=113  Identities=16%  Similarity=0.132  Sum_probs=63.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH-HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR-RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      .+|.|+|+.|+||||++..+..  .........++. +..+.... .-...++.+-        ....+.......++..
T Consensus         2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~--------~vg~~~~~~~~~i~~a   70 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT-IEDPIEFVHESKRSLINQR--------EVGLDTLSFENALKAA   70 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE-EcCCccccccCccceeeec--------ccCCCccCHHHHHHHH
Confidence            4788999999999999998776  333333334443 22221100 0000011110        0111223344556777


Q ss_pred             cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          289 LTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       289 L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      |...+=+|++|.+.+ .+.+..+....   ..|..++.|+...++...+
T Consensus        71 Lr~~pd~ii~gEird-~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~~  115 (198)
T cd01131          71 LRQDPDVILVGEMRD-LETIRLALTAA---ETGHLVMSTLHTNSAAKTI  115 (198)
T ss_pred             hcCCcCEEEEcCCCC-HHHHHHHHHHH---HcCCEEEEEecCCcHHHHH
Confidence            766777999999987 66555544432   2356688888887765443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.31  E-value=0.0021  Score=56.49  Aligned_cols=115  Identities=12%  Similarity=0.121  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhccc-Cc--cc---ccC--eEEEEEcCCCCCHHHHHHHHHHHcCCCCC-CccccCc---C
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNN-HV--KF---YFD--CHAWVRVSLDYDFRRILDDIIKSVIPPSR-VSVIIGE---D  277 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-~~~~~~~---~  277 (401)
                      .+++|+|+.|+|||||.+.+..+. .+  ..   .|.  ...|+  .+        .+.+..++.... .......   .
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG   91 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG   91 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence            588999999999999999886321 11  10   111  12232  21        355666664321 1111222   2


Q ss_pred             HHHHHHHHHHHcCCc--eEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHh
Q 015752          278 YQLKKSILRDYLTNK--KYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLA  335 (401)
Q Consensus       278 ~~~l~~~l~~~L~~k--r~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~  335 (401)
                      ..+... +...+..+  +-++++|..-.  |....+.+...+... ..|..||++|.+.+...
T Consensus        92 q~qrl~-laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~  153 (176)
T cd03238          92 ELQRVK-LASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS  153 (176)
T ss_pred             HHHHHH-HHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            233333 44444455  67888899765  555555555444331 24667888888887654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.29  E-value=0.0039  Score=62.06  Aligned_cols=117  Identities=21%  Similarity=0.151  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT  290 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~  290 (401)
                      ++.|.|+.++||||+++.+..  .....   .++++.........                     ...+....+.+.-.
T Consensus        39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~---------------------~l~d~~~~~~~~~~   92 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRI---------------------ELLDLLRAYIELKE   92 (398)
T ss_pred             EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchh---------------------hHHHHHHHHHHhhc
Confidence            999999999999999977665  22222   44444322211010                     11111111111112


Q ss_pred             CceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHH-----hhchhCCCcce-ecccccCCCCCCCChHHHH
Q 015752          291 NKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLL-----ASLEMENGEKI-RLDSVLFGGPLIRLKHEAW  364 (401)
Q Consensus       291 ~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~-----~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~  364 (401)
                      .++.+|+||.|.. ...|......+.+..+. +|++|+-+....     ...  .+.... .+-      ||  +..|-.
T Consensus        93 ~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L--~GR~~~~~l~------Pl--SF~Efl  160 (398)
T COG1373          93 REKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESL--AGRGKDLELY------PL--SFREFL  160 (398)
T ss_pred             cCCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhc--CCCceeEEEC------CC--CHHHHH
Confidence            2778999999999 88899888888776655 888888876543     332  133333 888      99  998886


Q ss_pred             H
Q 015752          365 Q  365 (401)
Q Consensus       365 ~  365 (401)
                      .
T Consensus       161 ~  161 (398)
T COG1373         161 K  161 (398)
T ss_pred             h
Confidence            5

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.28  E-value=0.0012  Score=59.53  Aligned_cols=92  Identities=10%  Similarity=0.021  Sum_probs=54.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCC-CCc---cccCc-CHHHH
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPS-RVS---VIIGE-DYQLK  281 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-~~~---~~~~~-~~~~l  281 (401)
                      ..-.++.|+|++|+|||+++.++...  .......++|++... ++...+.+ ++....... ...   +..+. +....
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~   85 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA   85 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence            34579999999999999999988763  323346789998876 55554433 333220000 000   01111 22334


Q ss_pred             HHHHHHHcCC-ceEEEEEeCCC
Q 015752          282 KSILRDYLTN-KKYFIVLDDVF  302 (401)
Q Consensus       282 ~~~l~~~L~~-kr~LlVlDdv~  302 (401)
                      ...+.+.+.. +.-+||+|.+.
T Consensus        86 ~~~l~~~~~~~~~~lvVIDSis  107 (209)
T TIGR02237        86 IQKTSKFIDRDSASLVVVDSFT  107 (209)
T ss_pred             HHHHHHHHhhcCccEEEEeCcH
Confidence            5555555543 56699999984

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.28  E-value=0.0016  Score=57.30  Aligned_cols=120  Identities=8%  Similarity=-0.024  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc--------cc-cCc--CH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS--------VI-IGE--DY  278 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--------~~-~~~--~~  278 (401)
                      .+++|.|..|+|||||++.+..-...   -...+++.-.   ++......+-..++......        +. ...  .-
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G  102 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG  102 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence            57899999999999999999863211   1222332110   01110001111111000000        00 111  12


Q ss_pred             HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752          279 QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       279 ~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      +...-.+.+.+-.++-+++||+...  |....+.+...+..-..+..||++|.+.....
T Consensus       103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~  161 (178)
T cd03247         103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE  161 (178)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence            2333344555567778899999876  55444444444432223667888888887654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=97.27  E-value=0.00037  Score=58.59  Aligned_cols=107  Identities=14%  Similarity=0.059  Sum_probs=61.4

Q ss_pred             ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc-ccccCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752          189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV-KFYFDCHAWVRVSLDYDFRRILDDIIKSVIPP  267 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~  267 (401)
                      ||....+.++.+.+..-......|.|.|..|+||+++|+.++..... ...|..+-   ... ..     .+++..    
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~-~~-----~~~l~~----   67 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CAS-LP-----AELLEQ----   67 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHC-TC-----HHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhh-Cc-----HHHHHH----
Confidence            56667777777777542233456789999999999999998873222 11221110   000 00     111111    


Q ss_pred             CCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC-CCCcEEEEecCCh
Q 015752          268 SRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD-ENGSRVFITVTDP  331 (401)
Q Consensus       268 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~  331 (401)
                                             -+.--|+|+|+.. +.+....|...+... ....|+|.||+..
T Consensus        68 -----------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~  110 (138)
T PF14532_consen   68 -----------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD  110 (138)
T ss_dssp             -----------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred             -----------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence                                   1334577999977 666666777666533 4678999998853

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.27  E-value=0.0043  Score=61.21  Aligned_cols=133  Identities=14%  Similarity=0.132  Sum_probs=81.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      ....+.|+|..|.|||.|++.+.+  ...........+.++    ......+++..+...             -...+++
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~-------------~~~~Fk~  172 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN-------------EMEKFKE  172 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh-------------hHHHHHH
Confidence            467899999999999999999998  555555533333332    334444444443322             1234455


Q ss_pred             HcCCceEEEEEeCCCC--CchhHH-HHHhhCCC-CCCCcEEEEecCCh---------hHHhhchhCCCcce-ecccccCC
Q 015752          288 YLTNKKYFIVLDDVFD--DSEIWI-DVEELLPD-DENGSRVFITVTDP---------DLLASLEMENGEKI-RLDSVLFG  353 (401)
Q Consensus       288 ~L~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~~-~l~~~~~~  353 (401)
                      ..  .-=++++||++-  ..+.|+ .+...|.. ...|..||+|++..         .+.+..   ...-+ .++     
T Consensus       173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~---~~Gl~~~I~-----  242 (408)
T COG0593         173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRL---EWGLVVEIE-----  242 (408)
T ss_pred             hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHH---hceeEEeeC-----
Confidence            54  334889999966  122232 22222221 12344899999653         233333   33344 999     


Q ss_pred             CCCCCChHHHHHHHHHhhC
Q 015752          354 GPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       354 ~~L~~~~~ea~~Lf~~~a~  372 (401)
                       |+  +.+....++.+++.
T Consensus       243 -~P--d~e~r~aiL~kka~  258 (408)
T COG0593         243 -PP--DDETRLAILRKKAE  258 (408)
T ss_pred             -CC--CHHHHHHHHHHHHH
Confidence             99  99999999999874

>PHA00729 NTP-binding motif containing protein

Probab=97.26  E-value=0.0022  Score=58.21  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=24.8

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +++.+..  .+...|.|.|.+|+||||||..+.+
T Consensus         8 ~~~~l~~--~~f~nIlItG~pGvGKT~LA~aLa~   39 (226)
T PHA00729          8 IVSAYNN--NGFVSAVIFGKQGSGKTTYALKVAR   39 (226)
T ss_pred             HHHHHhc--CCeEEEEEECCCCCCHHHHHHHHHH
Confidence            4444443  3456788999999999999999987

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.26  E-value=0.0041  Score=53.88  Aligned_cols=119  Identities=14%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             cccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc------------------cccCeEEEEEcCCC---
Q 015752          192 ERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK------------------FYFDCHAWVRVSLD---  250 (401)
Q Consensus       192 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~vs~~---  250 (401)
                      +...+.|.+.+..+ .-...+.++|+.|+||+++|..+.+..--.                  .......|+.-...   
T Consensus         3 ~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~   81 (162)
T PF13177_consen    3 EEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS   81 (162)
T ss_dssp             HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS
T ss_pred             HHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch
Confidence            44455566655442 334567899999999999998876521111                  11233344432222   


Q ss_pred             CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC
Q 015752          251 YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVT  329 (401)
Q Consensus       251 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR  329 (401)
                      ..++.+ +.+...+....                    ..+++=++|||++.. ..+.+..|+..+-+...++.+|++|+
T Consensus        82 i~i~~i-r~i~~~~~~~~--------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~  140 (162)
T PF13177_consen   82 IKIDQI-REIIEFLSLSP--------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN  140 (162)
T ss_dssp             BSHHHH-HHHHHHCTSS---------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred             hhHHHH-HHHHHHHHHHH--------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence            222222 13333332221                    024566899999987 77888888888877777899988888


Q ss_pred             Chh
Q 015752          330 DPD  332 (401)
Q Consensus       330 ~~~  332 (401)
                      +.+
T Consensus       141 ~~~  143 (162)
T PF13177_consen  141 NPS  143 (162)
T ss_dssp             -GG
T ss_pred             ChH
Confidence            765

...

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.26  E-value=0.0022  Score=58.81  Aligned_cols=95  Identities=12%  Similarity=0.046  Sum_probs=57.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------cc-cC
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------VI-IG  275 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------~~-~~  275 (401)
                      ..-.++.|.|.+|+|||+|+.+++........    ...++|++....++...+ .+++...+......      .. ..
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~   95 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN   95 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence            34578999999999999999999753222221    358899998887765444 33444433221110      00 11


Q ss_pred             c-CHHHHHHHHHHHcC-C-ceEEEEEeCCC
Q 015752          276 E-DYQLKKSILRDYLT-N-KKYFIVLDDVF  302 (401)
Q Consensus       276 ~-~~~~l~~~l~~~L~-~-kr~LlVlDdv~  302 (401)
                      . +.......+.+.+. . +.-|||+|.+.
T Consensus        96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis  125 (235)
T cd01123          96 SDHQLQLLEELEAILIESSRIKLVIVDSVT  125 (235)
T ss_pred             HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence            1 22334444555553 3 67799999984

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0011  Score=67.17  Aligned_cols=95  Identities=18%  Similarity=0.232  Sum_probs=66.0

Q ss_pred             CCccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          185 RLDISHFERGREELFDLLIEG----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       185 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      +.++-|.++.+.++.+++..-          -...+=|.++|++|+|||.||+.+++  +..-.|     +.++.+    
T Consensus       189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp----  257 (802)
T KOG0733|consen  189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP----  257 (802)
T ss_pred             hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch----
Confidence            378889999999998887641          12345678999999999999999998  433333     333332    


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~  303 (401)
                          +|+....+.         +.+.+.+...+.-..-++++.+|++.-
T Consensus       258 ----eivSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeIDA  293 (802)
T KOG0733|consen  258 ----EIVSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEIDA  293 (802)
T ss_pred             ----hhhcccCcc---------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence                344444333         555565556666667899999999965

>PRK06921 hypothetical protein; Provisional

Probab=97.21  E-value=0.001  Score=62.43  Aligned_cols=37  Identities=16%  Similarity=0.051  Sum_probs=27.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccc-cCeEEEEEc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFY-FDCHAWVRV  247 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v  247 (401)
                      ...+.++|.+|+|||+||..+++  .+... ...+++++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~  154 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF  154 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence            45688999999999999999998  44333 344566654

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.21  E-value=0.0023  Score=54.48  Aligned_cols=40  Identities=13%  Similarity=0.154  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD  252 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~  252 (401)
                      ++.|.|.+|+||||++..+..  .....-..++|+.......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence            367999999999999999987  3333345677887766543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.18  E-value=0.01  Score=57.58  Aligned_cols=166  Identities=8%  Similarity=0.011  Sum_probs=85.8

Q ss_pred             cccc-ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          187 DISH-FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       187 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .++| -+..++.+...+..+ .-.....++|+.|+||||+|..+.+..--.+.....       .+..-...+.+.....
T Consensus         6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~h   77 (329)
T PRK08058          6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNH   77 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCC
Confidence            4556 455566666666542 334567899999999999998886521111100000       0000000001100000


Q ss_pred             CCCCCc-cccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhc
Q 015752          266 PPSRVS-VIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASL  337 (401)
Q Consensus       266 ~~~~~~-~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~  337 (401)
                      ++.... .+-.. ..+++.+.+...    ..+.+=++|+|++.. +.+..+.|...+-+...++.+|++|.+.. +...+
T Consensus        78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI  157 (329)
T PRK08058         78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI  157 (329)
T ss_pred             CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence            000000 00001 223333322221    234556799999876 66677888888887777787877776543 33333


Q ss_pred             hhCCCcce-ecccccCCCCCCCChHHHHHHHHHh
Q 015752          338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILH  370 (401)
Q Consensus       338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~  370 (401)
                        ...-.+ ++.      ++  ++++..+.+.+.
T Consensus       158 --rSRc~~i~~~------~~--~~~~~~~~L~~~  181 (329)
T PRK08058        158 --LSRCQVVEFR------PL--PPESLIQRLQEE  181 (329)
T ss_pred             --HhhceeeeCC------CC--CHHHHHHHHHHc
Confidence              122233 788      88  888887777653

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.18  E-value=0.0015  Score=71.17  Aligned_cols=132  Identities=11%  Similarity=0.088  Sum_probs=75.1

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|-+..++.+.+.+...       +.....+.++|+.|+|||+||+.+.+  .+-..-...+-+..+.-.+...   
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~---  583 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHT---  583 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcccccc---
Confidence            66889888888888877531       22245677899999999999999876  2211112233333433211111   


Q ss_pred             HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCce-EEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEE
Q 015752          259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKK-YFIVLDDVFD-DSEIWIDVEELLPDD-----------ENGSRV  324 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~i  324 (401)
                       +..-++.+.+   -... ....+    .+.++.++ .+|+||++.. +++.++.|...+..+           ...+-|
T Consensus       584 -~~~l~g~~~g---yvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~  655 (821)
T CHL00095        584 -VSKLIGSPPG---YVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI  655 (821)
T ss_pred             -HHHhcCCCCc---ccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence             1111222111   0111 22223    33444444 5889999987 677888888777653           134556


Q ss_pred             EEecCC
Q 015752          325 FITVTD  330 (401)
Q Consensus       325 ivTTR~  330 (401)
                      |+||..
T Consensus       656 I~Tsn~  661 (821)
T CHL00095        656 IMTSNL  661 (821)
T ss_pred             EEeCCc
Confidence            777764

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0093  Score=60.78  Aligned_cols=154  Identities=15%  Similarity=0.180  Sum_probs=86.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      ..=|.+||++|+|||-||+.++|  +.+-.|     +++-.+        ++++..-+.         +...+.....+.
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVGE---------SErAVR~vFqRA  600 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVGE---------SERAVRQVFQRA  600 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhhh---------HHHHHHHHHHHh
Confidence            44577999999999999999999  555555     333222        222222121         333333334444


Q ss_pred             cCCceEEEEEeCCCC------Cch------hHHHHHhhCCCC--CCCcEEEEecCChhHHhh--chhCCCcce-eccccc
Q 015752          289 LTNKKYFIVLDDVFD------DSE------IWIDVEELLPDD--ENGSRVFITVTDPDLLAS--LEMENGEKI-RLDSVL  351 (401)
Q Consensus       289 L~~kr~LlVlDdv~~------~~~------~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~--~~~~~~~~~-~l~~~~  351 (401)
                      =..-++.|.||.+..      +..      ...+|..-+...  ..|--||-.|..+++..-  .+-+.-+.+ -++   
T Consensus       601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~---  677 (802)
T KOG0733|consen  601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG---  677 (802)
T ss_pred             hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec---
Confidence            346899999999854      112      234455555432  345566767766665322  211233444 455   


Q ss_pred             CCCCCCCChHHHHHHHHHhhC--CCCCcCcccchHHHHHHHHHhccCCC
Q 015752          352 FGGPLIRLKHEAWQFFILHYG--SMPLENYLQGEAFRQLGDKFVLCWSY  398 (401)
Q Consensus       352 ~~~~L~~~~~ea~~Lf~~~a~--~~~~~~~~~~~~l~~i~~~i~~C~~~  398 (401)
                         .-  +.+|-..+++....  ..+....   -.|.+||+. -+|.||
T Consensus       678 ---lP--n~~eR~~ILK~~tkn~k~pl~~d---Vdl~eia~~-~~c~gf  717 (802)
T KOG0733|consen  678 ---LP--NAEERVAILKTITKNTKPPLSSD---VDLDEIARN-TKCEGF  717 (802)
T ss_pred             ---CC--CHHHHHHHHHHHhccCCCCCCcc---cCHHHHhhc-ccccCC
Confidence               55  88999999998886  2233222   224444331 267776

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.15  E-value=0.00094  Score=62.25  Aligned_cols=75  Identities=17%  Similarity=0.100  Sum_probs=46.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      +..-+.++|.+|+|||.||..+.+... +..+ .+.++      +..+++.++........        ...    .|.+
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~------~~~el~~~Lk~~~~~~~--------~~~----~l~~  163 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFI------TAPDLLSKLKAAFDEGR--------LEE----KLLR  163 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEE------EHHHHHHHHHHHHhcCc--------hHH----HHHH
Confidence            455678999999999999999999433 2223 34444      44566666665544321        112    2222


Q ss_pred             HcCCceEEEEEeCCCC
Q 015752          288 YLTNKKYFIVLDDVFD  303 (401)
Q Consensus       288 ~L~~kr~LlVlDdv~~  303 (401)
                      .+ .+-=||||||+-.
T Consensus       164 ~l-~~~dlLIiDDlG~  178 (254)
T COG1484         164 EL-KKVDLLIIDDIGY  178 (254)
T ss_pred             Hh-hcCCEEEEecccC
Confidence            12 2335899999966

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.13  E-value=0.0043  Score=66.83  Aligned_cols=46  Identities=20%  Similarity=0.189  Sum_probs=36.7

Q ss_pred             CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++.|.+..++++.+.+...           -...+-+.++|++|+|||+||+.+++
T Consensus       178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~  234 (733)
T TIGR01243       178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN  234 (733)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence            77899999999888776321           12235678999999999999999988

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.12  E-value=0.0069  Score=52.59  Aligned_cols=115  Identities=15%  Similarity=0.114  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC---eEEEEEcCCCCCH--HHHHHHHHHHcCCCCCCccccCcCHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD---CHAWVRVSLDYDF--RRILDDIIKSVIPPSRVSVIIGEDYQLK  281 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~---~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l  281 (401)
                      .+++|+|..|.|||||++.+..-.... ..  ++   ...+  +.+....  ..+.+.+... ...     ..+ .-+..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~-~~~-----~LS-~G~~~   98 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP-WDD-----VLS-GGEQQ   98 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc-CCC-----CCC-HHHHH
Confidence            578999999999999999998632211 11  11   1122  2332211  1222222210 010     122 22333


Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      .-.+.+.+..++-++++|.--.  |......+...+...  +..||++|.+.....
T Consensus        99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~  152 (166)
T cd03223          99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK  152 (166)
T ss_pred             HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence            3444555556777889999765  555555555544432  356888888876654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=97.12  E-value=0.0014  Score=61.28  Aligned_cols=92  Identities=12%  Similarity=0.238  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--cccCc------CHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--VIIGE------DYQ  279 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~~~~~------~~~  279 (401)
                      .-++|.|.+|+|||||++.+++  .++.+|. .++++-+++... +.++..++...-.......  ...++      ...
T Consensus        70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~  147 (274)
T cd01133          70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA  147 (274)
T ss_pred             CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence            4578999999999999999998  5554554 566667777654 4455555554311110000  00111      111


Q ss_pred             HHHHHHHHHc--C-CceEEEEEeCCCC
Q 015752          280 LKKSILRDYL--T-NKKYFIVLDDVFD  303 (401)
Q Consensus       280 ~l~~~l~~~L--~-~kr~LlVlDdv~~  303 (401)
                      ...-.+.+++  + |+.+||++||+-.
T Consensus       148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr  174 (274)
T cd01133         148 LTGLTMAEYFRDEEGQDVLLFIDNIFR  174 (274)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence            2233445555  3 8999999999843

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.11  E-value=0.0017  Score=62.74  Aligned_cols=101  Identities=9%  Similarity=0.102  Sum_probs=54.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      .-+.++|.+|+|||+||..+++  .+-..-..++++++      .+++..+...-...       ..+...   .+ +.+
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~------~~l~~~l~~~~~~~-------~~~~~~---~~-~~l  244 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA------DELIEILREIRFNN-------DKELEE---VY-DLL  244 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH------HHHHHHHHHHHhcc-------chhHHH---HH-HHh
Confidence            5688999999999999999988  33333335566644      33444333221111       001111   12 222


Q ss_pred             CCceEEEEEeCCCC-CchhH--HHHHhhCCCC-CCCcEEEEecCC
Q 015752          290 TNKKYFIVLDDVFD-DSEIW--IDVEELLPDD-ENGSRVFITVTD  330 (401)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~~-~~gs~iivTTR~  330 (401)
                      . .-=||||||+.. ....|  ..|...+... ..+..+||||..
T Consensus       245 ~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl  288 (329)
T PRK06835        245 I-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL  288 (329)
T ss_pred             c-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence            2 235899999955 12233  3333333321 234568888875

>cd01394 radB RadB

Probab=97.10  E-value=0.0031  Score=57.30  Aligned_cols=100  Identities=16%  Similarity=0.044  Sum_probs=54.6

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc---ccc
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS---VII  274 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~  274 (401)
                      |-+.|..+=..-.++.|.|.+|+||||++.+++..  ....-..++|++....+.  .-+++++..........   ...
T Consensus         8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~   83 (218)
T cd01394           8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEP   83 (218)
T ss_pred             HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeC
Confidence            33434333344578999999999999999998863  222234677887655543  33334433211000000   011


Q ss_pred             CcCHHH---HHHHHHHHcCCceEEEEEeCCC
Q 015752          275 GEDYQL---KKSILRDYLTNKKYFIVLDDVF  302 (401)
Q Consensus       275 ~~~~~~---l~~~l~~~L~~kr~LlVlDdv~  302 (401)
                      . +..+   ....+...+..+.-+||+|.+-
T Consensus        84 ~-~~~~~~~~~~~~~~~~~~~~~lvvIDsi~  113 (218)
T cd01394          84 M-DFNEQGRAIQETETFADEKVDLVVVDSAT  113 (218)
T ss_pred             C-CHHHHHHHHHHHHHHHhcCCcEEEEechH
Confidence            1 2222   2334445555456799999984

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.10  E-value=0.00038  Score=56.82  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|+|.|++|+||||+|+.+.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

...

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.015  Score=58.41  Aligned_cols=134  Identities=18%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHH
Q 015752          206 SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSI  284 (401)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~  284 (401)
                      ..++..+.+.|++|+|||+||..++.    ...|+.+--++...-             ++..       ++ ....+...
T Consensus       535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~s-------EsaKc~~i~k~  590 (744)
T KOG0741|consen  535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGLS-------ESAKCAHIKKI  590 (744)
T ss_pred             cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCcc-------HHHHHHHHHHH
Confidence            34567788999999999999999976    566775443321110             1110       00 11222223


Q ss_pred             HHHHcCCceEEEEEeCCCCCchhH------------HHHHhhCCCC-CCCcE--EEEecCChhHHhhchh-CCCcce-ec
Q 015752          285 LRDYLTNKKYFIVLDDVFDDSEIW------------IDVEELLPDD-ENGSR--VFITVTDPDLLASLEM-ENGEKI-RL  347 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~~~~~~------------~~l~~~l~~~-~~gs~--iivTTR~~~v~~~~~~-~~~~~~-~l  347 (401)
                      .....+..=-.||+||+.. --+|            ..|+..|... ..|-|  |+-||....+...|.+ .+.... .+
T Consensus       591 F~DAYkS~lsiivvDdiEr-LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V  669 (744)
T KOG0741|consen  591 FEDAYKSPLSIIVVDDIER-LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV  669 (744)
T ss_pred             HHHhhcCcceEEEEcchhh-hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence            3333355667899999965 3333            2333334332 23334  4557887888887732 223333 55


Q ss_pred             ccccCCCCCCCChHHHHHHHHHhh
Q 015752          348 DSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       348 ~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      +      -| ...++..+.++..-
T Consensus       670 p------nl-~~~~~~~~vl~~~n  686 (744)
T KOG0741|consen  670 P------NL-TTGEQLLEVLEELN  686 (744)
T ss_pred             C------cc-CchHHHHHHHHHcc
Confidence            5      55 13477777777664

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=97.08  E-value=0.0017  Score=60.71  Aligned_cols=93  Identities=15%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------cccCc--
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------VIIGE--  276 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------~~~~~--  276 (401)
                      -.+.=|+|.+|+|||+|+.+++-...+..    .=..++|++-...+....+. +|++.........      ....+  
T Consensus        38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~  116 (256)
T PF08423_consen   38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE  116 (256)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred             CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence            45889999999999999988865433322    22469999998889877764 5666654321111      01111  


Q ss_pred             CHHHHHHHHHHHc-CCceEEEEEeCCC
Q 015752          277 DYQLKKSILRDYL-TNKKYFIVLDDVF  302 (401)
Q Consensus       277 ~~~~l~~~l~~~L-~~kr~LlVlDdv~  302 (401)
                      +...+...+...+ ..+--|||+|.+-
T Consensus       117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa  143 (256)
T PF08423_consen  117 ELLELLEQLPKLLSESKIKLIVIDSIA  143 (256)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred             HHHHHHHHHHhhccccceEEEEecchH
Confidence            3333334444444 3455699999983

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.08  E-value=0.0054  Score=55.92  Aligned_cols=101  Identities=12%  Similarity=0.073  Sum_probs=58.9

Q ss_pred             HHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc------CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c
Q 015752          200 DLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF------DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V  272 (401)
Q Consensus       200 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~  272 (401)
                      +.|..+-..-.++.|.|.+|+|||+|+..++...  ...-      ..++|+.....++...+. .+........... .
T Consensus        10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~   86 (226)
T cd01393          10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLD   86 (226)
T ss_pred             HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhc
Confidence            3333333445799999999999999999987532  1222      467899887777755443 3333322211100 0


Q ss_pred             c---cCc-CHHHHHHHHHHHcC----CceEEEEEeCCCC
Q 015752          273 I---IGE-DYQLKKSILRDYLT----NKKYFIVLDDVFD  303 (401)
Q Consensus       273 ~---~~~-~~~~l~~~l~~~L~----~kr~LlVlDdv~~  303 (401)
                      .   ... +.+++...+.....    .+.-|||+|.+..
T Consensus        87 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~  125 (226)
T cd01393          87 NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAA  125 (226)
T ss_pred             cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence            0   111 45555555555542    3556999999853

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.08  E-value=0.00057  Score=66.20  Aligned_cols=47  Identities=13%  Similarity=0.143  Sum_probs=40.7

Q ss_pred             CccccccccHHHHHHHHhcC----CCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          186 LDISHFERGREELFDLLIEG----SSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|.++.++++++++...    +...+++.++|++|+||||||+.+.+.
T Consensus        51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~  101 (361)
T smart00763       51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG  101 (361)
T ss_pred             hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999752    335688999999999999999999874

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.08  E-value=0.0061  Score=51.64  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=60.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      .+++|+|..|.|||||++.+..-..   .....+|+.-..             .+..-.    ..+ ..+...-.+...+
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~----~lS-~G~~~rv~laral   85 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE----QLS-GGEKMRLALAKLL   85 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc----cCC-HHHHHHHHHHHHH
Confidence            5889999999999999999986322   223344432100             000000    011 1222233345555


Q ss_pred             CCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          290 TNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       290 ~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      ..++-++++|+.-.  |......+...+...  +..||++|.+.+....
T Consensus        86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~  132 (144)
T cd03221          86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ  132 (144)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence            56777899999866  555556665555432  2468888888766544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0016  Score=68.89  Aligned_cols=133  Identities=14%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             CccccccccHHHHHHHHhc-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|-+..+..+.+.+..       .+....+....|+.|+|||.||+.+..  .+-+.=+..+-+..|.-. ...   
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~-EkH---  564 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRIDMSEYM-EKH---  564 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCccceeechHHHH-HHH---
Confidence            6689999999988888864       234566888899999999999998876  221111333333333311 111   


Q ss_pred             HHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceE-EEEEeCCCC-CchhHHHHHhhCCCC----CC-------CcEEE
Q 015752          259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKY-FIVLDDVFD-DSEIWIDVEELLPDD----EN-------GSRVF  325 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~-~~~~~~~l~~~l~~~----~~-------gs~ii  325 (401)
                      .+..-++.+.+-    - ..++ -..|.+..+.++| +|.||.+.. .++.++-+...|.++    +.       ++-||
T Consensus       565 sVSrLIGaPPGY----V-Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII  638 (786)
T COG0542         565 SVSRLIGAPPGY----V-GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII  638 (786)
T ss_pred             HHHHHhCCCCCC----c-eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence            122222332211    1 1111 2345556667777 788999987 577778888877765    22       34567


Q ss_pred             EecCC
Q 015752          326 ITVTD  330 (401)
Q Consensus       326 vTTR~  330 (401)
                      +||.-
T Consensus       639 mTSN~  643 (786)
T COG0542         639 MTSNA  643 (786)
T ss_pred             Eeccc
Confidence            77764

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.06  E-value=0.0012  Score=57.88  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=28.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEE
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWV  245 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  245 (401)
                      ...+|.+.|++|+||||+|+.+++  .....+...+++
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~   41 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL   41 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence            456899999999999999999998  555555555555

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.06  E-value=0.0013  Score=70.29  Aligned_cols=116  Identities=11%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|-++.++.+.+.+...       ......+.++|++|+|||+||+.+..  ....   ..+.++.+.-....    
T Consensus       458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~---~~i~id~se~~~~~----  528 (758)
T PRK11034        458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGI---ELLRFDMSEYMERH----  528 (758)
T ss_pred             ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCC---CcEEeechhhcccc----
Confidence            44778888888888887631       22345788999999999999999987  3322   22334433321111    


Q ss_pred             HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcC-CceEEEEEeCCCC-CchhHHHHHhhCCC
Q 015752          259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLT-NKKYFIVLDDVFD-DSEIWIDVEELLPD  317 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~-~kr~LlVlDdv~~-~~~~~~~l~~~l~~  317 (401)
                      .+..-++.+...   ... ....    +.+.+. ....+|+||++.. .++.+..|...+.+
T Consensus       529 ~~~~LiG~~~gy---vg~~~~g~----L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~  583 (758)
T PRK11034        529 TVSRLIGAPPGY---VGFDQGGL----LTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN  583 (758)
T ss_pred             cHHHHcCCCCCc---ccccccch----HHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence            111112222110   000 1112    222332 3446999999987 67777877776654

>PRK07261 topology modulation protein; Provisional

Probab=97.04  E-value=0.0012  Score=57.66  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|++|+||||||+.+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999763

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0084  Score=61.57  Aligned_cols=162  Identities=15%  Similarity=0.103  Sum_probs=88.6

Q ss_pred             CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      +++-|.++-+.+|.+.+.-.           -+..+-|..+|+||+|||++|+.+.+  ..+-.|     +.+..+    
T Consensus       434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp----  502 (693)
T KOG0730|consen  434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP----  502 (693)
T ss_pred             hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----
Confidence            66667777666665544321           24567788999999999999999998  444344     333221    


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-----------chhHHHHHhhCCCCCCCc
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-----------SEIWIDVEELLPDDENGS  322 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l~~~~~gs  322 (401)
                          +++...-+.         ++..+.+..++.=+--+++|.||.+.. .           ...+.+|..-+.......
T Consensus       503 ----EL~sk~vGe---------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k  569 (693)
T KOG0730|consen  503 ----ELFSKYVGE---------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK  569 (693)
T ss_pred             ----HHHHHhcCc---------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence                122222221         333333333333344568888888754 1           112334444443322232


Q ss_pred             EEE-E--ecCChhHHhhc-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCc
Q 015752          323 RVF-I--TVTDPDLLASL-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENY  379 (401)
Q Consensus       323 ~ii-v--TTR~~~v~~~~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~  379 (401)
                      .|+ |  |.|...+-..+ +-+..+.+ .++      +-  +.+...++|..++...+..+.
T Consensus       570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVp------lP--D~~aR~~Ilk~~~kkmp~~~~  623 (693)
T KOG0730|consen  570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVP------LP--DLEARLEILKQCAKKMPFSED  623 (693)
T ss_pred             cEEEEeccCChhhcCHHHcCCcccceeEeec------Cc--cHHHHHHHHHHHHhcCCCCcc
Confidence            333 2  44433332222 11234555 666      44  778888999999976666544

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.02  E-value=0.0049  Score=59.22  Aligned_cols=104  Identities=12%  Similarity=0.055  Sum_probs=62.2

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc----cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK----FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V  272 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~  272 (401)
                      |-+.|..+=..-.++-|+|.+|+|||+|+.+++-.....    ..=..++|++....+++..+. ++++.++.+.... +
T Consensus        85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~  163 (313)
T TIGR02238        85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLD  163 (313)
T ss_pred             HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcC
Confidence            333444333345788999999999999998876432221    112478999999988888765 4566665542210 0


Q ss_pred             c---cCc-CHHH---HHHHHHHHcC-CceEEEEEeCCC
Q 015752          273 I---IGE-DYQL---KKSILRDYLT-NKKYFIVLDDVF  302 (401)
Q Consensus       273 ~---~~~-~~~~---l~~~l~~~L~-~kr~LlVlDdv~  302 (401)
                      +   ... +.++   +...+...+. ++--|||+|.+-
T Consensus       164 ~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis  201 (313)
T TIGR02238       164 NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM  201 (313)
T ss_pred             cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence            0   011 2333   3334443443 455689999985

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.01  E-value=0.0015  Score=59.21  Aligned_cols=123  Identities=13%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      .+++.|+|+.|.|||||.+.+...... .+-...+|..  . .. ...+.++...+.....-....+ +...-..++...
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~-~~-~~~~d~i~~~l~~~~si~~~~S-~f~~el~~l~~~  102 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--S-AT-IGLVDKIFTRMSSRESVSSGQS-AFMIDLYQVSKA  102 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--C-cE-EeeeeeeeeeeCCccChhhccc-hHHHHHHHHHHH
Confidence            478899999999999999988732111 1111111110  0 00 0011222222222211000111 222222222222


Q ss_pred             --cCCceEEEEEeCCCC--CchhHH----HHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          289 --LTNKKYFIVLDDVFD--DSEIWI----DVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       289 --L~~kr~LlVlDdv~~--~~~~~~----~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                        +..++.|++||..-.  |+.+..    .+...+... ..+..+|+||.+.+++...
T Consensus       103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence              246789999999976  333211    222233222 2345799999999887765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.00  E-value=0.0033  Score=54.87  Aligned_cols=120  Identities=16%  Similarity=0.104  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC--CCCHHHHHHHHHHHcCC--CCCCcc------ccCcCHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL--DYDFRRILDDIIKSVIP--PSRVSV------IIGEDYQ  279 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~~~------~~~~~~~  279 (401)
                      .+++|+|..|.|||||.+.++.-  .. .....+++.-..  .......    ...++.  +.....      ..=+.-+
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~--~~-~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~  101 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRL--YD-PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ  101 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence            58899999999999999999873  21 223333332100  0011111    011110  000000      0000112


Q ss_pred             HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      ...-.+...+..++-+++||+-..  |......+...+..-..+..||++|.+......
T Consensus       102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  160 (171)
T cd03228         102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD  160 (171)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence            222334555566778999999876  555555554444332235678888888766543

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04296 thymidine kinase; Provisional

Probab=97.00  E-value=0.0016  Score=58.07  Aligned_cols=113  Identities=12%  Similarity=-0.002  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      .++.|+|..|.||||++..+..  +...+...++.+.  ..++.......++.+++..... ..+. ...++...+.+ .
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~-~~~~-~~~~~~~~~~~-~   75 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA-IPVS-SDTDIFELIEE-E   75 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccc-eEeC-ChHHHHHHHHh-h
Confidence            4678899999999999988877  3333333334342  1112222233455555432110 0011 34455555555 3


Q ss_pred             CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 015752          290 TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP  331 (401)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~  331 (401)
                      .++.-+||+|.+.- +.++..++...+.  ..|..||+|.++.
T Consensus        76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~  116 (190)
T PRK04296         76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT  116 (190)
T ss_pred             CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence            34556999999854 3333344444332  3578899999983

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.99  E-value=0.0037  Score=54.16  Aligned_cols=116  Identities=11%  Similarity=-0.026  Sum_probs=64.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC--CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL--DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      .+++|.|..|+|||||.+.++.-.   ......+++.-..  ..+......   ..++..    ...+ .-+...-.+.+
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~----~qLS-~G~~qrl~lar   95 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV----YQLS-VGERQMVEIAR   95 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE----EecC-HHHHHHHHHHH
Confidence            488999999999999999998622   2234445543111  111111111   111110    0011 22333344555


Q ss_pred             HcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          288 YLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       288 ~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      .+-.++-++++|+.-.  |......+...+..- ..|..||++|.+......
T Consensus        96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  147 (163)
T cd03216          96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE  147 (163)
T ss_pred             HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            5566778889999866  555555555554332 236678888888765443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.98  E-value=0.0046  Score=60.08  Aligned_cols=101  Identities=14%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             HHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc----cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-cc--
Q 015752          201 LLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK----FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-VI--  273 (401)
Q Consensus       201 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~--  273 (401)
                      .|..+=..-.++-|.|.+|+|||+|+.+++-.....    ..-..++|+.....|++..+. ++++.++.+.... ++  
T Consensus       118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~  196 (344)
T PLN03187        118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNII  196 (344)
T ss_pred             hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEE
Confidence            343333345788899999999999999886432221    112478999999999988765 4566665542211 00  


Q ss_pred             -cCc-CHHHH---HHHHHHHc-CCceEEEEEeCCC
Q 015752          274 -IGE-DYQLK---KSILRDYL-TNKKYFIVLDDVF  302 (401)
Q Consensus       274 -~~~-~~~~l---~~~l~~~L-~~kr~LlVlDdv~  302 (401)
                       ... +.+++   ...+...+ ..+--|||+|.+-
T Consensus       197 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit  231 (344)
T PLN03187        197 YARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI  231 (344)
T ss_pred             EecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence             111 33333   33333333 2345689999984

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.97  E-value=0.0067  Score=58.55  Aligned_cols=105  Identities=12%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V  272 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~  272 (401)
                      +-+.|..+=..-.++-|+|++|+|||+++.+++........    =..++|++....++...+. ++++.++...... .
T Consensus        91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~  169 (317)
T PRK04301         91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLD  169 (317)
T ss_pred             HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhc
Confidence            33444333334678899999999999999998764222111    1479999998888877654 4445554332110 0


Q ss_pred             -----ccCc--CHHHHHHHHHHHcCC--ceEEEEEeCCCC
Q 015752          273 -----IIGE--DYQLKKSILRDYLTN--KKYFIVLDDVFD  303 (401)
Q Consensus       273 -----~~~~--~~~~l~~~l~~~L~~--kr~LlVlDdv~~  303 (401)
                           ....  ....+...+...+..  +--|||+|.+-.
T Consensus       170 ~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa  209 (317)
T PRK04301        170 NIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTA  209 (317)
T ss_pred             cEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence                 0111  222344555555543  445999999843

>PRK06696 uridine kinase; Validated

Probab=96.96  E-value=0.00091  Score=61.12  Aligned_cols=41  Identities=22%  Similarity=0.118  Sum_probs=34.2

Q ss_pred             ccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          191 FERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       191 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.+-+++|.+.+.. ...+..+|+|.|.+|+||||||+.+..
T Consensus         3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696          3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            56667788888864 345678999999999999999999987

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.96  E-value=0.00077  Score=56.63  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|.++|++|+||||+|+.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999985

...

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.95  E-value=0.0038  Score=54.92  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|.|+|++|+||||+|+.+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.95  E-value=0.00074  Score=56.65  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC
Q 015752          212 VAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT  290 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~  290 (401)
                      |.++|++|+|||+||+.+++  ..    + ...-+.++...+..+++...--.    .... .+..  ..+...+     
T Consensus         2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~----~~~~-~~~~--~~l~~a~-----   63 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPS----NGQF-EFKD--GPLVRAM-----   63 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET-----TTTT-CEEE---CCCTTH-----
T ss_pred             EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeec----cccc-cccc--ccccccc-----
Confidence            56899999999999999987  33    3 23345677777777654322211    1000 0110  0000000     


Q ss_pred             CceEEEEEeCCCC-CchhHHHHHhhCC
Q 015752          291 NKKYFIVLDDVFD-DSEIWIDVEELLP  316 (401)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~  316 (401)
                      .+..++|||++.. ++..+..|...+.
T Consensus        64 ~~~~il~lDEin~a~~~v~~~L~~ll~   90 (139)
T PF07728_consen   64 RKGGILVLDEINRAPPEVLESLLSLLE   90 (139)
T ss_dssp             HEEEEEEESSCGG--HHHHHTTHHHHS
T ss_pred             cceeEEEECCcccCCHHHHHHHHHHHh
Confidence            1889999999975 4555555554443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=96.94  E-value=0.0022  Score=57.53  Aligned_cols=128  Identities=16%  Similarity=0.123  Sum_probs=63.5

Q ss_pred             cccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcC----CCC-----CHHH----H
Q 015752          190 HFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS----LDY-----DFRR----I  256 (401)
Q Consensus       190 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-----~~~~----~  256 (401)
                      .+.......++.|..    ..++.+.|++|.|||.||....-+.-..+.|+..+++.-.    +..     +..+    .
T Consensus         4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~   79 (205)
T PF02562_consen    4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY   79 (205)
T ss_dssp             --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred             CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence            455566777777773    4588899999999999998887654445788888877521    110     1000    1


Q ss_pred             HHHHHHHcCCCCCCccccCcCHHHHHHH------HHHHcCCc---eEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE
Q 015752          257 LDDIIKSVIPPSRVSVIIGEDYQLKKSI------LRDYLTNK---KYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFI  326 (401)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~------l~~~L~~k---r~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iiv  326 (401)
                      +.-+.+.+..-...    . ..+.+...      -..+++|+   ..+||+|..-+ .+.++..+..   ..+.||++|+
T Consensus        80 ~~p~~d~l~~~~~~----~-~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~  151 (205)
T PF02562_consen   80 LRPIYDALEELFGK----E-KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIII  151 (205)
T ss_dssp             THHHHHHHTTTS-T----T-CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEE
T ss_pred             HHHHHHHHHHHhCh----H-hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEE
Confidence            12222222111000    0 22222110      01234553   56999999866 5655555544   4567899998


Q ss_pred             ecC
Q 015752          327 TVT  329 (401)
Q Consensus       327 TTR  329 (401)
                      +=-
T Consensus       152 ~GD  154 (205)
T PF02562_consen  152 TGD  154 (205)
T ss_dssp             EE-
T ss_pred             ecC
Confidence            754

; GO: 0005524 ATP binding; PDB: 3B85_A.

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.93  E-value=0.013  Score=59.79  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=80.7

Q ss_pred             CccccccccHHHHHHHHh---c-----CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHH
Q 015752          186 LDISHFERGREELFDLLI---E-----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRIL  257 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~---~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~  257 (401)
                      .++.|.+..++.+.+...   .     +-...+-|.++|++|.|||.+|+.+.+  ...-.|   +-+..+      .  
T Consensus       228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~------~--  294 (489)
T CHL00195        228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVG------K--  294 (489)
T ss_pred             HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhH------H--
Confidence            677787665555543211   1     112346688999999999999999988  332222   111111      1  


Q ss_pred             HHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--C-------ch----hHHHHHhhCCCCCCCcEE
Q 015752          258 DDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--D-------SE----IWIDVEELLPDDENGSRV  324 (401)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~-------~~----~~~~l~~~l~~~~~gs~i  324 (401)
                        +.....+.         +...+...+...-...+++|.||++..  .       ..    ....+...+.....+--|
T Consensus       295 --l~~~~vGe---------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v  363 (489)
T CHL00195        295 --LFGGIVGE---------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV  363 (489)
T ss_pred             --hcccccCh---------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence              11111111         222333333322235789999999853  0       00    111222333332333445


Q ss_pred             EEecCChhHHh-hc-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          325 FITVTDPDLLA-SL-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       325 ivTTR~~~v~~-~~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      |.||.+..-.. .+ +-+..+.+ .++      .-  +.++-.++|..+...
T Consensus       364 IaTTN~~~~Ld~allR~GRFD~~i~v~------lP--~~~eR~~Il~~~l~~  407 (489)
T CHL00195        364 VATANNIDLLPLEILRKGRFDEIFFLD------LP--SLEEREKIFKIHLQK  407 (489)
T ss_pred             EEecCChhhCCHHHhCCCcCCeEEEeC------Cc--CHHHHHHHHHHHHhh
Confidence            56776654211 11 11233445 676      66  888889999887743

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=96.93  E-value=0.0058  Score=59.23  Aligned_cols=46  Identities=13%  Similarity=-0.010  Sum_probs=37.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus         6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~   51 (326)
T PRK11608          6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY   51 (326)
T ss_pred             CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            5789999999999888865323334577999999999999999975

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.93  E-value=0.0073  Score=54.79  Aligned_cols=117  Identities=14%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      ..++|.+..++.|++--..  .+....-|.+||..|.|||.|++.+.+  .+.+..-..+=|+-++-.            
T Consensus        60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl~------------  125 (287)
T COG2607          60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDLA------------  125 (287)
T ss_pred             HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHHh------------
Confidence            7799999888888664422  222344567999999999999999988  554444332221111101            


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC---CCCcEEEEecCCh
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD---ENGSRVFITVTDP  331 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~---~~gs~iivTTR~~  331 (401)
                                   +...+...|+.  ...||.|..||+.=  +...++.|...+..+   .+...++..|.+.
T Consensus       126 -------------~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR  183 (287)
T COG2607         126 -------------TLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR  183 (287)
T ss_pred             -------------hHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence                         11122222221  36899999999843  466788888887653   3445566655554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.92  E-value=0.008  Score=52.86  Aligned_cols=103  Identities=16%  Similarity=0.115  Sum_probs=59.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE------cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR------VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKS  283 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~  283 (401)
                      .+++|+|..|+|||||.+.+..-..   .....+++.      +.+...                     .+ .-+...-
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~---------------------LS-gGq~qrv   80 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID---------------------LS-GGELQRV   80 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC---------------------CC-HHHHHHH
Confidence            5899999999999999999986221   122222221      111111                     11 2223333


Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-++++|.--.  |......+...+...  ..+..||++|.+.......
T Consensus        81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~  138 (177)
T cd03222          81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL  138 (177)
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence            45555666778899999865  555444444444321  1235688888887665543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.88  E-value=0.0036  Score=60.13  Aligned_cols=92  Identities=13%  Similarity=0.055  Sum_probs=57.1

Q ss_pred             CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHH
Q 015752          205 GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKS  283 (401)
Q Consensus       205 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~  283 (401)
                      +=..-+++-|.|++|+||||||.++...  ....-..++|+.....++..     .+.+++.+.....-... +.++...
T Consensus        51 Glp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~  123 (321)
T TIGR02012        51 GLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE  123 (321)
T ss_pred             CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence            4345579999999999999999988762  33334567888777666543     34455433211100111 4455555


Q ss_pred             HHHHHcC-CceEEEEEeCCCC
Q 015752          284 ILRDYLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       284 ~l~~~L~-~kr~LlVlDdv~~  303 (401)
                      .+....+ +..-+||+|.+-.
T Consensus       124 ~~~~li~~~~~~lIVIDSv~a  144 (321)
T TIGR02012       124 IAETLVRSGAVDIIVVDSVAA  144 (321)
T ss_pred             HHHHHhhccCCcEEEEcchhh
Confidence            5555553 4677999999853

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.86  E-value=0.0043  Score=54.22  Aligned_cols=122  Identities=13%  Similarity=0.064  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccC----------cCHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIG----------EDYQ  279 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~----------~~~~  279 (401)
                      .+++|+|..|.|||||.+.++....   .....+++.-.......   ..+...++.-.....-+.          +.-+
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~  100 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM  100 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence            5899999999999999999986321   22333443210000000   011111110000000000          0122


Q ss_pred             HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      ...-.+...+..++-++++|+.-.  |......+...+..- ..|..||++|.+.......
T Consensus       101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~  161 (173)
T cd03230         101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL  161 (173)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence            233345566667888999999866  555555555444331 2367789999888766543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.86  E-value=0.0079  Score=55.52  Aligned_cols=127  Identities=17%  Similarity=0.227  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccC-----cc------ccc---CeEEEEEcCC------CCCH----------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNH-----VK------FYF---DCHAWVRVSL------DYDF----------------  253 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~vs~------~~~~----------------  253 (401)
                      ..++|+|+.|.|||||.+.+..-.+     +.      ..+   ..+.||.-..      +.++                
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~  110 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR  110 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence            6899999999999999999976211     10      001   1344442110      1111                


Q ss_pred             ------HHHHHHHHHHcCCCCCCccccCc-CHH-HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCc
Q 015752          254 ------RRILDDIIKSVIPPSRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGS  322 (401)
Q Consensus       254 ------~~~~~~i~~~l~~~~~~~~~~~~-~~~-~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs  322 (401)
                            .+...+.++..+........+.. +-. .-.-.|.+.|..++=|++||.--.  |...-..+...+.. ...|+
T Consensus       111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~  190 (254)
T COG1121         111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK  190 (254)
T ss_pred             cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence                  24455556665554333233444 333 344556677889999999998655  43333333333332 12288


Q ss_pred             EEEEecCChhHHhh
Q 015752          323 RVFITVTDPDLLAS  336 (401)
Q Consensus       323 ~iivTTR~~~v~~~  336 (401)
                      .||++|.+-+....
T Consensus       191 tIl~vtHDL~~v~~  204 (254)
T COG1121         191 TVLMVTHDLGLVMA  204 (254)
T ss_pred             EEEEEeCCcHHhHh
Confidence            89999998765544

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.85  E-value=0.0062  Score=53.22  Aligned_cols=122  Identities=16%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC--CCCHHHHHHHHHHHcCCCCCCc-----cccCcCHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL--DYDFRRILDDIIKSVIPPSRVS-----VIIGEDYQLKK  282 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~l~  282 (401)
                      .+++|+|..|+|||||.+.+..-..   .....+++.-..  ..........+ ..+.....-.     +..=+.-+...
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr  104 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR  104 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence            4889999999999999999986321   122333321100  11111111100 0000000000     00001112223


Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLA  335 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~  335 (401)
                      -.+...+..++-+++||+...  |......+...+... ..|..||++|.+.....
T Consensus       105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~  160 (173)
T cd03246         105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA  160 (173)
T ss_pred             HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            334444555667889999876  555545554444321 23667888888877654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR01817 nifA Nif-specific regulatory protein

Probab=96.85  E-value=0.0046  Score=64.13  Aligned_cols=47  Identities=15%  Similarity=-0.026  Sum_probs=38.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus       196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~  242 (534)
T TIGR01817       196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL  242 (534)
T ss_pred             CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence            68999999999998888653233445679999999999999999873

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK09354 recA recombinase A; Provisional

Probab=96.85  E-value=0.0045  Score=60.00  Aligned_cols=99  Identities=16%  Similarity=0.030  Sum_probs=61.2

Q ss_pred             HHHHHh-cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc
Q 015752          198 LFDLLI-EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE  276 (401)
Q Consensus       198 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~  276 (401)
                      |-..|. .+=..-+++-|.|++|+||||||.+++.  .....-..++|+.....++..     .+.+++.+....-....
T Consensus        48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp  120 (349)
T PRK09354         48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQP  120 (349)
T ss_pred             HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecC
Confidence            334444 3334457899999999999999998876  333344678899888777653     34555443211100111


Q ss_pred             -CHHHHHHHHHHHcC-CceEEEEEeCCCC
Q 015752          277 -DYQLKKSILRDYLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       277 -~~~~l~~~l~~~L~-~kr~LlVlDdv~~  303 (401)
                       +.++....+...++ ++.-|||+|.|-.
T Consensus       121 ~~~Eq~l~i~~~li~s~~~~lIVIDSvaa  149 (349)
T PRK09354        121 DTGEQALEIADTLVRSGAVDLIVVDSVAA  149 (349)
T ss_pred             CCHHHHHHHHHHHhhcCCCCEEEEeChhh
Confidence             44555555555553 4677999999853

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.85  E-value=0.012  Score=53.19  Aligned_cols=53  Identities=25%  Similarity=0.391  Sum_probs=33.2

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      +...+..++-+++||..-.  |......+...+..- ..|..||++|.+.+....+
T Consensus       143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~  198 (213)
T cd03235         143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY  198 (213)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            4444556778899999866  555555555544431 2466788888887665443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=96.84  E-value=0.004  Score=66.54  Aligned_cols=134  Identities=14%  Similarity=0.024  Sum_probs=72.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      ..++|....+..+.+.+..-.....-|.|+|..|+|||++|+.+++....  .-...+.++...-. ...+-..+.....
T Consensus       376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lfg~~~  452 (686)
T PRK15429        376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLFGHER  452 (686)
T ss_pred             cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhcCccc
Confidence            67899999998887777542233446779999999999999999873211  11122333333221 1111112221111


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVFITVTDP  331 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~iivTTR~~  331 (401)
                      +.      +..........+   -....=.|+||+|.. .......|...+..+.           .+.|||.||...
T Consensus       453 ~~------~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~  521 (686)
T PRK15429        453 GA------FTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD  521 (686)
T ss_pred             cc------ccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence            10      111111111111   112335699999987 5666677776664321           245888887653

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.84  E-value=0.012  Score=53.97  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=23.4

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          206 SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+..+++|.|+.|+|||||++.+..
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999998886

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=96.83  E-value=0.0068  Score=58.78  Aligned_cols=44  Identities=16%  Similarity=0.015  Sum_probs=33.8

Q ss_pred             cccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          188 ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       188 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+++
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~   44 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY   44 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence            46777777777777765323345578999999999999999976

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.83  E-value=0.008  Score=57.89  Aligned_cols=105  Identities=12%  Similarity=0.002  Sum_probs=60.9

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-  271 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-  271 (401)
                      .|-+.|..+=..-.++.|.|.+|+|||||+..++.......    .-..++|+.....+.... +.++++.++...... 
T Consensus        84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l  162 (316)
T TIGR02239        84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVL  162 (316)
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhh
Confidence            34444544434567999999999999999998875322211    123679999888777765 344555554432110 


Q ss_pred             cc---cCc-CHHH---HHHHHHHHcC-CceEEEEEeCCC
Q 015752          272 VI---IGE-DYQL---KKSILRDYLT-NKKYFIVLDDVF  302 (401)
Q Consensus       272 ~~---~~~-~~~~---l~~~l~~~L~-~kr~LlVlDdv~  302 (401)
                      ..   ... +.++   +...+...+. .+--|||+|.+-
T Consensus       163 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~  201 (316)
T TIGR02239       163 DNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSAT  201 (316)
T ss_pred             ccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence            00   011 2333   3333333343 456699999984

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.83  E-value=0.017  Score=52.34  Aligned_cols=55  Identities=15%  Similarity=0.156  Sum_probs=33.9

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...+-.++-+++||..-+  |....+.+...+.. ...|..||++|.+.......
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  203 (214)
T PRK13543        146 LALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV  203 (214)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh
Confidence            334444555667899999866  55555555444432 12356788888888766554

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.81  E-value=0.018  Score=56.57  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.++|+++|++|+||||++.+++.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Confidence            457999999999999999999876

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.80  E-value=0.0045  Score=59.53  Aligned_cols=91  Identities=15%  Similarity=0.065  Sum_probs=56.6

Q ss_pred             CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHH
Q 015752          205 GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKS  283 (401)
Q Consensus       205 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~  283 (401)
                      +=+.-+++-|.|++|+||||||.+++.  .....-..++|+.....++..     .+.+++.+....--... +.++...
T Consensus        51 Glp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~  123 (325)
T cd00983          51 GYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE  123 (325)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence            334457888999999999999999876  233334578899877766643     34444432111100111 4555556


Q ss_pred             HHHHHcC-CceEEEEEeCCC
Q 015752          284 ILRDYLT-NKKYFIVLDDVF  302 (401)
Q Consensus       284 ~l~~~L~-~kr~LlVlDdv~  302 (401)
                      .+...++ +.--|||+|.|-
T Consensus       124 i~~~li~s~~~~lIVIDSva  143 (325)
T cd00983         124 IADSLVRSGAVDLIVVDSVA  143 (325)
T ss_pred             HHHHHHhccCCCEEEEcchH
Confidence            6655554 466799999975

RecA couples ATP hydrolysis to DNA strand exchange.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=96.78  E-value=0.01  Score=60.40  Aligned_cols=170  Identities=11%  Similarity=0.044  Sum_probs=92.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .++||-+.....|...+..+. -..--...|+.|+||||+|+-++....-.+      | ....++..-...+.|...-.
T Consensus        16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~   87 (515)
T COG2812          16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL   87 (515)
T ss_pred             HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence            778999888888888886531 223345679999999999988865211111      1 11112222222222222100


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHHc----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhch
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDYL----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLE  338 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~L----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~  338 (401)
                      .+.-+.+..+. ..++....+.+..    +++-=..|+|.|+- ....|..|...+-.....-..|..|.+. .+...+-
T Consensus        88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl  167 (515)
T COG2812          88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL  167 (515)
T ss_pred             ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence            00000001111 3333333333322    34555889999976 7889999998887766666666655554 3433320


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                       ....+..+.      .|  +.++-...+...+.
T Consensus       168 -SRcq~f~fk------ri--~~~~I~~~L~~i~~  192 (515)
T COG2812         168 -SRCQRFDFK------RL--DLEEIAKHLAAILD  192 (515)
T ss_pred             -hcccccccc------CC--CHHHHHHHHHHHHH
Confidence             011222555      77  88877777777764

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.78  E-value=0.0035  Score=56.08  Aligned_cols=57  Identities=18%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCC
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPP  267 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~  267 (401)
                      +++|+++|+.|+||||.+.+++..  .+..-..+..++... .....+-++..++.++.+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp   58 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP   58 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred             CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence            468999999999999987777763  332333455666432 334455566666666643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.77  E-value=0.015  Score=52.76  Aligned_cols=83  Identities=23%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             HHHHHHHHHcCCCCCCc-cccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEe
Q 015752          255 RILDDIIKSVIPPSRVS-VIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFIT  327 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~-~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivT  327 (401)
                      .....+++.++...... ....+  .-++-.-.+.+.|..++-+|+-|.--.  |...=+.+...|...  ..|..||+.
T Consensus       120 ~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~V  199 (226)
T COG1136         120 RAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMV  199 (226)
T ss_pred             HHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            34555666655542211 11222  334445566677778888888888533  333334444444432  347889999


Q ss_pred             cCChhHHhhc
Q 015752          328 VTDPDLLASL  337 (401)
Q Consensus       328 TR~~~v~~~~  337 (401)
                      |.++.++..+
T Consensus       200 THd~~lA~~~  209 (226)
T COG1136         200 THDPELAKYA  209 (226)
T ss_pred             cCCHHHHHhC
Confidence            9999999876

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.76  E-value=0.0051  Score=56.55  Aligned_cols=100  Identities=13%  Similarity=0.050  Sum_probs=59.7

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------  271 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------  271 (401)
                      |-+.|..+=..-.++.|.|.+|+|||+|+.++.... .+ .=..++|++...++  ..+++.+ .+++......      
T Consensus        14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l   88 (234)
T PRK06067         14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYL   88 (234)
T ss_pred             HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCc
Confidence            334443443456789999999999999999986421 22 23578888886543  4444443 3333211100      


Q ss_pred             ---------cccCc-CHHHHHHHHHHHcCC-ceEEEEEeCCC
Q 015752          272 ---------VIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVF  302 (401)
Q Consensus       272 ---------~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~  302 (401)
                               ..... +.+.+...+.+.+.. +.-++|+|.+-
T Consensus        89 ~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t  130 (234)
T PRK06067         89 RIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT  130 (234)
T ss_pred             eEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence                     00111 446677777777654 56689999975

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=96.76  E-value=0.0012  Score=57.55  Aligned_cols=44  Identities=18%  Similarity=0.046  Sum_probs=32.2

Q ss_pred             cccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          188 ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       188 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++|.+..+.++.+.+..-.....-|.|+|..|.||+.+|+.+++
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~   44 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN   44 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence            47888888888887765222234566999999999999999988

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK07667 uridine kinase; Provisional

Probab=96.75  E-value=0.0021  Score=57.32  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.|.+.+........+|+|.|.+|+||||+|+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~   39 (193)
T PRK07667          3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE   39 (193)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567777766555668999999999999999999987

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.75  E-value=0.013  Score=52.83  Aligned_cols=53  Identities=15%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      +...+..++-++++|.--.  |......+...+... ..|..||++|.+.......
T Consensus       139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~  194 (210)
T cd03269         139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL  194 (210)
T ss_pred             HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence            4455556677899999866  555545554444321 2366789999988765543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.75  E-value=0.014  Score=54.28  Aligned_cols=128  Identities=17%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--ccC--eEEEEEcC----CCCCHHHHH--------------HHHHHHcCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YFD--CHAWVRVS----LDYDFRRIL--------------DDIIKSVIP  266 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~--~~~wv~vs----~~~~~~~~~--------------~~i~~~l~~  266 (401)
                      .+++|+|..|+|||||++.+....... .  .++  .+.++.-.    ...++.+.+              .++++.++.
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l  105 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI  105 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence            589999999999999999997642211 1  111  12222110    011222222              223333332


Q ss_pred             CCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          267 PSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       267 ~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      ..........  .-+...-.+...|..++-+++||.--.  |...-..+...+..-  ..+..||++|.+...+...
T Consensus       106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~  182 (246)
T cd03237         106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL  182 (246)
T ss_pred             HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            2110011222  222333345556667888999999866  555445454444331  2366788899887766543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.72  E-value=0.0083  Score=62.04  Aligned_cols=44  Identities=27%  Similarity=0.147  Sum_probs=36.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..++.+...+...  ...-+.|+|.+|+|||++|+.+++
T Consensus        65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~  108 (531)
T TIGR02902        65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLE  108 (531)
T ss_pred             HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            67999999999998877543  234567899999999999999976

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.72  E-value=0.0016  Score=66.47  Aligned_cols=47  Identities=13%  Similarity=0.111  Sum_probs=40.4

Q ss_pred             CCccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          185 RLDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       185 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.+++|.++.+++|++.|..    -+..-+++.++|++|+||||||+.+.+
T Consensus        75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence            37899999999999999943    244567999999999999999999986

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.035  Score=52.03  Aligned_cols=170  Identities=22%  Similarity=0.261  Sum_probs=99.5

Q ss_pred             CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      +++-|.+...+.|.+...-          .....+-|.++|++|.||+.||+.|+-.  ...     -|+++|..     
T Consensus       133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnS-----TFFSvSSS-----  200 (439)
T KOG0739|consen  133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANS-----TFFSVSSS-----  200 (439)
T ss_pred             hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCC-----ceEEeehH-----
Confidence            6778888888888776542          1234678999999999999999999872  222     23445443     


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC-CceEEEEEeCCCC-C-------chhHHHHHhh-------CCCCC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD-D-------SEIWIDVEEL-------LPDDE  319 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~-~-------~~~~~~l~~~-------l~~~~  319 (401)
                         +++....+          ..+.+...|.+.-+ .|+.+|.+|.+.. .       .+.-..|..-       ..++.
T Consensus       201 ---DLvSKWmG----------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~  267 (439)
T KOG0739|consen  201 ---DLVSKWMG----------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN  267 (439)
T ss_pred             ---HHHHHHhc----------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence               23333333          34566666666664 6899999999854 1       1222223222       12233


Q ss_pred             CCcEEEEecCChhHHhhc-h--hCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHH
Q 015752          320 NGSRVFITVTDPDLLASL-E--MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKF  392 (401)
Q Consensus       320 ~gs~iivTTR~~~v~~~~-~--~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i  392 (401)
                      .|.-|+=.|..+-+.... +  .....+|+|.          ....-..+|.-++|+.+.  ....+.++.+|++-
T Consensus       268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLP----------e~~AR~~MF~lhlG~tp~--~LT~~d~~eL~~kT  331 (439)
T KOG0739|consen  268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLP----------EAHARARMFKLHLGDTPH--VLTEQDFKELARKT  331 (439)
T ss_pred             CceEEEecCCCchhHHHHHHHHhhcceeccCC----------cHHHhhhhheeccCCCcc--ccchhhHHHHHhhc
Confidence            455556677776554333 1  1112222333          445555677777776543  23356677777764

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.72  E-value=0.04  Score=51.78  Aligned_cols=134  Identities=15%  Similarity=0.057  Sum_probs=71.6

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc--
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS--  271 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--  271 (401)
                      ..+.++..|... ....-++|+|+.|+|||||.+.+..  .+. .....+++.- ......+-..++......-....  
T Consensus        97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~  171 (270)
T TIGR02858        97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVG  171 (270)
T ss_pred             cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECC-EEeecchhHHHHHHHhccccccccc
Confidence            455566666542 3456889999999999999999987  332 2233333321 00000011122322221111000  


Q ss_pred             cccCc-CHHHHHHHHHHHc-CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          272 VIIGE-DYQLKKSILRDYL-TNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       272 ~~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      ...+- +...-...+...+ .-.+-++++|.+-. .+.+..+...+.   .|..+|+||.+..+...
T Consensus       172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~  234 (270)
T TIGR02858       172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGRDVEDL  234 (270)
T ss_pred             ccccccccchHHHHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence            00010 1111111222222 25788999999977 766777766653   47789999998777544

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.71  E-value=0.006  Score=53.57  Aligned_cols=120  Identities=17%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE---cCCCC-CHHHHHHHHHHHcCC--CCCCc-c------cc--
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR---VSLDY-DFRRILDDIIKSVIP--PSRVS-V------II--  274 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~-~~~~~~~~i~~~l~~--~~~~~-~------~~--  274 (401)
                      .+++|+|..|+|||||++.+..-..   .....+.+.   ++... ....    ....+..  +.... .      ..  
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l~~   99 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENIAL   99 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHheee
Confidence            5899999999999999999986221   123333331   11100 0111    1111110  00000 0      00  


Q ss_pred             -CcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CC-CcEEEEecCChhHHhh
Q 015752          275 -GEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-EN-GSRVFITVTDPDLLAS  336 (401)
Q Consensus       275 -~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~-gs~iivTTR~~~v~~~  336 (401)
                       -+.-+...-.+...+..++=++++|+--.  |......+...+... .. |..||++|.+......
T Consensus       100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~  166 (178)
T cd03229         100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR  166 (178)
T ss_pred             cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence             00112333344555666778899999866  555555555544432 22 5678888888766554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.0013  Score=56.02  Aligned_cols=31  Identities=13%  Similarity=0.161  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccc-cCe
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFY-FDC  241 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~  241 (401)
                      ..-|+|.||+|+||||+++++.+  .++.. |..
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv   36 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKV   36 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence            35688999999999999999987  44433 553

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=96.70  E-value=0.0058  Score=57.17  Aligned_cols=102  Identities=19%  Similarity=0.188  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH----hHHHhchhhcCCCcccchhHHHHHHHHHHHHHHhHHHHHh
Q 015752           44 EIIVTTLLGKYEVDMAR--HLFQLLREDFDDSNISL----PFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAID  117 (401)
Q Consensus        44 ~~~v~~~l~kl~~~l~~--~~~~~~~~~l~~L~~el----~~L~~ae~~~~~~~~~~~~~v~~Wl~~lr~~a~d~eD~lD  117 (401)
                      .|.|.+++++|..+...  ..+.-++.+++-++.+|    +||+.+.+...+.++    ..+.+..++...||++|.++|
T Consensus       295 LGyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~----~~ed~a~~ii~kAyevEYVVD  370 (402)
T PF12061_consen  295 LGYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHD----TNEDCATQIIRKAYEVEYVVD  370 (402)
T ss_pred             ccHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhh----hhhhHHHHHHHHHhheeeeee
Confidence            47899999999999888  77888999999999999    999998555323454    489999999999999999999


Q ss_pred             hhhhhhhhccCccchhcccchhhhHHHHHHHHHHHHHHhhc
Q 015752          118 TYFTNIMQQQNSEAESESSTNMALLVGLHTKIIDIRSRMQQ  158 (401)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~l~~~l~~  158 (401)
                      -+......         .|....+...+...|+.+++++++
T Consensus       371 aCi~k~~P---------~Wcl~~WL~dIieei~~ik~~i~e  402 (402)
T PF12061_consen  371 ACISKSVP---------HWCLERWLLDIIEEITCIKAKIQE  402 (402)
T ss_pred             hhhcCCCc---------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98654332         234445667888888888887753

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>PRK13695 putative NTPase; Provisional

Probab=96.69  E-value=0.0017  Score=56.88  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -++|+|.+|+|||||++.+++.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998874

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.69  E-value=0.013  Score=54.55  Aligned_cols=127  Identities=15%  Similarity=0.157  Sum_probs=64.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC---eEEEEEcCCCC------CHH-----------HHHHHHHHHcCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD---CHAWVRVSLDY------DFR-----------RILDDIIKSVIP  266 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~---~~~wv~vs~~~------~~~-----------~~~~~i~~~l~~  266 (401)
                      .+++|+|..|+|||||++.++.-.... +.  ++   .+.++.-....      ++.           .-...+++.++.
T Consensus        31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl  110 (251)
T PRK09544         31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA  110 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence            589999999999999999998632111 10  11   12222111000      111           112333444433


Q ss_pred             CCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          267 PSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       267 ~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      ..........  .-+...-.+...+..++-+++||+.-.  |...-..+...+..-  ..|..||++|.+.+....
T Consensus       111 ~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~  186 (251)
T PRK09544        111 GHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMA  186 (251)
T ss_pred             hHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence            2110011122  122223334445556777999999866  554445544444321  125668888888776544

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.68  E-value=0.013  Score=53.36  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+..++-++++|+--.  |......+...+... ..|..||++|.+.+....
T Consensus       122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~  178 (223)
T TIGR03771       122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA  178 (223)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            355556667788999999866  555555555544432 236678888888775443

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.68  E-value=0.02  Score=51.65  Aligned_cols=54  Identities=26%  Similarity=0.321  Sum_probs=33.6

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...|..++-+++||.--+  |......+...+..- ..|..||++|.+.......
T Consensus       144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~  200 (211)
T cd03225         144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL  200 (211)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            34444555667999999866  555555555444321 2366788888887765543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.68  E-value=0.012  Score=55.25  Aligned_cols=97  Identities=14%  Similarity=-0.038  Sum_probs=61.8

Q ss_pred             cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHH
Q 015752          204 EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKK  282 (401)
Q Consensus       204 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~  282 (401)
                      .+=+.-+++=|+|+.|+||||+|.+++-  .....-..++|+.....+++..+.+-....+..-.- .+.... ....++
T Consensus        55 GGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v-~~~~~~e~q~~i~  131 (279)
T COG0468          55 GGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLV-SQPDTGEQQLEIA  131 (279)
T ss_pred             CCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeE-ecCCCHHHHHHHH
Confidence            3334567899999999999999999876  334444489999999999987764333331111100 001111 444455


Q ss_pred             HHHHHHcCCceEEEEEeCCCC
Q 015752          283 SILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~  303 (401)
                      ..+.+....+--|+|+|.+-.
T Consensus       132 ~~~~~~~~~~i~LvVVDSvaa  152 (279)
T COG0468         132 EKLARSGAEKIDLLVVDSVAA  152 (279)
T ss_pred             HHHHHhccCCCCEEEEecCcc
Confidence            555555555567999999854

>PTZ00035 Rad51 protein; Provisional

Probab=96.68  E-value=0.015  Score=56.60  Aligned_cols=106  Identities=11%  Similarity=0.020  Sum_probs=60.9

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc----cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK----FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-  271 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-  271 (401)
                      .|-+.|..+=..-.++.|+|.+|+|||||+..++-.....    ..-..++|+.....++...+ .++++.++...... 
T Consensus       106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l  184 (337)
T PTZ00035        106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVL  184 (337)
T ss_pred             HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHh
Confidence            3444454443456789999999999999999887532221    11235679988777777663 44555554432110 


Q ss_pred             cc---cCc-CHHHHHHHH---HHHc-CCceEEEEEeCCCC
Q 015752          272 VI---IGE-DYQLKKSIL---RDYL-TNKKYFIVLDDVFD  303 (401)
Q Consensus       272 ~~---~~~-~~~~l~~~l---~~~L-~~kr~LlVlDdv~~  303 (401)
                      .+   ... +.+++...+   ...+ .++--|||+|.+..
T Consensus       185 ~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita  224 (337)
T PTZ00035        185 DNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA  224 (337)
T ss_pred             hceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence            00   011 333333333   3333 34556999999853

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.67  E-value=0.013  Score=56.43  Aligned_cols=105  Identities=12%  Similarity=0.096  Sum_probs=61.0

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc--
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS--  271 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--  271 (401)
                      +-+.|..+=..-.++-|+|.+|+|||+++.+++.......    .=..++||.....++...+. +++..++......  
T Consensus        84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~  162 (310)
T TIGR02236        84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLK  162 (310)
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhh
Confidence            3344433333457889999999999999999876432211    11379999998888877654 4455554331100  


Q ss_pred             -----cccCc-CHHHHHHHHHHHcCC---ceEEEEEeCCCC
Q 015752          272 -----VIIGE-DYQLKKSILRDYLTN---KKYFIVLDDVFD  303 (401)
Q Consensus       272 -----~~~~~-~~~~l~~~l~~~L~~---kr~LlVlDdv~~  303 (401)
                           ..... ....+.+.+.+.+..   +.-+||+|.+-.
T Consensus       163 ~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa  203 (310)
T TIGR02236       163 NIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS  203 (310)
T ss_pred             ceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence                 00111 112234445555543   245999999854

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.66  E-value=0.012  Score=60.26  Aligned_cols=57  Identities=21%  Similarity=0.332  Sum_probs=42.8

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR  246 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  246 (401)
                      .+++--.+-++++..||..   +....+++.+.|++|+||||.++.+++.    -.|+.+-|.+
T Consensus        19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n   78 (519)
T PF03215_consen   19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN   78 (519)
T ss_pred             HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence            4455556678889999975   2334579999999999999999999872    2466777865

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.66  E-value=0.013  Score=55.13  Aligned_cols=54  Identities=17%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...|..++-++++|+.-.  |......+...+..- ..|..||++|.+.+.....
T Consensus       152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~  208 (272)
T PRK15056        152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF  208 (272)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            34444555677999999876  555555555544321 2356688888887654443

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=96.64  E-value=0.092  Score=50.57  Aligned_cols=71  Identities=13%  Similarity=0.255  Sum_probs=47.2

Q ss_pred             CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752          291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI  368 (401)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~  368 (401)
                      +++=++|||++.. +...-..|...+-+...++.+|++|.+. .+...+. .....+.+.      ++  +.+++.+.+.
T Consensus       112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr-SRCq~i~~~------~~--~~~~~~~~L~  182 (319)
T PRK08769        112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR-SRCQRLEFK------LP--PAHEALAWLL  182 (319)
T ss_pred             CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH-hhheEeeCC------Cc--CHHHHHHHHH
Confidence            5667899999977 6666677877777666677777776654 4444431 112233777      88  8888887776


Q ss_pred             Hh
Q 015752          369 LH  370 (401)
Q Consensus       369 ~~  370 (401)
                      +.
T Consensus       183 ~~  184 (319)
T PRK08769        183 AQ  184 (319)
T ss_pred             Hc
Confidence            54

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.64  E-value=0.024  Score=56.91  Aligned_cols=24  Identities=21%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.++|.+|+||||++.+++.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999998876

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.63  E-value=0.018  Score=50.51  Aligned_cols=124  Identities=15%  Similarity=0.257  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE---cC------------------CC------------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR---VS------------------LD------------------  250 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs------------------~~------------------  250 (401)
                      ..+.|+|++|.|||||.+.+|...+..   ...+|+.   ++                  |+                  
T Consensus        29 ef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~  105 (223)
T COG2884          29 EFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR  105 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence            478899999999999999999754322   1223321   00                  00                  


Q ss_pred             ------CCHHHHHHHHHHHcCCCCCCccccC--cCHHHHHHHHHHHcCCceEEEEEeCCCC--C-chhHHHHHhhCC-CC
Q 015752          251 ------YDFRRILDDIIKSVIPPSRVSVIIG--EDYQLKKSILRDYLTNKKYFIVLDDVFD--D-SEIWIDVEELLP-DD  318 (401)
Q Consensus       251 ------~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~-~~~~~~l~~~l~-~~  318 (401)
                            ....+-..+.++..+.......-..  +.-++-.-.|.+.+-+++-+|+-|.---  | .-.|+-+ ..|. -+
T Consensus       106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeein  184 (223)
T COG2884         106 VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEIN  184 (223)
T ss_pred             ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHh
Confidence                  0122233334444443322110111  1333444455666667888888886533  3 3445444 3333 35


Q ss_pred             CCCcEEEEecCChhHHhhc
Q 015752          319 ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       319 ~~gs~iivTTR~~~v~~~~  337 (401)
                      ..|+.||++|.+.++...+
T Consensus       185 r~GtTVl~ATHd~~lv~~~  203 (223)
T COG2884         185 RLGTTVLMATHDLELVNRM  203 (223)
T ss_pred             hcCcEEEEEeccHHHHHhc
Confidence            6799999999999998877

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.62  E-value=0.0018  Score=60.02  Aligned_cols=46  Identities=22%  Similarity=0.216  Sum_probs=39.2

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|-++.++++.-.+..   .+..+.-+.++|++|.||||||.-+++
T Consensus        26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~   74 (332)
T COG2255          26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN   74 (332)
T ss_pred             HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence            8899998888888766654   345677899999999999999999998

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.62  E-value=0.016  Score=53.13  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...+..++-+++||..-.  |...-..+...+..-  ..|..||++|.+.+.....
T Consensus       149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~  207 (233)
T cd03258         149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRI  207 (233)
T ss_pred             HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            334444556667999999866  555445555554432  2367788888888765443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=96.62  E-value=0.019  Score=52.33  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+-..+-++++|+.-.  |....+.+...+..- ..|..||++|.+.......
T Consensus       134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~  190 (223)
T TIGR03740       134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL  190 (223)
T ss_pred             HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence            34445556778899999866  555555555444321 2366799999988766543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.014  Score=60.74  Aligned_cols=102  Identities=15%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~  261 (401)
                      .+-+|.++..++|++.|.-    +.-+-.+++++|+||+|||.|++.++.  .....|   +-++++.--|..++=    
T Consensus       323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIR----  393 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIR----  393 (782)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhc----
Confidence            5678999999999999853    233447999999999999999999998  565555   233444433333221    


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~  303 (401)
                       .....     =+.+-...+.+.+++. +.+.-|++||.+..
T Consensus       394 -GHRRT-----YIGamPGrIiQ~mkka-~~~NPv~LLDEIDK  428 (782)
T COG0466         394 -GHRRT-----YIGAMPGKIIQGMKKA-GVKNPVFLLDEIDK  428 (782)
T ss_pred             -ccccc-----ccccCChHHHHHHHHh-CCcCCeEEeechhh
Confidence             00000     0111122333333332 45778899999865

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.61  E-value=0.022  Score=51.74  Aligned_cols=54  Identities=19%  Similarity=0.209  Sum_probs=34.4

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-++++|..-.  |....+.+...+..-..+..||++|.+......+
T Consensus       143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~  198 (220)
T cd03263         143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL  198 (220)
T ss_pred             HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence            34445556778999999866  5555555554444322246688888888766543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.61  E-value=0.0063  Score=54.93  Aligned_cols=54  Identities=17%  Similarity=0.183  Sum_probs=33.1

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+..++-++++|+--.  |...-..+...+.....+..||++|.+......
T Consensus       139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~  194 (211)
T cd03264         139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES  194 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence            344455566778999999766  544444444444332223568888888776544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.60  E-value=0.0095  Score=53.12  Aligned_cols=81  Identities=15%  Similarity=0.022  Sum_probs=42.8

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCccc-ccC---eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHH
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKF-YFD---CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSIL  285 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l  285 (401)
                      ||+|.|.+|+||||+|+.+..  .+.. .+.   ....++...-+....... .-.. ............ +.+.+...|
T Consensus         1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~-~~~~~~~~~p~a~d~~~l~~~l   76 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRD-RKGR-GENRYNFDHPDAFDFDLLKEDL   76 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHH-HHHH-CTTTSSTTSGGGBSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhh-Hhhc-cccccCCCCccccCHHHHHHHH
Confidence            699999999999999999987  3332 122   133333322222222111 1111 111100012334 777888888


Q ss_pred             HHHcCCceEE
Q 015752          286 RDYLTNKKYF  295 (401)
Q Consensus       286 ~~~L~~kr~L  295 (401)
                      ....+++..-
T Consensus        77 ~~L~~g~~i~   86 (194)
T PF00485_consen   77 KALKNGGSIE   86 (194)
T ss_dssp             HHHHTTSCEE
T ss_pred             HHHhCCCccc
Confidence            7776666543

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.60  E-value=0.01  Score=54.94  Aligned_cols=126  Identities=14%  Similarity=0.100  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-----CCCHHHHHHHHHHHcCCCCCCccc-cCc-C-HHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-----DYDFRRILDDIIKSVIPPSRVSVI-IGE-D-YQL  280 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~~~~-~~~-~-~~~  280 (401)
                      -.+++|+|..|+|||||++.+..  -. ..-.+.+++.-.+     .....+-..+++...+........ ... + -+.
T Consensus        39 ge~~glVGESG~GKSTlgr~i~~--L~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr  115 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLILG--LE-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR  115 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHHc--Cc-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence            45899999999999999999986  22 2223333333111     222344566777776644221111 111 2 222


Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.-.+.+.|.-++-|+|.|..-+  |...-.++...+.+  ...|...+..|.+-.+...+
T Consensus       116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i  176 (268)
T COG4608         116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI  176 (268)
T ss_pred             hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence            33445667788999999999765  43322344333332  23466678888888888777

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.59  E-value=0.024  Score=52.12  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=34.0

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA  335 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~  335 (401)
                      .+...+..++-+++||+.-.  |....+.+...+..-  ..|..||++|.+.+...
T Consensus       142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  197 (236)
T TIGR03864       142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE  197 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence            34555566778899999866  555555555554432  23667888888877654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.59  E-value=0.021  Score=50.17  Aligned_cols=24  Identities=13%  Similarity=0.145  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..+|+|.|++|+||||+++.+..
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999986

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.008  Score=54.24  Aligned_cols=64  Identities=22%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhchhCCCcce
Q 015752          279 QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASLEMENGEKI  345 (401)
Q Consensus       279 ~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~~~  345 (401)
                      +.-...+.+.+--++-|.|||...+  |.++.+.+...+.. ...|+-+||.|..+.++..+   .++.+
T Consensus       149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i---~pD~v  215 (251)
T COG0396         149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI---KPDKV  215 (251)
T ss_pred             hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc---CCCEE
Confidence            3344455555556778999999988  65555555433322 23467788888999999888   55554

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.58  E-value=0.018  Score=55.92  Aligned_cols=104  Identities=11%  Similarity=0.049  Sum_probs=62.6

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V  272 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~  272 (401)
                      |-+.|..+=..-.++-|.|.+|+|||+|+..++-......    .-..++|+.....+.+..+ .+|++.++...... +
T Consensus       112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~  190 (342)
T PLN03186        112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLE  190 (342)
T ss_pred             HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhcc
Confidence            4444444434567888999999999999988874322211    1137999999999888765 45666665442211 0


Q ss_pred             c---cCc-CHHHHHHHH---HHHc-CCceEEEEEeCCC
Q 015752          273 I---IGE-DYQLKKSIL---RDYL-TNKKYFIVLDDVF  302 (401)
Q Consensus       273 ~---~~~-~~~~l~~~l---~~~L-~~kr~LlVlDdv~  302 (401)
                      .   ... +.+.+...+   ...+ ..+--|||+|.+-
T Consensus       191 ~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~  228 (342)
T PLN03186        191 NVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSAT  228 (342)
T ss_pred             ceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence            1   111 333333333   2333 3466699999984

>PRK06762 hypothetical protein; Provisional

Probab=96.58  E-value=0.0087  Score=51.77  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||+|+.+.+
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~   24 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQE   24 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6889999999999999999987

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.58  E-value=0.0075  Score=51.69  Aligned_cols=116  Identities=18%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC--CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD--YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      .+++|+|..|.|||||.+.+..-  .. .....+++.-...  .....    ....+....    ..+ .-+...-.+..
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~--~~-~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~----qlS-~G~~~r~~l~~   93 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGL--LK-PTSGEILIDGKDIAKLPLEE----LRRRIGYVP----QLS-GGQRQRVALAR   93 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEcccCCHHH----HHhceEEEe----eCC-HHHHHHHHHHH
Confidence            58899999999999999999873  22 2344454432111  11111    111111100    011 22233333555


Q ss_pred             HcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          288 YLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       288 ~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+-++++|..-.  |......+...+... ..+..+|++|.+.......
T Consensus        94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~  146 (157)
T cd00267          94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA  146 (157)
T ss_pred             HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            5556678899999876  555555555444321 2256788888887766553

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.57  E-value=0.011  Score=52.86  Aligned_cols=55  Identities=22%  Similarity=0.224  Sum_probs=34.9

Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      .-.+...+...+-++++|+.-.  |......+...+..- ..+..||++|.+......
T Consensus       112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~  169 (200)
T cd03217         112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY  169 (200)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            3345555666778999999866  555555554444321 236678888888876653

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.57  E-value=0.021  Score=51.54  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++-+++||.--.  |......+...+..-  ..|..||++|.+......
T Consensus       139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~  196 (213)
T cd03259         139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA  196 (213)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence            334455566778999999866  555555555555432  236678888888765444

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.57  E-value=0.008  Score=54.23  Aligned_cols=54  Identities=24%  Similarity=0.368  Sum_probs=34.7

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||+--.  |....+.+...+..-  ..|..||++|.+.......
T Consensus       138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~  195 (211)
T cd03298         138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL  195 (211)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhh
Confidence            34444456678899999866  666666666555432  2366788888887765543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.56  E-value=0.025  Score=53.30  Aligned_cols=39  Identities=18%  Similarity=0.067  Sum_probs=27.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV  247 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v  247 (401)
                      .+.+++.++|++|+||||++.+++.  .....-..+.++..
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~  108 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAG  108 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeC
Confidence            3568999999999999999988876  33332234555543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK00625 shikimate kinase; Provisional

Probab=96.56  E-value=0.016  Score=50.82  Aligned_cols=21  Identities=14%  Similarity=0.113  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|.++||+|+||||+++.+.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>PRK14974 cell division protein FtsY; Provisional

Probab=96.56  E-value=0.021  Score=55.29  Aligned_cols=55  Identities=15%  Similarity=0.042  Sum_probs=33.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCccc-ccCeEEEEEcCCCCC--HHHHHHHHHHHcCC
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFDCHAWVRVSLDYD--FRRILDDIIKSVIP  266 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~  266 (401)
                      +..+|.++|++|+||||++.+++.  .... .+ .++.+. ...+.  ...-+......++.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv  196 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGV  196 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence            468999999999999998887776  2322 23 233333 22222  23345556666654

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.095  Score=50.43  Aligned_cols=159  Identities=18%  Similarity=0.254  Sum_probs=92.1

Q ss_pred             CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++-|-++.+++|.+.+.-.           =..++=|.++|++|.|||-||+.+++  +....|     +.+..+    
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----  219 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----  219 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----
Confidence            67778899998888876431           13456678999999999999999999  555444     333221    


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCC-ceEEEEEeCCCC------C------c---hhHHHHHhhCCC-
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTN-KKYFIVLDDVFD------D------S---EIWIDVEELLPD-  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~------~------~---~~~~~l~~~l~~-  317 (401)
                          ++....-+          +...+...+.+.-+. .+..|.+|.+..      |      .   ...-+|...+.. 
T Consensus       220 ----ElVqKYiG----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF  285 (406)
T COG1222         220 ----ELVQKYIG----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF  285 (406)
T ss_pred             ----HHHHHHhc----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence                22222222          233455555555544 688999999853      0      1   112234333332 


Q ss_pred             -CCCCcEEEEecCChhHHhhchhCCCcce--ecccccCCCCCCCChHHHHHHHHHhhCCCCC
Q 015752          318 -DENGSRVFITVTDPDLLASLEMENGEKI--RLDSVLFGGPLIRLKHEAWQFFILHYGSMPL  376 (401)
Q Consensus       318 -~~~gs~iivTTR~~~v~~~~~~~~~~~~--~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~  376 (401)
                       ....-|||..|...++..-.-. .+..+  .++   |  || .+.+.-.++|.-++.....
T Consensus       286 D~~~nvKVI~ATNR~D~LDPALL-RPGR~DRkIE---f--pl-Pd~~gR~~Il~IHtrkM~l  340 (406)
T COG1222         286 DPRGNVKVIMATNRPDILDPALL-RPGRFDRKIE---F--PL-PDEEGRAEILKIHTRKMNL  340 (406)
T ss_pred             CCCCCeEEEEecCCccccChhhc-CCCcccceee---c--CC-CCHHHHHHHHHHHhhhccC
Confidence             2346789998887765432200 22333  233   2  34 1556666777777755443

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.55  E-value=0.036  Score=50.15  Aligned_cols=55  Identities=18%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++-+++||.--.  |......+...+..- ..|..||++|.+.+.....
T Consensus       147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~  204 (216)
T TIGR00960       147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY  204 (216)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            344555566778999999866  555445544444321 2356788888887765543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.55  E-value=0.017  Score=52.04  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=34.7

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||+--.  |......+...+... ..|..||++|.+.......
T Consensus       136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~  192 (208)
T cd03268         136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV  192 (208)
T ss_pred             HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence            34445556677999999866  555555555544432 2466788899888766543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.55  E-value=0.016  Score=51.44  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPD  332 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~  332 (401)
                      .+...|...+-+++||+--.  |....+.+...+..- ..|..||++|.+.+
T Consensus       137 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       137 AIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence            34444556677999999866  555555555444331 23667888887643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.55  E-value=0.0099  Score=56.38  Aligned_cols=87  Identities=17%  Similarity=0.136  Sum_probs=45.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      ...+++|+|++|+||||++.+++.....++.-..+..++... .....+.+......++.+..    ...+...+...+.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l~  268 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKALD  268 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHHH
Confidence            357999999999999999988876322221112344555432 11223333344444333211    0114444544444


Q ss_pred             HHcCCceEEEEEeC
Q 015752          287 DYLTNKKYFIVLDD  300 (401)
Q Consensus       287 ~~L~~kr~LlVlDd  300 (401)
                      .. .+ .=+|++|.
T Consensus       269 ~~-~~-~d~vliDt  280 (282)
T TIGR03499       269 RL-RD-KDLILIDT  280 (282)
T ss_pred             Hc-cC-CCEEEEeC
Confidence            33 33 35777775

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=96.55  E-value=0.031  Score=53.88  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=31.9

Q ss_pred             ccHHHHHHHHhcCC-CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          193 RGREELFDLLIEGS-SGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       193 ~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-.+.|.+.|...+ ....+|+|.|.=|+|||++.+.+.+.
T Consensus         3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~   43 (325)
T PF07693_consen    3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE   43 (325)
T ss_pred             HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34566777776543 67889999999999999999999873

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=96.55  E-value=0.077  Score=55.13  Aligned_cols=133  Identities=14%  Similarity=0.044  Sum_probs=84.2

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccC---cc---cccCeEEEEEcCCCCCHHHH
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNH---VK---FYFDCHAWVRVSLDYDFRRI  256 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~---~~F~~~~wv~vs~~~~~~~~  256 (401)
                      ..+-+|+.+..+|-..+..   +......+=|.|-+|.|||..+..|.+..+   -+   ..|+ .+.|+.-.-....++
T Consensus       396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~  474 (767)
T KOG1514|consen  396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI  474 (767)
T ss_pred             ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence            3456899999999888754   223334778999999999999999987422   11   2233 234444444568899


Q ss_pred             HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC-----CceEEEEEeCCCC-CchhHHHHHhhCCCC-CCCcEEEE
Q 015752          257 LDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT-----NKKYFIVLDDVFD-DSEIWIDVEELLPDD-ENGSRVFI  326 (401)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs~iiv  326 (401)
                      +..|...+.+...       ........|..++.     .+.++|++|++.. -...-+-+...|.+. .++|+++|
T Consensus       475 Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv  544 (767)
T KOG1514|consen  475 YEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV  544 (767)
T ss_pred             HHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence            9999999988743       34444555555553     3578888888744 111113444555553 45677654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.54  E-value=0.029  Score=52.36  Aligned_cols=54  Identities=20%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...|..++-+++||.--.  |...-..+...+..-  ..|..||++|.+......+
T Consensus       138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~  195 (255)
T PRK11248        138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFM  195 (255)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444556778999999866  555545555444331  2366788888887765544

>TIGR00959 ffh signal recognition particle protein

Probab=96.54  E-value=0.029  Score=56.16  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.++.++|.+|+||||.+.+++.
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~  121 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAY  121 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999877765

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.53  E-value=0.017  Score=50.34  Aligned_cols=21  Identities=29%  Similarity=0.265  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++.+.|++|+||||++..++.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~   22 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLAL   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999998876

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.53  E-value=0.0022  Score=57.42  Aligned_cols=115  Identities=11%  Similarity=0.084  Sum_probs=56.7

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCcccc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVII  274 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~  274 (401)
                      ..+.+..+...  +-+++.|.|.+|.||||+++.+..  .+... ...+.+......    ....+.+..+....     
T Consensus         6 Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~--~~~~~-g~~v~~~apT~~----Aa~~L~~~~~~~a~-----   71 (196)
T PF13604_consen    6 QREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAE--ALEAA-GKRVIGLAPTNK----AAKELREKTGIEAQ-----   71 (196)
T ss_dssp             HHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHH--HHHHT-T--EEEEESSHH----HHHHHHHHHTS-EE-----
T ss_pred             HHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHH--HHHhC-CCeEEEECCcHH----HHHHHHHhhCcchh-----
Confidence            34444545432  336788899999999999988876  33322 122333222221    12223333222100     


Q ss_pred             CcCHHHHHHHHHHHc------CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEe
Q 015752          275 GEDYQLKKSILRDYL------TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFIT  327 (401)
Q Consensus       275 ~~~~~~l~~~l~~~L------~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivT  327 (401)
                        +...........-      ..++-+||+|+..- +...+..|....+.  .|+++|+.
T Consensus        72 --Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv  127 (196)
T PF13604_consen   72 --TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV  127 (196)
T ss_dssp             --EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred             --hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence              1111100000000      12345999999977 66778888887765  46676653

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.53  E-value=0.022  Score=51.09  Aligned_cols=53  Identities=21%  Similarity=0.315  Sum_probs=34.9

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLA  335 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~  335 (401)
                      -.+...|..++-+++||+--.  |....+.+...+... ..|..||++|.+.....
T Consensus       143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~  198 (206)
T TIGR03608       143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK  198 (206)
T ss_pred             HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence            345555667788999999866  655555555544431 23677888888877654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=96.53  E-value=0.0032  Score=56.70  Aligned_cols=120  Identities=13%  Similarity=0.122  Sum_probs=61.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc---CHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE---DYQLKKSIL  285 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~l~~~l  285 (401)
                      ..++.|.|+.|.||||+.+.+....-..   ....++.... .. -.++..|+..+............   ...++. .+
T Consensus        29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~i  102 (204)
T cd03282          29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETA-YI  102 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHH-HH
Confidence            4789999999999999998886421110   0111111111 01 12233344444333211111111   122221 12


Q ss_pred             HHHcCCceEEEEEeCCCC--CchhH----HHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          286 RDYLTNKKYFIVLDDVFD--DSEIW----IDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       286 ~~~L~~kr~LlVlDdv~~--~~~~~----~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      .. +..++-|+++|....  ++.+-    ..+...+..  .|+.+|+||.+.+++...
T Consensus       103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~  157 (204)
T cd03282         103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAIL  157 (204)
T ss_pred             HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHh
Confidence            12 235788999999855  23321    223333332  378899999999988776

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.52  E-value=0.032  Score=50.08  Aligned_cols=54  Identities=22%  Similarity=0.320  Sum_probs=34.4

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||.--.  |....+.+...+..- ..|..||++|.+......+
T Consensus       136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~  192 (205)
T cd03226         136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV  192 (205)
T ss_pred             HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            34445556778999999866  555555555544332 2366788888887765543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=96.52  E-value=0.0062  Score=62.72  Aligned_cols=134  Identities=10%  Similarity=0.010  Sum_probs=73.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      ..++|....+.++.+.+..-.....-|.|+|..|+|||++|+.+++...  ..-...+.++.+.-.+ ..+-..++....
T Consensus       187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~lfG~~~  263 (509)
T PRK05022        187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESELFGHVK  263 (509)
T ss_pred             CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHhcCccc
Confidence            5789999999999888865333445678999999999999999987321  1111234444433221 111112221111


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVFITVTDP  331 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~iivTTR~~  331 (401)
                      +.      +..........+ +  ....=-|+||++.. .......|...+..+.           .+.|||.||...
T Consensus       264 g~------~~ga~~~~~g~~-~--~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~  332 (509)
T PRK05022        264 GA------FTGAISNRSGKF-E--LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD  332 (509)
T ss_pred             cc------cCCCcccCCcch-h--hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence            10      000000000011 1  11223468999977 5666677777765432           245888877653

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.50  E-value=0.026  Score=50.48  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=34.9

Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .-.+...+..++-++++|+.-.  |...-+.+...+.. ...|..||++|.+......+
T Consensus       135 rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~  193 (200)
T PRK13540        135 QVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA  193 (200)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence            3344455556778999999866  54444445444443 12467799999887665544

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.50  E-value=0.022  Score=50.13  Aligned_cols=53  Identities=19%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+-.++-++++|+--.  |......+...+..- ..|..||++|.+......
T Consensus       114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  169 (182)
T cd03215         114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG  169 (182)
T ss_pred             HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            34555566778999999866  555555555544431 236678889888755444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.032  Score=57.93  Aligned_cols=73  Identities=18%  Similarity=0.115  Sum_probs=43.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC--CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD--YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      ..-|.|.|+.|+|||+||+.+++... +.+.-.+..++.+.-  -..+.++..                     +...+.
T Consensus       431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~---------------------l~~vfs  488 (952)
T KOG0735|consen  431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF---------------------LNNVFS  488 (952)
T ss_pred             cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH---------------------HHHHHH
Confidence            45678999999999999999998333 333333444443321  112222211                     222233


Q ss_pred             HHcCCceEEEEEeCCCC
Q 015752          287 DYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       287 ~~L~~kr~LlVlDdv~~  303 (401)
                      +.+.-.+-+|||||+..
T Consensus       489 e~~~~~PSiIvLDdld~  505 (952)
T KOG0735|consen  489 EALWYAPSIIVLDDLDC  505 (952)
T ss_pred             HHHhhCCcEEEEcchhh
Confidence            34456789999999953

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.48  E-value=0.027  Score=51.19  Aligned_cols=54  Identities=26%  Similarity=0.279  Sum_probs=33.0

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+..++-+++||.--.  |...-..+...+..-  ..|..||++|.+......
T Consensus       140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~  197 (220)
T cd03293         140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF  197 (220)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence            334455556778999999866  555545555544321  235678888888764433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=96.47  E-value=0.014  Score=50.21  Aligned_cols=121  Identities=11%  Similarity=-0.006  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEE---EEcCCCCCHHHHHHHHH--HHcCCCCCCc---cccCc---CH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAW---VRVSLDYDFRRILDDII--KSVIPPSRVS---VIIGE---DY  278 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~~~~i~--~~l~~~~~~~---~~~~~---~~  278 (401)
                      ..|-|++..|.||||+|..+.-  +...+=..+.+   +.-........++..+-  ..........   .+...   ..
T Consensus         3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a   80 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence            3567778889999999977764  22222122233   33332334444444330  0000000000   00000   11


Q ss_pred             HHHHHHHHHHcC-CceEEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCChh
Q 015752          279 QLKKSILRDYLT-NKKYFIVLDDVFD----DSEIWIDVEELLPDDENGSRVFITVTDPD  332 (401)
Q Consensus       279 ~~l~~~l~~~L~-~kr~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~iivTTR~~~  332 (401)
                      .......++.+. ++-=|||||.+-.    ..-..+.+...+.....+..+|+|.|+..
T Consensus        81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p  139 (159)
T cd00561          81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP  139 (159)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence            222333444444 3556999999854    12233566666665566788999999864

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.47  E-value=0.039  Score=54.56  Aligned_cols=90  Identities=10%  Similarity=0.020  Sum_probs=46.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcc--cccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVK--FYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSI  284 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~  284 (401)
                      ...+|.++|+.|+||||.+.+++......  .+-..+..+++.. .....+-++...+.++.+-.    ...+...+...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~~  248 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKEE  248 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHHH
Confidence            45799999999999999998887632221  1112344444432 11222234455554444311    01133444444


Q ss_pred             HHHHcCCceEEEEEeCCCC
Q 015752          285 LRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~  303 (401)
                      +.+.  .+.-+|++|..-.
T Consensus       249 L~~~--~~~DlVLIDTaGr  265 (388)
T PRK12723        249 ITQS--KDFDLVLVDTIGK  265 (388)
T ss_pred             HHHh--CCCCEEEEcCCCC
Confidence            4332  3345667777643

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=96.47  E-value=0.03  Score=54.14  Aligned_cols=71  Identities=11%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752          291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI  368 (401)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~  368 (401)
                      +++=++|+|++.. |...-..+...+.....++.+|++|.+.+ +...+. .....+.+.      ++  +.+++.+.+.
T Consensus       112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~------~~--~~~~~~~~L~  182 (325)
T PRK08699        112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLP------AP--SHEEALAYLR  182 (325)
T ss_pred             CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCC------CC--CHHHHHHHHH
Confidence            3444556688866 66666666666655444566777777654 443331 011223777      88  8888887776


Q ss_pred             Hh
Q 015752          369 LH  370 (401)
Q Consensus       369 ~~  370 (401)
                      +.
T Consensus       183 ~~  184 (325)
T PRK08699        183 ER  184 (325)
T ss_pred             hc
Confidence            53

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=96.46  E-value=0.05  Score=53.76  Aligned_cols=41  Identities=15%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhccc
Q 015752          191 FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNN  233 (401)
Q Consensus       191 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~  233 (401)
                      |.+..++|..||.+..  -..|.|.|+.|+||+.|+ .++.++.
T Consensus         1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r   42 (431)
T PF10443_consen    1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDR   42 (431)
T ss_pred             CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCC
Confidence            5677899999998743  458899999999999999 7776643

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.45  E-value=0.023  Score=50.99  Aligned_cols=55  Identities=25%  Similarity=0.289  Sum_probs=34.6

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...+...+-++++|.--.  |......+...+..- ..|..||++|.+......+
T Consensus       138 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~  195 (204)
T PRK13538        138 VALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD  195 (204)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC
Confidence            334455556778899999866  555555555544431 2355788888877666555

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.44  E-value=0.039  Score=50.38  Aligned_cols=54  Identities=17%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||+--.  |...-..+...+.. ...|..||++|.+...+...
T Consensus       152 ~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~  208 (224)
T cd03220         152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRL  208 (224)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            45566667788999999866  44332333333322 12356789999988765543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.44  E-value=0.056  Score=49.16  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=34.1

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+-.++-++++|+.-.  |......+...+..- ..|..||++|.+......+
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~  215 (224)
T TIGR02324       159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV  215 (224)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444455667999999866  555555555544431 2366788888887766543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.44  E-value=0.026  Score=50.42  Aligned_cols=24  Identities=13%  Similarity=0.065  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -.+++|+|+.|+|||||.+.+...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (198)
T TIGR01189        26 GEALQVTGPNGIGKTTLLRILAGL   49 (198)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999998763

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.43  E-value=0.02  Score=56.42  Aligned_cols=99  Identities=15%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccC
Q 015752          196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIG  275 (401)
Q Consensus       196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~  275 (401)
                      ..+-+.|..+-..-.++.|.|.+|+|||||+.+++..  ....-..++|++....  ...+ ..-+..++.......-..
T Consensus        69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~  143 (372)
T cd01121          69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLA  143 (372)
T ss_pred             HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEc
Confidence            3444545433333468999999999999999998863  3223346778776543  2332 222345543322110111


Q ss_pred             c-CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752          276 E-DYQLKKSILRDYLTNKKYFIVLDDVF  302 (401)
Q Consensus       276 ~-~~~~l~~~l~~~L~~kr~LlVlDdv~  302 (401)
                      . +.+.+...+.   ..+.-+||+|.+.
T Consensus       144 e~~le~I~~~i~---~~~~~lVVIDSIq  168 (372)
T cd01121         144 ETNLEDILASIE---ELKPDLVIIDSIQ  168 (372)
T ss_pred             cCcHHHHHHHHH---hcCCcEEEEcchH
Confidence            2 4444444443   2466789999984

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK14527 adenylate kinase; Provisional

Probab=96.43  E-value=0.0076  Score=53.58  Aligned_cols=24  Identities=25%  Similarity=0.137  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.|+|++|+||||+|+.+.+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999986

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.42  E-value=0.033  Score=50.58  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=32.7

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-++++|.--.  |...-..+...+..-  ..|..||++|.+.......
T Consensus       141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~  198 (220)
T cd03265         141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQL  198 (220)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34445556777999999866  544444444444321  2256788888887765543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=96.42  E-value=0.037  Score=58.63  Aligned_cols=157  Identities=14%  Similarity=0.125  Sum_probs=80.8

Q ss_pred             CccccccccHHHHHHHH---hcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLL---IEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .++.|.+...+++.+.+   ...       ..-.+-|.++|++|.|||++|+.+.+  .....|   +.++.+.      
T Consensus       152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------  220 (644)
T PRK10733        152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------  220 (644)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------
Confidence            66778766665554443   211       11123488999999999999999987  333333   2222111      


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C----------chhH----HHHHhhCCC--C
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D----------SEIW----IDVEELLPD--D  318 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~----------~~~~----~~l~~~l~~--~  318 (401)
                      +.    ......         ....+...+.......+++|+||+++. -          ...+    ..+...+..  .
T Consensus       221 ~~----~~~~g~---------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~  287 (644)
T PRK10733        221 FV----EMFVGV---------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG  287 (644)
T ss_pred             hH----Hhhhcc---------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence            11    111111         222333333333345788999999855 0          0112    223222221  1


Q ss_pred             CCCcEEEEecCChhHHhhchh--CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752          319 ENGSRVFITVTDPDLLASLEM--ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (401)
Q Consensus       319 ~~gs~iivTTR~~~v~~~~~~--~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~  374 (401)
                      ..+.-+|.||..++.....-.  +..+.. .+.      ..  +.++-.+++..+....
T Consensus       288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~------~P--d~~~R~~Il~~~~~~~  338 (644)
T PRK10733        288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG------LP--DVRGREQILKVHMRRV  338 (644)
T ss_pred             CCCeeEEEecCChhhcCHHHhCCcccceEEEcC------CC--CHHHHHHHHHHHhhcC
Confidence            234455557777654332201  112333 666      55  7778888888777543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.41  E-value=0.0067  Score=58.86  Aligned_cols=25  Identities=12%  Similarity=0.093  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+..++|+|++|+|||.+|+.+++
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~  170 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFK  170 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            4567899999999999999999998

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=96.41  E-value=0.0058  Score=58.54  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=34.1

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|-.++-+|+||.--.  |+..-..+...+.. ...|..||+||.+.+.+...
T Consensus       133 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~  190 (302)
T TIGR01188       133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL  190 (302)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence            344555567788999999866  54443444333322 12367799999988765543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.40  E-value=0.025  Score=51.55  Aligned_cols=54  Identities=19%  Similarity=0.303  Sum_probs=34.1

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+.+.|.-++=+||+|..-+  |...-..+...|..  ...+-.+|+.|.+-.+...+
T Consensus       151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~  208 (252)
T COG1124         151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM  208 (252)
T ss_pred             HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH
Confidence            34556667788999999865  43322333333332  13356688889998888777

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.009  Score=56.47  Aligned_cols=81  Identities=9%  Similarity=0.144  Sum_probs=50.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcc--cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVK--FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      .++|.++|+||.|||+|.+.+++...++  +.|....-+.++.    ..++....    ...+.      -...+.+.+.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWF----sESgK------lV~kmF~kI~  242 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWF----SESGK------LVAKMFQKIQ  242 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHH----hhhhh------HHHHHHHHHH
Confidence            4789999999999999999999865443  3444434443322    23333332    22111      4566677777


Q ss_pred             HHcCCce--EEEEEeCCCC
Q 015752          287 DYLTNKK--YFIVLDDVFD  303 (401)
Q Consensus       287 ~~L~~kr--~LlVlDdv~~  303 (401)
                      +.+.++.  +++.+|.|.+
T Consensus       243 ELv~d~~~lVfvLIDEVES  261 (423)
T KOG0744|consen  243 ELVEDRGNLVFVLIDEVES  261 (423)
T ss_pred             HHHhCCCcEEEEEeHHHHH
Confidence            7776654  4456898854

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.40  E-value=0.029  Score=50.77  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|..|+|||||.+.+..
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G   53 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAG   53 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999999975

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.40  E-value=0.025  Score=51.01  Aligned_cols=53  Identities=11%  Similarity=0.186  Sum_probs=32.6

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-+++||.--.  |...-..+...+..-  ..|..||++|.+......
T Consensus       140 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~  196 (213)
T cd03301         140 ALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT  196 (213)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            34455556677999999866  554444444444321  235678888888765544

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK04132 replication factor C small subunit; Provisional

Probab=96.40  E-value=0.069  Score=57.71  Aligned_cols=147  Identities=9%  Similarity=0.036  Sum_probs=86.5

Q ss_pred             CCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEE
Q 015752          217 SGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYF  295 (401)
Q Consensus       217 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~L  295 (401)
                      |.++||||+|..++++.- .+.++ .++-++.|...... .+++++..+....+                  .-..+.-+
T Consensus       574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~------------------~~~~~~KV  633 (846)
T PRK04132        574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKP------------------IGGASFKI  633 (846)
T ss_pred             CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC------------------cCCCCCEE
Confidence            678999999999998321 12222 45666777654444 33444433221100                  00124579


Q ss_pred             EEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          296 IVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       296 lVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +|||++.. +..+...|...+-.....+++|++|.+. .+.....  +.-.+ ++.      ++  +.++-...+...+.
T Consensus       634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr--SRC~~i~F~------~l--s~~~i~~~L~~I~~  703 (846)
T PRK04132        634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ--SRCAIFRFR------PL--RDEDIAKRLRYIAE  703 (846)
T ss_pred             EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh--hhceEEeCC------CC--CHHHHHHHHHHHHH
Confidence            99999988 6677888888776645566776665554 3333331  22223 888      99  99888888887763


Q ss_pred             CCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          373 SMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       373 ~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      .   ++...+   .+....|+ .|.|.+
T Consensus       704 ~---Egi~i~---~e~L~~Ia~~s~GDl  725 (846)
T PRK04132        704 N---EGLELT---EEGLQAILYIAEGDM  725 (846)
T ss_pred             h---cCCCCC---HHHHHHHHHHcCCCH
Confidence            2   111111   33456677 777764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.40  E-value=0.024  Score=52.91  Aligned_cols=53  Identities=19%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      +...+...+-++++|..-.  |......+...+... ..+..||++|.+......+
T Consensus       150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~  205 (255)
T cd03236         150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYL  205 (255)
T ss_pred             HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence            3444445567999999866  555444444444321 2356788999988776643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.40  E-value=0.02  Score=51.92  Aligned_cols=52  Identities=29%  Similarity=0.412  Sum_probs=33.3

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-C-CCcEEEEecCChhHHh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-E-NGSRVFITVTDPDLLA  335 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~-~gs~iivTTR~~~v~~  335 (401)
                      .+...|..++-+++||.--.  |...-..+...+..- . .|..||++|.+.+...
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  205 (218)
T cd03255         150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE  205 (218)
T ss_pred             HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence            34455566778999999866  555555555544432 2 3667888888877654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.39  E-value=0.031  Score=51.34  Aligned_cols=55  Identities=15%  Similarity=0.125  Sum_probs=34.7

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-C-CCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-E-NGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~-~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++-+++||..-.  |...-..+...+..- . .|..||++|.+.+.+...
T Consensus       145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~  203 (235)
T cd03261         145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAI  203 (235)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence            334445556677999999866  555555555554432 1 366788888887765543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=96.39  E-value=0.037  Score=52.95  Aligned_cols=54  Identities=9%  Similarity=0.195  Sum_probs=33.6

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+-.++-+++||.--.  |+...+.+...+..-..+..||+||.+.+.+..
T Consensus       142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~  197 (301)
T TIGR03522       142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEA  197 (301)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHH
Confidence            334555567788999999866  554444444333322225679999998875444

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.39  E-value=0.024  Score=51.75  Aligned_cols=54  Identities=20%  Similarity=0.203  Sum_probs=35.2

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+..++-+++||+--.  |......+...+..-  ..|..||++|.+......
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~  203 (225)
T PRK10247        146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH  203 (225)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh
Confidence            344555566778899999866  565556665555432  236678888888776643

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.38  E-value=0.03  Score=52.32  Aligned_cols=127  Identities=13%  Similarity=0.101  Sum_probs=65.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCc-cc--ccC---------eEEEEEcCCC----CCHH------------HHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHV-KF--YFD---------CHAWVRVSLD----YDFR------------RILDDII  261 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~---------~~~wv~vs~~----~~~~------------~~~~~i~  261 (401)
                      .+++|+|..|+|||||.+.+..-... .+  .|+         .+.|+.-...    .++.            .-...++
T Consensus        39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l  118 (257)
T PRK11247         39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL  118 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence            58999999999999999999753211 11  011         1223321110    1111            1223444


Q ss_pred             HHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752          262 KSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA  335 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~  335 (401)
                      +.++...........  .-+...-.+...|...+-+++||.--.  |......+...+..-  ..|..||++|.+.....
T Consensus       119 ~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~  198 (257)
T PRK11247        119 AAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAV  198 (257)
T ss_pred             HHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            444442111111122  122222334444555677889999866  555555554444321  23567888888877654


Q ss_pred             h
Q 015752          336 S  336 (401)
Q Consensus       336 ~  336 (401)
                      .
T Consensus       199 ~  199 (257)
T PRK11247        199 A  199 (257)
T ss_pred             H
Confidence            4

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.36  E-value=0.035  Score=49.45  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|+|..|.|||||++.+..-
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            48899999999999999999763

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.36  E-value=0.012  Score=54.02  Aligned_cols=54  Identities=17%  Similarity=0.278  Sum_probs=34.0

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||..-.  |......+...+..-  ..|..||++|.+......+
T Consensus       139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~  196 (232)
T PRK10771        139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI  196 (232)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence            33444556677899999866  555555555544432  2366788888888765543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=96.36  E-value=0.0051  Score=55.25  Aligned_cols=22  Identities=9%  Similarity=-0.017  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|.|||||.+.+..
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHH
Confidence            6899999999999999999973

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.36  E-value=0.012  Score=54.02  Aligned_cols=54  Identities=22%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...|..++=+++||.--.  |......+...+..-  ..|..||++|.+......+
T Consensus       124 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~  181 (230)
T TIGR01184       124 AIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLL  181 (230)
T ss_pred             HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444556677899999866  555555555554431  2356788888887765443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.36  E-value=0.053  Score=49.99  Aligned_cols=55  Identities=18%  Similarity=0.193  Sum_probs=34.0

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...+..++-+++||+.-.  |......+...+..-..+..||++|.+.+.....
T Consensus       152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~  208 (242)
T TIGR03411       152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSI  208 (242)
T ss_pred             HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence            344455556677999999866  5555455544443322245788888887766543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=96.36  E-value=0.096  Score=50.57  Aligned_cols=72  Identities=7%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752          291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI  368 (401)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~  368 (401)
                      +++=++|+|++.. .......|...+-+...++.+|++|.+. .+...+.. ....+.+.      ++  ++++..+.+.
T Consensus       106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~------~~--~~~~~~~~L~  176 (325)
T PRK06871        106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIH------PP--EEQQALDWLQ  176 (325)
T ss_pred             CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCC------CC--CHHHHHHHHH
Confidence            5666888999987 6778888888888877788888777765 44434310 12333888      99  9999988887


Q ss_pred             Hhh
Q 015752          369 LHY  371 (401)
Q Consensus       369 ~~a  371 (401)
                      +..
T Consensus       177 ~~~  179 (325)
T PRK06871        177 AQS  179 (325)
T ss_pred             HHh
Confidence            764

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.35  E-value=0.035  Score=50.14  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=33.5

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-++++|+.-.  |......+...+...  ..+..||++|.+......
T Consensus       138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~  194 (213)
T TIGR01277       138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA  194 (213)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence            33444455677999999866  555555555554432  236778888888775543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.35  E-value=0.035  Score=54.46  Aligned_cols=58  Identities=17%  Similarity=0.018  Sum_probs=34.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCC
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIP  266 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~  266 (401)
                      -.+++++|+.|+||||++.++......+.....+..++... .....+-+....+.++.
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv  195 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV  195 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence            36889999999999999999987321111123445554322 22334444554555543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.35  E-value=0.0026  Score=52.07  Aligned_cols=20  Identities=25%  Similarity=0.260  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|.|.+|+||||+|+.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~   20 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAE   20 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999987

...

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.34  E-value=0.038  Score=49.51  Aligned_cols=52  Identities=19%  Similarity=0.150  Sum_probs=31.8

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHH
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLL  334 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~  334 (401)
                      -.+...+..++=++++|+.-.  |......+...+.. ...|..||++|.+..-.
T Consensus       134 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~  188 (201)
T cd03231         134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL  188 (201)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhh
Confidence            334455556667899999866  55555555555432 12356788888865433

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.34  E-value=0.048  Score=48.77  Aligned_cols=46  Identities=17%  Similarity=0.199  Sum_probs=28.4

Q ss_pred             CceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          291 NKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       291 ~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      ..+-+++||....  |...-..+...+.....+..||++|.+......
T Consensus       134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~  181 (197)
T cd03278         134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA  181 (197)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence            4456888999866  444444444444332224668888888876643

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.33  E-value=0.01  Score=53.46  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++.+|+|.|.+|+||||+|+.++.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~   30 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSE   30 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHH
Confidence            3568999999999999999999988

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.33  E-value=0.0091  Score=54.16  Aligned_cols=21  Identities=19%  Similarity=0.079  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~   22 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAE   22 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999876

>PF14516 AAA_35: AAA-like domain

Probab=96.33  E-value=0.13  Score=49.96  Aligned_cols=113  Identities=11%  Similarity=0.120  Sum_probs=67.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC----C-CCHHHHH---
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL----D-YDFRRIL---  257 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~-~~~~~~~---  257 (401)
                      +..|.|...-+++.+.|...   -..+.|.|+..+|||+|...+.+.  .+..=-.+++++...    . .+....+   
T Consensus        11 ~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~   85 (331)
T PF14516_consen   11 PFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQFLRWF   85 (331)
T ss_pred             CcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHHHHHHH
Confidence            44577886677777777652   258889999999999999999873  332223455776544    1 2344444   


Q ss_pred             -HHHHHHcCCCCCCccccC--c-CHHHHHHHHHHHc-C--CceEEEEEeCCCC
Q 015752          258 -DDIIKSVIPPSRVSVIIG--E-DYQLKKSILRDYL-T--NKKYFIVLDDVFD  303 (401)
Q Consensus       258 -~~i~~~l~~~~~~~~~~~--~-~~~~l~~~l~~~L-~--~kr~LlVlDdv~~  303 (401)
                       ..|..++.....-..-+.  . ........+.+++ .  +++.+|+||++..
T Consensus        86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~  138 (331)
T PF14516_consen   86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDR  138 (331)
T ss_pred             HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhh
Confidence             444555544321000000  0 2334444555543 2  5899999999976

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.33  E-value=0.042  Score=50.70  Aligned_cols=53  Identities=15%  Similarity=0.235  Sum_probs=34.4

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      +...+..++-+++||..-.  |......+...+..- ..|..||++|.+.......
T Consensus       152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~  207 (242)
T PRK11124        152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKT  207 (242)
T ss_pred             HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            4444555677999999876  666666665555432 2366788888887766543

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.32  E-value=0.023  Score=56.34  Aligned_cols=23  Identities=26%  Similarity=0.151  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+++++|++|+||||++.+++.
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.31  E-value=0.02  Score=51.94  Aligned_cols=52  Identities=19%  Similarity=0.211  Sum_probs=32.2

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      +.+.+..++-+++||+...  |....+.+...+.....+..||++|.+......
T Consensus       150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  203 (221)
T cd03244         150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID  203 (221)
T ss_pred             HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence            4444556677899999876  555555555544432234568888887765543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.31  E-value=0.036  Score=50.00  Aligned_cols=53  Identities=15%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-++++|+--.  |......+...+..- ..|..||++|.+......
T Consensus       146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~  201 (214)
T cd03292         146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT  201 (214)
T ss_pred             HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            34444555667999999866  555555554444321 235678888888766554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=96.31  E-value=0.084  Score=51.35  Aligned_cols=71  Identities=10%  Similarity=0.075  Sum_probs=50.5

Q ss_pred             CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hhHHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752          291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD-PDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI  368 (401)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~  368 (401)
                      +++=++|+|+... +...+..|...+-+...++.+|++|.+ ..+...+.. ....+.+.      ++  +.++..+.+.
T Consensus       131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~------~~--~~~~~~~~L~  201 (342)
T PRK06964        131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMT------VP--APEAAAAWLA  201 (342)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEec------CC--CHHHHHHHHH
Confidence            4556888999987 788889999888877777777666555 444444411 12334888      89  9999988887


Q ss_pred             Hh
Q 015752          369 LH  370 (401)
Q Consensus       369 ~~  370 (401)
                      +.
T Consensus       202 ~~  203 (342)
T PRK06964        202 AQ  203 (342)
T ss_pred             Hc
Confidence            64

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.30  E-value=0.0082  Score=58.60  Aligned_cols=113  Identities=17%  Similarity=0.148  Sum_probs=65.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      ...+.|.|+.|+||||+.+.+.+  .+......+++. +..+...  ..... ..+....    ....+.......++..
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~----evg~~~~~~~~~l~~~  191 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNK-RSLINQR----EVGLDTLSFANALRAA  191 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCc-cceEEcc----ccCCCCcCHHHHHHHh
Confidence            36799999999999999998876  344344445543 3222111  00000 0000000    0111222345567777


Q ss_pred             cCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752          289 LTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       289 L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      |...+=.|++|.+.+ .+.+......   ...|..|+.|+...++..
T Consensus       192 lr~~pd~i~vgEird-~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~  234 (343)
T TIGR01420       192 LREDPDVILIGEMRD-LETVELALTA---AETGHLVFGTLHTNSAAQ  234 (343)
T ss_pred             hccCCCEEEEeCCCC-HHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence            888899999999988 7766654433   233556777777765543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK08233 hypothetical protein; Provisional

Probab=96.30  E-value=0.0033  Score=55.07  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|.+|+||||||+.+..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999999987

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.30  E-value=0.045  Score=55.98  Aligned_cols=125  Identities=11%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEE-------E----cCCCCCHHH------------------HHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWV-------R----VSLDYDFRR------------------ILDDI  260 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~----vs~~~~~~~------------------~~~~i  260 (401)
                      .+++|+|..|+|||||.+.+..-...   ..+.+++       .    .....++.+                  ....+
T Consensus        51 EivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el  127 (549)
T PRK13545         51 EIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI  127 (549)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence            58999999999999999999863211   1111211       1    111112111                  11223


Q ss_pred             HHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 015752          261 IKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLA  335 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~  335 (401)
                      ++.++........... +. +...-.+...|...+-+|+||.--.  |......+...+.. ...|..||++|.+.....
T Consensus       128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~  207 (549)
T PRK13545        128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK  207 (549)
T ss_pred             HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            3333332110011222 22 2223345555666788999999866  55444444444332 124667888998877655


Q ss_pred             hc
Q 015752          336 SL  337 (401)
Q Consensus       336 ~~  337 (401)
                      ..
T Consensus       208 ~l  209 (549)
T PRK13545        208 SF  209 (549)
T ss_pred             Hh
Confidence            43

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.29  E-value=0.051  Score=48.79  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc-------------------CCCC-------------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV-------------------SLDY-------------------  251 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-------------------s~~~-------------------  251 (401)
                      .|++|+|++|+|||||.+-+..=   ...=++.+|+.-                   =|.|                   
T Consensus        29 evv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v  105 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV  105 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence            58999999999999999988642   222223344421                   0111                   


Q ss_pred             ------CHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCC
Q 015752          252 ------DFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DEN  320 (401)
Q Consensus       252 ------~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~  320 (401)
                            ...+.-.++++..+.......-...  .-++-.-.|.+.|.=++-++.+|..-+  |++.-.++...+.. ...
T Consensus       106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e  185 (240)
T COG1126         106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE  185 (240)
T ss_pred             cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence                  1233444555555544322100111  333444556667777788899999977  66655555444332 234


Q ss_pred             CcEEEEecCChhHHhhc
Q 015752          321 GSRVFITVTDPDLLASL  337 (401)
Q Consensus       321 gs~iivTTR~~~v~~~~  337 (401)
                      |-..|+.|..-..|..+
T Consensus       186 GmTMivVTHEM~FAr~V  202 (240)
T COG1126         186 GMTMIIVTHEMGFAREV  202 (240)
T ss_pred             CCeEEEEechhHHHHHh
Confidence            66677777777777665

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.29  E-value=0.034  Score=52.44  Aligned_cols=56  Identities=27%  Similarity=0.316  Sum_probs=35.6

Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      ..-.+...|..++-+++||+...  |......+...+..- ..|..||++|.+.+.+..
T Consensus       145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~  203 (274)
T PRK13647        145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE  203 (274)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            33445555667788999999876  555555555544321 236678888888776543

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.29  E-value=0.045  Score=50.22  Aligned_cols=54  Identities=24%  Similarity=0.335  Sum_probs=33.2

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-++++|.--.  |......+...+... ..|..||++|.+.+....+
T Consensus       153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~  209 (236)
T cd03219         153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSL  209 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence            34444556678999999866  555445554444321 1456688888887766553

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PTZ00301 uridine kinase; Provisional

Probab=96.28  E-value=0.0043  Score=56.12  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|.+|+||||||+.+.+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~   25 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVS   25 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH
Confidence            47999999999999999998865

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.26  E-value=0.032  Score=52.43  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|.|+.|.|||||.+.+..
T Consensus        35 Ge~~~I~G~nGsGKSTLl~~i~G   57 (269)
T PRK13648         35 GQWTSIVGHNGSGKSTIAKLMIG   57 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999975

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.26  E-value=0.047  Score=51.36  Aligned_cols=53  Identities=19%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+-.++-+|+||.--.  |...-..+...+..-  ..|..||++|.+.+....
T Consensus       170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~  226 (269)
T cd03294         170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALR  226 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            34555556778899999866  555555555544321  236678888888765544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=96.25  E-value=0.06  Score=48.95  Aligned_cols=54  Identities=17%  Similarity=0.213  Sum_probs=32.9

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||.--.  |...-+.+...+... ..+..||++|.+.+.....
T Consensus       147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  203 (222)
T PRK10908        147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR  203 (222)
T ss_pred             HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            34444556677999999866  554444444433321 2356788888887766554

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=96.25  E-value=0.028  Score=50.61  Aligned_cols=53  Identities=15%  Similarity=0.282  Sum_probs=35.2

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHH-HHHhhCCCCC-C-CcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWI-DVEELLPDDE-N-GSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~~~-~-gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-++++|+.-.  |+.... .+...+.... . |..||++|.+......
T Consensus       131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~  188 (204)
T cd03240         131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA  188 (204)
T ss_pred             HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence            45566677889999999876  555555 5555443322 2 5678888888876644

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.24  E-value=0.035  Score=51.08  Aligned_cols=54  Identities=19%  Similarity=0.213  Sum_probs=35.4

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||..-.  |......+...+..-  ..+..||++|.+.......
T Consensus       163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~  220 (236)
T cd03267         163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL  220 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence            44555566778999999876  555555555544431  2356789999988765543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=96.23  E-value=0.024  Score=58.31  Aligned_cols=126  Identities=16%  Similarity=0.140  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccC-ccccc-----CeEEEEEcCC---------------CC-C-HHHHHHHHHHHcCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNH-VKFYF-----DCHAWVRVSL---------------DY-D-FRRILDDIIKSVIP  266 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F-----~~~~wv~vs~---------------~~-~-~~~~~~~i~~~l~~  266 (401)
                      .-|+|+|+.|+|||||.+.+..... .....     -.+.++.-..               .+ + ...-.+..+..++.
T Consensus       349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F  428 (530)
T COG0488         349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF  428 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence            4689999999999999999954211 11100     0112221111               01 1 13444555555544


Q ss_pred             CCCCc-cccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          267 PSRVS-VIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       267 ~~~~~-~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      ..... ..+..  .-+...-.+...+-.++-+||||.--+  |.+..+.|..+|.+- +|+ ||+.|.+......+
T Consensus       429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~v  502 (530)
T COG0488         429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRV  502 (530)
T ss_pred             ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhh
Confidence            33221 12222  333444556666678899999999866  666667777666542 354 88889999888776

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=96.23  E-value=0.048  Score=52.01  Aligned_cols=174  Identities=14%  Similarity=0.102  Sum_probs=94.2

Q ss_pred             CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCH-HHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDF-RRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~~i~  261 (401)
                      ..++|-.++..++-.|+...  .+...-+.|+|+.|+|||+|.-....+   .+.|. ...-|........ .-.+..|.
T Consensus        24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~  100 (408)
T KOG2228|consen   24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGIT  100 (408)
T ss_pred             cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence            46899999999998888641  223445678899999999998877765   22232 3344445444332 22456666


Q ss_pred             HHcCCCCCCc-cccCcCHHHHHHHHHHHcC------CceEEEEEeCCCC-Cc-h---hHHHHHhhCCC-CCCCcEEEEec
Q 015752          262 KSVIPPSRVS-VIIGEDYQLKKSILRDYLT------NKKYFIVLDDVFD-DS-E---IWIDVEELLPD-DENGSRVFITV  328 (401)
Q Consensus       262 ~~l~~~~~~~-~~~~~~~~~l~~~l~~~L~------~kr~LlVlDdv~~-~~-~---~~~~l~~~l~~-~~~gs~iivTT  328 (401)
                      .|+....... .... +..+....+...|+      +-++.+|+|.+.- .+ .   -.-.+...-.. ..+-|-|-+||
T Consensus       101 rql~~e~~~~~k~~g-sfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt  179 (408)
T KOG2228|consen  101 RQLALELNRIVKSFG-SFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT  179 (408)
T ss_pred             HHHHHHHhhhheeec-ccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence            6554332111 0111 33333334444442      2368888887743 11 1   11112222222 23455566888


Q ss_pred             CChhHH---hhchhC-CCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          329 TDPDLL---ASLEME-NGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       329 R~~~v~---~~~~~~-~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      |-.-..   ..+... ....+ -++      ++  +-++...++++..
T Consensus       180 rld~lE~LEKRVKSRFshr~I~m~~------~~--~l~~yv~l~r~ll  219 (408)
T KOG2228|consen  180 RLDILELLEKRVKSRFSHRVIFMLP------SL--PLGDYVDLYRKLL  219 (408)
T ss_pred             cccHHHHHHHHHHhhcccceeeccC------CC--ChHHHHHHHHHHh
Confidence            865322   222111 22223 444      77  8899999999886

>PRK10867 signal recognition particle protein; Provisional

Probab=96.22  E-value=0.057  Score=54.16  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.++|.+|+||||.+.+++.
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            468999999999999997766654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.22  E-value=0.041  Score=49.48  Aligned_cols=51  Identities=22%  Similarity=0.188  Sum_probs=33.0

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHH
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLL  334 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~  334 (401)
                      .+...+..++-++++|+--.  |......+...+.. ...|..||++|.+....
T Consensus       137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~  190 (207)
T PRK13539        137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL  190 (207)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence            34445556778999999866  55555566555543 23466788888876554

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.21  E-value=0.052  Score=50.28  Aligned_cols=54  Identities=13%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||..-.  |...-..+...+.. ...|..||++|.+......+
T Consensus       154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~  210 (250)
T PRK11264        154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDV  210 (250)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34445556677999999866  55444455444332 12356788888887765543

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=96.21  E-value=0.056  Score=50.33  Aligned_cols=55  Identities=20%  Similarity=0.275  Sum_probs=35.4

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...+..++-+++||..-.  |....+.+...+..- ..|..||++|.+.......
T Consensus       146 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  203 (256)
T TIGR03873       146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASY  203 (256)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            344455556778999999866  555555555544432 2366788888887766543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=96.21  E-value=0.17  Score=49.22  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=84.9

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc---ccccCe-----EEEEEcCCCCCHHHHHHHHHHHcCC
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV---KFYFDC-----HAWVRVSLDYDFRRILDDIIKSVIP  266 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~-----~~wv~vs~~~~~~~~~~~i~~~l~~  266 (401)
                      -+++...+..+ .-..-+.+.|+.|+||+++|..+..-.--   ...-.|     +.++..+..+|+..+        .+
T Consensus        11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p   81 (334)
T PRK07993         11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP   81 (334)
T ss_pred             HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence            45566665542 33457789999999999999887542110   000000     011111112221110        00


Q ss_pred             CCCCccccCc-CHHHHHHHHHHH----cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchh
Q 015752          267 PSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEM  339 (401)
Q Consensus       267 ~~~~~~~~~~-~~~~l~~~l~~~----L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~  339 (401)
                      ..    .-.. ..+++.......    ..+++=++|+|+.+. +.+.-..|...+-+...++.+|++|.+. .+...+..
T Consensus        82 ~~----~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS  157 (334)
T PRK07993         82 EK----GKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS  157 (334)
T ss_pred             cc----ccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence            00    0011 233333322221    135677899999977 6777888888888777788777777664 45544421


Q ss_pred             CCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ++ ..+.+.      ++  +.+++.+.+.+..
T Consensus       158 RC-q~~~~~------~~--~~~~~~~~L~~~~  180 (334)
T PRK07993        158 RC-RLHYLA------PP--PEQYALTWLSREV  180 (334)
T ss_pred             cc-ccccCC------CC--CHHHHHHHHHHcc
Confidence            12 233777      88  8888888776543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.21  E-value=0.033  Score=49.64  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEE---------------EcCCCCC---HHHHHHHHHHHcCCCCCC
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWV---------------RVSLDYD---FRRILDDIIKSVIPPSRV  270 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---------------~vs~~~~---~~~~~~~i~~~l~~~~~~  270 (401)
                      -.+++|.|..|.|||||.+.+..-.. .......+++               .+.+.+.   ...+...+.......   
T Consensus        35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---  110 (194)
T cd03213          35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR---  110 (194)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence            35889999999999999999986320 0111222221               1111110   011222211100000   


Q ss_pred             ccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChh
Q 015752          271 SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPD  332 (401)
Q Consensus       271 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~  332 (401)
                        ..+ .-+...-.+...+..++-++++|+.-.  |......+...+..- ..|..||++|.+..
T Consensus       111 --~LS-~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         111 --GLS-GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             --cCC-HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence              011 122223344555556677999999866  555555555544432 23667888888764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.20  E-value=0.039  Score=50.34  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=32.7

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA  335 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~  335 (401)
                      +...|...+=+++||+--.  |....+.+...+..-  ..|..||++|.+.....
T Consensus       157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  211 (228)
T PRK10584        157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA  211 (228)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            4444555667999999866  555555555555331  23567888888877654

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=96.20  E-value=0.18  Score=48.50  Aligned_cols=71  Identities=11%  Similarity=0.125  Sum_probs=49.9

Q ss_pred             CceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHH
Q 015752          291 NKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFI  368 (401)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~  368 (401)
                      +++=++|+|++.. +......|...+-+...++.+|++|.+. .+...+.. ....+.+.      ++  +.+++.+.+.
T Consensus       107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~------~~--~~~~~~~~L~  177 (319)
T PRK06090        107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVT------PP--STAQAMQWLK  177 (319)
T ss_pred             CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCC------CC--CHHHHHHHHH
Confidence            4556889999977 6778888988888777778777766664 45444411 12333888      88  9998888776


Q ss_pred             Hh
Q 015752          369 LH  370 (401)
Q Consensus       369 ~~  370 (401)
                      +.
T Consensus       178 ~~  179 (319)
T PRK06090        178 GQ  179 (319)
T ss_pred             Hc
Confidence            54

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=96.19  E-value=0.035  Score=56.43  Aligned_cols=134  Identities=11%  Similarity=0.023  Sum_probs=69.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      ..++|......++...+..-......+.|.|..|.||+++|+.+....  .......+-++...-  ....+...+  ++
T Consensus       134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l--fg  207 (463)
T TIGR01818       134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL--FG  207 (463)
T ss_pred             cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh--cC
Confidence            357777777777776664422233457899999999999999997622  111122222332222  223333322  22


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVFITVTDP  331 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~iivTTR~~  331 (401)
                      ....   .+......   ..........-.|+||++.. .......|...+..+.           .+.+||.||...
T Consensus       208 ~~~~---~~~~~~~~---~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~  279 (463)
T TIGR01818       208 HEKG---AFTGANTR---RQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN  279 (463)
T ss_pred             CCCC---CCCCcccC---CCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence            1110   01100000   00011112234488999977 5666677777665432           245788887654

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.19  E-value=0.052  Score=50.09  Aligned_cols=53  Identities=17%  Similarity=0.125  Sum_probs=33.6

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-++++|..-.  |......+...+...  ..|..||++|.+......
T Consensus       141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~  197 (241)
T PRK14250        141 SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR  197 (241)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHH
Confidence            34444556777999999866  555555555554432  135678888888776544

>PHA02244 ATPase-like protein

Probab=96.19  E-value=0.025  Score=55.09  Aligned_cols=42  Identities=10%  Similarity=0.048  Sum_probs=28.0

Q ss_pred             CccccccccH----HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGR----EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~----~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.....    ..+..++..   +. -|.|+|++|+|||+||+.+++
T Consensus        96 ~~~ig~sp~~~~~~~ri~r~l~~---~~-PVLL~GppGtGKTtLA~aLA~  141 (383)
T PHA02244         96 TTKIASNPTFHYETADIAKIVNA---NI-PVFLKGGAGSGKNHIAEQIAE  141 (383)
T ss_pred             CcccCCCHHHHHHHHHHHHHHhc---CC-CEEEECCCCCCHHHHHHHHHH
Confidence            4455544333    344455433   22 356799999999999999987

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=96.19  E-value=0.0083  Score=55.28  Aligned_cols=54  Identities=17%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-++++|..-.  |....+.+...+...  ..+..||++|.+...+..+
T Consensus       140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~  197 (237)
T TIGR00968       140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEV  197 (237)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence            34444555678899999866  666666665555432  2266788888888765443

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.18  E-value=0.0044  Score=55.92  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+..+|+|.|.+|+|||||++.++.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999987

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.18  E-value=0.028  Score=50.38  Aligned_cols=22  Identities=18%  Similarity=0.039  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.|+.|.|||||.+.+..
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            7899999999999999998864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.18  E-value=0.038  Score=52.26  Aligned_cols=56  Identities=16%  Similarity=0.198  Sum_probs=36.0

Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      ..-.|...|..++-+++||+...  |...-..+...+..-  ..|..||++|.+......
T Consensus       147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~  206 (279)
T PRK13650        147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL  206 (279)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence            33445555666788999999877  555555555544431  236778888888766543

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=96.17  E-value=0.0091  Score=56.26  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=25.4

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+++.+...   -+-+.++|+.|+|||++++....
T Consensus        23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~   55 (272)
T PF12775_consen   23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLS   55 (272)
T ss_dssp             HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhc
Confidence            4566666653   24567999999999999999876

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.17  E-value=0.044  Score=50.44  Aligned_cols=54  Identities=22%  Similarity=0.282  Sum_probs=33.8

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+...+-+++||.--.  |......+...+..-  ..|..||++|.+.+.....
T Consensus       154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~  211 (241)
T cd03256         154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREY  211 (241)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444556677999999876  555555555544432  2356788888887766543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.17  E-value=0.015  Score=51.17  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .|.|.|.+|+||||+|+.+.+.
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999884

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.17  E-value=0.032  Score=51.75  Aligned_cols=129  Identities=19%  Similarity=0.200  Sum_probs=70.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCccc---c-------------c-CeEEEEE----------------cCC------
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKF---Y-------------F-DCHAWVR----------------VSL------  249 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-------------F-~~~~wv~----------------vs~------  249 (401)
                      -.+++|+|+.|+|||||.+.++.-...+.   .             + ....++.                .+.      
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~  107 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL  107 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence            46899999999999999999976211100   0             0 0111221                010      


Q ss_pred             --CCC--HHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CC
Q 015752          250 --DYD--FRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DE  319 (401)
Q Consensus       250 --~~~--~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~  319 (401)
                        .++  -.+.....++.++........+.+  .-+...-.+...|..+.=+|+||.--+  |...--.++..+..  ..
T Consensus       108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~  187 (258)
T COG1120         108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE  187 (258)
T ss_pred             ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence              011  122455556666554332223444  333344455666778888889998644  32211222222222  23


Q ss_pred             CCcEEEEecCChhHHhhc
Q 015752          320 NGSRVFITVTDPDLLASL  337 (401)
Q Consensus       320 ~gs~iivTTR~~~v~~~~  337 (401)
                      .|..||+++.+.+.|...
T Consensus       188 ~~~tvv~vlHDlN~A~ry  205 (258)
T COG1120         188 KGLTVVMVLHDLNLAARY  205 (258)
T ss_pred             cCCEEEEEecCHHHHHHh
Confidence            477899999999888776

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.17  E-value=0.056  Score=51.05  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=35.0

Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      ..-.+...|..++-+++||+...  |...-..+...+..-  ..|..||++|.+.+....
T Consensus       144 qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~  203 (277)
T PRK13652        144 KRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPE  203 (277)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence            33445555666778999999876  555555555544331  225678888888765543

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.17  E-value=0.044  Score=49.39  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=32.7

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++=+++||+--.  |....+.+...+..- ..|..||++|.+......
T Consensus       145 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~  200 (213)
T cd03262         145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE  200 (213)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            34444555667999999866  555555555544431 235668888887765543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]

Probab=96.16  E-value=0.03  Score=57.71  Aligned_cols=130  Identities=17%  Similarity=0.250  Sum_probs=72.0

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHH-HHHHhhcccCcccccCeEEEEEcCCCCC--HHHHHHHHHHHcCCCCCCc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTA-FAADTYNNNHVKFYFDCHAWVRVSLDYD--FRRILDDIIKSVIPPSRVS  271 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~  271 (401)
                      +++|++.+.+    ..||.|+|..|+|||| |++.+|.+.     |...--|-+.|+-.  .-.+.+.+...++...+..
T Consensus       361 R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~  431 (1042)
T KOG0924|consen  361 RDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT  431 (1042)
T ss_pred             HHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence            4566666643    4689999999999997 899998743     22111333444433  3445666666665443332


Q ss_pred             ----cccCc------------CHHHHHHHHHHHcCCceEEEEEeCCCC---CchhH-HHHHhhCCCCCCCcEEEEecCCh
Q 015752          272 ----VIIGE------------DYQLKKSILRDYLTNKKYFIVLDDVFD---DSEIW-IDVEELLPDDENGSRVFITVTDP  331 (401)
Q Consensus       272 ----~~~~~------------~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~-~~l~~~l~~~~~gs~iivTTR~~  331 (401)
                          -.+++            +.--+.+.|....-.|=-.||+|..+.   +.+.+ .-+...+.. ...-|+||||-.-
T Consensus       432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm  510 (1042)
T KOG0924|consen  432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATM  510 (1042)
T ss_pred             cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccc
Confidence                00111            222233334433334556889999866   22222 222333332 3478999998776


Q ss_pred             hHH
Q 015752          332 DLL  334 (401)
Q Consensus       332 ~v~  334 (401)
                      +.-
T Consensus       511 ~a~  513 (1042)
T KOG0924|consen  511 DAQ  513 (1042)
T ss_pred             cHH
Confidence            543

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.04  Score=55.50  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=36.4

Q ss_pred             Cccccccc---cHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          186 LDISHFER---GREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       186 ~~~vGr~~---~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .++-|-|+   ++++|++.|.+.       ..=++=|.++|++|.|||-||+.++..
T Consensus       304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE  360 (752)
T KOG0734|consen  304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE  360 (752)
T ss_pred             ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence            67778664   567778888763       233567889999999999999999873

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=96.14  E-value=0.073  Score=55.16  Aligned_cols=53  Identities=23%  Similarity=0.316  Sum_probs=35.0

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++-+++||.-..  |...-..+...+..  .|..||++|.+.......
T Consensus       164 v~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~  218 (530)
T PRK15064        164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSV  218 (530)
T ss_pred             HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhh
Confidence            344445556778999999877  65555556555543  356688888888765543

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.14  E-value=0.049  Score=49.94  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=35.1

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||..-.  |......+...+..-  ..|..||++|.+.+....+
T Consensus       155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~  212 (233)
T PRK11629        155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM  212 (233)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence            34455556778999999866  555555555555432  2366788888887765544

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.14  E-value=0.026  Score=50.13  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|..|+|||||.+.+..
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999986

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.13  E-value=0.043  Score=50.59  Aligned_cols=52  Identities=23%  Similarity=0.307  Sum_probs=31.6

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      +...|-.++-+++||.--.  |...-..+...+..-  ..|..||++|.+......
T Consensus       156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~  211 (243)
T TIGR02315       156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK  211 (243)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            3444455667899999866  554444444444321  235678888888776544

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.13  E-value=0.044  Score=50.89  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=32.9

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-+++||+.-.  |......+...+..-  ..|..||++|.+......
T Consensus       156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~  212 (252)
T TIGR03005       156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE  212 (252)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence            34444555667899999866  555555555544431  236678888888765543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=96.13  E-value=0.048  Score=53.25  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=35.5

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++-+++||.--.  |......+...+..-  ..|..||++|.+.+....+
T Consensus       149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~  207 (343)
T PRK11153        149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRI  207 (343)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            344455556778999999866  555555555555432  2366788888888765543

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.12  E-value=0.019  Score=52.61  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -|.|.|++|+||||+|+.+.+
T Consensus         8 rIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999977

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.12  E-value=0.078  Score=51.98  Aligned_cols=101  Identities=9%  Similarity=-0.006  Sum_probs=56.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSIL  285 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l  285 (401)
                      +..+++++|+.|+||||++..++..  ....-..+.+++... .....+-++...+.++.+.     ... +..++...+
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-----~~~~dp~dL~~al  277 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-----IVATSPAELEEAV  277 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-----EecCCHHHHHHHH
Confidence            4579999999999999999888763  222223455565532 2233444555555554331     111 555555555


Q ss_pred             HHHc-CCceEEEEEeCCCC---CchhHHHHHhhC
Q 015752          286 RDYL-TNKKYFIVLDDVFD---DSEIWIDVEELL  315 (401)
Q Consensus       286 ~~~L-~~kr~LlVlDdv~~---~~~~~~~l~~~l  315 (401)
                      ...- .+..=+|++|-.-.   +....+.+....
T Consensus       278 ~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~  311 (407)
T PRK12726        278 QYMTYVNCVDHILIDTVGRNYLAEESVSEISAYT  311 (407)
T ss_pred             HHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence            4432 13456788888744   233444554443

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.12  E-value=0.063  Score=48.48  Aligned_cols=54  Identities=17%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+..++-+++||+--.  |...-..+...+..-  ..|..||++|.+.+....
T Consensus       140 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~  197 (214)
T cd03297         140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY  197 (214)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence            344455566778999999866  554444554444321  225678888888765543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=96.11  E-value=0.048  Score=52.32  Aligned_cols=54  Identities=22%  Similarity=0.174  Sum_probs=33.8

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...|-.++=+++||.--.  |+..-..+...+.. ...|..||+||.+.+-+..+
T Consensus       148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~  204 (306)
T PRK13537        148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL  204 (306)
T ss_pred             HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence            34555667788999999866  54433333333322 12477899999998765443

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=96.10  E-value=0.011  Score=56.50  Aligned_cols=128  Identities=12%  Similarity=0.132  Sum_probs=68.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c---ccC------------eEEEEEcCC----CCCH----------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F---YFD------------CHAWVRVSL----DYDF----------------  253 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~---~F~------------~~~wv~vs~----~~~~----------------  253 (401)
                      .++++.|+.|+|||||.+.+..-.+-. .   .+.            .+.++.-..    ..++                
T Consensus        32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~  111 (293)
T COG1131          32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE  111 (293)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence            589999999999999999997632110 0   000            122221111    1112                


Q ss_pred             --HHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCC-cEEE
Q 015752          254 --RRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENG-SRVF  325 (401)
Q Consensus       254 --~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~g-s~ii  325 (401)
                        ..-...+++.++........+..  .-....-.+...|-.++=|++||.--+  |+..-..+...+.. ...| ..||
T Consensus       112 ~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvl  191 (293)
T COG1131         112 EAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTIL  191 (293)
T ss_pred             HHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEE
Confidence              22344566666555311111222  122222334445567788999999766  54433333333332 1223 6799


Q ss_pred             EecCChhHHhhc
Q 015752          326 ITVTDPDLLASL  337 (401)
Q Consensus       326 vTTR~~~v~~~~  337 (401)
                      +||...+-+..+
T Consensus       192 issH~l~e~~~~  203 (293)
T COG1131         192 LSTHILEEAEEL  203 (293)
T ss_pred             EeCCcHHHHHHh
Confidence            999998776664

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.10  E-value=0.071  Score=47.87  Aligned_cols=52  Identities=13%  Similarity=0.153  Sum_probs=32.9

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      .+...+..++-+++||+...  |....+.+...+.....|..||++|.+.....
T Consensus       135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~  188 (207)
T cd03369         135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII  188 (207)
T ss_pred             HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence            34444556778889999876  55555555554443233667888888776654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=96.10  E-value=0.067  Score=55.18  Aligned_cols=128  Identities=9%  Similarity=0.002  Sum_probs=66.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCc-cc--ccC---------------eEEEEEcCC----CCCH--------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHV-KF--YFD---------------CHAWVRVSL----DYDF--------------  253 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~---------------~~~wv~vs~----~~~~--------------  253 (401)
                      .+++|+|+.|+|||||.+.++.-... .+  .|+               .+.++.-..    ..++              
T Consensus        38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  117 (510)
T PRK15439         38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS  117 (510)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence            58999999999999999999753110 00  011               122332110    0111              


Q ss_pred             HHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEec
Q 015752          254 RRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITV  328 (401)
Q Consensus       254 ~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTT  328 (401)
                      ..-...+++.++...........  .-+...-.+...|..++-+++||.--.  |...-..+...+.. ...|..||++|
T Consensus       118 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivt  197 (510)
T PRK15439        118 MQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS  197 (510)
T ss_pred             HHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            12234455555543211111222  223333344555566788999999866  54433444433322 12366788999


Q ss_pred             CChhHHhhc
Q 015752          329 TDPDLLASL  337 (401)
Q Consensus       329 R~~~v~~~~  337 (401)
                      .+.......
T Consensus       198 Hd~~~~~~~  206 (510)
T PRK15439        198 HKLPEIRQL  206 (510)
T ss_pred             CCHHHHHHh
Confidence            887665443

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.10  E-value=0.054  Score=48.87  Aligned_cols=54  Identities=17%  Similarity=0.283  Sum_probs=32.6

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++-+++||.--.  |...-..+...+..- ..|..||++|.+......
T Consensus       146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~  202 (214)
T TIGR02673       146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR  202 (214)
T ss_pred             HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            344455556778899999866  554444554444321 235668888887665544

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK06547 hypothetical protein; Provisional

Probab=96.08  E-value=0.0086  Score=52.39  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ....+|+|.|++|+||||+|+.+.+.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999999873

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.08  E-value=0.03  Score=49.54  Aligned_cols=20  Identities=20%  Similarity=0.185  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|.|++|+||||+|+.+..
T Consensus         2 I~i~G~pGsGKst~a~~La~   21 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAK   21 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999987

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.05  E-value=0.02  Score=52.96  Aligned_cols=91  Identities=10%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc---------CCCCCHHHH--HHHHHHHcCCCCCCc--cc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV---------SLDYDFRRI--LDDIIKSVIPPSRVS--VI  273 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---------s~~~~~~~~--~~~i~~~l~~~~~~~--~~  273 (401)
                      ++...|.++||+|+||||..++++.+.  ...+....-|++         .-+.++.+.  .++.+++........  ..
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts   94 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS   94 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence            356688899999999999999999843  333332222332         223345443  567777766554332  00


Q ss_pred             c---CcCHHHHHHHHHHHcCCceEEEEEeC
Q 015752          274 I---GEDYQLKKSILRDYLTNKKYFIVLDD  300 (401)
Q Consensus       274 ~---~~~~~~l~~~l~~~L~~kr~LlVlDd  300 (401)
                      .   ....++.+..+.+.-..-.| +++|-
T Consensus        95 LNLF~tk~dqv~~~iek~~~~~~~-~liDT  123 (366)
T KOG1532|consen   95 LNLFATKFDQVIELIEKRAEEFDY-VLIDT  123 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCE-EEEcC
Confidence            0   01334455555554433334 44454

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.05  E-value=0.054  Score=49.86  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G   50 (239)
T cd03296          29 ELVALLGPSGSGKTTLLRLIAG   50 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999975

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.05  E-value=0.097  Score=48.08  Aligned_cols=52  Identities=17%  Similarity=0.204  Sum_probs=33.7

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      +...+..++=++++|+...  |......+...+.....|..||++|.+......
T Consensus       150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~  203 (238)
T cd03249         150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRN  203 (238)
T ss_pred             HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence            4444556677999999876  655555555544332246678888888776653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR00235 udk uridine kinase

Probab=96.04  E-value=0.0058  Score=55.11  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +...+|+|+|++|+|||||++.+..
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999999986

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14528 adenylate kinase; Provisional

Probab=96.04  E-value=0.017  Score=51.12  Aligned_cols=22  Identities=14%  Similarity=0.074  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|.|++|+||||+|+.+..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~   23 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCE   23 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999876

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.04  E-value=0.0046  Score=45.26  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|+|.|.+|+||||+++.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999887

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.04  E-value=0.047  Score=50.78  Aligned_cols=55  Identities=15%  Similarity=0.263  Sum_probs=34.4

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...+..++-++++|+.-.  |...-..+...+..-  ..|..||++|.+...+...
T Consensus       162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~  220 (255)
T PRK11300        162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI  220 (255)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHh
Confidence            344455566788999999866  544444444444321  2266788888888766553

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.03  E-value=0.081  Score=49.60  Aligned_cols=51  Identities=10%  Similarity=-0.013  Sum_probs=33.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      -.++.|.|.+|+||||++.++..... ..+=..++|++...+  ..++...+..
T Consensus        30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~   80 (271)
T cd01122          30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLG   80 (271)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHH
Confidence            35788999999999999998876321 221246788876553  3344444433

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.03  E-value=0.088  Score=48.28  Aligned_cols=54  Identities=11%  Similarity=0.212  Sum_probs=35.3

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++-+++||....  |......+...+.....|..||++|.+......
T Consensus       146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~  201 (236)
T cd03253         146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN  201 (236)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence            345555667788999999876  655555555544432226678888888776643

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03839 putative kinase; Provisional

Probab=96.01  E-value=0.0044  Score=54.44  Aligned_cols=21  Identities=24%  Similarity=0.297  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|.|.|++|+||||+++.+++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999988

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.01  E-value=0.07  Score=49.82  Aligned_cols=47  Identities=23%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             CceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          291 NKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       291 ~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .++-+++||.--.  |......+...+..-  ..|..||++|.+.......
T Consensus       157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~  207 (258)
T PRK13548        157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARY  207 (258)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence            4778999999866  555555555444431  2356788888887765543

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.01  E-value=0.068  Score=53.65  Aligned_cols=39  Identities=21%  Similarity=0.136  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV  247 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v  247 (401)
                      .++++++|++|+||||++.+++........-..+..++.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~  259 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL  259 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            358999999999999988887652220122234555554

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.00  E-value=0.026  Score=58.74  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=50.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      .-++..++|++|+||||||.-++++.    .| .++=|++|..-+...+-..|...+....                   
T Consensus       325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-------------------  380 (877)
T KOG1969|consen  325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS-------------------  380 (877)
T ss_pred             ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-------------------
Confidence            45789999999999999999998732    22 3566788887766666555555443321                   


Q ss_pred             Hc--CCceEEEEEeCCCC
Q 015752          288 YL--TNKKYFIVLDDVFD  303 (401)
Q Consensus       288 ~L--~~kr~LlVlDdv~~  303 (401)
                      .+  .+++.-||+|.+..
T Consensus       381 ~l~adsrP~CLViDEIDG  398 (877)
T KOG1969|consen  381 VLDADSRPVCLVIDEIDG  398 (877)
T ss_pred             ccccCCCcceEEEecccC
Confidence            12  15778899999866

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.056  Score=55.49  Aligned_cols=155  Identities=15%  Similarity=0.124  Sum_probs=88.7

Q ss_pred             CccccccccHHHHHHH---HhcC--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDL---LIEG--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~---L~~~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.+...+.+.+.   ....        -.....+.++|++|.|||.||+.+++  .....|-.+.+-         
T Consensus       242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~---------  310 (494)
T COG0464         242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS---------  310 (494)
T ss_pred             ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH---------
Confidence            5566655555444433   3321        13455888999999999999999998  455455332221         


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--C---c-------hhHHHHHhhCCCCC--C
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--D---S-------EIWIDVEELLPDDE--N  320 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~---~-------~~~~~l~~~l~~~~--~  320 (401)
                          +++....+.         ....+...+....+..++.|.+|.+..  .   .       .....+...+....  .
T Consensus       311 ----~l~sk~vGe---------sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~  377 (494)
T COG0464         311 ----ELLSKWVGE---------SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE  377 (494)
T ss_pred             ----HHhccccch---------HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence                222222111         444555555555567899999999854  1   0       23344555554322  2


Q ss_pred             CcEEEEecCChhHHhhc--hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          321 GSRVFITVTDPDLLASL--EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       321 gs~iivTTR~~~v~~~~--~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +-.||-||..+......  +.+..+.. .+.      +-  +.++..+.|..+..
T Consensus       378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~------~p--d~~~r~~i~~~~~~  424 (494)
T COG0464         378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVP------LP--DLEERLEIFKIHLR  424 (494)
T ss_pred             ceEEEecCCCccccCHhhcccCccceEeecC------CC--CHHHHHHHHHHHhc
Confidence            33345555555443321  11123444 666      55  89999999999986

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.99  E-value=0.077  Score=48.53  Aligned_cols=54  Identities=19%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||+.-.  |......+...+..-  ..|..||++|.+.+.....
T Consensus       135 ~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~  192 (230)
T TIGR02770       135 MIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARI  192 (230)
T ss_pred             HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444555667999999866  555545554444432  2356788888887665443

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.99  E-value=0.078  Score=49.87  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++-+++||..-.  |......+...+..- ..|..||++|.+......
T Consensus       145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  201 (271)
T PRK13638        145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYE  201 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            344555566778999999866  555445554444331 235678888888776544

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=95.99  E-value=0.044  Score=50.34  Aligned_cols=49  Identities=10%  Similarity=0.070  Sum_probs=31.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDI  260 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i  260 (401)
                      .-.++.|.|.+|+||||||.+++... .+.. ..+++++...  +..++++.+
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~   71 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM   71 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence            34589999999999999986665421 1222 3456666333  445555555

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.98  E-value=0.017  Score=52.40  Aligned_cols=53  Identities=11%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      +...+..++-++++|+--.  |......+...+... ..|..||++|.+......+
T Consensus       143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  198 (222)
T cd03224         143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI  198 (222)
T ss_pred             HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            3344455677899999866  555555555544331 2467889999888765443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=95.98  E-value=0.069  Score=48.92  Aligned_cols=54  Identities=19%  Similarity=0.215  Sum_probs=34.6

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+..++=+++||+.-.  |......+...+..-  ..|..||++|.+......
T Consensus       139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~  196 (232)
T cd03300         139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALT  196 (232)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            344555566778899999866  665556665555432  226678888888765443

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.97  E-value=0.097  Score=47.65  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=32.5

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      -.+...+-.++-+++||+-..  |......+...+..-..+..||++|.+.....
T Consensus       159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~  213 (226)
T cd03248         159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE  213 (226)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence            334455556778999999866  55555555444433222356888888776654

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.97  E-value=0.061  Score=48.80  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=31.9

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA  335 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~  335 (401)
                      .+...+..++=+++||.--.  |......+...+..-  ..|..||++|.+.....
T Consensus       151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~  206 (221)
T TIGR02211       151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK  206 (221)
T ss_pred             HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence            33444445666899999866  555555555544421  23567888888876654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=95.96  E-value=0.015  Score=56.58  Aligned_cols=55  Identities=20%  Similarity=0.172  Sum_probs=34.1

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++=+++||.--.  |+..-..+...+.. ...|..||+||.+.+.+..+
T Consensus       181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~  238 (340)
T PRK13536        181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL  238 (340)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence            344455567788999999866  54433333333322 12367799999988765543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.96  E-value=0.047  Score=49.92  Aligned_cols=53  Identities=23%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-+++||+--.  |...-+.+...+.. ...|..||++|.+.+....
T Consensus       143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~  198 (232)
T cd03218         143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLS  198 (232)
T ss_pred             HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            44555566778999999866  44433444333322 1235678888888764444

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PTZ00494 tuzin-like protein; Provisional

Probab=95.95  E-value=0.2  Score=49.86  Aligned_cols=165  Identities=13%  Similarity=0.081  Sum_probs=92.9

Q ss_pred             CccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      ..+|.|+.+-.-+.+.|.. +...++++.+.|.-|.||++|.+.....+..     ..++|.+....   +-++.+++.+
T Consensus       371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsVVKAL  442 (664)
T PTZ00494        371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSVVRAL  442 (664)
T ss_pred             ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHHHHHh
Confidence            6788888876666666654 4456899999999999999999987763222     35667776654   4677888999


Q ss_pred             CCCCCCccccCcCHH----HHHHHHHHHcCCceEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChhHHhhch
Q 015752          265 IPPSRVSVIIGEDYQ----LKKSILRDYLTNKKYFIVLDDVFD-D-SEIWIDVEELLPDDENGSRVFITVTDPDLLASLE  338 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~----~l~~~l~~~L~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~  338 (401)
                      +.+.-+  ... |.-    +....-+....|+.-+||+-=-.- + ...+.+.. .|.+...-|.|++----+++....-
T Consensus       443 gV~nve--~CG-DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~  518 (664)
T PTZ00494        443 GVSNVE--VCG-DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNV  518 (664)
T ss_pred             CCCChh--hhc-cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhc
Confidence            887432  112 221    111222223456666777643211 0 11222221 2333445677877555444322210


Q ss_pred             hCCCcce-ecccccCCCCCCCChHHHHHHHHHh
Q 015752          339 MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILH  370 (401)
Q Consensus       339 ~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~  370 (401)
                      .-..-.. .++      ++  +..+|.+.-...
T Consensus       519 ~LPRLDFy~VP------nF--Sr~QAf~YtqH~  543 (664)
T PTZ00494        519 SSRRLDFYCIP------PF--SRRQAFAYAEHT  543 (664)
T ss_pred             cCccceeEecC------Cc--CHHHHHHHHhcc
Confidence            0011122 555      77  887777665443

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=95.95  E-value=0.099  Score=50.07  Aligned_cols=54  Identities=20%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...|..++-+++||.--.  |+..-..+...+.. ...|..||++|.+.+.+..+
T Consensus       145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~  201 (303)
T TIGR01288       145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL  201 (303)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence            34455567788999999866  54433333333322 12366789999888765543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.94  E-value=0.084  Score=48.59  Aligned_cols=53  Identities=19%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      +...+..++-+++||..-.  |......+...+... ..|..||++|.+.......
T Consensus       147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  202 (240)
T PRK09493        147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV  202 (240)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            3444445667999999866  555555555444321 2356788888887766543

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.93  E-value=0.028  Score=51.29  Aligned_cols=21  Identities=19%  Similarity=0.128  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|+|.|.+|+||||+|+.+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHH
Confidence            589999999999999999986

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.93  E-value=0.092  Score=49.33  Aligned_cols=57  Identities=21%  Similarity=0.288  Sum_probs=35.1

Q ss_pred             HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      ...-.+...+-.++-+|+||+--.  |......+...+...  ..++.||++|.+......
T Consensus       157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~  217 (268)
T PRK10419        157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVER  217 (268)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHH
Confidence            333445555667788999999866  555444554444322  226678888888766554

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.93  E-value=0.052  Score=50.60  Aligned_cols=55  Identities=20%  Similarity=0.211  Sum_probs=35.0

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+.+.+..++-+++||..-.  |......+...+...  ..|..||++|.+.......
T Consensus       160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~  218 (258)
T PRK11701        160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL  218 (258)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence            344455566788999999866  555555555444321  2266788888888776543

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.93  E-value=0.062  Score=51.12  Aligned_cols=54  Identities=17%  Similarity=0.153  Sum_probs=34.2

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      -.|...|..++-++++|+...  |...-..+...+..-  ..|..||++|.+.+....
T Consensus       154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~  211 (290)
T PRK13634        154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAAR  211 (290)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            445556667888999999876  554444444444321  236678888888776544

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.92  E-value=0.03  Score=52.03  Aligned_cols=21  Identities=14%  Similarity=0.347  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|.++|++|+||||+|+.+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~   21 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAK   21 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            377999999999999999886

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.91  E-value=0.055  Score=49.92  Aligned_cols=53  Identities=19%  Similarity=0.228  Sum_probs=32.3

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      +...+-.++-+++||+.-.  |...-..+...+...  ..|..||++|.+.......
T Consensus       146 laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~  202 (242)
T cd03295         146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRL  202 (242)
T ss_pred             HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence            4444556677999999866  544444444444332  2256788888888755443

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.91  E-value=0.061  Score=49.39  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=33.6

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      +...+-.++-+++||+...  |......+...+..-..|..||++|.+......
T Consensus       149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~  202 (237)
T cd03252         149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN  202 (237)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence            3444445677999999876  655555555444332236678888888877643

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.90  E-value=0.071  Score=50.31  Aligned_cols=54  Identities=28%  Similarity=0.305  Sum_probs=33.6

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+...+=++++|+...  |......+...+..- ..|..||++|.+......
T Consensus       146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~  202 (275)
T PRK13639        146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPV  202 (275)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            334445556778899999877  665555555554431 235667777777665443

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=95.89  E-value=0.12  Score=48.50  Aligned_cols=54  Identities=11%  Similarity=0.189  Sum_probs=33.1

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+++||+.-.  |...-..+...+.. ...|..||++|.+......+
T Consensus       153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~  209 (264)
T PRK13546        153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQF  209 (264)
T ss_pred             HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            34555566778999999866  54433333333322 12467788899887765543

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=95.89  E-value=0.081  Score=49.43  Aligned_cols=54  Identities=22%  Similarity=0.227  Sum_probs=34.5

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-+|+||+--+  |......+...+..-  ..|..||++|.+......+
T Consensus       162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~  219 (262)
T PRK09984        162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRY  219 (262)
T ss_pred             HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444556677999999866  555555555555432  2367788888888765443

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.89  E-value=0.03  Score=51.98  Aligned_cols=192  Identities=10%  Similarity=0.121  Sum_probs=94.7

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHh----hcccCcccccCeEEEEEcCCCC-CHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADT----YNNNHVKFYFDCHAWVRVSLDY-DFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v----~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i  260 (401)
                      ..+.++++....+.....  .....-..++|+.|.||-|.+..+    |.-.-.+-.-+...|.+-|..- .+..+-.. 
T Consensus        13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~-   89 (351)
T KOG2035|consen   13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN-   89 (351)
T ss_pred             hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc-
Confidence            345556666666666544  345677889999999999866544    4321122233445555433320 00000000 


Q ss_pred             HHHcCCCCCCccccCc-CHHHHHHHHHHHcC--------CceE-EEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC
Q 015752          261 IKSVIPPSRVSVIIGE-DYQLKKSILRDYLT--------NKKY-FIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVT  329 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--------~kr~-LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR  329 (401)
                       .++....+   +.+. |--.+++.+++.-+        .+.| ++|+-.+.. ..++-..|+...-.=.+.+|+|+...
T Consensus        90 -yHlEitPS---DaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cn  165 (351)
T KOG2035|consen   90 -YHLEITPS---DAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCN  165 (351)
T ss_pred             -ceEEeChh---hcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEec
Confidence             00000000   1122 33333333333322        2344 445555433 34444555544333244677776322


Q ss_pred             Ch-hHHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          330 DP-DLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       330 ~~-~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      +. .+...+. ...-.+++.      ..  +++|-...+++.+-.   ++..- |  ++++.+|+ +|++.|
T Consensus       166 s~SriIepIr-SRCl~iRvp------ap--s~eeI~~vl~~v~~k---E~l~l-p--~~~l~rIa~kS~~nL  222 (351)
T KOG2035|consen  166 STSRIIEPIR-SRCLFIRVP------AP--SDEEITSVLSKVLKK---EGLQL-P--KELLKRIAEKSNRNL  222 (351)
T ss_pred             CcccchhHHh-hheeEEeCC------CC--CHHHHHHHHHHHHHH---hcccC-c--HHHHHHHHHHhcccH
Confidence            21 1222220 011223888      78  999999999998842   22222 2  78999999 998876

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.89  E-value=0.046  Score=50.08  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.++|+|++|+|||||.+.+..
T Consensus        30 EfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999999964

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=95.88  E-value=0.07  Score=54.69  Aligned_cols=53  Identities=23%  Similarity=0.404  Sum_probs=31.7

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~  336 (401)
                      .+...|..++=+++||.-..  |...-..+...+.. ...|..||++|.+......
T Consensus       145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~  200 (490)
T PRK10938        145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPD  200 (490)
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence            34444455677899999876  55444444444332 1236678888888765544

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=95.87  E-value=0.01  Score=50.55  Aligned_cols=44  Identities=18%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPP  267 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~  267 (401)
                      +|.|.|++|+||||+|+.+.++.-++.             .+.-.++++++...+..
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------------vsaG~iFR~~A~e~gms   45 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKL-------------VSAGTIFREMARERGMS   45 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCce-------------eeccHHHHHHHHHcCCC
Confidence            689999999999999999998433321             12345777888777664

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=95.87  E-value=0.059  Score=53.14  Aligned_cols=55  Identities=13%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|.+.|..++-+|+||.--.  |...-..+...+..-  ..|..||++|.+.+.+..+
T Consensus       142 vaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~  200 (369)
T PRK11000        142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL  200 (369)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHh
Confidence            345555667788999999866  544444444433321  2256788888887655443

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.87  E-value=0.081  Score=45.01  Aligned_cols=21  Identities=19%  Similarity=0.183  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++.|+|.+|+||||||+.+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~   21 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEE   21 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999887

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.87  E-value=0.064  Score=49.42  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|+|..|+|||||.+.+..-
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895         30 EIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999999763

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=95.87  E-value=0.087  Score=48.39  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|+|..|+|||||.+.+..-
T Consensus        26 e~~~i~G~nG~GKStLl~~l~G~   48 (235)
T cd03299          26 DYFVILGPTGSGKSVLLETIAGF   48 (235)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            58899999999999999999653

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.87  E-value=0.17  Score=50.62  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++++|+.|+||||++.++..
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999987765

>TIGR00416 sms DNA repair protein RadA

Probab=95.87  E-value=0.054  Score=54.86  Aligned_cols=101  Identities=15%  Similarity=0.081  Sum_probs=56.4

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccc
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI  273 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~  273 (401)
                      ....+-+.|..+=..-.++.|.|.+|+|||||+.++...  ....-..++|++....  ...+.. -+..++.......-
T Consensus        79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~  153 (454)
T TIGR00416        79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYV  153 (454)
T ss_pred             CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEE
Confidence            345555655444344578999999999999999998663  2222235778776543  333222 22334332111111


Q ss_pred             cCc-CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752          274 IGE-DYQLKKSILRDYLTNKKYFIVLDDVF  302 (401)
Q Consensus       274 ~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~  302 (401)
                      ... +.+.+...+.+   .+.-++|+|.+-
T Consensus       154 ~~e~~~~~I~~~i~~---~~~~~vVIDSIq  180 (454)
T TIGR00416       154 LSETNWEQICANIEE---ENPQACVIDSIQ  180 (454)
T ss_pred             cCCCCHHHHHHHHHh---cCCcEEEEecch
Confidence            122 45555444433   355689999874

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.86  E-value=0.13  Score=48.98  Aligned_cols=54  Identities=20%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++-+|+||..-.  |......+...+.. ...|..||++|.+.+.+..
T Consensus       153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~  209 (288)
T PRK13643        153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD  209 (288)
T ss_pred             HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            344555556777999999866  55555555544432 1236679999998875543

>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]

Probab=95.86  E-value=0.057  Score=50.66  Aligned_cols=119  Identities=13%  Similarity=0.042  Sum_probs=80.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      ++|+|-... .+++.++......-+.+.++|+.|+|||+-++.+++.      .+...-+..+..++...++..+.....
T Consensus        72 ~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~  144 (297)
T COG2842          72 PDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAF  144 (297)
T ss_pred             ccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHh
Confidence            566664443 3344444433333448889999999999999999882      233334467777777777777666655


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCC
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPD  317 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~  317 (401)
                      .....      ........+...+.+..-+|+.|+-.. ....++.|+.....
T Consensus       145 ~~~~~------~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~  191 (297)
T COG2842         145 GATDG------TINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK  191 (297)
T ss_pred             cccch------hHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence            44211      667777778888889999999999876 56777777765443

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=95.85  E-value=0.036  Score=59.18  Aligned_cols=98  Identities=17%  Similarity=0.070  Sum_probs=62.4

Q ss_pred             HHHHHh-cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc
Q 015752          198 LFDLLI-EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE  276 (401)
Q Consensus       198 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~  276 (401)
                      |-..|- .+=..-+++-|.|.+|+|||||+.+++..  ....-..++|+.....++.     ..+++++.+.....-...
T Consensus        48 LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~  120 (790)
T PRK09519         48 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQP  120 (790)
T ss_pred             HHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecC
Confidence            444443 33344678889999999999999876652  2223356799988777774     366777665332211111


Q ss_pred             -CHHHHHHHHHHHcC-CceEEEEEeCCC
Q 015752          277 -DYQLKKSILRDYLT-NKKYFIVLDDVF  302 (401)
Q Consensus       277 -~~~~l~~~l~~~L~-~kr~LlVlDdv~  302 (401)
                       ..++....+...++ ++--|||+|.+-
T Consensus       121 ~~~E~~l~~i~~lv~~~~~~LVVIDSI~  148 (790)
T PRK09519        121 DTGEQALEIADMLIRSGALDIVVIDSVA  148 (790)
T ss_pred             CCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence             44556666666654 467789999985

>PRK13409 putative ATPase RIL; Provisional

Probab=95.85  E-value=0.061  Score=56.43  Aligned_cols=154  Identities=15%  Similarity=0.184  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--ccCe-EEEEEcCCC------CCHHHH-------------HHHHHHHcCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YFDC-HAWVRVSLD------YDFRRI-------------LDDIIKSVIP  266 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~-~~wv~vs~~------~~~~~~-------------~~~i~~~l~~  266 (401)
                      .+++|+|..|+|||||++.++...... +  .++. +.+  +.+.      .++.+.             ..++++.++.
T Consensus       366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l  443 (590)
T PRK13409        366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL  443 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence            589999999999999999998632111 1  0111 111  1221      122222             2333444433


Q ss_pred             CCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhchhC
Q 015752          267 PSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASLEME  340 (401)
Q Consensus       267 ~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~~~~  340 (401)
                      .......... + -+...-.+...|..++-+++||.--.  |...-..+...+..-  ..|..||++|.+...+...   
T Consensus       444 ~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~---  520 (590)
T PRK13409        444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI---  520 (590)
T ss_pred             HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh---
Confidence            2111112222 2 23333345556667888999999765  544444444444321  2356788888887766554   


Q ss_pred             CCcce-eccccc-----CCCCCCCChHHHHHHHHHhh
Q 015752          341 NGEKI-RLDSVL-----FGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       341 ~~~~~-~l~~~~-----~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      . +++ .++.-.     ...|+  +..+..+-|.+..
T Consensus       521 a-Drvivl~~~~~~~g~~~~~~--~~~~~~~~~l~~~  554 (590)
T PRK13409        521 S-DRLMVFEGEPGKHGHASGPM--DMREGMNRFLKEL  554 (590)
T ss_pred             C-CEEEEEcCcceeeeecCCch--hHHHHHHHHHHHc
Confidence            2 222 332111     11234  4567777777765

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=95.85  E-value=0.12  Score=48.11  Aligned_cols=55  Identities=13%  Similarity=0.219  Sum_probs=35.5

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++-+++||.--.  |......+...+... ..|..||++|.+.......
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~  218 (257)
T PRK10619        161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV  218 (257)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            344555556777999999866  555555555544332 2367788888888776653

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=95.84  E-value=0.072  Score=54.87  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          277 DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       277 ~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      .-....-.|.+.|-.++=+|+||.--+  |.+...-|..+|.. -+| .+||.|.++.....+
T Consensus       156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V  216 (530)
T COG0488         156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV  216 (530)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH
Confidence            345566677777788888999999766  55555556666653 235 699999999888776

>PRK11823 DNA repair protein RadA; Provisional

Probab=95.84  E-value=0.042  Score=55.57  Aligned_cols=99  Identities=18%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccC
Q 015752          196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIG  275 (401)
Q Consensus       196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~  275 (401)
                      ..+-+.|..+=..-.++.|.|.+|+|||||+.+++....  ..-..++|++....+  ..+. .-++.++.......-..
T Consensus        67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees~--~qi~-~ra~rlg~~~~~l~~~~  141 (446)
T PRK11823         67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEESA--SQIK-LRAERLGLPSDNLYLLA  141 (446)
T ss_pred             HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccccH--HHHH-HHHHHcCCChhcEEEeC
Confidence            444454544433456899999999999999999987322  222357787765433  3332 22445543221110111


Q ss_pred             c-CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752          276 E-DYQLKKSILRDYLTNKKYFIVLDDVF  302 (401)
Q Consensus       276 ~-~~~~l~~~l~~~L~~kr~LlVlDdv~  302 (401)
                      . +.+.+...+.+   .+.-+||+|.+.
T Consensus       142 e~~l~~i~~~i~~---~~~~lVVIDSIq  166 (446)
T PRK11823        142 ETNLEAILATIEE---EKPDLVVIDSIQ  166 (446)
T ss_pred             CCCHHHHHHHHHh---hCCCEEEEechh
Confidence            1 44444444432   356689999974

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.84  E-value=0.08  Score=49.92  Aligned_cols=53  Identities=23%  Similarity=0.289  Sum_probs=33.2

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLA  335 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~  335 (401)
                      -.+...+..++-+++||.--.  |...-..+...+.. ...|..||++|.+.+...
T Consensus       145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~  200 (274)
T PRK13644        145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH  200 (274)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence            344555666778999999866  54444444443322 123677888888877664

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=95.84  E-value=0.55  Score=47.68  Aligned_cols=148  Identities=14%  Similarity=0.075  Sum_probs=81.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc---------cccC-----------eEEEE
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK---------FYFD-----------CHAWV  245 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------~~F~-----------~~~wv  245 (401)
                      ..-+|.++.. .|...|.-+-+--.-|+++|+.|+|||||.+.++-+..-.         .+|.           ...|.
T Consensus       394 nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~  472 (614)
T KOG0927|consen  394 NVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSS  472 (614)
T ss_pred             ccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhH
Confidence            3345666555 4444443332233467899999999999999998763211         1111           01111


Q ss_pred             E--c---CCCCCHHHHHHHHHHHcCCCCCCc-cccCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC--CchhHHHHHhhC
Q 015752          246 R--V---SLDYDFRRILDDIIKSVIPPSRVS-VIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD--DSEIWIDVEELL  315 (401)
Q Consensus       246 ~--v---s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~~l~~~l  315 (401)
                      .  +   -.+-...+..+.|+...+...... ....+ +..+....+..+ .-..+.|||||.--+  |.+..+.+..++
T Consensus       473 le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeai  552 (614)
T KOG0927|consen  473 LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAI  552 (614)
T ss_pred             HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHH
Confidence            0  0   001234556777777777653221 12222 223333333333 346788999999876  666677777777


Q ss_pred             CCCCCCcEEEEecCChhHHhh
Q 015752          316 PDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       316 ~~~~~gs~iivTTR~~~v~~~  336 (401)
                      .+- .|+ +|++|.+-.+...
T Consensus       553 Ne~-~Gg-vv~vSHDfrlI~q  571 (614)
T KOG0927|consen  553 NEF-PGG-VVLVSHDFRLISQ  571 (614)
T ss_pred             hcc-CCc-eeeeechhhHHHH
Confidence            543 344 6666776544433

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.83  E-value=0.061  Score=49.10  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=34.2

Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      .-.|...|..++-+++||+-..  |....+.+...+..-..+..||++|.+.....
T Consensus       147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~  202 (229)
T cd03254         147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK  202 (229)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence            3344555567778999999876  55554555444433223667888888877654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.82  E-value=0.072  Score=50.46  Aligned_cols=54  Identities=19%  Similarity=0.142  Sum_probs=35.4

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++=++++|+-..  |......+...+..-  ..|..||++|.+.+....
T Consensus       152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~  209 (282)
T PRK13640        152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM  209 (282)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence            334455556778999999877  666556665555431  236778888888776543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=95.82  E-value=0.12  Score=54.76  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=35.6

Q ss_pred             HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      ...-.|...|-.++=+|+||.--+  |...-..|...+...  +..||++|.+......+
T Consensus       155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~  212 (638)
T PRK10636        155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPI  212 (638)
T ss_pred             HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHh
Confidence            333445555667778999999876  544444455555432  23588888888776654

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.82  E-value=0.13  Score=51.49  Aligned_cols=24  Identities=17%  Similarity=0.120  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.++|.+|+||||++.+++.
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~  122 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAY  122 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999988875

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.82  E-value=0.01  Score=50.88  Aligned_cols=36  Identities=14%  Similarity=-0.132  Sum_probs=27.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR  246 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  246 (401)
                      ..+|-|.|.+|+||||||+.+..  ++...-..+.++.
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD   37 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD   37 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence            36899999999999999999988  5555445555553

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=95.80  E-value=0.017  Score=51.68  Aligned_cols=21  Identities=19%  Similarity=0.015  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhh
Q 015752          210 SVVAILDSGGFDKTAFAADTY  230 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~  230 (401)
                      ++++|.|+.|.|||||.+.+.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            689999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.79  E-value=0.14  Score=47.36  Aligned_cols=53  Identities=15%  Similarity=0.165  Sum_probs=32.7

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-+++||+.-.  |......+...+..-..+..||++|.+......
T Consensus       156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~  210 (250)
T PRK14247        156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAAR  210 (250)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            33444556778999999866  555444444444332235678888888776544

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.79  E-value=0.0082  Score=54.12  Aligned_cols=31  Identities=23%  Similarity=0.218  Sum_probs=26.0

Q ss_pred             HHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          201 LLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       201 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      |+..+....+.|.|+|++|+|||||++.+..
T Consensus         5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738          5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            4555556778999999999999999999976

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=95.78  E-value=0.082  Score=50.70  Aligned_cols=54  Identities=19%  Similarity=0.323  Sum_probs=32.7

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++-+|+||..-.  |...-..+...+.. ...|..||++|.+.+.+..
T Consensus       174 valA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~  230 (305)
T PRK13651        174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE  230 (305)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence            345555667788999999866  54433344333322 1236678888888764433

>PRK13409 putative ATPase RIL; Provisional

Probab=95.78  E-value=0.054  Score=56.80  Aligned_cols=23  Identities=26%  Similarity=0.195  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        99 Gev~gLvG~NGaGKSTLlkiL~G  121 (590)
T PRK13409         99 GKVTGILGPNGIGKTTAVKILSG  121 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35999999999999999999976

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=95.78  E-value=0.0041  Score=55.09  Aligned_cols=120  Identities=12%  Similarity=0.082  Sum_probs=57.8

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT  290 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~  290 (401)
                      ++.|.|+.|.||||+.+.+.-.... .+-.+.+|..-..    -..+..++..++.......... ....-...+...+.
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s-~fs~~~~~l~~~l~   74 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIM-AQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLS-TFMVEMKETANILK   74 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHH-HHhCCCeeehheE----ecccceEEEEeCCCCchhcccc-HHHHHHHHHHHHHH
Confidence            4679999999999999998732111 1111111111000    0001111111111110000111 12222223444443


Q ss_pred             --CceEEEEEeCCCC--CchhHHH----HHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          291 --NKKYFIVLDDVFD--DSEIWID----VEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       291 --~kr~LlVlDdv~~--~~~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                        +++-|+++|..-.  |+.+-..    +...+.. ..++.+|++|...++...+
T Consensus        75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~  128 (185)
T smart00534       75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA  128 (185)
T ss_pred             hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence              4889999999866  4332222    2233322 2367899999999887765

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=95.77  E-value=0.04  Score=51.60  Aligned_cols=94  Identities=15%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCc--ccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--cccCc-C-----H
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHV--KFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--VIIGE-D-----Y  278 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~~~~~-~-----~  278 (401)
                      .-++|.|-.|+|||+|+..+.++..+  +.+-+.++++-+++... +.+++.++...-.....-.  ...++ .     .
T Consensus        70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a  149 (276)
T cd01135          70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT  149 (276)
T ss_pred             CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence            35689999999999999988874331  22346788888888654 5556666555322111000  00010 1     1


Q ss_pred             HHHHHHHHHHc--C-CceEEEEEeCCCC
Q 015752          279 QLKKSILRDYL--T-NKKYFIVLDDVFD  303 (401)
Q Consensus       279 ~~l~~~l~~~L--~-~kr~LlVlDdv~~  303 (401)
                      ....-.+.+++  + ++++|+++||+-.
T Consensus       150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr  177 (276)
T cd01135         150 PRMALTTAEYLAYEKGKHVLVILTDMTN  177 (276)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence            12223344554  3 7999999999844

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.76  E-value=0.078  Score=49.69  Aligned_cols=55  Identities=20%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .-.+...+..++-+++||+--.  |...-..+...+..-  ..|..||++|.+......
T Consensus       155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~  213 (265)
T PRK10575        155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR  213 (265)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            3344555566788999999866  555544444444321  225678888888775543

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.75  E-value=0.013  Score=48.88  Aligned_cols=41  Identities=12%  Similarity=0.040  Sum_probs=29.2

Q ss_pred             ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc
Q 015752          193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      ++..++.+.|...-..-.+|.+.|.-|+||||+++.++...
T Consensus         6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150         6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            34445555554322334589999999999999999998843

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=95.75  E-value=0.017  Score=56.65  Aligned_cols=57  Identities=7%  Similarity=0.159  Sum_probs=34.0

Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~  337 (401)
                      ..-.|.+.|..++-+++||.--+  |...-+.+...+..  ...|..+|++|.+...+..+
T Consensus       141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l  201 (356)
T PRK11650        141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTL  201 (356)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            33445555667888999999866  44333334333322  12366788888887655443

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=95.75  E-value=0.029  Score=55.99  Aligned_cols=89  Identities=9%  Similarity=0.107  Sum_probs=51.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--cccCc-C-----HHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--VIIGE-D-----YQL  280 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~~~~~-~-----~~~  280 (401)
                      ..++|+|..|+|||||++.+++.  .  ..+.++..-+++... +.+++.+++..-.....-.  ...+. .     ...
T Consensus       163 qrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~  238 (444)
T PRK08972        163 QRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE  238 (444)
T ss_pred             CEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence            46899999999999999999862  1  224566667777654 3445555544322111000  00010 1     111


Q ss_pred             HHHHHHHHc--CCceEEEEEeCCC
Q 015752          281 KKSILRDYL--TNKKYFIVLDDVF  302 (401)
Q Consensus       281 l~~~l~~~L--~~kr~LlVlDdv~  302 (401)
                      ..-.+.+++  +|+++||++||+-
T Consensus       239 ~A~tiAEyfrd~G~~VLl~~DslT  262 (444)
T PRK08972        239 TATTIAEYFRDQGLNVLLLMDSLT  262 (444)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcChH
Confidence            222344444  6899999999984

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.75  E-value=0.069  Score=48.77  Aligned_cols=54  Identities=17%  Similarity=0.292  Sum_probs=33.1

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...+..++-++++|+.-.  |......+...+..-  ..|..||++|.+.+.....
T Consensus       141 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~  198 (230)
T TIGR03410       141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL  198 (230)
T ss_pred             HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence            34444555678899999866  555555555444431  1256788888887765543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.74  E-value=0.13  Score=47.61  Aligned_cols=53  Identities=17%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      +...+..++-++++|+--.  |......+...+..-..+..||++|.+.......
T Consensus       155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~  209 (247)
T TIGR00972       155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARI  209 (247)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHh
Confidence            4444555677999999865  5554455544443322235678888887755443

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.34  Score=44.45  Aligned_cols=173  Identities=16%  Similarity=0.189  Sum_probs=90.8

Q ss_pred             ccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHH
Q 015752          189 SHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRIL  257 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~  257 (401)
                      -|.+..+.+|.+.+.-.           =.+++-+.++|++|.|||-||+.+++       ..++.|+.+|...    +.
T Consensus       150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgse----lv  218 (404)
T KOG0728|consen  150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGSE----LV  218 (404)
T ss_pred             ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechHH----HH
Confidence            34677777776655321           23566778999999999999999998       3445667777642    22


Q ss_pred             HHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC-CceEEEEEeCCCC--C----------c---hhHHHHHhhCCC--CC
Q 015752          258 DDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD--D----------S---EIWIDVEELLPD--DE  319 (401)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~--~----------~---~~~~~l~~~l~~--~~  319 (401)
                      +..+    +.          ...+...+.-..+ .-+..|.+|.+.+  .          .   ...-.|...+..  ..
T Consensus       219 qk~i----ge----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat  284 (404)
T KOG0728|consen  219 QKYI----GE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT  284 (404)
T ss_pred             HHHh----hh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence            2211    11          1112222222222 3567788888754  1          0   011223333332  24


Q ss_pred             CCcEEEEecCChhHHhhchhCCCcce--ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHhccC
Q 015752          320 NGSRVFITVTDPDLLASLEMENGEKI--RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFVLCW  396 (401)
Q Consensus       320 ~gs~iivTTR~~~v~~~~~~~~~~~~--~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~~C~  396 (401)
                      ++-+||+.|..-++....- -.+..+  .++   |+ |-  +++.-.+++.-+....   +-...-.++.||.++.-|-
T Consensus       285 knikvimatnridild~al-lrpgridrkie---fp-~p--~e~ar~~ilkihsrkm---nl~rgi~l~kiaekm~gas  353 (404)
T KOG0728|consen  285 KNIKVIMATNRIDILDPAL-LRPGRIDRKIE---FP-PP--NEEARLDILKIHSRKM---NLTRGINLRKIAEKMPGAS  353 (404)
T ss_pred             cceEEEEeccccccccHhh-cCCCccccccc---CC-CC--CHHHHHHHHHHhhhhh---chhcccCHHHHHHhCCCCc
Confidence            5678888777666543220 133444  333   32 33  4555555555444321   1111234678888877443

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=95.72  E-value=0.054  Score=49.92  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +..|+|++|+|||+||..++..
T Consensus         3 ~~ll~g~~G~GKS~lal~la~~   24 (239)
T cd01125           3 VSALVAPGGTGKSSLLLVLALA   24 (239)
T ss_pred             eeEEEcCCCCCHHHHHHHHHHH
Confidence            5678999999999999998763

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.72  E-value=0.074  Score=50.27  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=34.4

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++-+++||..-.  |......+...+..- ..|..||++|.+.+.....
T Consensus       154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~  211 (280)
T PRK13649        154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY  211 (280)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence            334445556778999999866  555545554444321 2366788888887765443

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.72  E-value=0.026  Score=53.44  Aligned_cols=54  Identities=22%  Similarity=0.205  Sum_probs=35.1

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++=+|+||+.-.  |......+...+..-  ..|..||++|.+......
T Consensus       149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~  206 (279)
T PRK13635        149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ  206 (279)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence            344455556778999999866  665556665555432  236778888888766543

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=95.71  E-value=0.094  Score=51.42  Aligned_cols=55  Identities=13%  Similarity=0.144  Sum_probs=33.2

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++-+++||.--.  |...-..+...+..-  ..|..||++|.+.+.+..+
T Consensus       140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~  198 (354)
T TIGR02142       140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRL  198 (354)
T ss_pred             HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence            344445556677999999866  554444444444321  2256688888887665443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.71  E-value=0.091  Score=47.61  Aligned_cols=51  Identities=24%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      +...+..++-+++||+--.  |......+...+..-..+..||++|.+.....
T Consensus       151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  203 (220)
T cd03245         151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD  203 (220)
T ss_pred             HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence            3344445677999999866  55555555544443222367888888887654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK04040 adenylate kinase; Provisional

Probab=95.70  E-value=0.0085  Score=53.23  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|+|++|+||||+++.+..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~   24 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALE   24 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            36899999999999999999987

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=95.69  E-value=0.16  Score=53.82  Aligned_cols=55  Identities=20%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      ..-.|...|-.++=+|+||.--+  |...-..|...+..-. + .||++|.+......+
T Consensus       163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~-tvlivsHd~~~l~~~  219 (635)
T PRK11147        163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G-SIIFISHDRSFIRNM  219 (635)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C-EEEEEeCCHHHHHHh
Confidence            33445555566778999999866  5554455555554332 4 588888888766554

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.68  E-value=0.12  Score=47.82  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=33.4

Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      ..-.+.+.+..++-+++||+.-.  |...-..+...+.....+..||++|.+.+....
T Consensus       149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~  206 (246)
T PRK14269        149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKR  206 (246)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence            33445555666778899999866  444434444443322225678888888775544

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=95.68  E-value=0.11  Score=48.75  Aligned_cols=53  Identities=23%  Similarity=0.261  Sum_probs=33.0

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+-.++-++++|..-.  |...-..+...+..-  ..|..||++|.+......
T Consensus       153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~  209 (265)
T PRK10253        153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR  209 (265)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            34444555677899999866  555555555444331  236678888888875544

>TIGR01351 adk adenylate kinases

Probab=95.68  E-value=0.051  Score=49.02  Aligned_cols=20  Identities=20%  Similarity=0.192  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|.|++|+||||+|+.+..
T Consensus         2 I~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999976

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.68  E-value=0.15  Score=48.48  Aligned_cols=55  Identities=18%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|...|..++-+|+||.-..  |...-..+...+.. ...|..||++|.+.+.+...
T Consensus       154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~  211 (287)
T PRK13641        154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEY  211 (287)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            344555556778999999876  54443444433332 12477788888887765443

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=95.68  E-value=0.043  Score=47.38  Aligned_cols=47  Identities=17%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             CceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          291 NKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       291 ~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      +++-++++|+.-.  |+..-..+...+... ..++.+|+||.+.+.....
T Consensus        98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~  147 (162)
T cd03227          98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA  147 (162)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh
Confidence            3788999999877  444434443333221 1267899999999887654

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=95.67  E-value=0.012  Score=59.44  Aligned_cols=42  Identities=14%  Similarity=0.075  Sum_probs=36.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++||++.++.+...+..+.    -+.|.|++|+|||+||+.+..
T Consensus        20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~   61 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF   61 (498)
T ss_pred             hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence            458999999999998887643    467899999999999999987

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=95.67  E-value=0.072  Score=54.23  Aligned_cols=47  Identities=19%  Similarity=0.111  Sum_probs=36.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..++|....+.++.+.+..-......+.|.|.+|+|||++|+.+.+.
T Consensus       138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~  184 (469)
T PRK10923        138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH  184 (469)
T ss_pred             ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence            56889888888877777542233456789999999999999999873

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.67  E-value=0.2  Score=49.25  Aligned_cols=102  Identities=15%  Similarity=0.042  Sum_probs=51.2

Q ss_pred             ceEEEEEcCCCCchHH-HHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTA-FAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      -++|+++|+.|+|||| ||+..+.-.. ...=..+..|+... .....+-++...+-++.+-.    ...+..++...+.
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai~  277 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAIE  277 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHHH
Confidence            6899999999999996 6665544111 11123455555432 22334444455554544321    0114444444433


Q ss_pred             HHcCCceEEEEEeCCCC---CchhHHHHHhhCCC
Q 015752          287 DYLTNKKYFIVLDDVFD---DSEIWIDVEELLPD  317 (401)
Q Consensus       287 ~~L~~kr~LlVlDdv~~---~~~~~~~l~~~l~~  317 (401)
                      .+ +.+ =+|.+|-.-.   |.....++..++..
T Consensus       278 ~l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~  309 (407)
T COG1419         278 AL-RDC-DVILVDTAGRSQYDKEKIEELKELIDV  309 (407)
T ss_pred             Hh-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence            32 222 4555566544   34444555555443

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=95.67  E-value=0.1  Score=55.47  Aligned_cols=46  Identities=13%  Similarity=0.063  Sum_probs=36.7

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+.+
T Consensus       325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~  370 (638)
T PRK11388        325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN  370 (638)
T ss_pred             cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence            6789999888888887764222333477999999999999999987

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=95.64  E-value=0.012  Score=51.87  Aligned_cols=37  Identities=11%  Similarity=0.064  Sum_probs=30.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV  247 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v  247 (401)
                      .+++.|+|+.|+|||||++.+..  .....|...++.+-
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT   38 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT   38 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence            46888999999999999999998  66677766666553

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=95.64  E-value=0.076  Score=52.04  Aligned_cols=126  Identities=15%  Similarity=0.153  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---ccC------------------eEEEEEcCCC------CCHH--------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YFD------------------CHAWVRVSLD------YDFR--------  254 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~------------------~~~wv~vs~~------~~~~--------  254 (401)
                      .+++|+|+.|+|||||.+.++.-.....   .|+                  .+.++  .+.      .++.        
T Consensus        25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v--~q~~~l~~~~tv~enl~~~~~  102 (352)
T PRK11144         25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV--FQDARLFPHYKVRGNLRYGMA  102 (352)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEE--cCCcccCCCCcHHHHHHhhhh
Confidence            4899999999999999999975321100   011                  11111  111      1111        


Q ss_pred             ----HHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEE
Q 015752          255 ----RILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRV  324 (401)
Q Consensus       255 ----~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~i  324 (401)
                          .-..++++.++...........  .-+...-.|.+.|..++-+++||.--.  |...-..+...+..-  ..|..|
T Consensus       103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti  182 (352)
T PRK11144        103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI  182 (352)
T ss_pred             hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence                1233455555543211111222  222333345555566777999999866  554444444443321  225668


Q ss_pred             EEecCChhHHhhc
Q 015752          325 FITVTDPDLLASL  337 (401)
Q Consensus       325 ivTTR~~~v~~~~  337 (401)
                      |++|.+...+..+
T Consensus       183 i~vTHd~~~~~~~  195 (352)
T PRK11144        183 LYVSHSLDEILRL  195 (352)
T ss_pred             EEEecCHHHHHHh
Confidence            8888887655443

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=95.64  E-value=0.016  Score=56.41  Aligned_cols=56  Identities=14%  Similarity=0.255  Sum_probs=35.7

Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .-.|.+.|..++-++++|.--+  |+..-..+...+..-  ..|..||++|.+.++...+
T Consensus       148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~  207 (343)
T TIGR02314       148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI  207 (343)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3445555667788999999866  554444444444432  2366788888888776554

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=95.64  E-value=0.027  Score=56.74  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc-ccc-Cc------CHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS-VII-GE------DYQL  280 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-~~~-~~------~~~~  280 (401)
                      .-++|.|.+|+|||||+..+.+.... ++-+.++++-+++... +.+++.++...-....... ... +.      ....
T Consensus       144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~  222 (461)
T PRK12597        144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL  222 (461)
T ss_pred             CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence            45789999999999999888764322 2457788888877654 4556666654322111100 000 10      1122


Q ss_pred             HHHHHHHHc---CCceEEEEEeCC
Q 015752          281 KKSILRDYL---TNKKYFIVLDDV  301 (401)
Q Consensus       281 l~~~l~~~L---~~kr~LlVlDdv  301 (401)
                      ..-.+.+++   +|+++||++|++
T Consensus       223 ~a~tiAEyfrd~~G~~VLl~~Dsl  246 (461)
T PRK12597        223 TGLTIAEYLRDEEKEDVLLFIDNI  246 (461)
T ss_pred             HHHHHHHHHHHhcCCceEEEeccc
Confidence            334455565   389999999998

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.64  E-value=0.1  Score=55.71  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+++++|+.|+||||.+.++..
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHh
Confidence            36999999999999998888876

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.63  E-value=0.0091  Score=51.76  Aligned_cols=23  Identities=9%  Similarity=0.007  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...|.|+|++|+||||+|+.+..
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~   26 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAK   26 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHH
Confidence            45889999999999999999987

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=95.63  E-value=0.075  Score=51.55  Aligned_cols=20  Identities=10%  Similarity=0.039  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      +++.|++|+||||+++.+.+
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~   21 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSA   21 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999986

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=95.63  E-value=0.13  Score=53.20  Aligned_cols=46  Identities=11%  Similarity=-0.055  Sum_probs=35.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|....+.++++.+..-...-.-|.|+|..|+||+++|+.+.+
T Consensus       204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~  249 (520)
T PRK10820        204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL  249 (520)
T ss_pred             cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence            7899999888888877753112233477999999999999999865

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=95.63  E-value=0.13  Score=51.81  Aligned_cols=55  Identities=25%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      --|.+.|=|.++|+|||.-..  |.+-=..|..++.. ...|+-+|+.|..+++...+
T Consensus       481 IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~  538 (580)
T COG4618         481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV  538 (580)
T ss_pred             HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence            345666779999999998755  32211334443332 23456666666667776554

>PRK14526 adenylate kinase; Provisional

Probab=95.63  E-value=0.095  Score=47.42  Aligned_cols=20  Identities=25%  Similarity=0.205  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|+|++|+||||+++.+..
T Consensus         3 i~l~G~pGsGKsT~a~~La~   22 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSN   22 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999876

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=95.62  E-value=0.14  Score=54.97  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|+|..|+|||||++.+..
T Consensus       492 ~~iaIvG~sGsGKSTLlklL~g  513 (694)
T TIGR03375       492 EKVAIIGRIGSGKSTLLKLLLG  513 (694)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999998864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=95.62  E-value=0.14  Score=47.27  Aligned_cols=54  Identities=11%  Similarity=0.071  Sum_probs=32.4

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+..++-+++||+.-.  |...-+.+...+.. ...|..||++|.+......
T Consensus       154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~  210 (248)
T PRK09580        154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY  210 (248)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence            334455556678899999866  54433444333221 1235678889998776654

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=95.62  E-value=0.043  Score=55.00  Aligned_cols=89  Identities=15%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCC-------CCCCccccCc-CHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIP-------PSRVSVIIGE-DYQLK  281 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~-~~~~l  281 (401)
                      ..++|+|..|+|||||++.+....   .....+++..-...-++..+....+.....       ...+. .... -....
T Consensus       166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~-~~~r~~~~~~  241 (450)
T PRK06002        166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDES-PMMRRLAPLT  241 (450)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCC-HHHHHHHHHH
Confidence            478999999999999999887622   122344444332333444444444433211       00000 0000 11122


Q ss_pred             HHHHHHHc--CCceEEEEEeCCC
Q 015752          282 KSILRDYL--TNKKYFIVLDDVF  302 (401)
Q Consensus       282 ~~~l~~~L--~~kr~LlVlDdv~  302 (401)
                      .-.+.+++  +++.+|+++||+-
T Consensus       242 a~~iAEyfrd~G~~Vll~~DslT  264 (450)
T PRK06002        242 ATAIAEYFRDRGENVLLIVDSVT  264 (450)
T ss_pred             HHHHHHHHHHcCCCEEEeccchH
Confidence            22334444  5899999999984

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=95.62  E-value=0.027  Score=55.17  Aligned_cols=55  Identities=16%  Similarity=0.214  Sum_probs=34.9

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|.+.|..++=+++||.--.  |...-..+...+..-  ..|..+|++|.+...+..+
T Consensus       145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~  203 (353)
T PRK10851        145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV  203 (353)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            345555666778999999866  555545555444331  2366788888888766554

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=95.60  E-value=0.042  Score=46.68  Aligned_cols=18  Identities=28%  Similarity=0.185  Sum_probs=16.9

Q ss_pred             EEcCCCCchHHHHHHhhc
Q 015752          214 ILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       214 I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|+||+||||+|+.+..
T Consensus         1 i~G~PgsGK~t~~~~la~   18 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAK   18 (151)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHH
Confidence            689999999999999987

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=95.60  E-value=0.12  Score=53.09  Aligned_cols=56  Identities=9%  Similarity=0.115  Sum_probs=33.6

Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .-.+...|..++-+++||.--.  |...-..+...+.. ...|..||++|.+.+.....
T Consensus       149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~  207 (501)
T PRK10762        149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEI  207 (501)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            3444555667788999999866  54443444332222 12366788888887655443

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=95.60  E-value=0.19  Score=46.73  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...+..++-+++||+.-.  |...-..+...+..  ...|..||++|.+.+....
T Consensus       149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~  206 (254)
T PRK10418        149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVAR  206 (254)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence            344555666778999999866  54433333333322  1235678888887766544

>PRK05973 replicative DNA helicase; Provisional

Probab=95.59  E-value=0.091  Score=48.33  Aligned_cols=148  Identities=11%  Similarity=-0.002  Sum_probs=74.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------cccCc-CHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------VIIGE-DYQL  280 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------~~~~~-~~~~  280 (401)
                      .-.++.|.|.+|+|||+++.++..... ++ -..+++++...+  ..++...+. +++.+..+.      ...+. ....
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~-Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~  137 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAM-KS-GRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADY  137 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHH-hc-CCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHH
Confidence            346888999999999999998865322 22 245667766554  344444432 223221110      01111 2333


Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC-C----chhHHH----HHhhCCCCCCCcEEEEecCChhHHhhchhCCCcceeccccc
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD-D----SEIWID----VEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVL  351 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~-~----~~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~~~l~~~~  351 (401)
                      +...+.+  ..+.-++|+|.+-. +    ......    |.....  ..|..||+|+....-...-   ......+.+.+
T Consensus       138 ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak--~~gitvIl~sQl~r~~e~~---~~~~P~laDlR  210 (237)
T PRK05973        138 IIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFAR--ERGLIIVFISQIDRSFDPS---AKPLPDIRDVR  210 (237)
T ss_pred             HHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHH--hCCCeEEEEecCccccccC---CCCCCChhhcC
Confidence            3333333  12345899999753 1    112222    222222  3577788887654433221   11111333333


Q ss_pred             CCCCCCCChHHHHHHHHHhhCC
Q 015752          352 FGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       352 ~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      +++|+      =..||.+..+-
T Consensus       211 ~~~~~------d~~~f~~~~~~  226 (237)
T PRK05973        211 LPNPL------DLSLFDKACFL  226 (237)
T ss_pred             CCChh------hHHHhhhhhee
Confidence            33344      47888888763

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=95.59  E-value=0.019  Score=56.19  Aligned_cols=55  Identities=13%  Similarity=0.145  Sum_probs=34.6

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|.+.|..++=+++||.--.  |......+...+..-  ..|..+|++|.+..-+..+
T Consensus       145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l  203 (351)
T PRK11432        145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV  203 (351)
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence            345556666788899999866  555545555444321  2366788888888765443

>PRK05439 pantothenate kinase; Provisional

Probab=95.58  E-value=0.076  Score=50.85  Aligned_cols=26  Identities=15%  Similarity=-0.014  Sum_probs=23.0

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          206 SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .....+|+|.|.+|+||||+|+.+..
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999998876

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=95.56  E-value=0.029  Score=52.79  Aligned_cols=22  Identities=14%  Similarity=0.043  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|+|.||+||||+|+.+..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~   23 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKK   23 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Confidence            4788999999999999999876

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.1  Score=51.22  Aligned_cols=101  Identities=19%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccc
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI  273 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~  273 (401)
                      ...++-..|-.+--.-.+|.|-|-+|||||||..++..  ++...- .+.+|+-.+..  ..+ +--++.++.......-
T Consensus        78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l  151 (456)
T COG1066          78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESL--QQI-KLRADRLGLPTNNLYL  151 (456)
T ss_pred             ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCH--HHH-HHHHHHhCCCccceEE
Confidence            34556555544322346889999999999999999988  443333 66776654443  222 2334555543321111


Q ss_pred             cCc-CHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752          274 IGE-DYQLKKSILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       274 ~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~  303 (401)
                      ... +.+++...+.+   .++-|+|+|.+..
T Consensus       152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT  179 (456)
T COG1066         152 LAETNLEDIIAELEQ---EKPDLVVIDSIQT  179 (456)
T ss_pred             ehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence            222 44544444444   6889999999843

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=95.55  E-value=0.13  Score=52.73  Aligned_cols=53  Identities=6%  Similarity=0.117  Sum_probs=32.5

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~  336 (401)
                      .+...|..++-+++||.-..  |...-..+...+.. ...|..||++|.+.+....
T Consensus       144 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~  199 (491)
T PRK10982        144 EIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ  199 (491)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence            34445556777999999876  55544555443332 1235668888888765544

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=95.55  E-value=0.017  Score=56.40  Aligned_cols=156  Identities=15%  Similarity=0.191  Sum_probs=82.8

Q ss_pred             ccccccccHHHHHHHHhcC---------------CCCceEEEEEcCCCCchHHHHHHhhcccCcc--ccc---CeEEEE-
Q 015752          187 DISHFERGREELFDLLIEG---------------SSGLSVVAILDSGGFDKTAFAADTYNNNHVK--FYF---DCHAWV-  245 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv-  245 (401)
                      +..|-..+...|.+..-..               -..-.+++|+|.+|.||||+.+.+..-....  ..|   .+.+-+ 
T Consensus       372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp  451 (593)
T COG2401         372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP  451 (593)
T ss_pred             ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence            3455566666666655321               1223478999999999999998886522111  111   011111 


Q ss_pred             ------Ec----CCCCCHHHHHHHHHHHcCC-------------CCCCc--cccCc--CHHHHHHHHHHHcCCceEEEEE
Q 015752          246 ------RV----SLDYDFRRILDDIIKSVIP-------------PSRVS--VIIGE--DYQLKKSILRDYLTNKKYFIVL  298 (401)
Q Consensus       246 ------~v----s~~~~~~~~~~~i~~~l~~-------------~~~~~--~~~~~--~~~~l~~~l~~~L~~kr~LlVl  298 (401)
                            .+    ...++-..++.++.+..+.             .+---  ..+..  +.+.-...|.+.+..+.-+++.
T Consensus       452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i  531 (593)
T COG2401         452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI  531 (593)
T ss_pred             ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence                  01    1122323344444333322             10000  11222  3444556777888888889999


Q ss_pred             eCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhchhCCCcce
Q 015752          299 DDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASLEMENGEKI  345 (401)
Q Consensus       299 Ddv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~~~~~~~~~  345 (401)
                      |....  |+-.--.+...+.+.  ..|+.+++.|+.+++....   .++.+
T Consensus       532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL---~PD~l  579 (593)
T COG2401         532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNAL---RPDTL  579 (593)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhcc---CCcee
Confidence            98865  443333333333332  2577788888888888777   45544

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.54  E-value=0.13  Score=47.15  Aligned_cols=55  Identities=15%  Similarity=0.134  Sum_probs=33.8

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+...|..++-+++||+.-.  |....+.+...+..-..+..||++|.+......+
T Consensus       147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~  203 (234)
T cd03251         147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENA  203 (234)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence            344445555667899999866  5555555554443322356788888887665433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04328 hypothetical protein; Provisional

Probab=95.54  E-value=0.046  Score=50.83  Aligned_cols=126  Identities=15%  Similarity=0.168  Sum_probs=67.5

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC-------
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV-------  270 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------  270 (401)
                      |-+.|..+=..-.++.|.|.+|+|||+|+.++.... . ..-..++|++...++  ..+. ..++.++.+...       
T Consensus        12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~~--~~i~-~~~~~~g~d~~~~~~~~~l   86 (249)
T PRK04328         12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEHP--VQVR-RNMRQFGWDVRKYEEEGKF   86 (249)
T ss_pred             HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCCH--HHHH-HHHHHcCCCHHHHhhcCCE
Confidence            333343333345788999999999999998876521 2 224567888876643  2332 233333321000       


Q ss_pred             ---------------cc--cc-Cc-CHHHHHHHHHHHcCC-ceEEEEEeCCCC----Cch----hHHHHHhhCCCCCCCc
Q 015752          271 ---------------SV--II-GE-DYQLKKSILRDYLTN-KKYFIVLDDVFD----DSE----IWIDVEELLPDDENGS  322 (401)
Q Consensus       271 ---------------~~--~~-~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~~----~~~----~~~~l~~~l~~~~~gs  322 (401)
                                     ..  .. .. +...+...+.+.++. +.-++|+|.+-.    ++.    ....+...+.  ..|+
T Consensus        87 ~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk--~~g~  164 (249)
T PRK04328         87 AIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLS--GLGC  164 (249)
T ss_pred             EEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHH--hCCC
Confidence                           00  00 11 455566666666543 445799999843    111    1122333332  4577


Q ss_pred             EEEEecCC
Q 015752          323 RVFITVTD  330 (401)
Q Consensus       323 ~iivTTR~  330 (401)
                      .+|+|+..
T Consensus       165 t~llt~e~  172 (249)
T PRK04328        165 TAIFVSQV  172 (249)
T ss_pred             EEEEEECc
Confidence            78888643

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.54  E-value=0.01  Score=52.05  Aligned_cols=23  Identities=9%  Similarity=0.190  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|.|++|+|||||++.+...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998763

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.53  E-value=0.022  Score=51.64  Aligned_cols=86  Identities=15%  Similarity=0.242  Sum_probs=50.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCC-CHHHHHHHHHHHcCCCCCCc--cccCc----------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDY-DFRRILDDIIKSVIPPSRVS--VIIGE----------  276 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~----------  276 (401)
                      .-++|.|.+|+|||+|+..+.++..    -+..+++.+++.. .+.++.+++...-.......  ...++          
T Consensus        16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~   91 (215)
T PF00006_consen   16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY   91 (215)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred             CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence            3577999999999999999987432    2344777787764 44555555533211110000  00010          


Q ss_pred             CHHHHHHHHHHHcCCceEEEEEeCC
Q 015752          277 DYQLKKSILRDYLTNKKYFIVLDDV  301 (401)
Q Consensus       277 ~~~~l~~~l~~~L~~kr~LlVlDdv  301 (401)
                      ..-..++.++.  +|+++|+++||+
T Consensus        92 ~a~t~AEyfrd--~G~dVlli~Dsl  114 (215)
T PF00006_consen   92 TALTIAEYFRD--QGKDVLLIIDSL  114 (215)
T ss_dssp             HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred             cchhhhHHHhh--cCCceeehhhhh
Confidence            01122333333  699999999997

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.53  E-value=0.14  Score=48.56  Aligned_cols=56  Identities=21%  Similarity=0.240  Sum_probs=35.3

Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      ..-.+...|..++-+++||....  |...-..+...+..-  ..|..||++|.+.+....
T Consensus       152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~  211 (286)
T PRK13646        152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR  211 (286)
T ss_pred             HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence            33445555667778999999876  554444454444321  246788888888765443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.53  E-value=0.0082  Score=53.60  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|+|.|.+|+|||||++.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK08149 ATP synthase SpaL; Validated

Probab=95.51  E-value=0.05  Score=54.31  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=50.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCC-CHHHHHHHHHHHcCCCCCCc--cccCc------CHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDY-DFRRILDDIIKSVIPPSRVS--VIIGE------DYQL  280 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~------~~~~  280 (401)
                      ..++|+|..|+|||||+..+++...    -+.++...+.... ++..+..+............  ...+.      ....
T Consensus       152 q~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~  227 (428)
T PRK08149        152 QRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL  227 (428)
T ss_pred             CEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence            4689999999999999999987322    2333334444433 45555555555332211000  00010      1112


Q ss_pred             HHHHHHHHc--CCceEEEEEeCCCC
Q 015752          281 KKSILRDYL--TNKKYFIVLDDVFD  303 (401)
Q Consensus       281 l~~~l~~~L--~~kr~LlVlDdv~~  303 (401)
                      ..-.+.+++  +||++||++||+-.
T Consensus       228 ~a~tiAE~fr~~G~~Vll~~DslTr  252 (428)
T PRK08149        228 VATTVAEYFRDQGKRVVLFIDSMTR  252 (428)
T ss_pred             HHHHHHHHHHHcCCCEEEEccchHH
Confidence            233344444  58999999999843

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.51  E-value=0.046  Score=55.76  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+|+|+|.+|+||||++.++..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988875

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.51  E-value=0.055  Score=50.75  Aligned_cols=129  Identities=16%  Similarity=0.128  Sum_probs=67.3

Q ss_pred             ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCC
Q 015752          189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPS  268 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~  268 (401)
                      .|...+..+.+..+...  .-.++.|.|..|+||||++..+.+  .+...-..+  +++..+....  +.. ..++....
T Consensus        62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~--~i~~~~~~i--itiEdp~E~~--~~~-~~q~~v~~  132 (264)
T cd01129          62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALS--ELNTPEKNI--ITVEDPVEYQ--IPG-INQVQVNE  132 (264)
T ss_pred             cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeE--EEECCCceec--CCC-ceEEEeCC
Confidence            34444444444444432  235789999999999999998865  222211122  2333322110  000 01111110


Q ss_pred             CCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                             .........++..|+..+=.|+++++.+ .+....+..+..   .|..++-|....++...+
T Consensus       133 -------~~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~aa~---tGh~v~tTlHa~~~~~ai  190 (264)
T cd01129         133 -------KAGLTFARGLRAILRQDPDIIMVGEIRD-AETAEIAVQAAL---TGHLVLSTLHTNDAPGAI  190 (264)
T ss_pred             -------cCCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHHHHHHHH---cCCcEEEEeccCCHHHHH
Confidence                   0112345566777777888999999988 655444333322   244466666666555443

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.51  E-value=0.14  Score=47.61  Aligned_cols=56  Identities=18%  Similarity=0.238  Sum_probs=34.0

Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      .-.+...+..++-++++|+.-.  |...-..+...+...  ..|..||++|.+.......
T Consensus       156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~  215 (253)
T TIGR02323       156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLL  215 (253)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3344455566778889999866  544444444433321  2366788888887766543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR01069 mutS2 MutS2 family protein

Probab=95.50  E-value=0.011  Score=63.81  Aligned_cols=122  Identities=15%  Similarity=0.124  Sum_probs=60.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc---CHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE---DYQLKKSI  284 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~l~~~  284 (401)
                      +..+++|+|+.|.|||||.+.+....-.   .....+|....... ...+.++...++....-.+....   ....+...
T Consensus       321 ~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i  396 (771)
T TIGR01069       321 EKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI  396 (771)
T ss_pred             CceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence            3468999999999999999988642000   00111111111000 00111111111111000001111   22233322


Q ss_pred             HHHHcCCceEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          285 LRDYLTNKKYFIVLDDVFD--DSEIWIDV----EELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      +.. + +.+-|++||..-.  |+.+-..+    ...+.  ..|+.+|+||....+....
T Consensus       397 l~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~  451 (771)
T TIGR01069       397 LSK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALM  451 (771)
T ss_pred             HHh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence            222 2 5789999999977  54444433    22332  2478899999998876544

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=95.49  E-value=0.11  Score=53.68  Aligned_cols=46  Identities=20%  Similarity=0.073  Sum_probs=37.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|....+.++.+.+..-.....-|.|.|..|.||+.+|+.+++
T Consensus       212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~  257 (526)
T TIGR02329       212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQ  257 (526)
T ss_pred             hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHH
Confidence            6799999999888888754223345678999999999999999986

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=95.48  E-value=0.037  Score=54.84  Aligned_cols=46  Identities=13%  Similarity=0.071  Sum_probs=35.1

Q ss_pred             CccccccccHHHHHHHHhcC------------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEG------------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.++.+..+...+...            ....+-|.++|++|+|||+||+.+..
T Consensus        12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~   69 (441)
T TIGR00390        12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK   69 (441)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence            45788888888776666531            11236788999999999999999987

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=95.48  E-value=0.19  Score=52.38  Aligned_cols=53  Identities=26%  Similarity=0.313  Sum_probs=33.8

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|...+-.++-+++||.-.+  |...-..+...+..-. + .||++|.+.+....+
T Consensus       172 v~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~~~  226 (556)
T PRK11819        172 VALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLDNV  226 (556)
T ss_pred             HHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhh
Confidence            334444556677999999876  6555555555544332 4 588888888766554

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=95.47  E-value=0.014  Score=53.24  Aligned_cols=122  Identities=12%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      ...++.|.|+.|.||||+.+.+..-.-.   +....+|....  ........++..++.........+ ....-...+..
T Consensus        29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS-~~~~e~~~~a~  102 (222)
T cd03285          29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDS--ADIPIVDCILARVGASDSQLKGVS-TFMAEMLETAA  102 (222)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCccc--EEEeccceeEeeeccccchhcCcC-hHHHHHHHHHH
Confidence            4578999999999999998887531000   00001111111  000112223333332211100111 22222222333


Q ss_pred             Hc--CCceEEEEEeCCC---C--Cch--hHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          288 YL--TNKKYFIVLDDVF---D--DSE--IWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       288 ~L--~~kr~LlVlDdv~---~--~~~--~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+  ..++-|++||...   +  |..  .|.-+ ..+.. ..|+.+|+||...++...+
T Consensus       103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~  159 (222)
T cd03285         103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALA  159 (222)
T ss_pred             HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHh
Confidence            33  3578899999993   3  221  22222 23322 2467899999987776654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.47  E-value=0.091  Score=49.43  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|+|..|+|||||.+.++.-
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl   58 (271)
T PRK13632         36 EYVAILGHNGSGKSTISKILTGL   58 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999998753

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=95.47  E-value=0.14  Score=47.64  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      .+...+..++-+++||+--.  |....+.+...+..- ..|..||++|.+......
T Consensus       148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~  203 (255)
T PRK11231        148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASR  203 (255)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            34445556778999999866  555555555544321 235678888888775443

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.47  E-value=0.18  Score=48.28  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=33.7

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|...|..++-+|+||+.-.  |......+...+..-..+..||++|.+......+
T Consensus       209 v~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~  265 (305)
T PRK14264        209 LCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARI  265 (305)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence            344445556778999999866  5555555544443322234588888888775543

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=95.46  E-value=0.025  Score=55.83  Aligned_cols=55  Identities=15%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|.+.|..++=+++||+--.  |......+...+..-  ..|..||++|.+...+..+
T Consensus       153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~l  211 (375)
T PRK09452        153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTM  211 (375)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            344555556677999999866  555455555544431  2366788888887765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	6e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	6e-18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-08

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  102 bits (257), Expect = 6e-24
 Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 25/263 (9%)

Query: 82  LLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMA- 140
           LL   E+ E+D++T+ I++ +          EE +    T   +            N + 
Sbjct: 9   LLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSY 68

Query: 141 ---LLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQ-----PRLDISHFE 192
                  LH    D+ + +    P  +     +  + I   +         P+  +    
Sbjct: 69  VSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVT 128

Query: 193 RG--REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK--FYFDCHAWVRVS 248
           R      +   L +       V I    G  K+  AA+   ++ +    +     WV V 
Sbjct: 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188

Query: 249 LDYDFRRI--LDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNK--KYFIVLDDVFDD 304
                  +  L ++   +      S  +  + +  K  LR  +  K  +  ++LDDV+D 
Sbjct: 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD- 247

Query: 305 SEIWIDVEELLPDDENGSRVFIT 327
                    +L   ++  ++ +T
Sbjct: 248 -------SWVLKAFDSQCQILLT 263

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 95.7 bits (237), Expect = 3e-21
 Identities = 62/417 (14%), Positives = 124/417 (29%), Gaps = 111/417 (26%)

Query: 69  DFDDSNISLPFLQLL-DLEESDEEDVETADILEIL------EDINDFVHESEEAIDTY-- 119
           DF+       +  +L   E++  ++ +  D+ ++       E+I+  +   +    T   
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 120 FTNIMQQQNSEA----ESESSTNMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEI 175
           F  ++ +Q        E     N   L+        I++  +Q P       I ++    
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMS------PIKTEQRQ-PSMMTRMYIEQRDR-- 118

Query: 176 IHLLSEGQPRLDISHFERGREELFDLLIEGSSGLSV---VAILDSGGFDKTAFAADTYNN 232
             L ++ Q     + +   R + +  L +    L     V I    G  KT  A D   +
Sbjct: 119 --LYNDNQV---FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 233 NHVKFYFDCHA-WVRVSLDYDFRRILD-------DIIKSVIPPSRVSVIIGEDYQLKKSI 284
             V+   D    W+ +        +L+        I  +    S  S  I       ++ 
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 285 LRDYLTNKKY---FIVLDDVFDDSEIW--IDVEELLPDDENGSRVFITVTDPDLLASLEM 339
           LR  L +K Y    +VL +V  +++ W   ++           ++ +T     +   L  
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNL---------SCKILLTTRFKQVTDFLSA 283

Query: 340 ENGEKIRLDSV-----------LF-----------------GGPLI------RLKHEA-- 363
                I LD             L                    P         ++     
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 364 WQFFILHYGSMPLE-------NYLQGEAFRQLGDKF------------VLC--WSYL 399
           W  +  H     L        N L+   +R++ D+             +L   W  +
Sbjct: 344 WDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 69/432 (15%), Positives = 110/432 (25%), Gaps = 180/432 (41%)

Query: 2   LDVHLRLFRER-----LKRVLAGEEGTLPLPDSTNLTPLFQNLLTES------------- 43
           LD H            L + L      LP  +     P   +++ ES             
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 44  -------EIIVTTL--LGKYEVDMARHLFQLLREDF-DDSNISLPFLQLL--DLEESDEE 91
                   II ++L  L   E    R +F  L   F   ++I    L L+  D+ +SD  
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEY---RKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 92  DV--ETADILEILEDINDF---VHESEEAIDTYFTNIMQQQNSEAESESSTNMALLVGLH 146
            V  +      + +   +    +         Y    ++ +N  A             LH
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIP------SIYLELKVKLENEYA-------------LH 446

Query: 147 TKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPRLD------ISH--FERGREEL 198
             I+D  +  +     D                    P LD      I H        E 
Sbjct: 447 RSIVDHYNIPKTFDSDD-----------------LIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 199 FDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDF--RRI 256
             L                  F                          V LD+ F  ++I
Sbjct: 490 MTL------------------FRM------------------------VFLDFRFLEQKI 507

Query: 257 LDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLP 316
             D        S ++ +     QLK      Y   K Y    D  ++   +   + + LP
Sbjct: 508 RHDSTAWNASGSILNTLQ----QLKF-----Y---KPYICDNDPKYE--RLVNAILDFLP 553

Query: 317 DDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPL 376
             E                    EN              LI  K+      +L    M  
Sbjct: 554 KIE--------------------EN--------------LICSKYTD----LLRIALMAE 575

Query: 377 ENYLQGEAFRQL 388
           +  +  EA +Q+
Sbjct: 576 DEAIFEEAHKQV 587

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 84.7 bits (209), Expect = 6e-18
 Identities = 60/338 (17%), Positives = 98/338 (28%), Gaps = 50/338 (14%)

Query: 82  LLDLEESDEEDVETADILEILEDINDFVHESEEAIDT---------YFTNIMQQQNSEAE 132
           L         D E  D L  LE  N F  +  E I            F  I ++Q SE  
Sbjct: 10  LSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASELG 69

Query: 133 SESST----NMALLVGLHTKIIDIRSRMQQLPPGDNGFDISEKSNEIIHLLSEGQPRLDI 188
                    N + L       ID       L           +      LL    P+   
Sbjct: 70  PLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMT 129

Query: 189 SHFERGREELFDLLIE-----GSSGLSVVAILDSGGFDKTAFAADTYNNN--HVKFYFDC 241
            +    RE   D +I+            + +    G  K+  A+   + +   +   +D 
Sbjct: 130 CY---IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS 186

Query: 242 HAWVRVSLDYD------FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYF 295
             W++ S          F  IL  +       +  SV       LK+ I    +      
Sbjct: 187 IVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTL 246

Query: 296 IVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEKIRLDSVLFGGP 355
            V DDV          E +    E   R  +T  D + +++   +  E I + S+     
Sbjct: 247 FVFDDV------V-QEETIRWAQELRLRCLVTTRDVE-ISNAASQTCEFIEVTSL----- 293

Query: 356 LIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV 393
                 E + F   +   MP+      E    + +K +
Sbjct: 294 ---EIDECYDFLEAYGMPMPVG-----EKEEDVLNKTI 323

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 53/332 (15%), Positives = 107/332 (32%), Gaps = 53/332 (15%)

Query: 82  LLDLEESDEEDVETADILEILEDINDFVHESEEAIDTYFTNIMQQQNSEAESESSTNMAL 141
           LL   E+ E+D++T+ I++ +  I++ V    E        +  Q      + +   M L
Sbjct: 9   LLQHREALEKDIKTSYIMDHM--ISNGVLSVIEEE-----KVKSQATQYQRAAALIKMIL 61

Query: 142 LVGLHTKIIDIRSRMQQ--------LPPGDNGFDISEKSNEIIHLLSEGQPRLDI----- 188
                  I    + + +        L  G      S   +    + S  +  L       
Sbjct: 62  NKDNCAYISFYNALLHEGYKDLAALLQSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQ 121

Query: 189 --SHFERGREELFDLLIEGSSGLS----VVAILDSGGFDKTAFAADT-YNNNHVKFYF-D 240
               F   R++L   + +    L+     V I    G  K+  AA+   +++ ++  F  
Sbjct: 122 RPVIF-VTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSG 180

Query: 241 CHAW--VRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKY--FI 296
              W  +           L ++   +      S  +  + +  K  LR  +  K     +
Sbjct: 181 GVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLL 240

Query: 297 VLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLE-----------MENGEKI 345
           +LDDV+D          +L   +N  ++ +T  D  +  S+            +   + +
Sbjct: 241 ILDDVWD--------PWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGL 292

Query: 346 RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLE 377
            + S+        L  E     I      PL 
Sbjct: 293 EILSLFVNMKKEDLPAE-AHSIIKECKGSPLV 323

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.92
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.89
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.88
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.52
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.43
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.39
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.31
2fna_A	357	Conserved hypothetical protein; structural genomic	99.29
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.28
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.27
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.25
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.22
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.19
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.99
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.8
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.76
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.67
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.64
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.52
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.49
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.45
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.42
3bos_A	242	Putative DNA replication factor; P-loop containing	98.4
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.38
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.38
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.36
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.35
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.35
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.27
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.27
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.26
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.26
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.25
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.24
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.24
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.23
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.21
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.2
3pvs_A	447	Replication-associated recombination protein A; ma	98.17
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.13
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.11
3co5_A	143	Putative two-component system transcriptional RES	98.09
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.07
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.07
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.05
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.04
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.03
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.0
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.99
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.96
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.93
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.88
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.88
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.81
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.8
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.8
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.78
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.74
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.71
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.71
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.62
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.6
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.57
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.56
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.56
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.52
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.51
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.46
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.39
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.35
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.34
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.32
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.31
2qgz_A	308	Helicase loader, putative primosome component; str	97.29
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.25
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.18
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.13
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.12
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.09
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.04
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.03
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.02
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.97
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.93
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.91
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.84
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.82
3io5_A	333	Recombination and repair protein; storage dimer, i	96.82
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.79
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.76
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.74
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.73
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.71
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.68
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.67
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.66
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.65
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.65
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.63
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.61
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.61
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.59
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.56
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.54
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.51
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.5
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.5
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.5
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.48
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.46
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.42
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.4
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.39
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.3
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.26
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.26
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.25
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.19
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.19
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.19
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.18
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.18
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.16
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.16
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.16
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.13
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.1
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.08
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.05
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	96.04
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.98
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.97
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.95
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.93
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.92
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.91
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.85
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.82
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.77
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.75
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.74
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.73
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.72
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.7
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.69
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.69
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.66
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.66
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.65
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.65
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.63
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.58
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.58
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.55
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.54
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.54
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.54
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.52
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.5
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.5
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.49
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.48
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.47
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.46
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.45
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.43
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.43
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.43
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.39
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.39
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.36
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.36
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.35
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.35
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.32
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.32
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.31
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.29
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.28
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.28
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.28
1via_A	175	Shikimate kinase; structural genomics, transferase	95.27
3ice_A	422	Transcription termination factor RHO; transcriptio	95.27
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.27
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.25
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.23
2xxa_A	433	Signal recognition particle protein; protein trans	95.22
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.22
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.22
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.2
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.19
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.19
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.19
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.18
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.17
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.16
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.14
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.14
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.13
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.13
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.13
3fwy_A	314	Light-independent protochlorophyllide reductase I	95.12
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.11
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.1
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.1
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.09
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.08
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.06
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.98
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.98
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.96
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.94
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.93
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.92
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.89
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.89
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.87
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.86
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.83
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.82
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.81
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.75
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.75
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.74
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.72
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.71
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.69
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.69
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.69
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.68
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.67
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.66
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.65
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.63
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.61
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.59
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.58
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.58
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.56
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.55
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.52
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.51
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.49
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.49
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.43
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.38
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.36
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	94.34
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	94.33
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.3
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.29
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.24
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.23
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.17
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.16
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.15
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.12
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.1
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.09
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.08
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.08
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.03
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.0
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.98
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.98
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.96
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.95
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.95
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.93
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.91
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.89
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.89
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.83
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	93.83
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	93.82
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.78
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	93.76
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.74
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.74
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.72
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.72
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.71
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.7
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	93.7
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.69
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.66
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	93.64
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.58
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.5
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	93.46
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	93.46
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.45
1g6h_A	257	High-affinity branched-chain amino acid transport	93.4
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.38
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.37
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.36
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.35
2og2_A	359	Putative signal recognition particle receptor; nuc	93.34
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.33
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.3
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	93.29
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.28
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	93.21
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	93.2
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.2
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	93.19
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.17
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	93.15
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	93.09
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	93.09
3end_A	307	Light-independent protochlorophyllide reductase ir	93.08
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.05
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.03
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.02
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	93.01
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.99
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	92.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.95
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	92.93
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.93
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	92.89
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.88
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.88
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.87
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	92.86
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	92.83
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.82
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.79
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.76
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	92.74
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	92.73
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.72
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	92.71
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.7
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	92.68
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	92.67
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.63
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	92.61
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.56
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	92.56
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.55
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.54
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	92.5
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.48
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.46
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	92.43
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.42
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.38
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	92.38
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.37
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.35
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.34
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.33
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.26
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	92.25
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.23
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.23
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.21
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	92.16
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	92.15
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.13
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.13
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.12
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.1
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.08
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.04
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.04
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.03
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	92.03
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.02
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.01
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.99
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	91.99
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.99
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	91.98
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.97
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	91.96
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.94
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	91.94
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	91.94
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.92
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	91.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.91
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	91.9
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.9
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.9
3kta_A	182	Chromosome segregation protein SMC; structural mai	91.86
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.85
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	91.83
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	91.8
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.79
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	91.77
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.76
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	91.73
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.73
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.7
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	91.68
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	91.67
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	91.65
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	91.65
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.64
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.61
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	91.61
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	91.55
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.55
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	91.54
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.54
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.53
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	91.52
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.49
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.48
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.45
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.45
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.41
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	91.4
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.39
3llu_A	196	RAS-related GTP-binding protein C; structural geno	91.34
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	91.34
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.31
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	91.3
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.28
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.26
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.25
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.23
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.22
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.21
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	91.2
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	91.19
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.18
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.17
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	91.16
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	91.16
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.14
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.12
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	91.11
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	91.1
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.08
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	91.08
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.05
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.04
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.01
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.99
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.88
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	90.87
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	90.84
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	90.83
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.82
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	90.81
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.79
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	90.79
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.78
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.77
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	90.74
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	90.71
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	90.68
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.67
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	90.65
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	90.59
1p9r_A	418	General secretion pathway protein E; bacterial typ	90.56
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	90.55
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	90.52
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.49
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	90.48
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	90.47
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	90.45
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	90.42
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.39
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.38
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	90.37
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	90.34
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	90.3
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	90.27
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	90.26
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.24
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	90.24
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.21
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.2
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	90.18
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	90.17
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.17
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	90.16
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.14
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	90.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	89.99

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.97  E-value=7e-30  Score=262.65  Aligned_cols=190  Identities=16%  Similarity=0.176  Sum_probs=156.8

Q ss_pred             ccccccHHHHHHHHhcC-CCCceEEEEEcCCCCchHHHHHHhhc--ccCcccccCeEEEEEcCCCC--CHHHHHHHHHHH
Q 015752          189 SHFERGREELFDLLIEG-SSGLSVVAILDSGGFDKTAFAADTYN--NNHVKFYFDCHAWVRVSLDY--DFRRILDDIIKS  263 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~  263 (401)
                      |||+.++++|.++|..+ +...++|+|+||||+||||||+++|+  +.+++.+|++++|+++++.+  ++..++..|+.+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            59999999999999764 44689999999999999999999998  68899999999999999985  889999999999


Q ss_pred             cCCCCC--CccccCc-CHHHHHHHHHHHcCCc-eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchh
Q 015752          264 VIPPSR--VSVIIGE-DYQLKKSILRDYLTNK-KYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEM  339 (401)
Q Consensus       264 l~~~~~--~~~~~~~-~~~~l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~  339 (401)
                      ++....  ....... +...+...+++.|+++ ||||||||||+ .+.+ .+..     .+||+||||||++.++..+  
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~--  281 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----ELRLRCLVTTRDVEISNAA--  281 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----HTTCEEEEEESBGGGGGGC--
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----cCCCEEEEEcCCHHHHHHc--
Confidence            987532  1112333 6778899999999996 99999999999 6644 1211     1699999999999999877  


Q ss_pred             CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          340 ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       340 ~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      +....+ +|+      +|  +++|||+||.+.++..+     .++.+++++++|+ +|+|.++
T Consensus       282 ~~~~~~~~l~------~L--~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~I~~~c~GlPL  331 (549)
T 2a5y_B          282 SQTCEFIEVT------SL--EIDECYDFLEAYGMPMP-----VGEKEEDVLNKTIELSSGNPA  331 (549)
T ss_dssp             CSCEEEEECC------CC--CHHHHHHHHHHTSCCCC-------CHHHHHHHHHHHHHTTCHH
T ss_pred             CCCCeEEECC------CC--CHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHHHhCCChH
Confidence            224455 999      99  99999999999987532     1467899999999 9999764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.92  E-value=4.9e-25  Score=245.76  Aligned_cols=190  Identities=15%  Similarity=0.215  Sum_probs=148.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc-cccc-CeEEEEEcCCCCC--HHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV-KFYF-DCHAWVRVSLDYD--FRRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~i~  261 (401)
                      ..||||++++++|.++|...+.+.++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+  ....+..++
T Consensus       124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  203 (1249)
T 3sfz_A          124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC  203 (1249)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred             ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence            77999999999999999876677899999999999999999999996433 4445 5788999998644  444577788


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHHHcCCc--eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhchh
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRDYLTNK--KYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEM  339 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~  339 (401)
                      ..+............+.+.+...++..+.++  ||||||||||+ ...|..+       .+||+||||||++.++..+  
T Consensus       204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~~~~~~--  273 (1249)
T 3sfz_A          204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKSVTDSV--  273 (1249)
T ss_dssp             HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTTTTTTC--
T ss_pred             HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHHHHHhh--
Confidence            8877653322122227888999999999877  99999999999 6554432       4689999999999998554  


Q ss_pred             CCCcce-ecccccCCCC-CCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          340 ENGEKI-RLDSVLFGGP-LIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       340 ~~~~~~-~l~~~~~~~~-L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      .....+ .++      + |  +++|||+||...++...       +.+.+++++|+ +|+|.++
T Consensus       274 ~~~~~~~~~~------~~l--~~~~a~~l~~~~~~~~~-------~~~~~~~~~i~~~~~glPL  322 (1249)
T 3sfz_A          274 MGPKHVVPVE------SGL--GREKGLEILSLFVNMKK-------EDLPAEAHSIIKECKGSPL  322 (1249)
T ss_dssp             CSCBCCEECC------SSC--CHHHHHHHHHHHHTSCS-------TTCCTHHHHHHHHTTTCHH
T ss_pred             cCCceEEEec------CCC--CHHHHHHHHHHhhCCCh-------hhCcHHHHHHHHHhCCCHH
Confidence            134445 888      7 9  99999999999986422       22356789999 9999764

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.89  E-value=5.8e-23  Score=217.98  Aligned_cols=175  Identities=17%  Similarity=0.114  Sum_probs=131.4

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCe-EEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDC-HAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      ...|||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+..+
T Consensus       128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL  206 (1221)
T 1vt4_I          128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL  206 (1221)
T ss_dssp             CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            445999999999999998633 4789999999999999999999998888999996 99999999999888888877753


Q ss_pred             CCCC---CCccc----cCcCHHHHHHHHHHHc---CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 015752          265 IPPS---RVSVI----IGEDYQLKKSILRDYL---TNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLL  334 (401)
Q Consensus       265 ~~~~---~~~~~----~~~~~~~l~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~  334 (401)
                      +...   .....    ...+.+.+...+++.|   .++|+||||||||+ .+.|+.+.       +||+||||||++.++
T Consensus       207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~~Va  278 (1221)
T 1vt4_I          207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFKQVT  278 (1221)
T ss_dssp             HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred             hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccChHHH
Confidence            2210   00000    1114456677777766   78999999999999 88887652       589999999999998


Q ss_pred             hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          335 ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       335 ~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      ..+.......+.++...+  +|  +++|||+||.+..+.
T Consensus       279 ~~l~g~~vy~LeL~d~dL--~L--S~eEA~eLF~~~~g~  313 (1221)
T 1vt4_I          279 DFLSAATTTHISLDHHSM--TL--TPDEVKSLLLKYLDC  313 (1221)
T ss_dssp             HHHHHHSSCEEEECSSSS--CC--CHHHHHHHHHHHHCC
T ss_pred             HhcCCCeEEEecCccccC--Cc--CHHHHHHHHHHHcCC
Confidence            654111122234441112  58  999999999999653

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.88  E-value=1.7e-22  Score=209.28  Aligned_cols=189  Identities=16%  Similarity=0.182  Sum_probs=138.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCc-ccccC-eEEEEEcCCCCCHHHHHH---HH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHV-KFYFD-CHAWVRVSLDYDFRRILD---DI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~~~~---~i  260 (401)
                      ..||||+.++++|.++|.....+.++|+|+||||+||||||+.++++..+ ..+|+ .++|++++.. +...++.   .+
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l  202 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL  202 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred             CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence            78999999999999999865556899999999999999999999996555 78895 8999999876 3333333   34


Q ss_pred             HHHcCCCCCCccccCc-CHHHHHHHHHHHcCC--ceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          261 IKSVIPPSRVSVIIGE-DYQLKKSILRDYLTN--KKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      +..++...... .... +...+...+...+.+  +++||||||+|+ ...+.    .+   .+|++||||||++.++..+
T Consensus       203 ~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~----~l---~~~~~ilvTsR~~~~~~~~  273 (591)
T 1z6t_A          203 CTRLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLK----AF---DSQCQILLTTRDKSVTDSV  273 (591)
T ss_dssp             HHHHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHH----TT---CSSCEEEEEESCGGGGTTC
T ss_pred             HHHhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHH----Hh---cCCCeEEEECCCcHHHHhc
Confidence            44554211110 1122 677788888888866  799999999999 64433    33   4589999999999987765


Q ss_pred             hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      . +....+ .++      +|  +.+||++||...++...       +.+.+.+.+|+ +|+|.++
T Consensus       274 ~-~~~~~v~~l~------~L--~~~ea~~L~~~~~~~~~-------~~~~~~~~~i~~~~~G~PL  322 (591)
T 1z6t_A          274 M-GPKYVVPVES------SL--GKEKGLEILSLFVNMKK-------ADLPEQAHSIIKECKGSPL  322 (591)
T ss_dssp             C-SCEEEEECCS------SC--CHHHHHHHHHHHHTSCG-------GGSCTHHHHHHHHHTTCHH
T ss_pred             C-CCceEeecCC------CC--CHHHHHHHHHHHhCCCc-------ccccHHHHHHHHHhCCCcH
Confidence            1 111223 346      89  99999999999997421       11245678999 9999764

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.52  E-value=6.6e-15  Score=118.96  Aligned_cols=78  Identities=12%  Similarity=0.199  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH----hHHHhchhhcCCCcccchhHHHHHHHHHHHHHHhHHHHHhhh
Q 015752           46 IVTTLLGKYEVDMAR--HLFQLLREDFDDSNISL----PFLQLLDLEESDEEDVETADILEILEDINDFVHESEEAIDTY  119 (401)
Q Consensus        46 ~v~~~l~kl~~~l~~--~~~~~~~~~l~~L~~el----~~L~~ae~~~~~~~~~~~~~v~~Wl~~lr~~a~d~eD~lD~~  119 (401)
                      +++++++||.+++.+  .++.++++++++|+++|    +||.+++.......+   +.++.|+++||++|||+|||||+|
T Consensus         2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d---~~vk~W~~~vrdlaYD~ED~iD~f   78 (115)
T 3qfl_A            2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLD---SQDKLWADEVRELSYVIEDVVDKF   78 (115)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577899999999998  89999999999999999    999999987311566   899999999999999999999999


Q ss_pred             hhhhhhc
Q 015752          120 FTNIMQQ  126 (401)
Q Consensus       120 ~~~~~~~  126 (401)
                      .++....
T Consensus        79 ~~~~~~~   85 (115)
T 3qfl_A           79 LVQVDGI   85 (115)
T ss_dssp             HHHHHHC
T ss_pred             HHHhccc
Confidence            9988653

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.43  E-value=4.7e-13  Score=131.72  Aligned_cols=173  Identities=17%  Similarity=0.107  Sum_probs=115.9

Q ss_pred             CccccccccHHHHHHHH-hc--CC--CCceEEEE--EcCCCCchHHHHHHhhcccCccc-----ccC-eEEEEEcCCCCC
Q 015752          186 LDISHFERGREELFDLL-IE--GS--SGLSVVAI--LDSGGFDKTAFAADTYNNNHVKF-----YFD-CHAWVRVSLDYD  252 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~-----~F~-~~~wv~vs~~~~  252 (401)
                      ..++||+.++++|.++| ..  ..  .....+.|  +|++|+|||||++.+++.  ...     .|. .++|++.....+
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   99 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPN   99 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCC
Confidence            78999999999999988 42  11  23456666  999999999999999983  322     123 467888777778


Q ss_pred             HHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC--CceEEEEEeCCCC-Cc------hhHHHHHhhCCCC---C-
Q 015752          253 FRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT--NKKYFIVLDDVFD-DS------EIWIDVEELLPDD---E-  319 (401)
Q Consensus       253 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~~------~~~~~l~~~l~~~---~-  319 (401)
                      ...++..++.+++.....   ...+...+...+.+.+.  +++++|||||++. +.      +.+..+...+...   . 
T Consensus       100 ~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~  176 (412)
T 1w5s_A          100 LYTILSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG  176 (412)
T ss_dssp             HHHHHHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred             HHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence            889999999998654211   01145566666776664  6899999999977 21      3344443333211   2 


Q ss_pred             -CCcEEEEecCChhHHhhch------hCCCcc-eecccccCCCCCCCChHHHHHHHHHhh
Q 015752          320 -NGSRVFITVTDPDLLASLE------MENGEK-IRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       320 -~gs~iivTTR~~~v~~~~~------~~~~~~-~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                       .+..+|+||+...+...+.      ...... +.+.      ||  +.++++++|...+
T Consensus       177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~------~l--~~~e~~~ll~~~~  228 (412)
T 1w5s_A          177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP------AY--KSRELYTILEQRA  228 (412)
T ss_dssp             CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECC------CC--CHHHHHHHHHHHH
T ss_pred             CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeC------CC--CHHHHHHHHHHHH
Confidence             3455888887665432210      011122 5888      99  9999999998764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.39  E-value=2.1e-12  Score=123.96  Aligned_cols=189  Identities=12%  Similarity=0.100  Sum_probs=120.0

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC------CCHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD------YDFRRILDD  259 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~------~~~~~~~~~  259 (401)
                      ..|+||+.++++|.+++..+    +++.|+|++|+|||||++.+++..      . .+|++....      .+...++..
T Consensus        12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~   80 (350)
T 2qen_A           12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKE   80 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred             HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHH
Confidence            67999999999999998752    689999999999999999998732      1 677776443      255666666


Q ss_pred             HHHHcCCC------------C-CCccccCc-CHHHHHHHHHHHcCC-ceEEEEEeCCCC-Cc-------hhHHHHHhhCC
Q 015752          260 IIKSVIPP------------S-RVSVIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVFD-DS-------EIWIDVEELLP  316 (401)
Q Consensus       260 i~~~l~~~------------~-~~~~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~~-~~-------~~~~~l~~~l~  316 (401)
                      +...+...            . ........ +...+...+.+.... ++++|||||++. +.       ..+..|...+.
T Consensus        81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~  160 (350)
T 2qen_A           81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD  160 (350)
T ss_dssp             HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence            66655420            0 00001111 556666677666643 389999999977 21       22333333222


Q ss_pred             CCCCCcEEEEecCChhHHhhc----h----h-CCCc-ceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHH
Q 015752          317 DDENGSRVFITVTDPDLLASL----E----M-ENGE-KIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFR  386 (401)
Q Consensus       317 ~~~~gs~iivTTR~~~v~~~~----~----~-~~~~-~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~  386 (401)
                      . ..+.++|+|++........    .    . +... .+.+.      ||  +.+|+.+++...+......  ..    .
T Consensus       161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~------pl--~~~e~~~~l~~~~~~~~~~--~~----~  225 (350)
T 2qen_A          161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVK------PF--DKDTSVEFLKRGFREVNLD--VP----E  225 (350)
T ss_dssp             H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECC------CC--CHHHHHHHHHHHHHTTTCC--CC----H
T ss_pred             h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCC------CC--CHHHHHHHHHHHHHHcCCC--CC----H
Confidence            2 2478899998876542210    0    0 1112 33888      99  9999999998865321111  11    3


Q ss_pred             HHHHHHh-ccCCCCC
Q 015752          387 QLGDKFV-LCWSYLF  400 (401)
Q Consensus       387 ~i~~~i~-~C~~~l~  400 (401)
                      +....|+ .|+|+++
T Consensus       226 ~~~~~i~~~tgG~P~  240 (350)
T 2qen_A          226 NEIEEAVELLDGIPG  240 (350)
T ss_dssp             HHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCCHH
Confidence            4567778 8888753

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.31  E-value=1.5e-11  Score=119.91  Aligned_cols=172  Identities=13%  Similarity=-0.010  Sum_probs=116.4

Q ss_pred             CccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcccc--------cCeEEEEEcCCCC-CHH
Q 015752          186 LDISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY--------FDCHAWVRVSLDY-DFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~  254 (401)
                      ..++||+.+++++.++|..  .......+.|+|++|+|||+||+.+++.  ....        ....+|++.+... +..
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   97 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQ   97 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence            6799999999999988864  2344568999999999999999999983  3211        2356788877666 788


Q ss_pred             HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-Cchh-HHH-HHhhCCCCCCCcEEEEecCC
Q 015752          255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEI-WID-VEELLPDDENGSRVFITVTD  330 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~-~~~-l~~~l~~~~~gs~iivTTR~  330 (401)
                      .++..++..+.....   .... +...+...+.+.+..++.+||||+++. .... .+. +...+... .+..+|+||+.
T Consensus        98 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~  173 (384)
T 2qby_B           98 AVLSSLAGKLTGFSV---PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND  173 (384)
T ss_dssp             HHHHHHHHHHHCSCC---CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred             HHHHHHHHHhcCCCC---CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence            888888888733211   1112 456677788888877666999999976 2111 222 22222212 57888999887


Q ss_pred             hhHH----hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          331 PDLL----ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       331 ~~v~----~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ....    ......-...+.++      |+  +.++..++|...+
T Consensus       174 ~~~~~~l~~~l~sr~~~~i~l~------~l--~~~~~~~il~~~~  210 (384)
T 2qby_B          174 INVRDYMEPRVLSSLGPSVIFK------PY--DAEQLKFILSKYA  210 (384)
T ss_dssp             TTTTTTSCHHHHHTCCCEEEEC------CC--CHHHHHHHHHHHH
T ss_pred             CchHhhhCHHHHhcCCCeEEEC------CC--CHHHHHHHHHHHH
Confidence            5321    11100112244999      99  9999999999986

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.29  E-value=1.3e-11  Score=118.66  Aligned_cols=166  Identities=13%  Similarity=0.153  Sum_probs=102.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC-----CCHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD-----YDFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i  260 (401)
                      ..|+||+.+++.|.+ +..     +++.|+|++|+|||+|++.+++.  ...   ..+|++....     .+...++..+
T Consensus        13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l   81 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLEL   81 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred             HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHH
Confidence            789999999999999 643     58999999999999999999874  222   2578886642     3444444444


Q ss_pred             HHHcC-------------CCC-----CC-cccc-----Cc-CHHHHHHHHHHHcCCceEEEEEeCCCC-Cc---hhHHHH
Q 015752          261 IKSVI-------------PPS-----RV-SVII-----GE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DS---EIWIDV  311 (401)
Q Consensus       261 ~~~l~-------------~~~-----~~-~~~~-----~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~---~~~~~l  311 (401)
                      ...+.             ...     .. ....     .. ....+...+.+... ++++|||||++. +.   ..|..+
T Consensus        82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~  160 (357)
T 2fna_A           82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA  160 (357)
T ss_dssp             HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred             HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence            43321             000     00 0000     11 45556666655433 499999999966 21   223222


Q ss_pred             HhhCCCCCCCcEEEEecCChhHHhhc--------hhC-CC-cceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          312 EELLPDDENGSRVFITVTDPDLLASL--------EME-NG-EKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       312 ~~~l~~~~~gs~iivTTR~~~v~~~~--------~~~-~~-~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ...+.+...+.++|+|++........        ... .. ..+.+.      ||  +.+|+.+++...+
T Consensus       161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~------~l--~~~e~~~~l~~~~  222 (357)
T 2fna_A          161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELK------PF--SREEAIEFLRRGF  222 (357)
T ss_dssp             HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEEC------CC--CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecC------CC--CHHHHHHHHHHHH
Confidence            22222222367899999987642211        001 11 233889      99  9999999998865

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.28  E-value=2.1e-11  Score=110.06  Aligned_cols=191  Identities=11%  Similarity=-0.001  Sum_probs=107.8

Q ss_pred             CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          185 RLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      +.+++|++..++.+..++..+. ....+.|+|++|+||||||+.+++.......+..      ........ ...+....
T Consensus        22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~   93 (250)
T 1njg_A           22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGR   93 (250)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTC
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccC
Confidence            3789999999999999997643 2357889999999999999999873221111100      00000000 01111000


Q ss_pred             CCCCCCccccCc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-Hhh
Q 015752          265 IPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-LAS  336 (401)
Q Consensus       265 ~~~~~~~~~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~  336 (401)
                      ............ ....+. .+.+.+     .+++.+|||||++. +...++.+...+.....+..+|+||+.... ...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~  172 (250)
T 1njg_A           94 FVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT  172 (250)
T ss_dssp             CSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred             CcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence            000000000000 112222 222222     35689999999976 567778887777655567888888876542 111


Q ss_pred             chhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          337 LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      .. .....+.++      ++  +.++..+++...+.....   ...   .+....|+ .|+|.+
T Consensus       173 l~-~r~~~i~l~------~l--~~~e~~~~l~~~~~~~~~---~~~---~~~~~~l~~~~~G~~  221 (250)
T 1njg_A          173 IL-SRCLQFHLK------AL--DVEQIRHQLEHILNEEHI---AHE---PRALQLLARAAEGSL  221 (250)
T ss_dssp             HH-TTSEEEECC------CC--CHHHHHHHHHHHHHHTTC---CBC---HHHHHHHHHHHTTCH
T ss_pred             HH-HHhhhccCC------CC--CHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHHcCCCH
Confidence            10 122333899      99  999999999988742111   111   23456677 777754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.27  E-value=2.8e-11  Score=117.65  Aligned_cols=172  Identities=14%  Similarity=0.017  Sum_probs=114.9

Q ss_pred             CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCcccc------cCeEEEEEcCCCCCHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY------FDCHAWVRVSLDYDFRRIL  257 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~~~  257 (401)
                      ..++||+.+++++..++...  ......+.|+|++|+||||||+.+++.  ....      -...+|++.....+...++
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   96 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVA   96 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence            68999999999999998542  344567889999999999999999873  3221      1246788888888888999


Q ss_pred             HHHHHHcCCCCCCccccCc-CHHHHHHHHHHHc--CCceEEEEEeCCCC-Cch--hHHHH---HhhCCCC--CCCcEEEE
Q 015752          258 DDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVFD-DSE--IWIDV---EELLPDD--ENGSRVFI  326 (401)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDdv~~-~~~--~~~~l---~~~l~~~--~~gs~iiv  326 (401)
                      ..++.+++....    ... +...+...+.+.+  .+++.+||||+++. ...  ..+.+   .......  ..+..+|.
T Consensus        97 ~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~  172 (387)
T 2v1u_A           97 SAIAEAVGVRVP----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG  172 (387)
T ss_dssp             HHHHHHHSCCCC----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred             HHHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence            999999865422    122 4666667777776  35689999999976 211  22223   2222211  34567777


Q ss_pred             ecCChhHHh----hchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          327 TVTDPDLLA----SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       327 TTR~~~v~~----~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ||+......    .......... .++      |+  +.++..+++...+
T Consensus       173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~------~l--~~~~~~~il~~~~  214 (387)
T 2v1u_A          173 ITNSLGFVENLEPRVKSSLGEVELVFP------PY--TAPQLRDILETRA  214 (387)
T ss_dssp             ECSCSTTSSSSCHHHHTTTTSEECCBC------CC--CHHHHHHHHHHHH
T ss_pred             EECCCchHhhhCHHHHhcCCCeEEeeC------CC--CHHHHHHHHHHHH
Confidence            777653211    1100112224 888      99  9999999999885

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.25  E-value=8.9e-11  Score=114.35  Aligned_cols=173  Identities=18%  Similarity=0.188  Sum_probs=122.4

Q ss_pred             CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhcccCccccc-CeEEEEEcCCCCCHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF-DCHAWVRVSLDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i  260 (401)
                      ..++||+.+++++.+++..    .....+.+.|+|++|+|||||++.+++.  ..... ...+|++.+...+...++..+
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l   94 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI   94 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence            6799999999999998865    2222348899999999999999999873  33321 256778877777888999999


Q ss_pred             HHHcCCCCCCccccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-CchhHHHHHhhCCCCC----CCcEEEEecCChh
Q 015752          261 IKSVIPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-DSEIWIDVEELLPDDE----NGSRVFITVTDPD  332 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~----~gs~iivTTR~~~  332 (401)
                      +..++....    ... +...+...+.+.+.  +++.+||||+++. +......|...+....    .+..||+||+...
T Consensus        95 ~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~  170 (389)
T 1fnn_A           95 ARSLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA  170 (389)
T ss_dssp             HHHTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred             HHHhCccCC----CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence            998865421    112 45566666666653  6789999999977 5666777777664422    4677888887765


Q ss_pred             HHhhch----hC-CCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          333 LLASLE----ME-NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       333 v~~~~~----~~-~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ......    .. ....+.+.      |+  +.++..+++...+.
T Consensus       171 ~~~~l~~~~~~r~~~~~i~~~------pl--~~~~~~~~l~~~~~  207 (389)
T 1fnn_A          171 VLNNLDPSTRGIMGKYVIRFS------PY--TKDQIFDILLDRAK  207 (389)
T ss_dssp             HHHTSCHHHHHHHTTCEEECC------CC--BHHHHHHHHHHHHH
T ss_pred             HHHHhCHHhhhcCCCceEEeC------CC--CHHHHHHHHHHHHH
Confidence            433220    00 11234888      99  99999999998863

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.22  E-value=1.2e-11  Score=120.05  Aligned_cols=172  Identities=15%  Similarity=0.122  Sum_probs=115.4

Q ss_pred             CccccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhcccCccccc---CeEEEEEcCCCCCHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF---DCHAWVRVSLDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i  260 (401)
                      ..++||+.+++.+.+++...  ......+.|+|++|+|||||++.+++  .....+   ...+|++.....+...++..+
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i   97 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADL   97 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence            78999999999999988742  34456888999999999999999988  343332   256778776666777888888


Q ss_pred             HHHcCCCCCCccccCc-CHHHHHHHHHHHcC--CceEEEEEeCCCC-C----chhHHHHHhhCCC-CCCCcEEEEecCCh
Q 015752          261 IKSVIPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-D----SEIWIDVEELLPD-DENGSRVFITVTDP  331 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~----~~~~~~l~~~l~~-~~~gs~iivTTR~~  331 (401)
                      +.+++....    ... +...+...+.+.+.  +++.+||||+++. .    ...+..+...+.. ...+..+|+||+..
T Consensus        98 ~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~  173 (386)
T 2qby_A           98 LESLDVKVP----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV  173 (386)
T ss_dssp             TTTTSCCCC----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred             HHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence            887754321    111 45565666666664  4589999999966 1    3344445444321 23356678888766


Q ss_pred             hHHhhc----hhCCC-cceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          332 DLLASL----EMENG-EKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       332 ~v~~~~----~~~~~-~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      .....+    ..... ..+.++      |+  +.++..++|...+
T Consensus       174 ~~~~~~~~~~~~r~~~~~i~l~------~l--~~~~~~~il~~~~  210 (386)
T 2qby_A          174 KFVDLLDPRVKSSLSEEEIIFP------PY--NAEELEDILTKRA  210 (386)
T ss_dssp             GGGGGCTTHHHHTTTTEEEEEC------CC--CHHHHHHHHHHHH
T ss_pred             ChHhhhCHHHhccCCCeeEEeC------CC--CHHHHHHHHHHHH
Confidence            432222    00112 234999      99  9999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.19  E-value=1.7e-10  Score=102.69  Aligned_cols=155  Identities=10%  Similarity=0.031  Sum_probs=97.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-ccC-eEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFD-CHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .+++|++..++.+.+++....  ...+.|+|++|+|||+||+.+++.  ... .+. ..+.++.+.......+...+...
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKIKEF   92 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHHHHHH
Confidence            789999999999999997643  233889999999999999999873  211 122 23344444333332222211111


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-HhhchhCC
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-LASLEMEN  341 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~~~~~~  341 (401)
                      .....                   ...+++.+|||||++. +...++.+...+.....++++|+||+.... ..... ..
T Consensus        93 ~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~-~r  152 (226)
T 2chg_A           93 ARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ-SR  152 (226)
T ss_dssp             HTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-TT
T ss_pred             hcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH-Hh
Confidence            11100                   0125789999999977 455566666665544557788888876531 11110 12


Q ss_pred             CcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          342 GEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       342 ~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ...+.+.      ++  +.++...++...+.
T Consensus       153 ~~~i~~~------~~--~~~~~~~~l~~~~~  175 (226)
T 2chg_A          153 CAVFRFK------PV--PKEAMKKRLLEICE  175 (226)
T ss_dssp             SEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             CceeecC------CC--CHHHHHHHHHHHHH
Confidence            2334888      99  99999999998873

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.99  E-value=9.9e-10  Score=104.10  Aligned_cols=176  Identities=12%  Similarity=0.089  Sum_probs=104.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-ccC-eEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFD-CHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .+++|++..++.+.+++..+.  ...+.|+|++|+|||++|+.+++.  ... .+. ..++++.+....... +.+++..
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~   95 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRNQIKH   95 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence            789999999999999987643  233889999999999999999873  211 111 234444433322221 1222221


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhC
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEME  340 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~  340 (401)
                      +...                  ...+ .+++.+|||||++. ....++.|...+.....++++|+||+... +...+. .
T Consensus        96 ~~~~------------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~-s  156 (323)
T 1sxj_B           96 FAQK------------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ-S  156 (323)
T ss_dssp             HHHB------------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH-T
T ss_pred             HHhc------------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH-h
Confidence            1100                  0011 35689999999977 45555666655544455778888887643 111110 1


Q ss_pred             CCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          341 NGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       341 ~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      ....+.+.      ++  +.++..+++...+...   +....   .+....|+ .|+|.+
T Consensus       157 r~~~i~~~------~~--~~~~~~~~l~~~~~~~---~~~~~---~~~~~~l~~~~~G~~  202 (323)
T 1sxj_B          157 QCAILRYS------KL--SDEDVLKRLLQIIKLE---DVKYT---NDGLEAIIFTAEGDM  202 (323)
T ss_dssp             TSEEEECC------CC--CHHHHHHHHHHHHHHH---TCCBC---HHHHHHHHHHHTTCH
T ss_pred             hceEEeec------CC--CHHHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHcCCCH
Confidence            12233888      99  9999999999876321   11111   23445666 677754

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.80  E-value=6.5e-09  Score=98.59  Aligned_cols=153  Identities=12%  Similarity=0.074  Sum_probs=94.8

Q ss_pred             CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccc-cC-eEEEEEcCCCCCHHHHHHHHHH
Q 015752          185 RLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY-FD-CHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      +.+++|++..++.+..++..+.  ...+.|+|++|+||||+|+.+++.  +... +. ..+.++.+...... .+..   
T Consensus        24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~---   95 (327)
T 1iqp_A           24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIRE---   95 (327)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHH---
T ss_pred             HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHH---
Confidence            3789999999999999987642  334889999999999999999873  2111 11 22333322211000 0000   


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHH--c-CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChhH-Hhhc
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDY--L-TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPDL-LASL  337 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~~  337 (401)
                                        ........  + .+++.+||+|+++. ....++.|...+.....++++|+||....- ....
T Consensus        96 ------------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l  157 (327)
T 1iqp_A           96 ------------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI  157 (327)
T ss_dssp             ------------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred             ------------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHH
Confidence                              11111111  1 25788999999977 556677777666555567888888876531 1111


Q ss_pred             hhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          338 EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       338 ~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      . .....+.+.      |+  +.++...++...+.
T Consensus       158 ~-sr~~~~~~~------~l--~~~~~~~~l~~~~~  183 (327)
T 1iqp_A          158 Q-SRCAIFRFR------PL--RDEDIAKRLRYIAE  183 (327)
T ss_dssp             H-HTEEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             H-hhCcEEEec------CC--CHHHHHHHHHHHHH
Confidence            0 011233888      99  99999999998874

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.76  E-value=9.5e-08  Score=90.51  Aligned_cols=172  Identities=10%  Similarity=0.031  Sum_probs=103.7

Q ss_pred             ccccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhcccCcc---cccC--eEEEEEcCCCCCHHHHHHH
Q 015752          187 DISHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYNNNHVK---FYFD--CHAWVRVSLDYDFRRILDD  259 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~~~~  259 (401)
                      .+.||++++++|...|..  .......+.|+|++|.|||++++.+++.....   ....  ..+.++.....+...++..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~  100 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK  100 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence            378999999999988865  24456778899999999999999999843211   1111  3556666677788899999


Q ss_pred             HHHHcCCCCCCccccCcCHHHHHHHHHHH--cCCceEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCCh---h
Q 015752          260 IIKSVIPPSRVSVIIGEDYQLKKSILRDY--LTNKKYFIVLDDVFD-D-SEIWIDVEELLPDDENGSRVFITVTDP---D  332 (401)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~iivTTR~~---~  332 (401)
                      |++++.+...   ........+...+...  -.+++++++||++.. . .+.+-.+............||.++...   .
T Consensus       101 I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~  177 (318)
T 3te6_A          101 IWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR  177 (318)
T ss_dssp             HHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred             HHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence            9999966421   1111344444444432  246789999999977 2 222222222111111122333334332   1


Q ss_pred             --H----HhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          333 --L----LASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       333 --v----~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                        +    ...+   ....+.+.      |+  +.++-.+++..++.
T Consensus       178 ~~L~~~v~SR~---~~~~i~F~------pY--t~~el~~Il~~Rl~  212 (318)
T 3te6_A          178 EQINIMPSLKA---HFTEIKLN------KV--DKNELQQMIITRLK  212 (318)
T ss_dssp             HHHHTCHHHHT---TEEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             hhcchhhhccC---CceEEEeC------CC--CHHHHHHHHHHHHH
Confidence              1    1122   11234888      99  99999999999873

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.67  E-value=1.1e-07  Score=89.79  Aligned_cols=153  Identities=10%  Similarity=0.045  Sum_probs=94.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      .+++|++..++.+.+++..+  ....+.++|++|+|||++|+.+++... ...+. ..+.++.+.....           
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-----------   82 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI-----------   82 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-----------
T ss_pred             HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-----------
Confidence            78999999999998888653  233388999999999999999987310 11111 1233333321110           


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHH--c-CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchh
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDY--L-TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEM  339 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~  339 (401)
                                . ........+...  + .+++.++|+|++.. .....+.|...+.....++++|+||.... +..... 
T Consensus        83 ----------~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~-  150 (319)
T 2chq_A           83 ----------D-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ-  150 (319)
T ss_dssp             ----------T-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH-
T ss_pred             ----------H-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH-
Confidence                      0 111111111111  1 25688999999976 45666777777766566788888876653 211111 


Q ss_pred             CCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      .....+.+.      ++  +.++...++...+.
T Consensus       151 sr~~~i~~~------~~--~~~~~~~~l~~~~~  175 (319)
T 2chq_A          151 SRCAVFRFK------PV--PKEAMKKRLLEICE  175 (319)
T ss_dssp             TTCEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             hhCeEEEec------CC--CHHHHHHHHHHHHH
Confidence            112233888      99  99999999988774

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.64  E-value=1.5e-07  Score=90.98  Aligned_cols=169  Identities=12%  Similarity=0.006  Sum_probs=94.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|++..++.+...+..+. ....+.|+|++|+||||+|+.+.+.......+.       ..++........+.....
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~   87 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRF   87 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred             hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCC
Confidence            679999999999999987642 234678999999999999999986322111110       000000000111111000


Q ss_pred             CCCCCcc---ccCc-CHHHHHHHHHHH-cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhch
Q 015752          266 PPSRVSV---IIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLE  338 (401)
Q Consensus       266 ~~~~~~~---~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~  338 (401)
                      .......   .... ....+...+... ..+++.+||+|++.. +...++.|...+.....+..+|++|.... +.....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~  167 (373)
T 1jr3_A           88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL  167 (373)
T ss_dssp             SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred             CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence            0000000   0000 222222222111 135678999999976 56667777777655555677777776543 211111


Q ss_pred             hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          339 MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       339 ~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                       .....+.+.      ++  +.++...++...+
T Consensus       168 -sr~~~i~~~------~l--~~~~~~~~l~~~~  191 (373)
T 1jr3_A          168 -SRCLQFHLK------AL--DVEQIRHQLEHIL  191 (373)
T ss_dssp             -TTSEEEECC------CC--CHHHHHHHHHHHH
T ss_pred             -hheeEeeCC------CC--CHHHHHHHHHHHH
Confidence             122233888      99  9999999998776

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.52  E-value=2.6e-07  Score=87.60  Aligned_cols=147  Identities=14%  Similarity=0.043  Sum_probs=86.1

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+++|++..+..+..++..   .......+.|+|++|+|||+||+.+++.  ...   ..++++.+.......       
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~-------   79 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD-------   79 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH-------
T ss_pred             HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH-------
Confidence            7899999999988888753   1223456789999999999999999872  221   223444332222111       


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC------------------CCcE
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE------------------NGSR  323 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~------------------~gs~  323 (401)
                                        +...+...+ .+..+|+||++.. .......+...+....                  .+.+
T Consensus        80 ------------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (324)
T 1hqc_A           80 ------------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT  140 (324)
T ss_dssp             ------------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred             ------------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence                              111111111 3556899999977 4444454543332210                  2345


Q ss_pred             EEEecCChh-HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          324 VFITVTDPD-LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       324 iivTTR~~~-v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +|.||.... +..... .....+ .+.      ++  +.++...++...+.
T Consensus       141 ~i~~t~~~~~~~~~l~-~R~~~~i~l~------~~--~~~e~~~~l~~~~~  182 (324)
T 1hqc_A          141 LIGATTRPGLITAPLL-SRFGIVEHLE------YY--TPEELAQGVMRDAR  182 (324)
T ss_dssp             EEEEESCCSSCSCSTT-TTCSCEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             EEEeCCCcccCCHHHH-hcccEEEecC------CC--CHHHHHHHHHHHHH
Confidence            666655432 211111 112234 888      99  99999999988874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.49  E-value=5.9e-08  Score=83.97  Aligned_cols=45  Identities=11%  Similarity=0.064  Sum_probs=38.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..++||++.++++.+++...  ....+.|+|++|+|||+||+.+++.
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999998763  3456789999999999999999873

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.45  E-value=2.5e-07  Score=88.63  Aligned_cols=188  Identities=11%  Similarity=0.042  Sum_probs=102.7

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      .+++|++..++.+..++..+.  ...+.|+|++|+||||+|+.+.+.......+. ....++.+.......+ .+.+..+
T Consensus        37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  113 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNF  113 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHH
Confidence            789999999999999987642  22378999999999999999987321111122 2333343332232222 1211111


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCC
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENG  342 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~  342 (401)
                      ......  ... ..     .....-.+++-+|++|++.. +......|...+.......++|++|.... +...... ..
T Consensus       114 ~~~~~~--~~~-~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s-R~  184 (353)
T 1sxj_D          114 ARLTVS--KPS-KH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS-QC  184 (353)
T ss_dssp             HHSCCC--CCC-TT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-HS
T ss_pred             hhhccc--ccc-hh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc-cC
Confidence            100000  000 00     00111124567999999866 45555666655544445667777765443 2111100 11


Q ss_pred             cceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          343 EKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       343 ~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      ..+.+.      ++  +.++....+...+...   +....   .+....|+ .|+|++
T Consensus       185 ~~i~~~------~~--~~~~~~~~l~~~~~~~---~~~i~---~~~l~~l~~~~~G~~  228 (353)
T 1sxj_D          185 SKFRFK------AL--DASNAIDRLRFISEQE---NVKCD---DGVLERILDISAGDL  228 (353)
T ss_dssp             EEEECC------CC--CHHHHHHHHHHHHHTT---TCCCC---HHHHHHHHHHTSSCH
T ss_pred             ceEEeC------CC--CHHHHHHHHHHHHHHh---CCCCC---HHHHHHHHHHcCCCH
Confidence            234888      99  9999999999876421   11111   34455666 667654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.42  E-value=1.4e-06  Score=81.07  Aligned_cols=155  Identities=14%  Similarity=0.125  Sum_probs=88.4

Q ss_pred             CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .+++|.+..+++|.+.+...           -....-+.|+|++|+|||+||+.+++.  ....   .+.+..+.-    
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~----   87 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSEL----   87 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGG----
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHH----
Confidence            78999999999998877431           123456889999999999999999873  3222   222222111    


Q ss_pred             HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C-----------c---hhHHHHHhhCC--
Q 015752          255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D-----------S---EIWIDVEELLP--  316 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-----------~---~~~~~l~~~l~--  316 (401)
                                ...      ... ....+...+......++.+|+||++.. .           .   ..+..+...+.  
T Consensus        88 ----------~~~------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  151 (285)
T 3h4m_A           88 ----------VKK------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF  151 (285)
T ss_dssp             ----------CCC------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred             ----------HHh------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence                      000      011 122222233333345678999999953 0           1   11222222221  


Q ss_pred             CCCCCcEEEEecCChhHHhhchhC--CCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          317 DDENGSRVFITVTDPDLLASLEME--NGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       317 ~~~~gs~iivTTR~~~v~~~~~~~--~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      ....+..||.||.........-..  ..... .++      ++  +.++..++|...+..
T Consensus       152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~------~p--~~~~r~~il~~~~~~  203 (285)
T 3h4m_A          152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVP------AP--DEKGRLEILKIHTRK  203 (285)
T ss_dssp             CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEEC------CC--CHHHHHHHHHHHHhc
Confidence            123456778888765321110001  22234 777      88  999999999988754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.40  E-value=1.5e-07  Score=84.84  Aligned_cols=143  Identities=10%  Similarity=0.056  Sum_probs=79.4

Q ss_pred             Ccccccc---ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFE---RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+++|.+   ..++.+..++..+  ....+.|+|++|+||||||+.+++  ........+.|++.+.-..          
T Consensus        28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~----------   93 (242)
T 3bos_A           28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHAS----------   93 (242)
T ss_dssp             TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGG----------
T ss_pred             hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHH----------
Confidence            6777743   4445555555432  356788999999999999999987  3333333456666533110          


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cchh--HHHHHhhCCCC-CCC-cEEEEecCChh-----
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEI--WIDVEELLPDD-ENG-SRVFITVTDPD-----  332 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~--~~~l~~~l~~~-~~g-s~iivTTR~~~-----  332 (401)
                      .+          ....        +.+ .++.+|||||++. ....  .+.+...+... ..+ .++|+||+...     
T Consensus        94 ~~----------~~~~--------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~  154 (242)
T 3bos_A           94 IS----------TALL--------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF  154 (242)
T ss_dssp             SC----------GGGG--------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred             HH----------HHHH--------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence            00          0000        001 3567999999976 2222  23333332211 112 24777766321     


Q ss_pred             ----HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          333 ----LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       333 ----v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                          +...+   ....+ .+.      ++  +.++..+++...+.
T Consensus       155 ~~~~l~~r~---~~~~~i~l~------~~--~~~~~~~~l~~~~~  188 (242)
T 3bos_A          155 VLPDLVSRM---HWGLTYQLQ------PM--MDDEKLAALQRRAA  188 (242)
T ss_dssp             CCHHHHHHH---HHSEEEECC------CC--CGGGHHHHHHHHHH
T ss_pred             hhhhhhhHh---hcCceEEeC------CC--CHHHHHHHHHHHHH
Confidence                22111   11134 888      99  99999999998873

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.38  E-value=2.3e-06  Score=81.29  Aligned_cols=155  Identities=17%  Similarity=0.163  Sum_probs=87.2

Q ss_pred             CccccccccHHHHHHHHh----------cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLLI----------EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.+..++.|.+.+.          ......+-+.|+|++|+|||+||+.+++  .....|   +.++.      ..
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~------~~   86 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSS------SD   86 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEH------HH
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEch------HH
Confidence            789999999999988773          1122345688999999999999999988  332222   22222      11


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHH-HHHcCCceEEEEEeCCCC-Cc-----------hhHHHHHhhCC---CCC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSIL-RDYLTNKKYFIVLDDVFD-DS-----------EIWIDVEELLP---DDE  319 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~L~~kr~LlVlDdv~~-~~-----------~~~~~l~~~l~---~~~  319 (401)
                      +    ....         .. ........+ ...-..++.+|+||++.. ..           .....+...+.   ...
T Consensus        87 l----~~~~---------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~  152 (322)
T 3eie_A           87 L----VSKW---------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS  152 (322)
T ss_dssp             H----HTTT---------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred             H----hhcc---------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence            1    1110         01 122222222 222235678999999964 11           11233333322   223


Q ss_pred             CCcEEEEecCChhHH-hhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          320 NGSRVFITVTDPDLL-ASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       320 ~gs~iivTTR~~~v~-~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      .+..||.||...... ..+...-...+.+.      +.  +.++-.++|...+..
T Consensus       153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~------~p--~~~~r~~il~~~~~~  199 (322)
T 3eie_A          153 QGVLVLGATNIPWQLDSAIRRRFERRIYIP------LP--DLAARTTMFEINVGD  199 (322)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHCCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred             CceEEEEecCChhhCCHHHHcccCeEEEeC------CC--CHHHHHHHHHHHhcc
Confidence            455666677654321 11100112223677      77  999999999998864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.38  E-value=1.3e-05  Score=76.08  Aligned_cols=156  Identities=21%  Similarity=0.205  Sum_probs=84.9

Q ss_pred             CccccccccHHHHHHHHhc---------C-CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLLIE---------G-SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.+..++.|.+.+..         + ....+-+.|+|++|+|||+||+.+++... ..   ..+.++.+.-.    
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~----   83 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV----   83 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC----
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH----
Confidence            7899999988888877631         1 12346788999999999999999998320 11   12223332111    


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-------ch----hHHHHHhhCCC---CCC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-------SE----IWIDVEELLPD---DEN  320 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-------~~----~~~~l~~~l~~---~~~  320 (401)
                                ..     -.......+...+...-..++.+|+||++.. .       ..    ....+...+..   ...
T Consensus        84 ----------~~-----~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~  148 (322)
T 1xwi_A           84 ----------SK-----WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND  148 (322)
T ss_dssp             ----------CS-----SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred             ----------hh-----hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence                      00     0010222222223323345788999999965 0       01    11222222221   223


Q ss_pred             CcEEEEecCChhH-HhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          321 GSRVFITVTDPDL-LASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       321 gs~iivTTR~~~v-~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      +..||.||..+.. -.... ...... .++      +.  +.++..++|...+..
T Consensus       149 ~v~vI~atn~~~~ld~al~-rRf~~~i~i~------~P--~~~~r~~il~~~l~~  194 (322)
T 1xwi_A          149 GILVLGATNIPWVLDSAIR-RRFEKRIYIP------LP--EPHARAAMFKLHLGT  194 (322)
T ss_dssp             TEEEEEEESCTTTSCHHHH-HTCCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred             CEEEEEecCCcccCCHHHH-hhcCeEEEeC------Cc--CHHHHHHHHHHHHhc
Confidence            4555556654421 11110 122233 777      77  889999999888754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.36  E-value=6.8e-07  Score=84.10  Aligned_cols=158  Identities=11%  Similarity=0.096  Sum_probs=87.7

Q ss_pred             ccccccccHHHHHHHHhc-------------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCH
Q 015752          187 DISHFERGREELFDLLIE-------------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDF  253 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  253 (401)
                      +++|.+..++.+.+.+..             .......+.|+|++|+|||+||+.+++...........-++.++..   
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---  108 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD---  108 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence            588998888888766542             1234456889999999999999988763211111111122222210   


Q ss_pred             HHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcE
Q 015752          254 RRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------DSEIWIDVEELLPDDENGSR  323 (401)
Q Consensus       254 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~  323 (401)
                               .+...     -.......+...+...   +..+|+||++..          .......|...+.....+..
T Consensus       109 ---------~l~~~-----~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  171 (309)
T 3syl_A          109 ---------DLVGQ-----YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV  171 (309)
T ss_dssp             ---------GTCCS-----STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred             ---------Hhhhh-----cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence                     11111     0111222222222222   345999999972          14445566655555555677


Q ss_pred             EEEecCChhHHhh------chhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          324 VFITVTDPDLLAS------LEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       324 iivTTR~~~v~~~------~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ||.||........      +.......+.++      ++  +.++-..++...+.
T Consensus       172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~------~~--~~~~~~~il~~~l~  218 (309)
T 3syl_A          172 VILAGYADRMENFFQSNPGFRSRIAHHIEFP------DY--SDEELFEIAGHMLD  218 (309)
T ss_dssp             EEEEECHHHHHHHHHHSTTHHHHEEEEEEEC------CC--CHHHHHHHHHHHHH
T ss_pred             EEEeCChHHHHHHHhhCHHHHHhCCeEEEcC------Cc--CHHHHHHHHHHHHH
Confidence            8888765432111      000011233888      99  99999999988764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.35  E-value=6.5e-06  Score=75.27  Aligned_cols=153  Identities=12%  Similarity=0.119  Sum_probs=83.3

Q ss_pred             CccccccccHHHHHHHHh---cCC-------CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLLI---EGS-------SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.+..++.+.+++.   ...       .....+.|+|++|+|||+||+.+++  .....   .+.++.+.-.+   
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~---   77 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVE---   77 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSS---
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHh---
Confidence            678999888877766542   111       2345678999999999999999987  33222   23333332111   


Q ss_pred             HHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCCCc-----------------hhHHHHHhhCCC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDDS-----------------EIWIDVEELLPD  317 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------------~~~~~l~~~l~~  317 (401)
                                       .... ....+...+.......+.+|+||++.. -                 .....+...+..
T Consensus        78 -----------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~-l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~  139 (262)
T 2qz4_A           78 -----------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTLNQLLVEMDG  139 (262)
T ss_dssp             -----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHT
T ss_pred             -----------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcch-hhccccccccCccchhHHHHHHHHHHHhhC
Confidence                             0111 222233333333345678999999965 1                 112233332222


Q ss_pred             --CCCCcEEEEecCChhHH-hhch-hCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          318 --DENGSRVFITVTDPDLL-ASLE-MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       318 --~~~gs~iivTTR~~~v~-~~~~-~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                        ...+..||.||...... .... .+..... .++      +.  +.++..+++...+.
T Consensus       140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~------~p--~~~~r~~il~~~~~  191 (262)
T 2qz4_A          140 MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID------LP--TLQERREIFEQHLK  191 (262)
T ss_dssp             CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC------SC--CHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC------Cc--CHHHHHHHHHHHHH
Confidence              12355666677655421 1110 0122233 777      77  99999999888763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.35  E-value=9.2e-07  Score=87.88  Aligned_cols=153  Identities=12%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             Cccc-ccccc--HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC--eEEEEEcCCCCCHHHHHHHH
Q 015752          186 LDIS-HFERG--REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSLDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i  260 (401)
                      .+|+ |....  ...+......... ...+.|+|++|+||||||+.+++  .....+.  .+++++.      ..+..++
T Consensus       105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~  175 (440)
T 2z4s_A          105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDL  175 (440)
T ss_dssp             GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHH
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHH
Confidence            5666 64433  3333433333222 56788999999999999999998  4433332  3445543      2334444


Q ss_pred             HHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc--hhHHHHHhhCCC-CCCCcEEEEecCCh-----
Q 015752          261 IKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS--EIWIDVEELLPD-DENGSRVFITVTDP-----  331 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~--~~~~~l~~~l~~-~~~gs~iivTTR~~-----  331 (401)
                      ...+...         ...    .+.+.+..+.-+|+|||+.. ..  ...+.+...+.. ...|..||+||.+.     
T Consensus       176 ~~~~~~~---------~~~----~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~  242 (440)
T 2z4s_A          176 VDSMKEG---------KLN----EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS  242 (440)
T ss_dssp             HHHHHTT---------CHH----HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred             HHHHHcc---------cHH----HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence            4444322         111    23333444677999999966 21  233444433321 13467888888763     


Q ss_pred             ----hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          332 ----DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       332 ----~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                          .+...+   ....+ .++      ++  +.++...++.+.+
T Consensus       243 ~l~~~L~sR~---~~g~~i~l~------~p--~~e~r~~iL~~~~  276 (440)
T 2z4s_A          243 EFQDRLVSRF---QMGLVAKLE------PP--DEETRKSIARKML  276 (440)
T ss_dssp             SCCHHHHHHH---HSSBCCBCC------CC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc---cCCeEEEeC------CC--CHHHHHHHHHHHH
Confidence                233323   22234 888      99  9999999999887

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.27  E-value=8.2e-06  Score=78.62  Aligned_cols=170  Identities=17%  Similarity=0.153  Sum_probs=93.1

Q ss_pred             CccccccccHHH---HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE----cCCCCCHHHHHH
Q 015752          186 LDISHFERGREE---LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR----VSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~  258 (401)
                      .+++|++..++.   +...+..+......+.|+|++|+|||+||+.+.+.  ...... .+.+.    .+........+.
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~~~~~  120 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKTEALT  120 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHHHHHH
T ss_pred             hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchhHHHH
Confidence            789999988766   45555544333467889999999999999999883  322111 11222    122334444444


Q ss_pred             HHHHHcCCCC---------------------C---Cc-cc-cCcCHHHHHHHHHHHc-----CCc----eEEEEEeCCCC
Q 015752          259 DIIKSVIPPS---------------------R---VS-VI-IGEDYQLKKSILRDYL-----TNK----KYFIVLDDVFD  303 (401)
Q Consensus       259 ~i~~~l~~~~---------------------~---~~-~~-~~~~~~~l~~~l~~~L-----~~k----r~LlVlDdv~~  303 (401)
                      +.+.......                     .   .. .. .......+...+.+..     .++    +.+|+||++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~  200 (368)
T 3uk6_A          121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM  200 (368)
T ss_dssp             HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred             HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence            4444321100                     0   00 00 0001122222222211     233    45999999977


Q ss_pred             -CchhHHHHHhhCCCCCCCcEEEEecCC-----------------hhHHhhchhCCCcceecccccCCCCCCCChHHHHH
Q 015752          304 -DSEIWIDVEELLPDDENGSRVFITVTD-----------------PDLLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQ  365 (401)
Q Consensus       304 -~~~~~~~l~~~l~~~~~gs~iivTTR~-----------------~~v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~  365 (401)
                       +.+....|...+...... .++++|..                 +.+...+     ..+.+.      ++  +.++..+
T Consensus       201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-----~~i~~~------~~--~~~e~~~  266 (368)
T 3uk6_A          201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL-----LIVSTT------PY--SEKDTKQ  266 (368)
T ss_dssp             SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE-----EEEEEC------CC--CHHHHHH
T ss_pred             cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc-----cEEEec------CC--CHHHHHH
Confidence             566677777777654433 34444431                 1222222     224788      99  9999999


Q ss_pred             HHHHhhC
Q 015752          366 FFILHYG  372 (401)
Q Consensus       366 Lf~~~a~  372 (401)
                      ++...+.
T Consensus       267 il~~~~~  273 (368)
T 3uk6_A          267 ILRIRCE  273 (368)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.27  E-value=3.5e-06  Score=80.33  Aligned_cols=146  Identities=12%  Similarity=0.017  Sum_probs=86.9

Q ss_pred             CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+++|++..++.+..++...   ......+.|+|++|+|||+||+.+++  .....|   +.++.+....          
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~----------   93 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEK----------   93 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCS----------
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccc----------
Confidence            78999999999998888642   33445688999999999999999987  332222   2232221111          


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC------------------CCcE
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE------------------NGSR  323 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~------------------~gs~  323 (401)
                                     .......+..  ..+..+|+||++.. .......|...+....                  ++..
T Consensus        94 ---------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T 3pfi_A           94 ---------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT  156 (338)
T ss_dssp             ---------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred             ---------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence                           1111111111  24567899999876 4444455544433221                  1245


Q ss_pred             EEEecCChh-HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          324 VFITVTDPD-LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       324 iivTTR~~~-v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      +|.||.... +..... ...... .+.      ++  +.++...++...+.
T Consensus       157 ~i~atn~~~~l~~~L~-~R~~~~i~l~------~~--~~~e~~~il~~~~~  198 (338)
T 3pfi_A          157 LIGATTRAGMLSNPLR-DRFGMQFRLE------FY--KDSELALILQKAAL  198 (338)
T ss_dssp             EEEEESCGGGSCHHHH-TTCSEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             EEEeCCCccccCHHHH-hhcCEEeeCC------Cc--CHHHHHHHHHHHHH
Confidence            665555432 111111 122234 899      99  99999999988774

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.26  E-value=8.3e-06  Score=78.60  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=84.8

Q ss_pred             CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.+..++.|.+.+..          .....+-|.|+|++|+|||+||+.+++  .....|   +.++.      ..
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~v~~------~~  119 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSS------SD  119 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EEEEH------HH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEeeH------HH
Confidence            7899999999999887731          112234578999999999999999998  332222   22222      11


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cch-----------hHHHHHhhC---CCCCC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSE-----------IWIDVEELL---PDDEN  320 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~-----------~~~~l~~~l---~~~~~  320 (401)
                      +    .......         ....+...+...-..++.+|+||++.. ...           ....+...+   .....
T Consensus       120 l----~~~~~g~---------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~  186 (355)
T 2qp9_X          120 L----VSKWMGE---------SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ  186 (355)
T ss_dssp             H----HSCC------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred             H----hhhhcch---------HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence            1    1111110         222222222222345789999999965 110           122232222   22233


Q ss_pred             CcEEEEecCChhH-HhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          321 GSRVFITVTDPDL-LASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       321 gs~iivTTR~~~v-~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      +..||.||..... ...+. ...... .+.      +.  +.++...+|...+..
T Consensus       187 ~v~vI~atn~~~~ld~al~-rRf~~~i~i~------~P--~~~~r~~il~~~l~~  232 (355)
T 2qp9_X          187 GVLVLGATNIPWQLDSAIR-RRFERRIYIP------LP--DLAARTTMFEINVGD  232 (355)
T ss_dssp             CEEEEEEESCGGGSCHHHH-HTCCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred             CeEEEeecCCcccCCHHHH-cccCEEEEeC------Cc--CHHHHHHHHHHHHhh
Confidence            5566667765421 11110 122233 777      77  899999999988754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.26  E-value=1.2e-06  Score=73.17  Aligned_cols=113  Identities=11%  Similarity=-0.072  Sum_probs=65.6

Q ss_pred             ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCC
Q 015752          187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIP  266 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~  266 (401)
                      +++|+...+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.... ..... + ++.+...+.             
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~-------------   65 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA-------------   65 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS-------------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc-------------
Confidence            5789999999999888542122234679999999999999999873211 11122 2 444332211             


Q ss_pred             CCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC
Q 015752          267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTD  330 (401)
Q Consensus       267 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~  330 (401)
                      .         ....   .+..   .+.-.|+||++.. +......|...+.......++|.||..
T Consensus        66 ~---------~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~  115 (145)
T 3n70_A           66 P---------QLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT  115 (145)
T ss_dssp             S---------CHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred             h---------hhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence            0         1111   1111   1234689999977 555556666665444445677777764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.25  E-value=5.2e-06  Score=78.66  Aligned_cols=140  Identities=14%  Similarity=0.115  Sum_probs=85.3

Q ss_pred             CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          185 RLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      +.+++|.+..++.+.+++..+. ...++.+.|++|+|||++|+.+++.  ..   ...+.++.+.. ... .+..++...
T Consensus        25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~~-~i~~~~~~~   96 (324)
T 3u61_B           25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KID-FVRGPLTNF   96 (324)
T ss_dssp             TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CHH-HHHTHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CHH-HHHHHHHHH
Confidence            3789999999999999987542 3457788899999999999999873  32   12344444332 222 222211111


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChh-----HHhhc
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-SEIWIDVEELLPDDENGSRVFITVTDPD-----LLASL  337 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~iivTTR~~~-----v~~~~  337 (401)
                      ....                   ...+++.+|+||++.. . .+..+.|...+.....++++|+||....     +...+
T Consensus        97 ~~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~  157 (324)
T 3u61_B           97 ASAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC  157 (324)
T ss_dssp             HHBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred             Hhhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence            0000                   0124788999999987 4 4455666655543334567888777643     22222


Q ss_pred             hhCCCcceecccccCCCCCCCChHHHH
Q 015752          338 EMENGEKIRLDSVLFGGPLIRLKHEAW  364 (401)
Q Consensus       338 ~~~~~~~~~l~~~~~~~~L~~~~~ea~  364 (401)
                           ..+.++      ++  +.++-.
T Consensus       158 -----~~i~~~------~~--~~~e~~  171 (324)
T 3u61_B          158 -----RVITFG------QP--TDEDKI  171 (324)
T ss_dssp             -----EEEECC------CC--CHHHHH
T ss_pred             -----cEEEeC------CC--CHHHHH
Confidence                 223777      88  887743

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.24  E-value=1.3e-05  Score=79.75  Aligned_cols=156  Identities=17%  Similarity=0.175  Sum_probs=85.7

Q ss_pred             CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.+..++.|.+.+..          .....+-+.|+|++|+|||+||+.+++.  .    ...-++.++...    
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~----  203 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD----  203 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence            7899999999988887631          0123467889999999999999999983  2    112233333321    


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc-----------hhHHHHHhhCCC---CCC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS-----------EIWIDVEELLPD---DEN  320 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~-----------~~~~~l~~~l~~---~~~  320 (401)
                      +.    ....+.      .......+....   -..++.+|+||++.. ..           .....+...+..   ...
T Consensus       204 l~----~~~~g~------~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~  270 (444)
T 2zan_A          204 LV----SKWLGE------SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND  270 (444)
T ss_dssp             ------------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred             HH----hhhcch------HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence            11    111111      000222222222   235678999999975 10           112334444432   134


Q ss_pred             CcEEEEecCChhHH-hhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          321 GSRVFITVTDPDLL-ASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       321 gs~iivTTR~~~v~-~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      +..||.||..+... ..+ ....... .+.      +.  +.++...+|...+..
T Consensus       271 ~v~vI~atn~~~~ld~al-~rRf~~~i~i~------~P--~~~~r~~il~~~l~~  316 (444)
T 2zan_A          271 GILVLGATNIPWVLDSAI-RRRFEKRIYIP------LP--EAHARAAMFRLHLGS  316 (444)
T ss_dssp             SCEEEEEESCGGGSCHHH-HTTCCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred             CEEEEecCCCccccCHHH-HhhcceEEEeC------Cc--CHHHHHHHHHHHHhc
Confidence            55666677654321 111 0122333 666      66  888888999888754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.24  E-value=7.9e-06  Score=78.82  Aligned_cols=46  Identities=13%  Similarity=0.104  Sum_probs=37.8

Q ss_pred             CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..++.|.+.+..          .......+.|+|++|+|||+||+.+++
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999887742          112356788999999999999999987

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.23  E-value=8.1e-07  Score=76.46  Aligned_cols=44  Identities=14%  Similarity=0.046  Sum_probs=38.1

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|++..++.+.+.+...  ....+.|+|++|+|||+||+.+++
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998753  345668999999999999999987

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.22  E-value=1.4e-06  Score=88.26  Aligned_cols=163  Identities=10%  Similarity=0.014  Sum_probs=90.3

Q ss_pred             CccccccccHHHHHHHHhcC---------------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC
Q 015752          186 LDISHFERGREELFDLLIEG---------------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD  250 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~  250 (401)
                      .+++|++..++++.+||...               ....+.+.|+|++|+||||+|+.+++.  .  .+ ..+.++.+..
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~  113 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV  113 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence            78999999999999999641               013468899999999999999999983  2  12 2344555544


Q ss_pred             CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C---chhHHHHHhhCCCCCCCcEEEE
Q 015752          251 YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D---SEIWIDVEELLPDDENGSRVFI  326 (401)
Q Consensus       251 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~---~~~~~~l~~~l~~~~~gs~iiv  326 (401)
                      .... ++...+........-..-+. ....     .....+++.+|+||++.. .   ...+..|...+...  +..||+
T Consensus       114 ~~~~-~~~~~i~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIl  184 (516)
T 1sxj_A          114 RSKT-LLNAGVKNALDNMSVVGYFK-HNEE-----AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLIL  184 (516)
T ss_dssp             CCHH-HHHHTGGGGTTBCCSTTTTT-C---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEE
T ss_pred             chHH-HHHHHHHHHhccccHHHHHh-hhhh-----hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEE
Confidence            4432 33333322211100000000 0000     001235788999999965 2   22234444443322  233555


Q ss_pred             ecCChh---HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          327 TVTDPD---LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       327 TTR~~~---v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      ++....   +....  .....+.+.      ++  +.++..+.+...+.
T Consensus       185 i~~~~~~~~l~~l~--~r~~~i~f~------~~--~~~~~~~~L~~i~~  223 (516)
T 1sxj_A          185 ICNERNLPKMRPFD--RVCLDIQFR------RP--DANSIKSRLMTIAI  223 (516)
T ss_dssp             EESCTTSSTTGGGT--TTSEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             EEcCCCCccchhhH--hceEEEEeC------CC--CHHHHHHHHHHHHH
Confidence            444322   22111  112223888      99  99999999888763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.21  E-value=1.1e-05  Score=77.15  Aligned_cols=167  Identities=12%  Similarity=0.095  Sum_probs=88.0

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc---Ccc-cccCe--------------------
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN---HVK-FYFDC--------------------  241 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~-~~F~~--------------------  241 (401)
                      .+++|.+...+.+.+++........ +.|+|++|+||||+++.++...   ... -.++.                    
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~   92 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY   92 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence            7899999988888888723222233 8899999999999999887621   100 00110                    


Q ss_pred             EEEEEcCCCC-CHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC
Q 015752          242 HAWVRVSLDY-DFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE  319 (401)
Q Consensus       242 ~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~  319 (401)
                      .+.+..+... ......++++..+.....    ..    ... .+.. +.+++-+++||++.. +......+...+....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~----~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~  162 (354)
T 1sxj_E           93 HLEITPSDMGNNDRIVIQELLKEVAQMEQ----VD----FQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYS  162 (354)
T ss_dssp             EEEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred             eEEecHhhcCCcchHHHHHHHHHHHHhcc----cc----ccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence            1111111100 000012222222211100    00    000 0000 234677999999987 6666666666554434


Q ss_pred             CCcEEEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          320 NGSRVFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       320 ~gs~iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                      .++.+|++|.+.. +...+. .....+++.      ++  +.++....+...+.
T Consensus       163 ~~~~~Il~t~~~~~l~~~l~-sR~~~~~~~------~~--~~~~~~~~l~~~~~  207 (354)
T 1sxj_E          163 KNIRLIMVCDSMSPIIAPIK-SQCLLIRCP------AP--SDSEISTILSDVVT  207 (354)
T ss_dssp             TTEEEEEEESCSCSSCHHHH-TTSEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHH-hhceEEecC------Cc--CHHHHHHHHHHHHH
Confidence            4677877776642 222221 112333888      99  99999999998773

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.20  E-value=2e-05  Score=76.78  Aligned_cols=46  Identities=17%  Similarity=0.177  Sum_probs=37.6

Q ss_pred             CccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEG----------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..++.|.+++...          .....-+.|+|++|+|||+||+.+++
T Consensus       115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            78999999999998887320          12245788999999999999999987

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.17  E-value=3.6e-06  Score=83.71  Aligned_cols=145  Identities=14%  Similarity=0.108  Sum_probs=83.1

Q ss_pred             CccccccccH---HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC-CCHHHHHHHHH
Q 015752          186 LDISHFERGR---EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD-YDFRRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~  261 (401)
                      .+++|.+..+   ..+...+..+  ....+.|+|++|+||||||+.+.+  .....|     +.++.. ..... +..++
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~-ir~~~   95 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKE-IREAI   95 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHH-HHHHH
T ss_pred             HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHH-HHHHH
Confidence            7889988777   6677777653  346788999999999999999998  333222     222211 11111 11111


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHH-HcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh--HHhhc
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRD-YLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD--LLASL  337 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~--v~~~~  337 (401)
                                           ..... ...+++.+|+||++.. .....+.|...+.. +.-.-|..||.+..  +....
T Consensus        96 ---------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL  153 (447)
T 3pvs_A           96 ---------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSAL  153 (447)
T ss_dssp             ---------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHH
T ss_pred             ---------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHH
Confidence                                 11111 1246789999999977 44444555555443 22222334666653  11111


Q ss_pred             hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          338 EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       338 ~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                        ...-.+ .+.      ++  +.++...++...+.
T Consensus       154 --~sR~~v~~l~------~l--~~edi~~il~~~l~  179 (447)
T 3pvs_A          154 --LSRARVYLLK------SL--STEDIEQVLTQAME  179 (447)
T ss_dssp             --HTTEEEEECC------CC--CHHHHHHHHHHHHH
T ss_pred             --hCceeEEeeC------Cc--CHHHHHHHHHHHHH
Confidence              022234 888      99  99999999988864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.13  E-value=1.8e-06  Score=74.59  Aligned_cols=101  Identities=16%  Similarity=0.066  Sum_probs=54.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      -..+.|+|++|+|||||++.+++.......+ .++++      +..++...+........         .......+   
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~---------~~~~~~~~---   98 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGK---------DTKFLKTV---   98 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTC---------CSHHHHHH---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCch---------HHHHHHHh---
Confidence            4678999999999999999998732212222 22333      33444444444332221         11111221   


Q ss_pred             cCCceEEEEEeCCCC-CchhHH--HHHhhCCCC-CCCcEEEEecCC
Q 015752          289 LTNKKYFIVLDDVFD-DSEIWI--DVEELLPDD-ENGSRVFITVTD  330 (401)
Q Consensus       289 L~~kr~LlVlDdv~~-~~~~~~--~l~~~l~~~-~~gs~iivTTR~  330 (401)
                        .+.-+||||+++. ..+.|.  .+...+... ..|..+|+||..
T Consensus        99 --~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~  142 (180)
T 3ec2_A           99 --LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY  142 (180)
T ss_dssp             --HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             --cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence              1456899999973 123332  233322211 246778888874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.11  E-value=1.9e-06  Score=75.85  Aligned_cols=96  Identities=16%  Similarity=0.079  Sum_probs=54.7

Q ss_pred             Cccccccc----cHHHHHHHHhcCCC--CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHH
Q 015752          186 LDISHFER----GREELFDLLIEGSS--GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDD  259 (401)
Q Consensus       186 ~~~vGr~~----~~~~l~~~L~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~  259 (401)
                      .+|++.+.    .++.+.+++.....  ....+.|+|++|+|||+||+.+++  ........++|++.      ..+...
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~   96 (202)
T 2w58_A           25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFRE   96 (202)
T ss_dssp             TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHH
T ss_pred             hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHH
Confidence            56666443    34455555544322  126788999999999999999998  34333345566654      344444


Q ss_pred             HHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752          260 IIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~  303 (401)
                      +.......         ........+.+     .-+|||||++.
T Consensus        97 ~~~~~~~~---------~~~~~~~~~~~-----~~~lilDei~~  126 (202)
T 2w58_A           97 LKHSLQDQ---------TMNEKLDYIKK-----VPVLMLDDLGA  126 (202)
T ss_dssp             HHHC---C---------CCHHHHHHHHH-----SSEEEEEEECC
T ss_pred             HHHHhccc---------hHHHHHHHhcC-----CCEEEEcCCCC
Confidence            44433211         22223333322     23999999965

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.09  E-value=2.3e-06  Score=71.25  Aligned_cols=45  Identities=13%  Similarity=-0.044  Sum_probs=32.7

Q ss_pred             ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +++|.+..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence            578999988888888753111223467999999999999999987

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.07  E-value=5.3e-05  Score=69.84  Aligned_cols=153  Identities=17%  Similarity=0.128  Sum_probs=80.9

Q ss_pred             CccccccccHHHHHHH-------Hhc-CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHH
Q 015752          186 LDISHFERGREELFDL-------LIE-GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRIL  257 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~-------L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~  257 (401)
                      ..++|.....+++...       +.. .......+.|+|++|+|||+||+.+++.  ..  +.. +.++.+.        
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~--------   99 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPD--------   99 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGG--------
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHH--------
Confidence            5678887776666653       321 2345678889999999999999999883  22  121 2222221        


Q ss_pred             HHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-----------CchhHHHHHhhCCC---CCCCcE
Q 015752          258 DDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-----------DSEIWIDVEELLPD---DENGSR  323 (401)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-----------~~~~~~~l~~~l~~---~~~gs~  323 (401)
                           .+.+..     .......+...+......+..+|+||++..           .......|...+..   ......
T Consensus       100 -----~~~g~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~  169 (272)
T 1d2n_A          100 -----KMIGFS-----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL  169 (272)
T ss_dssp             -----GCTTCC-----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred             -----HhcCCc-----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence                 011100     000112233333334456789999999742           01122334443332   223345


Q ss_pred             EEEecCChhHHhhch-hCCCcce-ecccccCCCCCCCCh-HHHHHHHHH
Q 015752          324 VFITVTDPDLLASLE-MENGEKI-RLDSVLFGGPLIRLK-HEAWQFFIL  369 (401)
Q Consensus       324 iivTTR~~~v~~~~~-~~~~~~~-~l~~~~~~~~L~~~~-~ea~~Lf~~  369 (401)
                      ||.||.......... .+..... .++      ++  +. ++-..++..
T Consensus       170 ii~ttn~~~~l~~~~l~~rf~~~i~~p------~l--~~r~~i~~i~~~  210 (272)
T 1d2n_A          170 IIGTTSRKDVLQEMEMLNAFSTTIHVP------NI--ATGEQLLEALEL  210 (272)
T ss_dssp             EEEEESCHHHHHHTTCTTTSSEEEECC------CE--EEHHHHHHHHHH
T ss_pred             EEEecCChhhcchhhhhcccceEEcCC------Cc--cHHHHHHHHHHh
Confidence            677887776544310 0121233 777      78  77 665555554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.07  E-value=8.8e-05  Score=69.16  Aligned_cols=46  Identities=17%  Similarity=0.201  Sum_probs=37.5

Q ss_pred             CccccccccHHHHHHHHhcC----------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEG----------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..++.+.+.+...          ......+.|+|++|+|||+||+.+++
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            78999999999998877321          12345788999999999999999987

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.05  E-value=7.8e-05  Score=71.08  Aligned_cols=142  Identities=14%  Similarity=0.081  Sum_probs=84.2

Q ss_pred             ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc--------------------ccCeEEEEEcC---C
Q 015752          193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF--------------------YFDCHAWVRVS---L  249 (401)
Q Consensus       193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs---~  249 (401)
                      +..+.+...+..+ .-...+.++|++|+|||++|+.+.+...-..                    +++ ..++...   .
T Consensus         9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~   86 (334)
T 1a5t_A            9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN   86 (334)
T ss_dssp             HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred             HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence            4455666666543 2345788999999999999998876321111                    111 1222211   1


Q ss_pred             CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 015752          250 DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSR  323 (401)
Q Consensus       250 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~  323 (401)
                      ..                         ..+++.. +.+.+     .+++-++|+|++.. +.+..+.|...+-....++.
T Consensus        87 ~~-------------------------~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~  140 (334)
T 1a5t_A           87 TL-------------------------GVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETW  140 (334)
T ss_dssp             SB-------------------------CHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEE
T ss_pred             CC-------------------------CHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeE
Confidence            11                         2222222 22222     25678999999977 56667778777766566777


Q ss_pred             EEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          324 VFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       324 iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      +|++|.+.+ +...+.. ....+.+.      ++  +.++..+.+.+..
T Consensus       141 ~Il~t~~~~~l~~ti~S-Rc~~~~~~------~~--~~~~~~~~L~~~~  180 (334)
T 1a5t_A          141 FFLATREPERLLATLRS-RCRLHYLA------PP--PEQYAVTWLSREV  180 (334)
T ss_dssp             EEEEESCGGGSCHHHHT-TSEEEECC------CC--CHHHHHHHHHHHC
T ss_pred             EEEEeCChHhCcHHHhh-cceeeeCC------CC--CHHHHHHHHHHhc
Confidence            777776653 3222211 11233888      99  9999999888775

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.04  E-value=4e-05  Score=73.20  Aligned_cols=152  Identities=13%  Similarity=0.090  Sum_probs=86.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHHHHHc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSV  264 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l  264 (401)
                      .+++|.+..++.|..++..+.  ...+.++|++|+||||+|+.+++...- ..+. ...-++.+.......+ ++++.. 
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~i-r~~i~~-   99 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVV-RNQIKD-   99 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHH-HTHHHH-
T ss_pred             HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHH-HHHHHH-
Confidence            678898888888888887542  333789999999999999999873110 1111 1222223222222111 111111 


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHH---cCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchh
Q 015752          265 IPPSRVSVIIGEDYQLKKSILRDY---LTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEM  339 (401)
Q Consensus       265 ~~~~~~~~~~~~~~~~l~~~l~~~---L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~  339 (401)
                                          +.+.   +.+.+-++|+|++.. .....+.|...+......+++|++|.... +..... 
T Consensus       100 --------------------~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~-  158 (340)
T 1sxj_C          100 --------------------FASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL-  158 (340)
T ss_dssp             --------------------HHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred             --------------------HHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH-
Confidence                                1110   123467899999865 45555666655544445667777765442 211110 


Q ss_pred             CCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      .....+.+.      ++  +.++..+.+...+
T Consensus       159 sR~~~~~~~------~l--~~~~~~~~l~~~~  182 (340)
T 1sxj_C          159 SQCTRFRFQ------PL--PQEAIERRIANVL  182 (340)
T ss_dssp             TTSEEEECC------CC--CHHHHHHHHHHHH
T ss_pred             hhceeEecc------CC--CHHHHHHHHHHHH
Confidence            011223788      89  9999888888776

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.03  E-value=4.8e-05  Score=71.39  Aligned_cols=156  Identities=12%  Similarity=0.129  Sum_probs=88.2

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .+++|.+..+++|.+++..           +-.....+.|+|++|+|||+||+.+++  .....|     +.+    +..
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~~-----i~v----~~~   83 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISI----KGP   83 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCEE-----EEE----CHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCCE-----EEE----EhH
Confidence            7899999988888877642           123345788999999999999999998  332222     222    222


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C--------------chhHHHHHhhCCC--
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D--------------SEIWIDVEELLPD--  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------------~~~~~~l~~~l~~--  317 (401)
                      .+.....    +.         ....+...+.......+.+|+||++.. .              ......+...+..  
T Consensus        84 ~l~~~~~----g~---------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~  150 (301)
T 3cf0_A           84 ELLTMWF----GE---------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS  150 (301)
T ss_dssp             HHHHHHH----TT---------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred             HHHhhhc----Cc---------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence            3332221    11         111222223333345679999999863 0              0112334433321  


Q ss_pred             CCCCcEEEEecCChhHH-hhc-hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          318 DENGSRVFITVTDPDLL-ASL-EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       318 ~~~gs~iivTTR~~~v~-~~~-~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      ...+..||.||...... ... +.+..... .++      +.  +.++-.++|...+..
T Consensus       151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~------~p--~~~~r~~il~~~l~~  201 (301)
T 3cf0_A          151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP------LP--DEKSRVAILKANLRK  201 (301)
T ss_dssp             TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEecCCccccChHHhcCCccceEEecC------Cc--CHHHHHHHHHHHHcc
Confidence            22355677777665422 111 00122333 777      77  888888888887743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.00  E-value=2.2e-05  Score=74.45  Aligned_cols=153  Identities=12%  Similarity=0.076  Sum_probs=79.3

Q ss_pred             Cccc-cccc--cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDIS-HFER--GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .+|+ |...  ....+...+.........+.|+|++|+||||||+.+++.  ....-...++++.      ..+...+..
T Consensus        11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~   82 (324)
T 1l8q_A           11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVE   82 (324)
T ss_dssp             SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHH
T ss_pred             ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHH
Confidence            5665 5332  234444444433323457889999999999999999873  3211123345543      233334433


Q ss_pred             HcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc--hhHHHHHhhCCC-CCCCcEEEEecCCh-------
Q 015752          263 SVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS--EIWIDVEELLPD-DENGSRVFITVTDP-------  331 (401)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~--~~~~~l~~~l~~-~~~gs~iivTTR~~-------  331 (401)
                      .+...         .....    .+.+ .+..+|+||++.. ..  .....+...+.. ...+..||+||...       
T Consensus        83 ~~~~~---------~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l  148 (324)
T 1l8q_A           83 HLKKG---------TINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV  148 (324)
T ss_dssp             HHHHT---------CHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred             HHHcC---------cHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence            33211         11111    1222 2367999999966 22  222334333321 12356788877543       


Q ss_pred             --hHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhC
Q 015752          332 --DLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYG  372 (401)
Q Consensus       332 --~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~  372 (401)
                        .+...+   ....+ .++        + +.++...++...+.
T Consensus       149 ~~~L~sR~---~~~~~i~l~--------~-~~~e~~~il~~~~~  180 (324)
T 1l8q_A          149 SDRLVSRF---EGGILVEIE--------L-DNKTRFKIIKEKLK  180 (324)
T ss_dssp             CHHHHHHH---HTSEEEECC--------C-CHHHHHHHHHHHHH
T ss_pred             hhHhhhcc---cCceEEEeC--------C-CHHHHHHHHHHHHH
Confidence              122222   11223 666        4 77888888887763

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.99  E-value=1e-05  Score=74.38  Aligned_cols=46  Identities=13%  Similarity=-0.010  Sum_probs=33.2

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.+..+.++.+.+..-......+.|+|.+|+|||+||+.+++
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~   51 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY   51 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            5689999999888877754112224567999999999999999987

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.96  E-value=3.6e-05  Score=72.52  Aligned_cols=147  Identities=7%  Similarity=-0.053  Sum_probs=91.3

Q ss_pred             ccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc-CcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCC
Q 015752          191 FERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN-HVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPS  268 (401)
Q Consensus       191 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~  268 (401)
                      -++.++.|...+..+.  .....++|++|+||||+|+.+.+.. ..........++..+. ...+.. .+++++.+....
T Consensus         2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p   78 (305)
T 2gno_A            2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP   78 (305)
T ss_dssp             --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred             hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence            3455666777666543  6788899999999999999997631 1111122334554432 222222 233444433221


Q ss_pred             CCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCCCccee
Q 015752          269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMENGEKIR  346 (401)
Q Consensus       269 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~~~  346 (401)
                                          ..+++-++|+|++.. .....+.|...+-.....+.+|++|.++ .+...+  ... .++
T Consensus        79 --------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI--~SR-~~~  135 (305)
T 2gno_A           79 --------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI--KSR-VFR  135 (305)
T ss_dssp             --------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH--HTT-SEE
T ss_pred             --------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHH--Hce-eEe
Confidence                                125677899999977 6667777777776656677777776554 343333  133 348


Q ss_pred             cccccCCCCCCCChHHHHHHHHHhh
Q 015752          347 LDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       347 l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      +.      ++  ++++..+.+.+.+
T Consensus       136 f~------~l--~~~~i~~~L~~~~  152 (305)
T 2gno_A          136 VV------VN--VPKEFRDLVKEKI  152 (305)
T ss_dssp             EE------CC--CCHHHHHHHHHHH
T ss_pred             CC------CC--CHHHHHHHHHHHh
Confidence            99      99  9999999998876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.93  E-value=4.8e-05  Score=76.38  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=90.0

Q ss_pred             CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .+++|.+..+++|.+++...           .....-+.|+|++|+|||+||+.+++  .....|   +.++.      .
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~------~  272 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------P  272 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEH------H
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEc------h
Confidence            67899999999988877531           23345688999999999999999987  332222   33331      1


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-------c----hhHHHHHhhCCC--CCC
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-------S----EIWIDVEELLPD--DEN  320 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-------~----~~~~~l~~~l~~--~~~  320 (401)
                          .+...+.         ......+...+.....+++.+|+||++.. .       .    .....|...+..  ...
T Consensus       273 ----~l~~~~~---------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~  339 (489)
T 3hu3_A          273 ----EIMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA  339 (489)
T ss_dssp             ----HHHTSCT---------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred             ----Hhhhhhc---------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence                1111111         10233334444444456788999999832 0       0    122333333321  223


Q ss_pred             CcEEEEecCChhH-Hhhchh-CCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752          321 GSRVFITVTDPDL-LASLEM-ENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (401)
Q Consensus       321 gs~iivTTR~~~v-~~~~~~-~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~  374 (401)
                      +..||.||..... ...+.. +..... .+.      +.  +.++-.++|..++...
T Consensus       340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~------~P--~~~eR~~IL~~~~~~~  388 (489)
T 3hu3_A          340 HVIVMAATNRPNSIDPALRRFGRFDREVDIG------IP--DATGRLEILQIHTKNM  388 (489)
T ss_dssp             CEEEEEEESCGGGBCGGGGSTTSSCEEEECC------CC--CHHHHHHHHHHHTTTS
T ss_pred             ceEEEEecCCccccCHHHhCCCcCceEEEeC------CC--CHHHHHHHHHHHHhcC
Confidence            4566666665532 222210 122333 777      77  9999999999887543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.88  E-value=1.6e-05  Score=74.53  Aligned_cols=134  Identities=10%  Similarity=0.092  Sum_probs=72.7

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|.+..++.+...+...       ......+.++|++|+|||++|+.+++  .....-...+.+..+.-.... ...
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~   93 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVS   93 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHH
Confidence            46789999888888877642       12235789999999999999999987  332211224455544322211 111


Q ss_pred             HHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEE
Q 015752          259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVFI  326 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~iiv  326 (401)
                      .+   ++...... ... ....+...+..   ...-+|+||++.. +......|...+....           .++.+|.
T Consensus        94 ~l---~g~~~~~~-~~~-~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~  165 (311)
T 4fcw_A           94 RL---IGAPPGYV-GYE-EGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM  165 (311)
T ss_dssp             HH---HCCCTTST-TTT-TCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred             Hh---cCCCCccc-ccc-ccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence            22   22111100 000 11122222222   3446999999976 5556666665543221           2344777


Q ss_pred             ecCC
Q 015752          327 TVTD  330 (401)
Q Consensus       327 TTR~  330 (401)
                      ||..
T Consensus       166 ttn~  169 (311)
T 4fcw_A          166 TSNL  169 (311)
T ss_dssp             EEST
T ss_pred             eccc
Confidence            7765

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.00013  Score=70.89  Aligned_cols=156  Identities=12%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.++.+++|.+.+.-           +-...+-+.++|++|.|||.||+.+++  .....|   +.++.+.-.+  
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s--  220 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ--  220 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence            7788999888888766542           123346678999999999999999998  333333   3333322111  


Q ss_pred             HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C--------ch------hHHHHHhhCCC-
Q 015752          255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D--------SE------IWIDVEELLPD-  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------~~------~~~~l~~~l~~-  317 (401)
                                  .      +-. +...+...+...-...+++|.||++.. -        ..      ....+...+.. 
T Consensus       221 ------------k------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  282 (405)
T 4b4t_J          221 ------------K------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF  282 (405)
T ss_dssp             ------------S------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             ------------c------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence                        0      111 222222222222245789999999965 1        00      12233333321 


Q ss_pred             -CCCCcEEEEecCChhHHhh--chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752          318 -DENGSRVFITVTDPDLLAS--LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (401)
Q Consensus       318 -~~~gs~iivTTR~~~v~~~--~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~  374 (401)
                       ...+-.||.||..++....  .+-+..+.. .++      ..  +.++-.++|..+....
T Consensus       283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~------lP--d~~~R~~Il~~~~~~~  335 (405)
T 4b4t_J          283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP------PP--SVAARAEILRIHSRKM  335 (405)
T ss_dssp             TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECC------CC--CHHHHHHHHHHHHTTS
T ss_pred             CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcC------Cc--CHHHHHHHHHHHhcCC
Confidence             2234456667766543211  111233334 777      66  8888889998877543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.81  E-value=0.00024  Score=64.76  Aligned_cols=46  Identities=22%  Similarity=0.237  Sum_probs=34.1

Q ss_pred             CccccccccHHHHHHHHh---cC-------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLI---EG-------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..++++.+.+.   ..       .....-+.|+|++|+||||||+.+++
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            789999888777665432   11       11234578999999999999999987

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.80  E-value=5.9e-05  Score=75.39  Aligned_cols=44  Identities=14%  Similarity=0.146  Sum_probs=37.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|++.+++.+...|....  ..-+.|+|++|+|||+||+.+++
T Consensus       180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            679999999999999997632  23457899999999999999987

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.00026  Score=69.65  Aligned_cols=155  Identities=13%  Similarity=0.136  Sum_probs=85.6

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.++.+++|.+.+.-           +-...+-|.++|++|.|||.||+.+++  .....|   +.++.+.-.+  
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s--  253 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD--  253 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--
Confidence            7788998888888776642           123456788999999999999999998  333332   3333332111  


Q ss_pred             HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C----------ch----hHHHHHhhCCC-
Q 015752          255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D----------SE----IWIDVEELLPD-  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~----------~~----~~~~l~~~l~~-  317 (401)
                                  .      +.. ....+.......-...+++|.+|++.. -          ..    ....+...+.. 
T Consensus       254 ------------k------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  315 (437)
T 4b4t_L          254 ------------K------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF  315 (437)
T ss_dssp             ------------S------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred             ------------c------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence                        0      111 222222222222245789999999964 0          00    12233333321 


Q ss_pred             -CCCCcEEEEecCChhHHhhc--hhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          318 -DENGSRVFITVTDPDLLASL--EMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       318 -~~~gs~iivTTR~~~v~~~~--~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                       ...+..||.||..++.....  +-+..+.. .++      ..  +.++-.++|..+...
T Consensus       316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~------lP--d~~~R~~Il~~~~~~  367 (437)
T 4b4t_L          316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP------LP--NEAGRLEIFKIHTAK  367 (437)
T ss_dssp             SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC------CC--CHHHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEecCCchhhCHHHhCCCccceeeecC------Cc--CHHHHHHHHHHHhcC
Confidence             22345677777765433211  00112222 555      55  777888888777643

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.78  E-value=2.9e-05  Score=73.13  Aligned_cols=45  Identities=13%  Similarity=0.059  Sum_probs=36.2

Q ss_pred             ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|....+.++.+.+..-......|.|+|.+|+|||++|+.+++
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence            578999999998888765222334567999999999999999987

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.00034  Score=68.96  Aligned_cols=158  Identities=16%  Similarity=0.132  Sum_probs=87.6

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.++.+++|.+.+.-           +-...+-|.++|++|.|||.||+.+++  +....|   +.++.+.-.   
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~---  280 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELV---  280 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGC---
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhh---
Confidence            6788999888888776431           223466788999999999999999998  333333   333332211   


Q ss_pred             HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C--------c--h----hHHHHHhhCCC-
Q 015752          255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D--------S--E----IWIDVEELLPD-  317 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~--------~--~----~~~~l~~~l~~-  317 (401)
                                 ..      +-. ....+...+...-...+++|++|++.. -        .  .    ....+...+.. 
T Consensus       281 -----------sk------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  343 (467)
T 4b4t_H          281 -----------QK------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF  343 (467)
T ss_dssp             -----------CC------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred             -----------cc------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence                       11      111 222222222333345789999999964 0        0  0    11222222221 


Q ss_pred             -CCCCcEEEEecCChhHHh--hchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCC
Q 015752          318 -DENGSRVFITVTDPDLLA--SLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPL  376 (401)
Q Consensus       318 -~~~gs~iivTTR~~~v~~--~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~  376 (401)
                       ...+-.||.||...+...  ..+-+..+.. .++      ..  +.++-.++|..++...+.
T Consensus       344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~------lP--d~~~R~~Ilk~~l~~~~l  398 (467)
T 4b4t_H          344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS------LP--DLEGRANIFRIHSKSMSV  398 (467)
T ss_dssp             CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCC------CC--CHHHHHHHHHHHHTTSCB
T ss_pred             CCCCcEEEEeCCCCcccCChhhhccccccEEEEeC------Cc--CHHHHHHHHHHHhcCCCC
Confidence             123445566776554211  1111223344 666      66  888888999888765433

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.71  E-value=0.00042  Score=69.10  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=85.3

Q ss_pred             CccccccccHHHHHHHHhc--C--------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLLIE--G--------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.+..++++.+.+..  .        ..-.+-+.|+|++|+|||+||+.+++  .....|   +.++.+.-..   
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~---   87 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVE---   87 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTT---
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHH---
Confidence            7899998887777665431  1        11223478999999999999999997  332222   2333322111   


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-Cc--------------hhHHHHHhhCC--CC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DS--------------EIWIDVEELLP--DD  318 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~--------------~~~~~l~~~l~--~~  318 (401)
                             .+.         ..........+.....+.+.+|+||++.. ..              .....+...+.  ..
T Consensus        88 -------~~~---------g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~  151 (476)
T 2ce7_A           88 -------LFV---------GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS  151 (476)
T ss_dssp             -------CCT---------THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred             -------HHh---------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence                   000         00222233344444456789999999844 10              12233433222  11


Q ss_pred             CCCcEEEEecCChhHHh-h-chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          319 ENGSRVFITVTDPDLLA-S-LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       319 ~~gs~iivTTR~~~v~~-~-~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      ..+..||.||...+... . .+-+..... .++      +.  +.++-.++|..++..
T Consensus       152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~------~P--d~~~R~~Il~~~~~~  201 (476)
T 2ce7_A          152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVD------PP--DMLGRKKILEIHTRN  201 (476)
T ss_dssp             GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECC------CC--CHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEecCChhhhchhhcccCcceeEeecC------CC--CHHHHHHHHHHHHHh
Confidence            23556777777665432 1 110122323 667      66  777777888777643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.71  E-value=9.3e-05  Score=79.52  Aligned_cols=44  Identities=11%  Similarity=0.149  Sum_probs=37.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++||+.++.++.+.|....  ..-+.++|++|+|||+||+.+++
T Consensus       170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~  213 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ  213 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence            679999999999999997632  23457899999999999999987

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.62  E-value=8.3e-05  Score=69.45  Aligned_cols=46  Identities=13%  Similarity=0.064  Sum_probs=36.5

Q ss_pred             CccccccccHHHHHHHHhc------------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE------------GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.+..++.+...+..            .......+.|+|++|+|||++|+.+.+
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            5689999999988887754            012234677999999999999999987

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.60  E-value=0.00027  Score=62.37  Aligned_cols=89  Identities=11%  Similarity=0.055  Sum_probs=54.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC------ccccCc--CHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV------SVIIGE--DYQL  280 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~--~~~~  280 (401)
                      -.++.|.|.+|+|||||+..+..     ..-..++|+.....++...+. .+....+.....      ......  +...
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRR   93 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence            45899999999999999999986     122467888877655655443 333333221000      001111  2234


Q ss_pred             HHHHHHHHcCCceEEEEEeCCCC
Q 015752          281 KKSILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       281 l~~~l~~~L~~kr~LlVlDdv~~  303 (401)
                      ....++..+..+.-+||||.+-.
T Consensus        94 ~~~~~~~l~~~~~~lliiD~~~~  116 (220)
T 2cvh_A           94 VIGSLKKTVDSNFALVVVDSITA  116 (220)
T ss_dssp             HHHHHHHHCCTTEEEEEEECCCC
T ss_pred             HHHHHHHHhhcCCCEEEEcCcHH
Confidence            55566666655677999999865

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.57  E-value=4.8e-05  Score=69.84  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=35.3

Q ss_pred             CccccccccHHHHHHHHhc----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE----------GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..++.+.+.+..          +.....-+.|+|++|+|||+||+.+++
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence            7899999988888776541          111123367999999999999999988

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.00038  Score=68.45  Aligned_cols=46  Identities=20%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++.|.++.+++|.+.+.-           +-...+-|.++|++|.|||.||+.+++
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            8899999998888776432           123456788999999999999999998

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.56  E-value=0.00027  Score=74.95  Aligned_cols=153  Identities=10%  Similarity=0.070  Sum_probs=84.8

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|.+..++.+...+...       ......+.++|++|+|||++|+.+++  .....-...+.++.+.-..      
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~------  562 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYME------  562 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCS------
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhccc------
Confidence            67899999998888887641       12234788999999999999999987  3222122334454433111      


Q ss_pred             HHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEE
Q 015752          259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD-----------ENGSRVFI  326 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~iiv  326 (401)
                              ..     .. ....+...+++   ....+|+||++.. .++....|...+..+           ..+.+||+
T Consensus       563 --------~~-----~~-~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~  625 (758)
T 3pxi_A          563 --------KH-----ST-SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM  625 (758)
T ss_dssp             --------SC-----CC-C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred             --------cc-----cc-ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence                    00     00 10111111221   2345899999976 555556665544331           23568888


Q ss_pred             ecCC-----hhH----Hhhch---hCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          327 TVTD-----PDL----LASLE---MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       327 TTR~-----~~v----~~~~~---~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ||..     ..+    .....   ......+ .+.      ||  +.++-..++...+
T Consensus       626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~------~l--~~~~~~~i~~~~l  675 (758)
T 3pxi_A          626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH------SL--EKKHLTEIVSLMS  675 (758)
T ss_dssp             EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC----------CHHHHHHHHHHHH
T ss_pred             eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC------CC--CHHHHHHHHHHHH
Confidence            8873     111    11110   0122234 888      99  9988888776654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.52  E-value=0.00062  Score=64.73  Aligned_cols=46  Identities=20%  Similarity=0.095  Sum_probs=36.0

Q ss_pred             CccccccccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.+..++.+...+..+   ......+.|+|++|+||||||+.+++
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            67889887777776666432   23346789999999999999999988

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.51  E-value=0.0012  Score=69.92  Aligned_cols=44  Identities=18%  Similarity=0.101  Sum_probs=37.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++||+.++.++.+.|...  ...-+.|+|.+|+|||++|+.+++
T Consensus       186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~  229 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAW  229 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHH
Confidence            67899999999999998753  234567999999999999999986

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.001  Score=65.04  Aligned_cols=46  Identities=24%  Similarity=0.193  Sum_probs=36.8

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++.|.++.+++|.+.+.-           +-...+-|.++|++|.|||.||+.+++
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence            7888999888888776532           123356788999999999999999998

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.39  E-value=0.00065  Score=71.94  Aligned_cols=44  Identities=14%  Similarity=0.146  Sum_probs=37.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|++.+++++...|....  ..-+.++|++|+|||++|+.+++
T Consensus       180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~  223 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            679999999999999997632  23467999999999999999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.35  E-value=0.0001  Score=61.77  Aligned_cols=25  Identities=8%  Similarity=0.025  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-..++|+|+.|+|||||++.+++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999999873

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.34  E-value=0.0015  Score=68.93  Aligned_cols=156  Identities=13%  Similarity=0.155  Sum_probs=87.2

Q ss_pred             CccccccccHHHHHHHHhc----C-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE----G-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.++.+++|.+.+.-    .       -...+-|.++|++|+|||+||+.+++  ....+|   +.++.+      
T Consensus       204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~------  272 (806)
T 3cf2_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------  272 (806)
T ss_dssp             GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH------
T ss_pred             hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH------
Confidence            7788999998888876531    1       13456788999999999999999998  443333   333321      


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-------ch----hHHHHHhhCCC--CCC
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-------SE----IWIDVEELLPD--DEN  320 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-------~~----~~~~l~~~l~~--~~~  320 (401)
                          ++.....         ......+...+.......+.+|+||++.. -       .+    ....|...+..  ...
T Consensus       273 ----~l~sk~~---------gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~  339 (806)
T 3cf2_A          273 ----EIMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA  339 (806)
T ss_dssp             ----HHHSSCT---------THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred             ----Hhhcccc---------hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence                1111111         10334444444444456789999999854 1       01    11222222211  112


Q ss_pred             CcEEEEecCChh-HHhhch-hCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          321 GSRVFITVTDPD-LLASLE-MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       321 gs~iivTTR~~~-v~~~~~-~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      +-.||.||...+ +-..+. .+..... .+.      ..  +.++-.++|..+...
T Consensus       340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~------~P--d~~~R~~IL~~~l~~  387 (806)
T 3cf2_A          340 HVIVMAATNRPNSIDPALRRFGRFDREVDIG------IP--DATGRLEILQIHTKN  387 (806)
T ss_dssp             CEEEEEECSSTTTSCTTTTSTTSSCEEEECC------CC--CHHHHHHHHHHTCSS
T ss_pred             CEEEEEecCChhhcCHHHhCCcccceEEecC------CC--CHHHHHHHHHHHhcC
Confidence            334555665543 222221 0122333 666      66  888888888877654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.32  E-value=0.0075  Score=54.53  Aligned_cols=46  Identities=22%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             CccccccccHHHHHHHHhc--C--------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE--G--------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..+.++.+....  .        -.-.+-+.|+|++|+|||||++.+++
T Consensus        16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            7889988776665543321  1        00112288999999999999999997

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.31  E-value=0.0036  Score=57.75  Aligned_cols=45  Identities=29%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             CccccccccHHHHHHHHhc---C---------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE---G---------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~---------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++.|.++.+++|.+.+..   .         ..... +.|+|++|+||||||+.++.
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence            6788888888877765421   1         11122 89999999999999999987

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.29  E-value=6e-05  Score=71.07  Aligned_cols=60  Identities=12%  Similarity=0.047  Sum_probs=36.7

Q ss_pred             Ccccccc----ccHHHHHHHHhcCCC-CceEEEEEcCCCCchHHHHHHhhcccCcc-cccCeEEEEEc
Q 015752          186 LDISHFE----RGREELFDLLIEGSS-GLSVVAILDSGGFDKTAFAADTYNNNHVK-FYFDCHAWVRV  247 (401)
Q Consensus       186 ~~~vGr~----~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v  247 (401)
                      .+|++.+    ..++.+.+++..... ....+.|+|++|+|||+||..+++  ... ..-..+.++++
T Consensus       124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~  189 (308)
T 2qgz_A          124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF  189 (308)
T ss_dssp             GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred             hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence            5565433    334455556654221 245788999999999999999988  333 22233455544

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.25  E-value=0.0013  Score=62.28  Aligned_cols=153  Identities=15%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      ..++|.+..++.+...+..+    .-+.++|++|+|||+||+.+.+  .....|   ..+..+......++..    ...
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g----~~~   93 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIG----TMI   93 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHE----EEE
T ss_pred             cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCC----cee
Confidence            46899999999888888763    2477899999999999999987  332222   2233333333333221    110


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHcCC--ceEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEEecCCh
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYLTN--KKYFIVLDDVFD-DSEIWIDVEELLPDD-----------ENGSRVFITVTDP  331 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~iivTTR~~  331 (401)
                      .....    . ..        .+..+  ...++++|++.. +......|...+...           .....||.|+...
T Consensus        94 ~~~~~----~-~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~  160 (331)
T 2r44_A           94 YNQHK----G-NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV  160 (331)
T ss_dssp             EETTT----T-EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred             ecCCC----C-ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence            00000    0 00        00001  135899999976 454445444433211           2234555555522


Q ss_pred             h------HHhhchhCCCc-ceecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          332 D------LLASLEMENGE-KIRLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       332 ~------v~~~~~~~~~~-~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                      .      +..... .... .+.++      ++  +.++-.+++...+..
T Consensus       161 ~~~~~~~l~~~l~-~Rf~~~i~i~------~p--~~~~~~~il~~~~~~  200 (331)
T 2r44_A          161 EQEGTYPLPEAQV-DRFMMKIHLT------YL--DKESELEVMRRVSNM  200 (331)
T ss_dssp             CCSCCCCCCHHHH-TTSSEEEECC------CC--CHHHHHHHHHHHHCT
T ss_pred             cccCcccCCHHHH-hheeEEEEcC------CC--CHHHHHHHHHhcccc
Confidence            1      111110 1223 34788      88  999999999988754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.18  E-value=0.0012  Score=70.73  Aligned_cols=133  Identities=11%  Similarity=0.118  Sum_probs=71.5

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|.+..+..+...+...       ......+.|+|++|+|||++|+.+.+.  ....-...+.++.+.-... ... 
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~-~~~-  633 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HAV-  633 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSS-GGG-
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccch-hHH-
Confidence            45799999888888777531       122357889999999999999999872  2111112344444432211 000 


Q ss_pred             HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEE
Q 015752          259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE-----------NGSRVF  325 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~ii  325 (401)
                         ..+.+....  -... ....+...+..   ...-+|+||++.. ..+....|...+..+.           .++.||
T Consensus       634 ---s~l~g~~~~--~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI  705 (854)
T 1qvr_A          634 ---SRLIGAPPG--YVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVII  705 (854)
T ss_dssp             ---GGC----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEE
T ss_pred             ---HHHcCCCCC--CcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEE
Confidence               111100000  0000 11222222322   2346899999976 5666677777666431           245577


Q ss_pred             EecCC
Q 015752          326 ITVTD  330 (401)
Q Consensus       326 vTTR~  330 (401)
                      +||..
T Consensus       706 ~tsn~  710 (854)
T 1qvr_A          706 LTSNL  710 (854)
T ss_dssp             EECCT
T ss_pred             EecCc
Confidence            77775

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.12  E-value=0.00095  Score=62.25  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .....+.++|++|+|||+||+.+++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456788999999999999999998

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.09  E-value=0.00026  Score=66.64  Aligned_cols=68  Identities=13%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEc--CCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV--SLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRD  287 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  287 (401)
                      +++.|+|++|+|||+||.++...     .-..+.|++.  +...+.             .       ..+.+.....+.+
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~-------~~~le~~l~~i~~  178 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y-------NTDFNVFVDDIAR  178 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C-------BCCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h-------hcCHHHHHHHHHH
Confidence            56789999999999999999873     2223456666  332110             0       0145566666666


Q ss_pred             HcCCceEEEEEeCCCC
Q 015752          288 YLTNKKYFIVLDDVFD  303 (401)
Q Consensus       288 ~L~~kr~LlVlDdv~~  303 (401)
                      .+...+ +||+|++..
T Consensus       179 ~l~~~~-LLVIDsI~a  193 (331)
T 2vhj_A          179 AMLQHR-VIVIDSLKN  193 (331)
T ss_dssp             HHHHCS-EEEEECCTT
T ss_pred             HHhhCC-EEEEecccc
Confidence            665555 999999965

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.0015  Score=64.12  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++.|.++.+++|.+.+.-           +-...+-+.++|++|.|||+||+.+++
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            7889999988888776642           123456688999999999999999998

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.03  E-value=0.0018  Score=68.60  Aligned_cols=46  Identities=11%  Similarity=0.104  Sum_probs=36.1

Q ss_pred             CccccccccHHHHHHHHhcC-------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEG-------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.+..++.+...+...       ......+.++|++|+|||++|+.+.+
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~  510 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK  510 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence            45889888888887776531       12334788999999999999999987

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.02  E-value=0.0016  Score=62.48  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=57.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~  286 (401)
                      .-.++.|.|++|+|||||+..++..  ....-..++|++....++..     .+.+++.......-... +.++....+.
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~  132 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD  132 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence            3469999999999999999999863  22222357888887777654     44555543221101111 5566666666


Q ss_pred             HHcC-CceEEEEEeCCCC
Q 015752          287 DYLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       287 ~~L~-~kr~LlVlDdv~~  303 (401)
                      ..++ .+.-++|+|.+-.
T Consensus       133 ~l~~~~~~dlvVIDSi~~  150 (356)
T 3hr8_A          133 ELVRSGVVDLIVVDSVAA  150 (356)
T ss_dssp             HHHHTSCCSEEEEECTTT
T ss_pred             HHhhhcCCCeEEehHhhh
Confidence            5553 4566999999754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.97  E-value=0.0011  Score=67.26  Aligned_cols=46  Identities=17%  Similarity=0.237  Sum_probs=34.7

Q ss_pred             CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.++....+.+.+.-    ..-....+.++|++|+||||||+.++.
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            5578888777777554431    122456899999999999999999987

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.94  E-value=0.0035  Score=60.39  Aligned_cols=46  Identities=13%  Similarity=0.044  Sum_probs=34.5

Q ss_pred             CccccccccHHHHHHHHhc----------------------------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE----------------------------GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.+..++.|...+..                            .......+.++|++|+|||++|+.+++
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence            4578888888888776620                            011234578999999999999999987

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.93  E-value=0.00092  Score=57.03  Aligned_cols=55  Identities=7%  Similarity=0.027  Sum_probs=36.2

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--Cch----------------hHHHHHhhCCCC-CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSE----------------IWIDVEELLPDD-ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~----------------~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+.+.+..++-+++||.-..  |..                ....+...+..- ..|..+|++|.+.+.+..+
T Consensus        92 v~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A           92 IEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred             HHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence            456666778889999998644  232                345556666542 2367788888887766544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.91  E-value=0.011  Score=54.26  Aligned_cols=46  Identities=22%  Similarity=0.214  Sum_probs=32.9

Q ss_pred             CccccccccHHHHHHHHhc--C--------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE--G--------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..++++.+....  .        -.-.+-+.|+|++|+|||||++.+++
T Consensus        40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence            7899988777666554321  1        00112288999999999999999987

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.84  E-value=0.0027  Score=56.24  Aligned_cols=117  Identities=13%  Similarity=0.003  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc--------c---------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS--------V---------  272 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--------~---------  272 (401)
                      .+++|.|.+|+|||||++.+....  ...-..+.|+....  ....+...+ ..++......        +         
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ   98 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence            588999999999999999998522  11112456665443  344443333 2333221100        0         


Q ss_pred             -ccCc-CHHHHHHHHHHHcC---CceEEEEEeCCCC----CchhHHHHHhhCCC--CCCCcEEEEecCCh
Q 015752          273 -IIGE-DYQLKKSILRDYLT---NKKYFIVLDDVFD----DSEIWIDVEELLPD--DENGSRVFITVTDP  331 (401)
Q Consensus       273 -~~~~-~~~~l~~~l~~~L~---~kr~LlVlDdv~~----~~~~~~~l~~~l~~--~~~gs~iivTTR~~  331 (401)
                       .... +..++...+...+.   -++.+||||..-.    |......+...+..  ...|..||++|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence             0011 44555555555442   2334999999862    24333443333321  12477889888876

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.82  E-value=0.012  Score=58.92  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=33.9

Q ss_pred             CccccccccHHHHHHHHh---cC-------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLI---EG-------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|.+..+.++.+...   ..       -.-.+-+.|+|++|+||||||+.+++
T Consensus        31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            889999887776665542   11       01122388999999999999999997

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.82  E-value=0.0053  Score=57.60  Aligned_cols=86  Identities=6%  Similarity=0.027  Sum_probs=55.6

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccc--cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHH-HHHHH
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFY--FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLK-KSILR  286 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l-~~~l~  286 (401)
                      ++.|.|++|+|||||+.+++..  ....  -..++|++....++..     .+++++.+....--... +.++. ...+.
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~  102 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN  102 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence            7899999999999999888763  2222  2468999988888753     36677665332100111 44454 33333


Q ss_pred             HH--c-CCceEEEEEeCCCC
Q 015752          287 DY--L-TNKKYFIVLDDVFD  303 (401)
Q Consensus       287 ~~--L-~~kr~LlVlDdv~~  303 (401)
                      ..  + .++.-|||+|.+-.
T Consensus       103 ~l~~i~~~~~~lvVIDSI~a  122 (333)
T 3io5_A          103 QLDAIERGEKVVVFIDSLGN  122 (333)
T ss_dssp             HHHTCCTTCCEEEEEECSTT
T ss_pred             HHHHhhccCceEEEEecccc
Confidence            32  3 45788999999855

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.79  E-value=0.0035  Score=60.34  Aligned_cols=88  Identities=11%  Similarity=0.027  Sum_probs=56.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRD  287 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~  287 (401)
                      -.++.|.|.+|+||||||.++...  ....-..++|++....++..     .+..++.......-... +.+++...+..
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~  146 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL  146 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence            458889999999999999988763  22222468999988877654     23444433211000111 56666666766


Q ss_pred             HcC-CceEEEEEeCCCC
Q 015752          288 YLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       288 ~L~-~kr~LlVlDdv~~  303 (401)
                      ..+ ++.-+||+|.+-.
T Consensus       147 l~~~~~~~lVVIDsl~~  163 (366)
T 1xp8_A          147 LVRSGAIDVVVVDSVAA  163 (366)
T ss_dssp             HHTTTCCSEEEEECTTT
T ss_pred             HHhcCCCCEEEEeChHH
Confidence            664 3456999999854

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.76  E-value=0.011  Score=52.62  Aligned_cols=125  Identities=13%  Similarity=0.088  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc------------------CeEEEEEcCC----CCCHH----------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF------------------DCHAWVRVSL----DYDFR----------  254 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F------------------~~~~wv~vs~----~~~~~----------  254 (401)
                      .+++|+|+.|+|||||.+.+..-.... +  .|                  ..+.++.-..    ..++.          
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  110 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM  110 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence            489999999999999999986421100 0  00                  1133332111    11221          


Q ss_pred             --------HHHHHHHHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCC
Q 015752          255 --------RILDDIIKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENG  321 (401)
Q Consensus       255 --------~~~~~i~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~g  321 (401)
                              ....++++.++........... +. +...-.+...|..++-+++||.--.  |...-..+...+..- ..|
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g  190 (224)
T 2pcj_A          111 GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG  190 (224)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence                    1233455555543221112222 22 2333445556667778999999866  554444444433221 126


Q ss_pred             cEEEEecCChhHH
Q 015752          322 SRVFITVTDPDLL  334 (401)
Q Consensus       322 s~iivTTR~~~v~  334 (401)
                      ..||++|.+.+.+
T Consensus       191 ~tvi~vtHd~~~~  203 (224)
T 2pcj_A          191 TSIVMVTHERELA  203 (224)
T ss_dssp             CEEEEECSCHHHH
T ss_pred             CEEEEEcCCHHHH
Confidence            6799999988776

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.74  E-value=0.0026  Score=63.13  Aligned_cols=47  Identities=21%  Similarity=0.104  Sum_probs=35.9

Q ss_pred             CccccccccHHHHHH---HHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          186 LDISHFERGREELFD---LLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|.+..++.+..   ++..+....+-+.++|++|+|||+||+.+++.
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~   86 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE   86 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence            789999988776544   44443333456889999999999999999983

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.73  E-value=0.0058  Score=55.97  Aligned_cols=124  Identities=13%  Similarity=0.095  Sum_probs=65.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--ccC-----------eEEEEEcCCCC----CHH--------------HHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YFD-----------CHAWVRVSLDY----DFR--------------RIL  257 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~-----------~~~wv~vs~~~----~~~--------------~~~  257 (401)
                      .+++|+|+.|+|||||.+.++.-. .. .  .|+           .+.| .+.+.+    ++.              ...
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~  108 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDLF  108 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence            478999999999999999997521 10 0  011           1221 122211    221              123


Q ss_pred             HHHHHHcCCC-CCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChh
Q 015752          258 DDIIKSVIPP-SRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPD  332 (401)
Q Consensus       258 ~~i~~~l~~~-~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~  332 (401)
                      .++++.++.. ......... + -+...-.+...|..++-+++||.--.  |...-..+...+..-..  .||++|.+.+
T Consensus       109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~  186 (263)
T 2pjz_A          109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD  186 (263)
T ss_dssp             HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred             HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence            4555666544 211112222 2 22233344455556777999999866  55444444444433222  6888888866


Q ss_pred             HHhhc
Q 015752          333 LLASL  337 (401)
Q Consensus       333 v~~~~  337 (401)
                      .+...
T Consensus       187 ~~~~~  191 (263)
T 2pjz_A          187 MLNLY  191 (263)
T ss_dssp             GGGGC
T ss_pred             HHHHh
Confidence            55443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.71  E-value=0.0038  Score=59.68  Aligned_cols=89  Identities=16%  Similarity=0.059  Sum_probs=55.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~  286 (401)
                      .-.++.|.|.+|+||||||.++...  ....=..++|++....++..     .+..++.......-... +.++....+.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~  132 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD  132 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence            3468999999999999999998763  22222468899988777643     24445433211100111 4555655555


Q ss_pred             HHcC-CceEEEEEeCCCC
Q 015752          287 DYLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       287 ~~L~-~kr~LlVlDdv~~  303 (401)
                      .... .+.-+||+|.+-.
T Consensus       133 ~l~~~~~~~lIVIDsl~~  150 (349)
T 2zr9_A          133 MLVRSGALDIIVIDSVAA  150 (349)
T ss_dssp             HHHTTTCCSEEEEECGGG
T ss_pred             HHHhcCCCCEEEEcChHh
Confidence            5554 4567999999844

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.68  E-value=0.00079  Score=60.23  Aligned_cols=111  Identities=16%  Similarity=0.005  Sum_probs=61.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDY  288 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~  288 (401)
                      -.++.|.|..|+||||++..+.+  +...+-..++.++-....  . ....++.+++...... ... ...++...+.+.
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~-~~~-~~~~i~~~i~~~   84 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSV-EVE-SAPEILNYIMSN   84 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCE-EES-STHHHHHHHHST
T ss_pred             cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCcccc-ccC-CHHHHHHHHHHH
Confidence            46888999999999999988776  333332233334322211  1 1123344443321110 111 445566666665


Q ss_pred             cCCce-EEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC
Q 015752          289 LTNKK-YFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVT  329 (401)
Q Consensus       289 L~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR  329 (401)
                      +.+.+ -+||+|.+.. +.+..+.+... .+  .|..||+|-+
T Consensus        85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L-~~--~gi~Vil~Gl  124 (223)
T 2b8t_A           85 SFNDETKVIGIDEVQFFDDRICEVANIL-AE--NGFVVIISGL  124 (223)
T ss_dssp             TSCTTCCEEEECSGGGSCTHHHHHHHHH-HH--TTCEEEEECC
T ss_pred             hhCCCCCEEEEecCccCcHHHHHHHHHH-Hh--CCCeEEEEec
Confidence            55444 4999999865 34444444432 22  2678999988

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.67  E-value=0.0095  Score=54.32  Aligned_cols=128  Identities=9%  Similarity=0.078  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc-------------CeEEEEEcCC----CCCHHH--------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF-------------DCHAWVRVSL----DYDFRR--------------  255 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F-------------~~~~wv~vs~----~~~~~~--------------  255 (401)
                      .+++|+|+.|+|||||.+.++.-.... +  .|             ..+.++.-..    ..++.+              
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~  121 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS  121 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence            589999999999999999997521110 0  00             1123332111    112211              


Q ss_pred             ----HHHHHHHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEE
Q 015752          256 ----ILDDIIKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFI  326 (401)
Q Consensus       256 ----~~~~i~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iiv  326 (401)
                          ...++++.++........... +. +...-.+...|..++-+++||.--.  |+..-..+...+..- ..|..||+
T Consensus       122 ~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiii  201 (256)
T 1vpl_A          122 EIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV  201 (256)
T ss_dssp             HHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence                123444554443211111222 22 2233344455667778999999866  554444444333221 23677999


Q ss_pred             ecCChhHHhhc
Q 015752          327 TVTDPDLLASL  337 (401)
Q Consensus       327 TTR~~~v~~~~  337 (401)
                      +|.+.+.+...
T Consensus       202 vtHd~~~~~~~  212 (256)
T 1vpl_A          202 SSHNMLEVEFL  212 (256)
T ss_dssp             EECCHHHHTTT
T ss_pred             EcCCHHHHHHH
Confidence            99987776553

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.66  E-value=0.0053  Score=54.42  Aligned_cols=124  Identities=16%  Similarity=0.110  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc---------CeEEEEEcCC----CCCHH----------------HHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF---------DCHAWVRVSL----DYDFR----------------RIL  257 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F---------~~~~wv~vs~----~~~~~----------------~~~  257 (401)
                      .+++|+|+.|+|||||.+.++.-.... .  .|         ..+.++.-..    ..++.                .-.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  115 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI  115 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence            478999999999999999997521110 0  01         1133332111    11211                223


Q ss_pred             HHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChh
Q 015752          258 DDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPD  332 (401)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~  332 (401)
                      .++++.++.... ...... + -+...-.+...|..++-+++||.--.  |+..-..+...+..- ..|..||++|.+..
T Consensus       116 ~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~  194 (214)
T 1sgw_A          116 MDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL  194 (214)
T ss_dssp             HHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred             HHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            445555554432 112222 2 23333445556667788999999866  544444444333221 12556888887755


Q ss_pred             HH
Q 015752          333 LL  334 (401)
Q Consensus       333 v~  334 (401)
                      .+
T Consensus       195 ~~  196 (214)
T 1sgw_A          195 SY  196 (214)
T ss_dssp             TT
T ss_pred             HH
Confidence            43

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.65  E-value=0.016  Score=49.66  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .++|+|+.|+|||||++.++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999988763

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.65  E-value=0.0048  Score=58.33  Aligned_cols=94  Identities=13%  Similarity=0.074  Sum_probs=58.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC----c--cccCc--
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV----S--VIIGE--  276 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~--~~~~~--  276 (401)
                      -.++.|.|.+|+||||||.+++........    -..++|++....++...+. .++..++.....    .  ....+  
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~  185 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD  185 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence            458999999999999999998864222211    2478999988887766654 345555443210    0  00111  


Q ss_pred             CHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 015752          277 DYQLKKSILRDYLT--NKKYFIVLDDVFD  303 (401)
Q Consensus       277 ~~~~l~~~l~~~L~--~kr~LlVlDdv~~  303 (401)
                      ...++...+...+.  .+.-+||+|.+-.
T Consensus       186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  214 (324)
T 2z43_A          186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS  214 (324)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence            12234555555553  4677999999854

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.63  E-value=0.0067  Score=54.13  Aligned_cols=94  Identities=5%  Similarity=-0.029  Sum_probs=55.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCC---Cc-cccCc-CHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSR---VS-VIIGE-DYQ  279 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~-~~~~~-~~~  279 (401)
                      -.++.|+|++|+|||||+..+........    .-..++|+.....+....+ ..++..++....   +. .-... +..
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~  102 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD  102 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence            35899999999999999999886322211    1257888887776555443 234444443210   00 00011 222


Q ss_pred             ---HHHHHHHHHcC-CceEEEEEeCCCC
Q 015752          280 ---LKKSILRDYLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       280 ---~l~~~l~~~L~-~kr~LlVlDdv~~  303 (401)
                         .....+.+.+. .+.-+||||.+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~  130 (243)
T 1n0w_A          103 HQTQLLYQASAMMVESRYALLIVDSATA  130 (243)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence               23334555553 4678999999865

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.61  E-value=0.027  Score=50.32  Aligned_cols=54  Identities=13%  Similarity=0.063  Sum_probs=35.4

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhh-CCCCCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEEL-LPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~-l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+.+.|-.++-+++||.--.  |...-..+... +.....|..||++|.+.+.+..+
T Consensus       140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~  196 (229)
T 2pze_A          140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA  196 (229)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHC
T ss_pred             HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhC
Confidence            34444556677899999876  66666677664 33333466788899987765433

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.61  E-value=0.011  Score=53.13  Aligned_cols=52  Identities=12%  Similarity=0.093  Sum_probs=33.4

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCC---CCCCCcEEEEecCChhHHh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLP---DDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~---~~~~gs~iivTTR~~~v~~  335 (401)
                      .+.+.|..++-+++||.--.  |+..-..+...+.   ....|..||++|.+.+.+.
T Consensus       137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~  193 (237)
T 2cbz_A          137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP  193 (237)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred             HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence            33444455667889999866  6665566666662   2224667888888766544

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.59  E-value=0.011  Score=56.44  Aligned_cols=96  Identities=6%  Similarity=-0.003  Sum_probs=58.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC---c---cccC-
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV---S---VIIG-  275 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~---~~~~-  275 (401)
                      ..-.++.|.|.+|+||||||..++.......    .-..++|++....++...+. .++..++.....   .   .... 
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~  198 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT  198 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence            3456899999999999999999886422211    22478899988887766654 344555432110   0   0011 


Q ss_pred             c-CHHHHHHHHHHHcC---CceEEEEEeCCCC
Q 015752          276 E-DYQLKKSILRDYLT---NKKYFIVLDDVFD  303 (401)
Q Consensus       276 ~-~~~~l~~~l~~~L~---~kr~LlVlDdv~~  303 (401)
                      . ....+...+.+.+.   .+.-+||+|.+-.
T Consensus       199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~  230 (343)
T 1v5w_A          199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA  230 (343)
T ss_dssp             TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence            1 22234444455543   5667999999854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.56  E-value=0.0058  Score=55.19  Aligned_cols=127  Identities=13%  Similarity=0.017  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc------------CeEEEEEcC----CCCCH----------------H
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF------------DCHAWVRVS----LDYDF----------------R  254 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F------------~~~~wv~vs----~~~~~----------------~  254 (401)
                      .+++|+|+.|+|||||.+.+..-.... +  .|            ..+.++.-.    ...++                .
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~  104 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD  104 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence            689999999999999999996521100 0  00            011111100    00011                1


Q ss_pred             HHHHHHHHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEec
Q 015752          255 RILDDIIKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITV  328 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTT  328 (401)
                      +-..++++.++........... +. +...-.+...|..++=+++||.--.  |+..-..+...+..-  ..|..||++|
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt  184 (240)
T 2onk_A          105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT  184 (240)
T ss_dssp             HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            2344566666554221112222 22 2233345555667778999999866  554444444433321  1255688888


Q ss_pred             CChhHHhh
Q 015752          329 TDPDLLAS  336 (401)
Q Consensus       329 R~~~v~~~  336 (401)
                      .+.+.+..
T Consensus       185 Hd~~~~~~  192 (240)
T 2onk_A          185 HDLIEAAM  192 (240)
T ss_dssp             SCHHHHHH
T ss_pred             CCHHHHHH
Confidence            88765444

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.54  E-value=0.014  Score=53.43  Aligned_cols=128  Identities=16%  Similarity=0.060  Sum_probs=67.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc--------------CeEEEEEcCC----CC----------------C
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF--------------DCHAWVRVSL----DY----------------D  252 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F--------------~~~~wv~vs~----~~----------------~  252 (401)
                      .+++|+|+.|+|||||.+.+..-.... +  .|              ..+.++.-..    ..                .
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  117 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ  117 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence            589999999999999999996521100 0  00              0122221100    11                1


Q ss_pred             HHHHHHHHHHHcCCCCCCccccCc---CHHHHHHHHHHHcC-----CceEEEEEeCCCC--CchhHHHHHhhCCCC--CC
Q 015752          253 FRRILDDIIKSVIPPSRVSVIIGE---DYQLKKSILRDYLT-----NKKYFIVLDDVFD--DSEIWIDVEELLPDD--EN  320 (401)
Q Consensus       253 ~~~~~~~i~~~l~~~~~~~~~~~~---~~~~l~~~l~~~L~-----~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~  320 (401)
                      ......++++.++...........   ...+.....+..+.     .++-+|+||.--.  |+..-..+...+..-  ..
T Consensus       118 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~  197 (266)
T 4g1u_C          118 DRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE  197 (266)
T ss_dssp             HHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcC
Confidence            233445666666554322112222   33333333333333     2788999999866  544444444433321  23


Q ss_pred             CcEEEEecCChhHHhhc
Q 015752          321 GSRVFITVTDPDLLASL  337 (401)
Q Consensus       321 gs~iivTTR~~~v~~~~  337 (401)
                      +..||++|.+.+.+...
T Consensus       198 ~~tvi~vtHdl~~~~~~  214 (266)
T 4g1u_C          198 PLAVCCVLHDLNLAALY  214 (266)
T ss_dssp             SEEEEEECSCHHHHHHH
T ss_pred             CCEEEEEEcCHHHHHHh
Confidence            55788888887766543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.51  E-value=0.011  Score=53.86  Aligned_cols=127  Identities=14%  Similarity=0.120  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-cc---cCeEEEEEcCC----CCCH----------------------HHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY---FDCHAWVRVSL----DYDF----------------------RRILDD  259 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~---F~~~~wv~vs~----~~~~----------------------~~~~~~  259 (401)
                      .+++|+|+.|+|||||.+.++.-.... +.   ...+.++.-..    ..++                      .....+
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~  111 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ  111 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence            479999999999999999997632110 00   01222331100    0111                      122344


Q ss_pred             HHHHcCCCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhH
Q 015752          260 IIKSVIPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDL  333 (401)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v  333 (401)
                      +++.++........... +. +...-.+...|..++=+++||.--.  |...-..+...+..-  ..|..||++|.+.+.
T Consensus       112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  191 (253)
T 2nq2_C          112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ  191 (253)
T ss_dssp             HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred             HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            55555443211111222 22 2223334445556677999999866  554444444433321  226678888988776


Q ss_pred             Hhh
Q 015752          334 LAS  336 (401)
Q Consensus       334 ~~~  336 (401)
                      +..
T Consensus       192 ~~~  194 (253)
T 2nq2_C          192 VVA  194 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.50  E-value=0.013  Score=52.56  Aligned_cols=53  Identities=23%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLA  335 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~  335 (401)
                      -.+.+.|..++=+|+||.--.  |+..-..+...+..-  ..|..||++|.+.+++.
T Consensus       154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~  210 (235)
T 3tif_A          154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR  210 (235)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHT
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            344455566777899999866  544444444444321  22677999999988764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.50  E-value=0.0053  Score=58.82  Aligned_cols=89  Identities=12%  Similarity=-0.024  Sum_probs=54.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~  286 (401)
                      .-.++.|.|.+|+||||||.++...  ....-..++|++....++...     +..++.......-... +.+++...+.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~  134 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD  134 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence            3468999999999999999998763  222223688999888776432     3445433211100111 4455555554


Q ss_pred             HHcC-CceEEEEEeCCCC
Q 015752          287 DYLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       287 ~~L~-~kr~LlVlDdv~~  303 (401)
                      ...+ .+.-+||+|.+-.
T Consensus       135 ~l~~~~~~~lVVIDsl~~  152 (356)
T 1u94_A          135 ALARSGAVDVIVVDSVAA  152 (356)
T ss_dssp             HHHHHTCCSEEEEECGGG
T ss_pred             HHHhccCCCEEEEcCHHH
Confidence            4432 4556999999743

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.50  E-value=0.009  Score=54.25  Aligned_cols=22  Identities=14%  Similarity=0.305  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.++.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.48  E-value=0.017  Score=52.79  Aligned_cols=54  Identities=11%  Similarity=0.231  Sum_probs=33.5

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...|..++=+|+||.--.  |+..-..+...+.. ...|..||++|.+.+.+...
T Consensus       169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~  225 (263)
T 2olj_A          169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV  225 (263)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence            44555666777999999866  54443444433322 12266799999987766543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.46  E-value=0.0075  Score=56.76  Aligned_cols=95  Identities=14%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCccc---------cc-----CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC---
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKF---------YF-----DCHAWVRVSLDYDFRRILDDIIKSVIPPSRV---  270 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---  270 (401)
                      .-.++.|.|.+|+|||+||.+++.......         ..     ..++|++....++...+.+ ++..++.....   
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~  175 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD  175 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence            346899999999999999999876422211         11     4788999888877766553 44555443110   


Q ss_pred             c---cccCc--CHHHHHHHHHHHcC--CceEEEEEeCCCC
Q 015752          271 S---VIIGE--DYQLKKSILRDYLT--NKKYFIVLDDVFD  303 (401)
Q Consensus       271 ~---~~~~~--~~~~l~~~l~~~L~--~kr~LlVlDdv~~  303 (401)
                      .   ....+  ...++...+.+.+.  .+.-+||+|.+-.
T Consensus       176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  215 (322)
T 2i1q_A          176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS  215 (322)
T ss_dssp             TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence            0   01111  22234555666554  4567999999843

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.42  E-value=0.0027  Score=55.47  Aligned_cols=41  Identities=17%  Similarity=0.125  Sum_probs=32.5

Q ss_pred             ccccHHHHHHHHhcC-CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          191 FERGREELFDLLIEG-SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       191 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      |++.++++.+.+... .....+|+|.|..|+|||||++.+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            455677788877653 34567999999999999999998876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.40  E-value=0.0021  Score=56.50  Aligned_cols=38  Identities=16%  Similarity=0.159  Sum_probs=28.5

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.+.+........+++|+|+.|+|||||++.+..
T Consensus         7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A            7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34455555543334567999999999999999999876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.39  E-value=0.038  Score=50.54  Aligned_cols=53  Identities=11%  Similarity=0.050  Sum_probs=33.2

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      .+...|..++-+|+||.--.  |...-..+...+..- ..|..||++|.+...+..
T Consensus       174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~  229 (267)
T 2zu0_C          174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY  229 (267)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence            33444556677899999876  555444444443321 246779999998776544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.30  E-value=0.021  Score=52.41  Aligned_cols=53  Identities=21%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .|.+.|-.++-+|+||.--.  |...-..+...+..-  ..|..||++|.+...+..
T Consensus       166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~  222 (271)
T 2ixe_A          166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER  222 (271)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred             HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence            34455566777999999866  554444444443322  236678888888776543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.26  E-value=0.015  Score=53.33  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=33.3

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      -.+...|..++-+++||.--.  |...-..+...+..- ..|..||++|.+.+.+..
T Consensus       147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~  203 (266)
T 2yz2_A          147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVIN  203 (266)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGG
T ss_pred             HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            344555667778999999866  554444444443321 126678888888665544

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.26  E-value=0.011  Score=54.41  Aligned_cols=55  Identities=20%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             HHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhh
Q 015752          282 KSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       282 ~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~  336 (401)
                      .-.|...|..++=+|+||.--.  |+..-..+...+..-  ..|..||++|.+.+.+..
T Consensus       151 Rv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~  209 (275)
T 3gfo_A          151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPL  209 (275)
T ss_dssp             HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGG
T ss_pred             HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHH
Confidence            3445556667788999999866  544434444333321  126678888877665544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.25  E-value=0.031  Score=52.47  Aligned_cols=52  Identities=19%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .-.++.|.|.+|+||||||..++.+....+  ..++|++..  .+...+...++..
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT  118 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence            346888999999999999999876432222  567888765  3445555555443

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.19  E-value=0.0075  Score=52.51  Aligned_cols=120  Identities=15%  Similarity=0.004  Sum_probs=58.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcC---CCCCHHHHHHHHHHH---cCC--CCCCccccC--c-CH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS---LDYDFRRILDDIIKS---VIP--PSRVSVIIG--E-DY  278 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~~~~~~~~~~i~~~---l~~--~~~~~~~~~--~-~~  278 (401)
                      ..|-|++..|.||||+|-.+.-  +.-.+=-.+.++..-   .......++..+--.   .+.  .... +...  . ..
T Consensus        29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~-~~~~~~~~~a  105 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWET-QNREADTAAC  105 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCG-GGHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCC-CCcHHHHHHH
Confidence            3455666677999999977654  222222233444322   233344444333100   000  0000 0000  0 22


Q ss_pred             HHHHHHHHHHcCCc-eEEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCChh
Q 015752          279 QLKKSILRDYLTNK-KYFIVLDDVFD----DSEIWIDVEELLPDDENGSRVFITVTDPD  332 (401)
Q Consensus       279 ~~l~~~l~~~L~~k-r~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~iivTTR~~~  332 (401)
                      .......++.+.+. -=|||||++-.    .--..+.+...+........||+|+|...
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap  164 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH  164 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence            33444555566554 45999999832    11222445555544455678999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.19  E-value=0.0023  Score=53.78  Aligned_cols=111  Identities=14%  Similarity=0.059  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCcccc-----Cc-CHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVII-----GE-DYQLKKS  283 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-----~~-~~~~l~~  283 (401)
                      .+|+|.|++|+||||+|+.+ .  ..  .|.   ++.      ..+++...+..-+.........     .. .......
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~--~~--g~~---~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-K--ER--GAK---VIV------MSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR   67 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-H--HT--TCE---EEE------HHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-H--HC--CCc---EEE------HhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHH
Confidence            47899999999999999999 4  22  111   222      2344444443322110000000     00 0112233


Q ss_pred             HHHHHc-CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYL-TNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L-~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+.+.+ ....-.+|+|++.. ...++.+...+.  .+...|.+.+-.+......
T Consensus        68 ~~~~~l~~~~~~~vi~dg~~~-~~~~~~l~~~~~--~~~~~i~l~~~~~~~~~R~  119 (179)
T 3lw7_A           68 LCVEELGTSNHDLVVFDGVRS-LAEVEEFKRLLG--DSVYIVAVHSPPKIRYKRM  119 (179)
T ss_dssp             HHHHHHCSCCCSCEEEECCCC-HHHHHHHHHHHC--SCEEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEeCCCC-HHHHHHHHHHhC--CCcEEEEEECCHHHHHHHH
Confidence            344455 23445688999966 666666665543  1223444444444333333

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.19  E-value=0.022  Score=54.55  Aligned_cols=128  Identities=11%  Similarity=0.117  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---cc-----------------CeEEEEEcCC----CCCHH-----------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF-----------------DCHAWVRVSL----DYDFR-----------  254 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-----------------~~~~wv~vs~----~~~~~-----------  254 (401)
                      .+++|+|+.|+|||||.+.+..-.....   .|                 ..+.++.-..    ..++.           
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~  134 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  134 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence            5899999999999999999865211100   00                 1123332111    11211           


Q ss_pred             -------HHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCC
Q 015752          255 -------RILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENG  321 (401)
Q Consensus       255 -------~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~g  321 (401)
                             +...++++.++..........+  .-+...-.|.+.|..++=+|++|.--+  |+..-..+...+..  ...|
T Consensus       135 ~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g  214 (366)
T 3tui_C          135 TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG  214 (366)
T ss_dssp             CCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC
Confidence                   1234455555543221111222  223334455666777888999999866  54444444444332  1236


Q ss_pred             cEEEEecCChhHHhhc
Q 015752          322 SRVFITVTDPDLLASL  337 (401)
Q Consensus       322 s~iivTTR~~~v~~~~  337 (401)
                      ..||++|.+.+++..+
T Consensus       215 ~Tii~vTHdl~~~~~~  230 (366)
T 3tui_C          215 LTILLITHEMDVVKRI  230 (366)
T ss_dssp             CEEEEEESCHHHHHHH
T ss_pred             CEEEEEecCHHHHHHh
Confidence            7788899988776554

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.18  E-value=0.014  Score=51.33  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=43.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc----cccCc-CHHHHHHHH
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS----VIIGE-DYQLKKSIL  285 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~----~~~~~-~~~~l~~~l  285 (401)
                      +|.|.|++|+||||+|+.+..      +|.. ..++      ..+++++-+..-+.-....    ..-.- ..+-....+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~------~~g~-~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv   68 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK------EKGF-VHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI   68 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH------HHCC-EEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH------HHCC-eEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence            678999999999999999987      2321 2232      2233332222100000000    00001 445667777


Q ss_pred             HHHcCCceEEEEEeCCCC
Q 015752          286 RDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       286 ~~~L~~kr~LlVlDdv~~  303 (401)
                      .+.+..... +|||+.-.
T Consensus        69 ~~~l~~~~~-~ilDGfPR   85 (206)
T 3sr0_A           69 EEVFPKHGN-VIFDGFPR   85 (206)
T ss_dssp             HHHCCSSSC-EEEESCCC
T ss_pred             HHhhccCCc-eEecCCch
Confidence            888865444 68999855

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.18  E-value=0.015  Score=55.44  Aligned_cols=128  Identities=16%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---ccC------------eEEEEEcCC----CCCHH---------------H
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YFD------------CHAWVRVSL----DYDFR---------------R  255 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~------------~~~wv~vs~----~~~~~---------------~  255 (401)
                      .+++|+|+.|+|||||.+.++.-.....   .|+            .+.++.-..    ..++.               .
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~  106 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK  106 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            5899999999999999999975211100   011            122221110    11221               2


Q ss_pred             HHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVT  329 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR  329 (401)
                      -..++++.++..........+  .-+...-.|.+.|..++-+|+||.--+  |...-..+...+..  ...|..||++|.
T Consensus       107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH  186 (348)
T 3d31_A          107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH  186 (348)
T ss_dssp             HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            234556666544221112222  223333455566777888999999766  54433334333322  123667888888


Q ss_pred             ChhHHhhc
Q 015752          330 DPDLLASL  337 (401)
Q Consensus       330 ~~~v~~~~  337 (401)
                      +...+..+
T Consensus       187 d~~~~~~~  194 (348)
T 3d31_A          187 DQTEARIM  194 (348)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            87655443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.16  E-value=0.026  Score=49.99  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...++|.|.|++|+||||.|+.+..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999987

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.16  E-value=0.00093  Score=64.15  Aligned_cols=111  Identities=16%  Similarity=0.088  Sum_probs=64.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-c-ccCcCHHHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-V-IIGEDYQLKKSILRD  287 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~-~~~~~~~~l~~~l~~  287 (401)
                      .+++|+|+.|+|||||.+.+..  .+.......+ +++..+....         ........ + ............+..
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La~  191 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALRS  191 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh---------hhccccceeeeeeccccCCHHHHHHH
Confidence            4899999999999999998876  2222212222 2222221100         00000000 0 000011234457888


Q ss_pred             HcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          288 YLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       288 ~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      .|...+=+|++|.+.+ .+.++.+....   ..|..||+||...+.+..
T Consensus       192 aL~~~PdvillDEp~d-~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~  236 (356)
T 3jvv_A          192 ALREDPDIILVGEMRD-LETIRLALTAA---ETGHLVFGTLHTTSAAKT  236 (356)
T ss_dssp             HTTSCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred             HhhhCcCEEecCCCCC-HHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence            8888999999999987 77777655542   236668999988776543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.16  E-value=0.016  Score=55.44  Aligned_cols=128  Identities=14%  Similarity=0.153  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcC----CCCCHH----------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVS----LDYDFR----------------  254 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs----~~~~~~----------------  254 (401)
                      .+++|+|+.|+|||||.+.++.-.....   .|            ..+.++.-.    ...++.                
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~  121 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE  121 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            5899999999999999999864211100   00            122333211    111211                


Q ss_pred             --HHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 015752          255 --RILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFI  326 (401)
Q Consensus       255 --~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iiv  326 (401)
                        +-..++++.++..........+  .-+...-.|.+.|..++=+|+||.--+  |...-..+...+..-  ..|..||+
T Consensus       122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~  201 (355)
T 1z47_A          122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF  201 (355)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence              2234555555543211111222  222333445556667778999999866  544333343333221  12567888


Q ss_pred             ecCChhHHhhc
Q 015752          327 TVTDPDLLASL  337 (401)
Q Consensus       327 TTR~~~v~~~~  337 (401)
                      +|.+...+..+
T Consensus       202 vTHd~~~a~~~  212 (355)
T 1z47_A          202 VTHDQEEALEV  212 (355)
T ss_dssp             ECSCHHHHHHH
T ss_pred             ECCCHHHHHHh
Confidence            88987766554

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.13  E-value=0.0025  Score=54.22  Aligned_cols=22  Identities=5%  Similarity=0.048  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||+|+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.10  E-value=0.065  Score=49.82  Aligned_cols=86  Identities=10%  Similarity=-0.004  Sum_probs=44.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSIL  285 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l  285 (401)
                      ...+++|+|.+|+||||++..+..-...... ..+..+.... .....+.+.......+...     ... +...+...+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-----~~~~~~~~l~~al  177 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPL-----EVCYTKEEFQQAK  177 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCC-----CBCSSHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCe-----EecCCHHHHHHHH
Confidence            3569999999999999999998762221111 1344444322 2333333444333333221     111 334444444


Q ss_pred             HHHcCCceEEEEEeCC
Q 015752          286 RDYLTNKKYFIVLDDV  301 (401)
Q Consensus       286 ~~~L~~kr~LlVlDdv  301 (401)
                      .. + .+.=++++|-.
T Consensus       178 ~~-~-~~~dlvIiDT~  191 (296)
T 2px0_A          178 EL-F-SEYDHVFVDTA  191 (296)
T ss_dssp             HH-G-GGSSEEEEECC
T ss_pred             HH-h-cCCCEEEEeCC
Confidence            43 3 44457888843

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.08  E-value=0.0028  Score=53.40  Aligned_cols=22  Identities=14%  Similarity=0.111  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|.|++|+||||+++.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999976

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.05  E-value=0.055  Score=50.14  Aligned_cols=54  Identities=13%  Similarity=0.043  Sum_probs=35.2

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhC-CCCCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELL-PDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l-~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+.+.|..++=+++||.--.  |...-..+...+ .....|..||++|.+...+..+
T Consensus       169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~  225 (290)
T 2bbs_A          169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA  225 (290)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHS
T ss_pred             HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcC
Confidence            34444556677899999866  666666676643 2323467788999987766443

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=96.04  E-value=0.044  Score=51.84  Aligned_cols=136  Identities=10%  Similarity=-0.012  Sum_probs=81.6

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcC
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGED  277 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  277 (401)
                      +.+.|. + .-..+..++|..|.||++.+..+.+... ...|+....+.+....++.++                     
T Consensus         9 l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l---------------------   64 (343)
T 1jr3_D            9 LRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAI---------------------   64 (343)
T ss_dssp             HHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHH---------------------
T ss_pred             HHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHH---------------------
Confidence            444444 2 3456888999999999999988876211 123432222233333333333                     


Q ss_pred             HHHHHHHHHHH-cCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCC-------hhHHhhchhCCCcce-e
Q 015752          278 YQLKKSILRDY-LTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTD-------PDLLASLEMENGEKI-R  346 (401)
Q Consensus       278 ~~~l~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~-------~~v~~~~~~~~~~~~-~  346 (401)
                          .+.+... +-+++-++|+|++..  ....++.|...+.+...++.+|++|..       ..+...+  .....+ +
T Consensus        65 ----~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i--~sr~~~~~  138 (343)
T 1jr3_D           65 ----FSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTAL--ANRSVQVT  138 (343)
T ss_dssp             ----HHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHH--TTTCEEEE
T ss_pred             ----HHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHH--HhCceEEE
Confidence                2222211 235667888898743  367788888888766667777766543       2344443  133344 8


Q ss_pred             cccccCCCCCCCChHHHHHHHHHhh
Q 015752          347 LDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       347 l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ..      ++  +.++-...+.+.+
T Consensus       139 ~~------~l--~~~~l~~~l~~~~  155 (343)
T 1jr3_D          139 CQ------TP--EQAQLPRWVAARA  155 (343)
T ss_dssp             EC------CC--CTTHHHHHHHHHH
T ss_pred             ee------CC--CHHHHHHHHHHHH
Confidence            88      88  9888888877776

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.98  E-value=0.025  Score=53.90  Aligned_cols=95  Identities=12%  Similarity=0.089  Sum_probs=54.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCccccc----CeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-------cccCc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYF----DCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-------VIIGE  276 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~  276 (401)
                      .-.++.|+|++|+|||||+..++.........    ..++|++....+....+ ..++...+......       .....
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~  208 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS  208 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence            34799999999999999999998632111111    24588887665544333 33444433221000       00111


Q ss_pred             -CHHHHHHHHHHHcC------CceEEEEEeCCCC
Q 015752          277 -DYQLKKSILRDYLT------NKKYFIVLDDVFD  303 (401)
Q Consensus       277 -~~~~l~~~l~~~L~------~kr~LlVlDdv~~  303 (401)
                       ...++...+...+.      .+.-+||+|.+-.
T Consensus       209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta  242 (349)
T 1pzn_A          209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS  242 (349)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence             23344455555553      4678999999865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.97  E-value=0.026  Score=54.05  Aligned_cols=128  Identities=14%  Similarity=0.136  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcCC----CCCHH----------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSL----DYDFR----------------  254 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs~----~~~~~----------------  254 (401)
                      .+++|+|+.|+|||||.+.++.-.....   .|            ..+.++.-..    ..++.                
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  109 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE  109 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            5889999999999999999865211100   00            1123332111    11111                


Q ss_pred             --HHHHHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 015752          255 --RILDDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFI  326 (401)
Q Consensus       255 --~~~~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iiv  326 (401)
                        .-..++++.++..........+ + -+...-.|.+.|..++-+|+||.--+  |...-..+...+..-  ..|..||+
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~  189 (362)
T 2it1_A          110 IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY  189 (362)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence              1234556666554221112222 2 23333445566667778999999755  443333333333221  12567888


Q ss_pred             ecCChhHHhhc
Q 015752          327 TVTDPDLLASL  337 (401)
Q Consensus       327 TTR~~~v~~~~  337 (401)
                      +|.+...+..+
T Consensus       190 vTHd~~~a~~~  200 (362)
T 2it1_A          190 VTHDQAEALAM  200 (362)
T ss_dssp             EESCHHHHHHH
T ss_pred             ECCCHHHHHHh
Confidence            88887665443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.95  E-value=0.007  Score=56.30  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=23.3

Q ss_pred             CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          205 GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       205 ~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ......+|+|.|..|+||||||+.+..
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999998876

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.93  E-value=0.004  Score=52.83  Aligned_cols=22  Identities=14%  Similarity=0.305  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999986

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.92  E-value=0.0047  Score=53.10  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|+|++|+|||||++.+..
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999987

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.91  E-value=0.0048  Score=59.12  Aligned_cols=45  Identities=18%  Similarity=0.119  Sum_probs=35.0

Q ss_pred             ccccccccHHHHHHHHh-------------cCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          187 DISHFERGREELFDLLI-------------EGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|.+..++.+...+.             ........+.++|++|+|||++|+.+++
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            46898888888888773             1111345688999999999999999987

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.85  E-value=0.0043  Score=54.06  Aligned_cols=23  Identities=13%  Similarity=0.078  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|+|++|+||||+++.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999986

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.82  E-value=0.029  Score=53.64  Aligned_cols=128  Identities=14%  Similarity=0.126  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcCC----CCCHH----------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSL----DYDFR----------------  254 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs~----~~~~~----------------  254 (401)
                      .+++|+|+.|+|||||.+.++.-.....   .|            ..+.++.-..    ..++.                
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  109 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE  109 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            5889999999999999999965211100   00            1123331110    11111                


Q ss_pred             --HHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 015752          255 --RILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFI  326 (401)
Q Consensus       255 --~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iiv  326 (401)
                        .-..++++.++..........+  .-+...-.|.+.|..++-+|+||.--+  |...-..+...+..-  ..|..||+
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~  189 (359)
T 2yyz_A          110 VEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY  189 (359)
T ss_dssp             TTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence              1234556666543211111222  222333445556667778999999866  543333333333221  12567888


Q ss_pred             ecCChhHHhhc
Q 015752          327 TVTDPDLLASL  337 (401)
Q Consensus       327 TTR~~~v~~~~  337 (401)
                      +|.+.+.+..+
T Consensus       190 vTHd~~~~~~~  200 (359)
T 2yyz_A          190 VTHDQAEAMTM  200 (359)
T ss_dssp             EESCHHHHHHH
T ss_pred             EcCCHHHHHHh
Confidence            88887766543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.77  E-value=0.029  Score=53.92  Aligned_cols=127  Identities=9%  Similarity=0.070  Sum_probs=65.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcC----CC---------------CCH--
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVS----LD---------------YDF--  253 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs----~~---------------~~~--  253 (401)
                      .+++|+|+.|+|||||.+.++.-.....   .|            ..+.++.-.    ..               ...  
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  117 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE  117 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            5889999999999999999864211000   00            012222100    00               011  


Q ss_pred             -HHHHHHHHHHcCCCCCCc---cccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEE
Q 015752          254 -RRILDDIIKSVIPPSRVS---VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVF  325 (401)
Q Consensus       254 -~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~ii  325 (401)
                       ..-..++++.++......   ...+....+. -.|.+.|..++-+|+||.--+  |...-..+...+..-  ..|..||
T Consensus       118 ~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR-valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi  196 (372)
T 1v43_A          118 IDKRVRWAAELLQIEELLNRYPAQLSGGQRQR-VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI  196 (372)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHH-HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHcCChhHhcCChhhCCHHHHHH-HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence             123455666665432111   1122133333 344555666777899999766  544333343333221  1256788


Q ss_pred             EecCChhHHhhc
Q 015752          326 ITVTDPDLLASL  337 (401)
Q Consensus       326 vTTR~~~v~~~~  337 (401)
                      ++|.+...+..+
T Consensus       197 ~vTHd~~~a~~~  208 (372)
T 1v43_A          197 YVTHDQVEAMTM  208 (372)
T ss_dssp             EEESCHHHHHHH
T ss_pred             EEeCCHHHHHHh
Confidence            888887765443

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.75  E-value=0.0052  Score=52.66  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||+|+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.74  E-value=0.028  Score=54.62  Aligned_cols=94  Identities=9%  Similarity=-0.008  Sum_probs=53.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCccc----ccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc------cccCc--
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS------VIIGE--  276 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------~~~~~--  276 (401)
                      -.++.|+|.+|+|||||+..++-......    .-..++|+.....+....+ ..++..++......      .....  
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~  256 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD  256 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence            35899999999999999997753212211    2346888887776665543 33556555431100      00011  


Q ss_pred             CHHHHHHHHHHHc-CCceEEEEEeCCCC
Q 015752          277 DYQLKKSILRDYL-TNKKYFIVLDDVFD  303 (401)
Q Consensus       277 ~~~~l~~~l~~~L-~~kr~LlVlDdv~~  303 (401)
                      ........+.+.+ ..+.-+||+|.+-.
T Consensus       257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~  284 (400)
T 3lda_A          257 HQLRLLDAAAQMMSESRFSLIVVDSVMA  284 (400)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred             HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence            1122333333433 24678999999744

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.73  E-value=0.19  Score=49.33  Aligned_cols=62  Identities=19%  Similarity=0.051  Sum_probs=38.9

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      |-+.+ .+=..-.++.|.|.+|+||||||..++.+..... =..++|++...  +...+...++..
T Consensus       190 LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~~  251 (444)
T 2q6t_A          190 LDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMCS  251 (444)
T ss_dssp             HHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred             hhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHH
Confidence            43444 4433446888999999999999999886432211 13577776653  445565555543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.72  E-value=0.004  Score=52.60  Aligned_cols=22  Identities=9%  Similarity=0.134  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|+|++|+|||||++.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.71  E-value=0.0061  Score=52.36  Aligned_cols=24  Identities=8%  Similarity=0.088  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.|.|++|+||||+++.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999976

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.70  E-value=0.029  Score=54.03  Aligned_cols=128  Identities=10%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---cc------------CeEEEEEcCC----CCCH-----------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSL----DYDF-----------------  253 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs~----~~~~-----------------  253 (401)
                      .+++|+|+.|+|||||.+.+..-.....   .|            ..+.+|.-..    ..++                 
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~  109 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV  109 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence            5889999999999999999965211100   00            1122331111    1111                 


Q ss_pred             -HHHHHHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 015752          254 -RRILDDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFI  326 (401)
Q Consensus       254 -~~~~~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iiv  326 (401)
                       .+-..++++.++..........+ + -+...-.|.+.|..++-+|+||.--+  |...-..+...+..-  ..|..||+
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~  189 (381)
T 3rlf_A          110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY  189 (381)
T ss_dssp             HHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             HHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence             12344555555543211111222 2 22222334444555667899999766  544334444333321  22667888


Q ss_pred             ecCChhHHhhc
Q 015752          327 TVTDPDLLASL  337 (401)
Q Consensus       327 TTR~~~v~~~~  337 (401)
                      +|.+...+..+
T Consensus       190 vTHd~~ea~~~  200 (381)
T 3rlf_A          190 VTHDQVEAMTL  200 (381)
T ss_dssp             ECSCHHHHHHH
T ss_pred             EECCHHHHHHh
Confidence            88887665544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.69  E-value=0.032  Score=54.75  Aligned_cols=24  Identities=17%  Similarity=0.075  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.++|.+|+||||++..++.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999988875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.69  E-value=0.0074  Score=51.10  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|++|+||||+++.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999876

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.66  E-value=0.0053  Score=52.57  Aligned_cols=22  Identities=9%  Similarity=0.243  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999986

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.66  E-value=0.0072  Score=54.55  Aligned_cols=38  Identities=16%  Similarity=-0.092  Sum_probs=27.4

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.++...+.........|+|.|++|+||||+|+.+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            33444444433234567899999999999999999976

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.65  E-value=0.0066  Score=52.87  Aligned_cols=24  Identities=17%  Similarity=0.134  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|++|+|||||++.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999987

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.65  E-value=0.0054  Score=52.43  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.|.|+|++|+||||+|+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999986

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.63  E-value=0.021  Score=53.46  Aligned_cols=24  Identities=17%  Similarity=0.145  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|.+|+||||++..++.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            457999999999999999999886

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.58  E-value=0.011  Score=59.12  Aligned_cols=42  Identities=14%  Similarity=0.075  Sum_probs=35.7

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.+..++.+...+..+    .-+.|+|++|+|||+||+.+.+
T Consensus        22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGG
T ss_pred             hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHH
Confidence            35789999998888887753    3577999999999999999998

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.58  E-value=0.0068  Score=54.94  Aligned_cols=25  Identities=8%  Similarity=0.088  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+|+|.|++|+||||+|+.+..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999876

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.55  E-value=0.0062  Score=52.15  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999987

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.54  E-value=0.043  Score=52.36  Aligned_cols=128  Identities=18%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-c--cc-----------------CeEEEEEcCC----CCCH------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-F--YF-----------------DCHAWVRVSL----DYDF------------  253 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F-----------------~~~~wv~vs~----~~~~------------  253 (401)
                      .+++|+|+.|+|||||.+.++.-.... .  .|                 ..+.++.-..    ..++            
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~  111 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK  111 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence            588999999999999999986421100 0  01                 1123332111    1111            


Q ss_pred             ------HHHHHHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCC
Q 015752          254 ------RRILDDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENG  321 (401)
Q Consensus       254 ------~~~~~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~g  321 (401)
                            .+-..++++.++..........+ + -+...-.|.+.|..++-+|+||.--+  |...-..+...+..-  ..|
T Consensus       112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g  191 (353)
T 1oxx_K          112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG  191 (353)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence                  12344566666543211111222 2 22333445566667788999999766  544434444333221  225


Q ss_pred             cEEEEecCChhHHhhc
Q 015752          322 SRVFITVTDPDLLASL  337 (401)
Q Consensus       322 s~iivTTR~~~v~~~~  337 (401)
                      ..||++|.+.+.+..+
T Consensus       192 ~tvi~vTHd~~~~~~~  207 (353)
T 1oxx_K          192 VTLLVVSHDPADIFAI  207 (353)
T ss_dssp             CEEEEEESCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHh
Confidence            6788888887765544

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.54  E-value=0.0053  Score=53.20  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|+|++|+|||||++.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.54  E-value=0.005  Score=53.64  Aligned_cols=23  Identities=9%  Similarity=0.202  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|++|+||||+|+.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999976

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.52  E-value=0.013  Score=54.32  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.|.|++|+||||+|+.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999976

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.50  E-value=0.0086  Score=57.31  Aligned_cols=128  Identities=14%  Similarity=0.143  Sum_probs=67.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---cc----------------CeEEEEEcCC----CCC--------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF----------------DCHAWVRVSL----DYD--------------  252 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F----------------~~~~wv~vs~----~~~--------------  252 (401)
                      .+++|+|+.|+|||||.+.++.-.....   .|                ..+.++.-..    ..+              
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~  110 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG  110 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence            5889999999999999999965211100   01                1122221100    011              


Q ss_pred             ----HHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCc
Q 015752          253 ----FRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGS  322 (401)
Q Consensus       253 ----~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs  322 (401)
                          ...-..++++.++..........+  .-+...-.|.+.|..++-+|+||.--+  |...-..+...+..  ...|.
T Consensus       111 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~  190 (359)
T 3fvq_A          111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK  190 (359)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence                122345556665543221111222  223333445555667778999999766  54333333322211  12367


Q ss_pred             EEEEecCChhHHhhc
Q 015752          323 RVFITVTDPDLLASL  337 (401)
Q Consensus       323 ~iivTTR~~~v~~~~  337 (401)
                      .||++|.+...+..+
T Consensus       191 tvi~vTHd~~ea~~~  205 (359)
T 3fvq_A          191 SAVFVSHDREEALQY  205 (359)
T ss_dssp             EEEEECCCHHHHHHH
T ss_pred             EEEEEeCCHHHHHHH
Confidence            788888887766554

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.50  E-value=0.0081  Score=51.99  Aligned_cols=25  Identities=20%  Similarity=0.114  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+..+|+|.|+.|+||||+++.+..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999987

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.49  E-value=0.045  Score=53.78  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.++|.+|+||||++.+++.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            468999999999999999988875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.48  E-value=0.0087  Score=52.02  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+|+|.|++|+||||+++.+.+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999986

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.47  E-value=0.0072  Score=57.20  Aligned_cols=45  Identities=13%  Similarity=0.055  Sum_probs=32.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|.+..+..+...+....  ..-+.|+|++|+|||+||+.+.+.
T Consensus        24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~   68 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL   68 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence            779998886665544443221  223789999999999999999873

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.46  E-value=0.0069  Score=52.44  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|+|.|+.|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999987

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.45  E-value=0.018  Score=50.12  Aligned_cols=22  Identities=18%  Similarity=0.120  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|.|++|+||||+|+.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5899999999999999999987

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.43  E-value=0.0079  Score=51.77  Aligned_cols=23  Identities=9%  Similarity=0.166  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|++|+||||+|+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.43  E-value=0.0081  Score=51.52  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|++|+||||+|+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.43  E-value=0.0077  Score=52.43  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|+.|+|||||++.+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999976

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.39  E-value=0.0077  Score=50.68  Aligned_cols=24  Identities=13%  Similarity=0.130  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|.|++|+||||+++.+..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999976

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.39  E-value=0.008  Score=52.17  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHh
Confidence            5899999999999999999976

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.36  E-value=0.007  Score=51.59  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|.|.|++|+||||+++.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45788999999999999999986

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.36  E-value=0.0091  Score=51.27  Aligned_cols=22  Identities=14%  Similarity=0.148  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999975

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.35  E-value=0.0089  Score=54.49  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999999999999986

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.35  E-value=0.01  Score=51.79  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|++|+||||+++.+..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999976

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.35  E-value=0.048  Score=55.11  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        25 Gei~gLiGpNGaGKSTLlkiL~G   47 (538)
T 3ozx_A           25 NTILGVLGKNGVGKTTVLKILAG   47 (538)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46899999999999999999875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.32  E-value=0.0092  Score=52.38  Aligned_cols=23  Identities=9%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|+|+.|+|||||++.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999987

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.32  E-value=0.0087  Score=54.39  Aligned_cols=22  Identities=18%  Similarity=0.042  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||||+.+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999999976

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.32  E-value=0.0082  Score=52.21  Aligned_cols=22  Identities=14%  Similarity=0.110  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|+|+.|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.31  E-value=0.0076  Score=52.66  Aligned_cols=24  Identities=8%  Similarity=0.231  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|++|+|||||++.+..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            346889999999999999999986

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.29  E-value=0.0096  Score=51.69  Aligned_cols=23  Identities=9%  Similarity=0.202  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+++|+|+.|+|||||++.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999976

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.28  E-value=0.01  Score=51.84  Aligned_cols=24  Identities=21%  Similarity=0.111  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|+.|+|||||++.+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999876

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.28  E-value=0.0097  Score=51.08  Aligned_cols=24  Identities=21%  Similarity=0.062  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....|+|+|++|+||||+++.+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999987

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.28  E-value=0.057  Score=50.96  Aligned_cols=25  Identities=24%  Similarity=0.157  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+++|+|+.|+||||+++.+..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3468999999999999999998876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.27  E-value=0.0071  Score=51.31  Aligned_cols=22  Identities=14%  Similarity=0.134  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|.|++|+||||+|+.+..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3688999999999999999986

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.27  E-value=0.0072  Score=58.22  Aligned_cols=54  Identities=9%  Similarity=-0.111  Sum_probs=33.3

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc-cccCeEEEEEcCCCCC
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-FYFDCHAWVRVSLDYD  252 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~  252 (401)
                      ++++.+..-. .-..++|+|.+|+|||||++.+.+....+ ..+. ++++-+++...
T Consensus       163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~  217 (422)
T 3ice_A          163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPE  217 (422)
T ss_dssp             HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHH
T ss_pred             eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChH
Confidence            4555555422 23478899999999999999887621111 1222 44566777653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.27  E-value=0.0097  Score=50.80  Aligned_cols=23  Identities=22%  Similarity=0.108  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...|+|.|++|+||||+++.+..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999976

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.25  E-value=0.015  Score=55.49  Aligned_cols=43  Identities=16%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             ccccccHHHHHHHHhc--CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          189 SHFERGREELFDLLIE--GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      |..+.-.+++++.+..  ..+....|.|+|++|+||||+++.++.
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            3444555666666642  233456788999999999999998876

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.23  E-value=0.065  Score=51.53  Aligned_cols=55  Identities=13%  Similarity=0.195  Sum_probs=32.4

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|.+.|..++-+|+||.--+  |...-..+...+..-  ..|..||++|.+...+..+
T Consensus       148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~  206 (372)
T 1g29_1          148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTM  206 (372)
T ss_dssp             HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh
Confidence            344555566777999999766  543333333333221  1256788888887766544

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.22  E-value=0.09  Score=51.61  Aligned_cols=25  Identities=20%  Similarity=0.080  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...++|.++|.+|+||||++.++..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3468999999999999999988875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.22  E-value=0.011  Score=51.59  Aligned_cols=22  Identities=23%  Similarity=0.154  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|.|+.|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999975

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.22  E-value=0.0093  Score=52.73  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|+|++|+||||+++.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.20  E-value=0.0072  Score=51.45  Aligned_cols=23  Identities=22%  Similarity=0.085  Sum_probs=16.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.19  E-value=0.082  Score=54.23  Aligned_cols=23  Identities=13%  Similarity=0.151  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|+|+.|+|||||.+.+..
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            35899999999999999999865

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.19  E-value=0.06  Score=51.03  Aligned_cols=51  Identities=12%  Similarity=-0.053  Sum_probs=34.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      .-.++.|.|.+|+||||||..++.+...  .=..++|++..  .+...+...++.
T Consensus        45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls   95 (338)
T 4a1f_A           45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS   95 (338)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence            3458889999999999999998874322  22356777654  345555555544

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.19  E-value=0.0072  Score=51.63  Aligned_cols=22  Identities=9%  Similarity=0.108  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999976

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.18  E-value=0.011  Score=51.31  Aligned_cols=24  Identities=21%  Similarity=0.112  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....|.|.|++|+||||+|+.+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999976

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.17  E-value=0.087  Score=48.97  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+++++|.+|+||||++..++.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.16  E-value=0.0096  Score=51.33  Aligned_cols=23  Identities=13%  Similarity=0.172  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|++|+||||+|+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999986

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.15  E-value=0.011  Score=50.51  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|++|+||||+|+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.14  E-value=0.083  Score=54.19  Aligned_cols=128  Identities=14%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC-eEEEEEcCC----CCCHHHH--------------HHHHHHHcCCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD-CHAWVRVSL----DYDFRRI--------------LDDIIKSVIPP  267 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~-~~~wv~vs~----~~~~~~~--------------~~~i~~~l~~~  267 (401)
                      .+++|+|+.|+|||||.+.++.-.... ..  +. .+.++.-..    ..++.+.              ..++++.++..
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~  462 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII  462 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence            589999999999999999998632111 11  11 233432111    1223222              22344444443


Q ss_pred             CCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          268 SRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       268 ~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      ......... +. +...-.|...|..++-+++||.--.  |...-..+...+..-  ..|..||++|.+...+...
T Consensus       463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~  538 (607)
T 3bk7_A          463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  538 (607)
T ss_dssp             TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            221112333 33 3333455566777788999999766  544434444333221  2356788888887776654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.14  E-value=0.012  Score=50.31  Aligned_cols=24  Identities=25%  Similarity=0.091  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.|.|++|+||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999987

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.13  E-value=0.011  Score=52.28  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...|.|.|++|+||||+|+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999987

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.13  E-value=0.014  Score=52.91  Aligned_cols=37  Identities=16%  Similarity=0.085  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          195 REELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       195 ~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.+...+..+   .....+|.|.|++|+||||+|+.+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34444444432   33457899999999999999999976

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=95.12  E-value=0.012  Score=55.39  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++.+||+|.|-||+||||.+..+..
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~   70 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSA   70 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHH
Confidence            3578999999999999998877754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.11  E-value=0.016  Score=54.60  Aligned_cols=43  Identities=7%  Similarity=-0.054  Sum_probs=30.3

Q ss_pred             ccccccHHHHHHHHhcC--CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          189 SHFERGREELFDLLIEG--SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|-...+..+...+...  .....+|+|.|+.|+|||||++.+..
T Consensus        70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34444444454444443  34567999999999999999998865

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.10  E-value=0.011  Score=53.17  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|+|++|+|||||++.+..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999984

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.10  E-value=0.011  Score=49.61  Aligned_cols=21  Identities=5%  Similarity=-0.097  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999987

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.09  E-value=0.011  Score=50.76  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|+|.|+.|+||||+++.+.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.09  E-value=0.0087  Score=50.41  Aligned_cols=22  Identities=9%  Similarity=0.166  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.081  Score=54.25  Aligned_cols=128  Identities=14%  Similarity=0.079  Sum_probs=68.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccc--c-C-eEEEEEcC--CC--CCHH--------------HHHHHHHHHcCCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFY--F-D-CHAWVRVS--LD--YDFR--------------RILDDIIKSVIPP  267 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F-~-~~~wv~vs--~~--~~~~--------------~~~~~i~~~l~~~  267 (401)
                      .+++|+|+.|+|||||++.++.-......  . . .+.++.-.  ..  .++.              ....++++.++..
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            57999999999999999999753211110  0 0 12222110  00  1121              2233444444433


Q ss_pred             CCCccccCc-CHH-HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752          268 SRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       268 ~~~~~~~~~-~~~-~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~  337 (401)
                      ......... +.. ...-.|.+.|..++=+|+||.--.  |...-..+...+..  ...|..||++|.+...+..+
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~  534 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL  534 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            221112333 333 334456667788888999999765  54433333333322  12356788888887766554

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.98  E-value=0.013  Score=51.13  Aligned_cols=23  Identities=4%  Similarity=0.001  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|++|+||||+++.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.98  E-value=0.058  Score=54.58  Aligned_cols=128  Identities=16%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC-eEEEEEcCC----CCCHHHHHHHH--------------HHHcCCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD-CHAWVRVSL----DYDFRRILDDI--------------IKSVIPP  267 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~-~~~wv~vs~----~~~~~~~~~~i--------------~~~l~~~  267 (401)
                      .+++|+|+.|+|||||++.++.-.... ..  +. .+.++.-..    ..++.+.+...              +..++..
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~  392 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII  392 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence            589999999999999999998632211 11  11 233432111    12333332221              1111111


Q ss_pred             CCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChhHHhhc
Q 015752          268 SRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD--ENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       268 ~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~  337 (401)
                      ......+.. +. +...-.|...|..++-+|+||.--.  |...-..+...+..-  ..|..||++|.+...+..+
T Consensus       393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~  468 (538)
T 1yqt_A          393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  468 (538)
T ss_dssp             GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            100012223 22 3334455666777888999999866  554444444443321  2255688888887766554

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.96  E-value=0.013  Score=49.88  Aligned_cols=24  Identities=13%  Similarity=0.084  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|.|..|+|||||+..+..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999987

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.94  E-value=0.012  Score=52.20  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...|.|.|++|+||||+|+.+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999986

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.93  E-value=0.011  Score=51.60  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++++|+|+.|+|||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999999875

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.92  E-value=0.045  Score=54.10  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHH
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIK  262 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~  262 (401)
                      .++.|..-..+ ..++|+|.+|+|||||++.+..+.... .-..++++-+++..+ ..+++.++..
T Consensus       141 ~ID~L~pi~kG-q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~  204 (473)
T 1sky_E          141 VVDLLAPYIKG-GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKD  204 (473)
T ss_dssp             HHHHHSCEETT-CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccC-CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhh
Confidence            45555431112 357899999999999999988732221 224556677777653 3445554543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.89  E-value=0.052  Score=52.19  Aligned_cols=110  Identities=16%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEE-EEEcCCCCCHHHHHHHHHHHcCCCCCCc-c-ccCcCHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHA-WVRVSLDYDFRRILDDIIKSVIPPSRVS-V-IIGEDYQLKKSI  284 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~-~~~~~~~~l~~~  284 (401)
                      .-.+++|+|+.|+|||||++.+..  .+.......+ ++.  .+...         .+.....-. + ....+.......
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e--~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~  201 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIE--DPIEY---------VFKHKKSIVNQREVGEDTKSFADA  201 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEE--SSCCS---------CCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEec--ccHhh---------hhccCceEEEeeecCCCHHHHHHH
Confidence            346899999999999999998876  2222112233 322  11110         000000000 0 000011122446


Q ss_pred             HHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 015752          285 LRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLL  334 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~  334 (401)
                      +...|...+-+|++|.+.+ .+.+..+....   ..|..||.|+...++.
T Consensus       202 l~~~L~~~pd~illdE~~d-~e~~~~~l~~~---~~g~~vi~t~H~~~~~  247 (372)
T 2ewv_A          202 LRAALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAI  247 (372)
T ss_dssp             HHHHTTSCCSEEEESCCCS-HHHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred             HHHHhhhCcCEEEECCCCC-HHHHHHHHHHH---hcCCEEEEEECcchHH
Confidence            6677766777999999976 65554433332   2356688888876543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.89  E-value=0.014  Score=50.95  Aligned_cols=23  Identities=4%  Similarity=-0.149  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|+.|+||||+++.+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.87  E-value=0.081  Score=57.00  Aligned_cols=124  Identities=16%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccC---eEEEEEcCCC-------CCH-----------HHHHHHHHHHcCCCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFD---CHAWVRVSLD-------YDF-----------RRILDDIIKSVIPPS  268 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~-------~~~-----------~~~~~~i~~~l~~~~  268 (401)
                      .+++|+|+.|+|||||.+.+... .+. .++   ..-.+.+.+.       .++           ..-...+++.++...
T Consensus       462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~  539 (986)
T 2iw3_A          462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD  539 (986)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence            47899999999999999999841 111 111   0001222221       111           223445566665521


Q ss_pred             C-CccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          269 R-VSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       269 ~-~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      . ......+  .-+...-.|...|..++-+|+||.--+  |...-..+...+..  .|..||++|.+......+
T Consensus       540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~  611 (986)
T 2iw3_A          540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV  611 (986)
T ss_dssp             HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence            0 0011222  222333344455556777999999766  55544555554443  366788888887766554

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.86  E-value=0.022  Score=50.14  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .....|+|+|.+|+|||||+..+...
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            35688999999999999999998863

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.83  E-value=0.024  Score=54.23  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4455555654445678999999999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.82  E-value=0.013  Score=51.89  Aligned_cols=24  Identities=13%  Similarity=-0.130  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....|.|.|++|+||||+++.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999987

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.81  E-value=0.046  Score=48.03  Aligned_cols=45  Identities=11%  Similarity=0.094  Sum_probs=30.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcc---c-ccCeEEEEEcCCCCCH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVK---F-YFDCHAWVRVSLDYDF  253 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~  253 (401)
                      -.+++|+|++|+|||||++.++......   . .-...+|+.-...+..
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~   73 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP   73 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence            4689999999999999999997522111   1 1235788876554443

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.75  E-value=0.017  Score=50.06  Aligned_cols=23  Identities=9%  Similarity=0.003  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999987

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.75  E-value=0.06  Score=62.04  Aligned_cols=87  Identities=13%  Similarity=-0.001  Sum_probs=56.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSIL  285 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l  285 (401)
                      .-+.+.|+|++|+|||+||.++..  .....=..++|+.....++...     +..++.+...- .+..  ..++....+
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l-~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNL-LCSQPDTGEQALEIC 1497 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTC-EEECCSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhc-eeecCChHHHHHHHH
Confidence            456889999999999999999977  3333334678888888777655     44554321111 0111  444555555


Q ss_pred             HHHcC-CceEEEEEeCCC
Q 015752          286 RDYLT-NKKYFIVLDDVF  302 (401)
Q Consensus       286 ~~~L~-~kr~LlVlDdv~  302 (401)
                      ....+ .+.-+||+|.+.
T Consensus      1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HHHHHHTCCSEEEESCGG
T ss_pred             HHHHhcCCCCEEEEcChh
Confidence            55543 577899999984

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.74  E-value=0.016  Score=50.69  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.72  E-value=0.017  Score=50.18  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..-.+|+|.|+.|+||||+++.+..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999999876

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.71  E-value=0.019  Score=48.86  Aligned_cols=23  Identities=17%  Similarity=0.049  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+|+|.|+.|+||||+++.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999976

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.69  E-value=0.019  Score=53.93  Aligned_cols=25  Identities=12%  Similarity=-0.011  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+++|.|+.|+|||||++.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3457999999999999999999876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.69  E-value=0.02  Score=52.90  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+|+|.|+.|+||||+|+.+..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999873

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.69  E-value=0.062  Score=54.31  Aligned_cols=128  Identities=18%  Similarity=0.180  Sum_probs=64.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc-cc--cC--eEEEEEcC--C--CCCHHHHHHH---------------HHHHcC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK-FY--FD--CHAWVRVS--L--DYDFRRILDD---------------IIKSVI  265 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~--~~~wv~vs--~--~~~~~~~~~~---------------i~~~l~  265 (401)
                      .+++|+|+.|+|||||++.++.-.... ..  +.  .+.++.-.  .  ..++.+.+..               +++.++
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~  374 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN  374 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence            489999999999999999998632111 00  11  12222110  1  1123322221               111111


Q ss_pred             CCCCCccccCc-CH-HHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhhc
Q 015752          266 PPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       266 ~~~~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~  337 (401)
                      ........... +. +...-.|.+.|..++=+|+||.--.  |...-..+...+..  ...|..||++|.+...+..+
T Consensus       375 l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~  452 (538)
T 3ozx_A          375 LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI  452 (538)
T ss_dssp             GGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            11000011222 22 2333445556667788899999766  54433334333322  12356788888887776654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.68  E-value=0.016  Score=50.59  Aligned_cols=23  Identities=4%  Similarity=0.245  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|+|+|+.|+|||||++.+..
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHh
Confidence            46889999999999999999986

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.67  E-value=0.02  Score=51.51  Aligned_cols=24  Identities=4%  Similarity=0.058  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|.|+.|+|||||++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.66  E-value=0.021  Score=50.12  Aligned_cols=38  Identities=32%  Similarity=0.269  Sum_probs=27.8

Q ss_pred             ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +..+.+...+..  ....+|+|+|.+|+|||||+..+...
T Consensus        16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            334444444432  35789999999999999999998763

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.65  E-value=0.016  Score=50.81  Aligned_cols=21  Identities=14%  Similarity=0.167  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.63  E-value=0.02  Score=50.31  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.61  E-value=0.0085  Score=52.39  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|+|.|..|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999876

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.59  E-value=0.2  Score=50.00  Aligned_cols=53  Identities=11%  Similarity=0.108  Sum_probs=35.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      ..-.++.|.|.+|+||||||.+++.+..... =..++|++...  +...+...++.
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~  292 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG  292 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHH
Confidence            3446888999999999999999886432221 23577777654  34555555543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.58  E-value=0.099  Score=49.36  Aligned_cols=110  Identities=12%  Similarity=0.053  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL  289 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L  289 (401)
                      ..++|+|+.|+|||||++.+..-  +.. -...+.+.-.......           .......-...........+...|
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~-----------~~~~~i~~~~ggg~~~r~~la~aL  237 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFK-----------HHKNYTQLFFGGNITSADCLKSCL  237 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCS-----------SCSSEEEEECBTTBCHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeeccccc-----------cchhEEEEEeCCChhHHHHHHHHh
Confidence            47899999999999999999872  221 2344444322111100           000000000000112334556677


Q ss_pred             CCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          290 TNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       290 ~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      ..++-+|++|..-+ .+.++.+... .. + +.-+|+||...+....+
T Consensus       238 ~~~p~ilildE~~~-~e~~~~l~~~-~~-g-~~tvi~t~H~~~~~~~~  281 (330)
T 2pt7_A          238 RMRPDRIILGELRS-SEAYDFYNVL-CS-G-HKGTLTTLHAGSSEEAF  281 (330)
T ss_dssp             TSCCSEEEECCCCS-THHHHHHHHH-HT-T-CCCEEEEEECSSHHHHH
T ss_pred             hhCCCEEEEcCCCh-HHHHHHHHHH-hc-C-CCEEEEEEcccHHHHHh
Confidence            77888999999977 6666655433 22 1 22367777766554433

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.58  E-value=0.018  Score=52.22  Aligned_cols=23  Identities=13%  Similarity=0.185  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|+|+.|+|||||++.+..
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999984

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.56  E-value=0.083  Score=51.68  Aligned_cols=24  Identities=21%  Similarity=0.059  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|.+|+||||++..++.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999988875

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.55  E-value=0.15  Score=50.24  Aligned_cols=51  Identities=24%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD  250 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~  250 (401)
                      .|-+.+ .+=..-.++.|.|.+|+||||+|.+++.+....  =..++|++...+
T Consensus       186 ~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms  236 (444)
T 3bgw_A          186 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG  236 (444)
T ss_dssp             HHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred             HHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence            344444 333344688899999999999999988743222  235777765543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.52  E-value=0.022  Score=49.95  Aligned_cols=24  Identities=8%  Similarity=-0.006  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.|.|+.|+||||+++.+..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999876

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.51  E-value=0.018  Score=50.51  Aligned_cols=21  Identities=10%  Similarity=0.091  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.49  E-value=0.016  Score=51.36  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999999876

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.49  E-value=0.016  Score=51.12  Aligned_cols=23  Identities=9%  Similarity=-0.000  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999976

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.43  E-value=0.024  Score=47.59  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-.+++|+|+.|+|||||++.++.
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.38  E-value=0.022  Score=53.21  Aligned_cols=24  Identities=25%  Similarity=0.173  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|++|+|||||++.++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            356999999999999999999874

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.36  E-value=0.045  Score=51.53  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|.+|+||||++..++.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998876

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=94.34  E-value=0.13  Score=50.99  Aligned_cols=104  Identities=14%  Similarity=0.186  Sum_probs=60.8

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCC-----CC
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPS-----RV  270 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~-----~~  270 (401)
                      +.++.|..-.. -.-++|.|.+|+|||+|+..+.++. .+.+-+.++++-+++... ..+++.++...-....     ..
T Consensus       154 rvID~l~pigk-Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r  231 (498)
T 1fx0_B          154 KVVNLLAPYRR-GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK  231 (498)
T ss_dssp             TTHHHHSCCCT-TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred             eEeeeeccccc-CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence            34555544222 2357899999999999999888732 123446788888888775 4566666665422210     01


Q ss_pred             c----cccCc------CHHHHHHHHHHHc---CCceEEEEEeCCC
Q 015752          271 S----VIIGE------DYQLKKSILRDYL---TNKKYFIVLDDVF  302 (401)
Q Consensus       271 ~----~~~~~------~~~~l~~~l~~~L---~~kr~LlVlDdv~  302 (401)
                      .    ...+.      -.....-.+.+++   +++.+||++||+-
T Consensus       232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit  276 (498)
T 1fx0_B          232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF  276 (498)
T ss_dssp             EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            0    00010      1122233444555   3689999999973

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=94.33  E-value=0.13  Score=50.77  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=43.3

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHH
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKS  263 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~  263 (401)
                      +.++.|..-.. -.-++|.|.+|+|||+|+..+.++. .+.+-+.++++-+++... +.++++++...
T Consensus       142 r~ID~l~pigk-GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~  207 (482)
T 2ck3_D          142 KVVDLLAPYAK-GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES  207 (482)
T ss_dssp             HHHHHHSCEET-TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred             EEEeccccccc-CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence            45666654211 2357899999999999999888732 123345677888888764 45666666654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.29  E-value=0.022  Score=50.51  Aligned_cols=116  Identities=9%  Similarity=0.071  Sum_probs=58.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-C----------CCHHHHHHHHHHHcC-CCCCCc-cccC
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-D----------YDFRRILDDIIKSVI-PPSRVS-VIIG  275 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~----------~~~~~~~~~i~~~l~-~~~~~~-~~~~  275 (401)
                      -.+++|+|+.|+|||||.+.+...... ..+...+.++-.. .          +.....+..+...-. ...... ....
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p-~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPL-YDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCT-TTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC-CceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            458999999999999999999863221 0122222222110 0          111223333322100 000000 0011


Q ss_pred             cCHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 015752          276 EDYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLA  335 (401)
Q Consensus       276 ~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~  335 (401)
                      ...   ...+.+.+... -+++|| + + ......+...++   .+..|+++|.+.+.+.
T Consensus        95 g~~---~~~v~~~l~~G-~illLD-L-D-~~~~~~i~~~l~---~~~tI~i~th~~~~l~  144 (219)
T 1s96_A           95 GTS---REAIEQVLATG-VDVFLD-I-D-WQGAQQIRQKMP---HARSIFILPPSKIELD  144 (219)
T ss_dssp             EEE---HHHHHHHHTTT-CEEEEE-C-C-HHHHHHHHHHCT---TCEEEEEECSSHHHHH
T ss_pred             CCC---HHHHHHHHhcC-CeEEEE-E-C-HHHHHHHHHHcc---CCEEEEEECCCHHHHH
Confidence            111   12344455433 567888 4 4 666677887776   3677899998865543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.24  E-value=0.055  Score=47.08  Aligned_cols=89  Identities=10%  Similarity=0.021  Sum_probs=46.8

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccc-cCcCHHHHHHHHHHHc
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI-IGEDYQLKKSILRDYL  289 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~~L  289 (401)
                      .|+|-|.-|+||||.++.+++  ..+.....+++..-.......+.+..++..-........- +..+..+....+...|
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L   79 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL   79 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            478889999999999999987  4444333344444333333444555555432211000000 0002233445566666


Q ss_pred             CCceEEEEEeCCC
Q 015752          290 TNKKYFIVLDDVF  302 (401)
Q Consensus       290 ~~kr~LlVlDdv~  302 (401)
                      .... .+|.|-..
T Consensus        80 ~~g~-~Vi~DRy~   91 (197)
T 3hjn_A           80 SEGY-AVLLDRYT   91 (197)
T ss_dssp             TTTC-EEEEESCH
T ss_pred             HCCC-eEEecccc
Confidence            5443 56777653

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.23  E-value=0.033  Score=54.80  Aligned_cols=46  Identities=13%  Similarity=0.067  Sum_probs=34.7

Q ss_pred             CccccccccHHHHHHHHhcC------------CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEG------------SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|-++.++.+...+...            ....+-|.++|++|+||||+|+.++.
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence            56788888888876666321            11235588999999999999999987

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.17  E-value=0.05  Score=48.49  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-..|+|.|++|+||||+++.+.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999873

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.16  E-value=0.025  Score=49.05  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|+|.|+.|+||||+++.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999976

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.15  E-value=0.092  Score=53.08  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             HHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChh
Q 015752          258 DDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPD  332 (401)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~  332 (401)
                      .++++.++..........+  .-+...-.|.+.|..++=+|+||.--+  |...-..+...+.. ...|..||++|.+..
T Consensus       140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~  219 (538)
T 1yqt_A          140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA  219 (538)
T ss_dssp             HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            4566666654321112222  223333445556667778999999766  54432333222211 013667888888877


Q ss_pred             HHhhc
Q 015752          333 LLASL  337 (401)
Q Consensus       333 v~~~~  337 (401)
                      .+..+
T Consensus       220 ~~~~~  224 (538)
T 1yqt_A          220 VLDYL  224 (538)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66554

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.12  E-value=0.14  Score=49.34  Aligned_cols=54  Identities=15%  Similarity=0.003  Sum_probs=33.9

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc-cccCeEEEEEcCCCC
Q 015752          196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-FYFDCHAWVRVSLDY  251 (401)
Q Consensus       196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~  251 (401)
                      -++++.|..-..+ .-++|+|.+|+|||+|+..+.+..... ..+. ++++-+++..
T Consensus       163 iraID~l~PigrG-QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~  217 (427)
T 3l0o_A          163 TRLIDLFAPIGKG-QRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP  217 (427)
T ss_dssp             HHHHHHHSCCBTT-CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred             chhhhhcccccCC-ceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence            4667777653222 356899999999999999888732111 1222 3456666643

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.10  E-value=0.025  Score=49.65  Aligned_cols=21  Identities=14%  Similarity=-0.012  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999976

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.09  E-value=0.015  Score=49.48  Aligned_cols=22  Identities=14%  Similarity=0.232  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|..|+|||||++.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999876

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.08  E-value=0.028  Score=50.09  Aligned_cols=23  Identities=17%  Similarity=0.053  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...|.|.|++|+||||+|+.+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999987

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.08  E-value=0.025  Score=50.11  Aligned_cols=21  Identities=14%  Similarity=0.112  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999976

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.03  E-value=0.018  Score=51.23  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=15.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhh-c
Q 015752          210 SVVAILDSGGFDKTAFAADTY-N  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~-~  231 (401)
                      .+++|+|+.|+|||||++.+. .
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~   50 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEK   50 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            589999999999999999998 5

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.00  E-value=0.29  Score=49.84  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999865

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.98  E-value=0.024  Score=49.08  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +++|+|+.|+|||||++.++..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            6889999999999999988763

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.98  E-value=0.078  Score=60.25  Aligned_cols=89  Identities=12%  Similarity=-0.015  Sum_probs=57.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~  286 (401)
                      .-.++.|.|.+|+||||||.+++...  ...-..++|++....++..     .+..++.+.....-... +.+++...+.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~  454 (1706)
T 3cmw_A          382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD  454 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence            34689999999999999999987632  2223478999988877753     24555543221101112 5566666665


Q ss_pred             HHc-CCceEEEEEeCCCC
Q 015752          287 DYL-TNKKYFIVLDDVFD  303 (401)
Q Consensus       287 ~~L-~~kr~LlVlDdv~~  303 (401)
                      ... +.+.-+||+|.+-.
T Consensus       455 ~lv~~~~~~lVVIDSL~a  472 (1706)
T 3cmw_A          455 ALARSGAVDVIVVDSVAA  472 (1706)
T ss_dssp             HHHHHTCCSEEEESCSTT
T ss_pred             HHHHhcCCCEEEECCHHH
Confidence            544 34566999999865

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.96  E-value=0.022  Score=51.64  Aligned_cols=22  Identities=14%  Similarity=0.034  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|+|+.|+||||+++.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999976

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.95  E-value=0.033  Score=52.03  Aligned_cols=25  Identities=16%  Similarity=-0.003  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+|+|+|+.|+|||||++.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999999876

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.95  E-value=0.11  Score=59.97  Aligned_cols=103  Identities=15%  Similarity=-0.010  Sum_probs=63.9

Q ss_pred             cHHHHHHHHh-cCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCcc
Q 015752          194 GREELFDLLI-EGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSV  272 (401)
Q Consensus       194 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~  272 (401)
                      -...|-..|. .+=..-.++.|.|++|+||||||.+++...  ...-..++|++....++...     +..++.+.....
T Consensus       367 G~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~  439 (2050)
T 3cmu_A          367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL  439 (2050)
T ss_dssp             SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCE
T ss_pred             CCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeE
Confidence            3445555553 222344689999999999999999998733  22224688998888776542     455554322210


Q ss_pred             ccCc-CHHHHHHHHHHHc-CCceEEEEEeCCCC
Q 015752          273 IIGE-DYQLKKSILRDYL-TNKKYFIVLDDVFD  303 (401)
Q Consensus       273 ~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~~  303 (401)
                      -... +.+++...+.... +.+.-+||+|.+-.
T Consensus       440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a  472 (2050)
T 3cmu_A          440 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA  472 (2050)
T ss_dssp             EECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred             EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence            0111 5666666666544 34567999999854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.93  E-value=0.033  Score=51.95  Aligned_cols=24  Identities=21%  Similarity=0.159  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|+.|+||||+++.++.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346999999999999999998865

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.91  E-value=0.03  Score=47.79  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+++|+|..|+|||||+..+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999999999886

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.89  E-value=0.17  Score=49.82  Aligned_cols=50  Identities=16%  Similarity=0.177  Sum_probs=32.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDI  260 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i  260 (401)
                      .-.++.|.|.+|+|||||+..++.+..... -..++|++...  +...+...+
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~  251 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRM  251 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHH
Confidence            345889999999999999999887432211 12577776544  334444444

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.89  E-value=0.03  Score=51.79  Aligned_cols=22  Identities=14%  Similarity=0.305  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999886

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.83  E-value=0.03  Score=50.15  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|++|+||||+++.+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999976

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=93.83  E-value=0.23  Score=50.94  Aligned_cols=80  Identities=16%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             HHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChh
Q 015752          258 DDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPD  332 (401)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~  332 (401)
                      .++++.++..........+ + -+...-.|...|..++=+|+||.--+  |...-..+...+.. ...|..||++|.+..
T Consensus       210 ~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~  289 (607)
T 3bk7_A          210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA  289 (607)
T ss_dssp             HHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence            4556666554221112222 2 22333345555667778999999866  54432333222221 013667899999887


Q ss_pred             HHhhc
Q 015752          333 LLASL  337 (401)
Q Consensus       333 v~~~~  337 (401)
                      .+..+
T Consensus       290 ~~~~~  294 (607)
T 3bk7_A          290 VLDYL  294 (607)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            76554

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=93.82  E-value=0.045  Score=57.85  Aligned_cols=94  Identities=16%  Similarity=0.152  Sum_probs=56.7

Q ss_pred             CccccccccHHHHHHHHhcC-----------CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIEG-----------SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .++.|.++.+++|.+.+.-.           -...+-+.++|++|.|||.||+.+++  .....|     +.++    ..
T Consensus       477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~----~~  545 (806)
T 3cf2_A          477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GP  545 (806)
T ss_dssp             TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECC----HH
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEec----cc
Confidence            66778888777776655321           12234577999999999999999998  333222     2222    11


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~  303 (401)
                          +++....+.         +...+...+...-+..+++|+||++..
T Consensus       546 ----~l~s~~vGe---------se~~vr~lF~~Ar~~~P~IifiDEiDs  581 (806)
T 3cf2_A          546 ----ELLTMWFGE---------SEANVREIFDKARQAAPCVLFFDELDS  581 (806)
T ss_dssp             ----HHHTTTCSS---------CHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred             ----hhhccccch---------HHHHHHHHHHHHHHcCCceeechhhhH
Confidence                222222221         344444444433356789999999854

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.78  E-value=0.082  Score=48.78  Aligned_cols=39  Identities=10%  Similarity=0.072  Sum_probs=26.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcC
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS  248 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs  248 (401)
                      -.+++|.|.+|+|||||++.++....... -..+.|+...
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e   73 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE   73 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence            35899999999999999999876322211 1145566543

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=93.76  E-value=0.33  Score=46.77  Aligned_cols=44  Identities=14%  Similarity=0.129  Sum_probs=31.6

Q ss_pred             ccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          187 DISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|....+.++.+.+.. ...... +.|.|.+|+|||++|+.+..
T Consensus       138 ~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~  182 (387)
T 1ny5_A          138 EYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHK  182 (387)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred             hhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHH
Confidence            456666667777666643 223344 47999999999999999976

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.75  E-value=0.042  Score=48.84  Aligned_cols=39  Identities=21%  Similarity=0.115  Sum_probs=27.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL  249 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~  249 (401)
                      -.++.|.|.+|+|||||+.+++...  ...-..++|++...
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE   61 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence            3588999999999999998876522  11223577777554

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.74  E-value=0.051  Score=45.25  Aligned_cols=23  Identities=9%  Similarity=0.130  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..|+|+|.+|+|||||...+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999999764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.74  E-value=0.031  Score=49.19  Aligned_cols=22  Identities=27%  Similarity=0.194  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.72  E-value=0.034  Score=52.68  Aligned_cols=22  Identities=14%  Similarity=0.222  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|.|+.|+||||||..++.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5899999999999999999887

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.72  E-value=0.04  Score=52.08  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|.|+|+.|+|||||+..++.
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.71  E-value=0.036  Score=54.19  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+|.|+|++|+||||+|+.+..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999887

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.70  E-value=0.043  Score=49.47  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....++.+.|.||+||||++..+..
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHH
Confidence            3567889999999999999999975

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=93.70  E-value=0.022  Score=52.86  Aligned_cols=24  Identities=8%  Similarity=0.147  Sum_probs=18.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..+|+|.|..|+||||+|+.+.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999876

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.69  E-value=0.049  Score=46.13  Aligned_cols=26  Identities=12%  Similarity=0.061  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ....-|+|+|.+|+|||||...+.+.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34567889999999999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.66  E-value=0.034  Score=47.28  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|.+|+|||||.+.+...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999999873

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=93.64  E-value=0.066  Score=54.94  Aligned_cols=42  Identities=12%  Similarity=0.053  Sum_probs=36.0

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.+..++.+...+..+    ..+.|+|++|+||||||+.+..
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence            77899988888887777653    3788999999999999999987

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.58  E-value=0.036  Score=50.55  Aligned_cols=54  Identities=13%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+...|..++=+|+||.--.  |+..-..+...+.. ...|..||++|.+.+.+...
T Consensus       163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~  219 (262)
T 1b0u_A          163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV  219 (262)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            34444556677999999866  54443444333322 11266788889987766543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.50  E-value=0.039  Score=49.62  Aligned_cols=53  Identities=9%  Similarity=0.139  Sum_probs=31.9

Q ss_pred             HHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChhHHhh
Q 015752          284 ILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDD-ENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       284 ~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~  336 (401)
                      .+...|..++-+++||.--.  |+..-..+...+..- ..|..||++|.+.+.+..
T Consensus       149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~  204 (240)
T 1ji0_A          149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALK  204 (240)
T ss_dssp             HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            44455566778999999866  554444444333221 136668888888755443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=93.46  E-value=0.059  Score=51.90  Aligned_cols=35  Identities=11%  Similarity=0.043  Sum_probs=26.0

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++-+.-+-....+++|+|++|+|||||++.+..
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            34444433333456899999999999999999986

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=93.46  E-value=0.04  Score=51.82  Aligned_cols=22  Identities=14%  Similarity=0.185  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|+|+.|+||||||+.+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999886

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.45  E-value=0.04  Score=47.29  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...|+|+|.+|+|||||.+.+...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            457899999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.40  E-value=0.041  Score=50.03  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.++.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.38  E-value=0.045  Score=48.85  Aligned_cols=25  Identities=16%  Similarity=-0.015  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+|+|.|+.|+||||+++.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.37  E-value=0.042  Score=49.72  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.++.
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999986

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.36  E-value=0.051  Score=47.62  Aligned_cols=36  Identities=11%  Similarity=0.092  Sum_probs=26.5

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..+..++.. -+....+.|+|++|+||||+|..+++
T Consensus        45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence            5556665543 22234688999999999999988887

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.35  E-value=0.045  Score=49.28  Aligned_cols=23  Identities=17%  Similarity=0.109  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|+|+.|+|||||.+.++.
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.34  E-value=0.048  Score=52.18  Aligned_cols=24  Identities=21%  Similarity=0.159  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|+.|+||||+++.++.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            357999999999999999998865

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.33  E-value=0.043  Score=49.59  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.+..
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4899999999999999999965

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.30  E-value=0.05  Score=44.57  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=93.29  E-value=0.64  Score=41.10  Aligned_cols=105  Identities=13%  Similarity=0.063  Sum_probs=53.3

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc-cCcccccC-eEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN-NHVKFYFD-CHAWVRVSLDYDFRRILDDIIKSVIPPSRVS  271 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~  271 (401)
                      ..++++..+..+    ..+.|.|..|+||||+...+.-+ ........ ..+.+..........+...+...++......
T Consensus        65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~  140 (235)
T 3llm_A           65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS  140 (235)
T ss_dssp             GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred             HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence            345566666543    47889999999999866554322 11111222 2333333322223344445544443321110


Q ss_pred             ---------------cccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC
Q 015752          272 ---------------VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD  303 (401)
Q Consensus       272 ---------------~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~  303 (401)
                                     .++-- +...+...+...+.+- -+||+|.++.
T Consensus       141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~  187 (235)
T 3llm_A          141 CGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE  187 (235)
T ss_dssp             EEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred             EEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence                           00111 5566666666644443 4789999965

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.28  E-value=0.041  Score=47.43  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...|+|+|.+|+|||||.+.+...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            356889999999999999999864

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=93.21  E-value=0.054  Score=53.18  Aligned_cols=102  Identities=12%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC----eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD----CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS  271 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~  271 (401)
                      +.++.|..=..+. -++|.|..|+|||+|+..+.+....  +-+    .++++-+++... +.+++.++...=.......
T Consensus       140 raID~l~pigrGQ-r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvv  216 (465)
T 3vr4_D          140 SAIDHLNTLVRGQ-KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVM  216 (465)
T ss_dssp             HHHHTTSCCBTTC-BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEE
T ss_pred             eEEecccccccCC-EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEE
Confidence            3455554322222 3578899999999999999884333  222    567777777654 4455555544210000000


Q ss_pred             --cccCc-CH-----HHHHHHHHHHc---CCceEEEEEeCC
Q 015752          272 --VIIGE-DY-----QLKKSILRDYL---TNKKYFIVLDDV  301 (401)
Q Consensus       272 --~~~~~-~~-----~~l~~~l~~~L---~~kr~LlVlDdv  301 (401)
                        ...+. ..     ....-.+.+++   +|+.+||++||+
T Consensus       217 V~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl  257 (465)
T 3vr4_D          217 FMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM  257 (465)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence              00111 11     11222344554   379999999997

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=93.20  E-value=0.12  Score=45.54  Aligned_cols=23  Identities=13%  Similarity=-0.032  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -..|.|.|+.|+||||+++.+.+
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            36889999999999999999987

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.20  E-value=0.048  Score=48.49  Aligned_cols=24  Identities=21%  Similarity=0.057  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-.+|+|.|+.|+|||||++.+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457999999999999999999887

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=93.19  E-value=0.16  Score=54.64  Aligned_cols=47  Identities=15%  Similarity=0.185  Sum_probs=30.4

Q ss_pred             CCceEEEEEeCCCC--CchhHHH----HHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          290 TNKKYFIVLDDVFD--DSEIWID----VEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       290 ~~kr~LlVlDdv~~--~~~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      ..++-||+||..-.  |+.+-..    +...+.. ..|+.+|++|.+.+++..+
T Consensus       739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la  791 (934)
T 3thx_A          739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA  791 (934)
T ss_dssp             CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence            46788999999966  4432222    2233321 2478999999998876544

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.17  E-value=0.047  Score=49.76  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.+..
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999975

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=93.15  E-value=0.052  Score=50.79  Aligned_cols=23  Identities=22%  Similarity=0.138  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+|+|.|+.|+||||||..++.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            35889999999999999999976

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=93.09  E-value=0.16  Score=51.80  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=25.8

Q ss_pred             ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +...+.+..+..    .+++.|.|.+|.||||++..+..
T Consensus       192 ~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~  226 (574)
T 3e1s_A          192 EEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVAD  226 (574)
T ss_dssp             HHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHH
Confidence            344455555543    35788999999999999988876

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=93.09  E-value=0.092  Score=47.92  Aligned_cols=36  Identities=8%  Similarity=0.041  Sum_probs=27.3

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-+..||....+....+.++|++|.|||.+|..+++
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            445666654323345788999999999999999987

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.05  E-value=0.054  Score=49.40  Aligned_cols=112  Identities=19%  Similarity=0.221  Sum_probs=57.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE-cCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  286 (401)
                      .-.+++|+|+.|+|||||.+.+..  .+...+...+++. ..-.+-.... ..++.+        .....+...+...+.
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q--------~~~gl~~~~l~~~la   92 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQ--------REVGEDTKSFADALR   92 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSEEEE--------EEBTTTBSCHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-ceeeeH--------HHhCCCHHHHHHHHH
Confidence            346899999999999999998876  2222223333332 1100000000 000000        000000112244555


Q ss_pred             HHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 015752          287 DYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLL  334 (401)
Q Consensus       287 ~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~  334 (401)
                      ..|..++=+|++|..-+ .+....+....   ..|.-|++||.+.++.
T Consensus        93 ~aL~~~p~illlDEp~D-~~~~~~~l~~~---~~g~~vl~t~H~~~~~  136 (261)
T 2eyu_A           93 AALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAI  136 (261)
T ss_dssp             HHHHHCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred             HHHhhCCCEEEeCCCCC-HHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence            55555677888899875 55544433332   2366788888876543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.03  E-value=0.062  Score=45.46  Aligned_cols=24  Identities=8%  Similarity=0.095  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...|+|+|.+|+|||||...+...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999863

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.02  E-value=0.081  Score=44.15  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +...|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999998764

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=93.01  E-value=0.085  Score=52.44  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--  271 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--  271 (401)
                      +.++.|..-..+ .-++|.|.+|+|||+|| ..+.+..    .-+ .++++-+++... +.++...+...=.......  
T Consensus       164 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~  238 (515)
T 2r9v_A          164 KAIDSMIPIGRG-QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV  238 (515)
T ss_dssp             HHHHHHSCEETT-CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred             cccccccccccC-CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence            455656542112 34678999999999996 4666632    245 357777887654 4455555554211100000  


Q ss_pred             cccCc-CHH-----HHHHHHHHHc--CCceEEEEEeCCC
Q 015752          272 VIIGE-DYQ-----LKKSILRDYL--TNKKYFIVLDDVF  302 (401)
Q Consensus       272 ~~~~~-~~~-----~l~~~l~~~L--~~kr~LlVlDdv~  302 (401)
                      ...++ ...     ...-.+.+++  +|+.+||++||+-
T Consensus       239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT  277 (515)
T 2r9v_A          239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS  277 (515)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence            00111 111     1122333444  5899999999973

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.00  E-value=0.058  Score=52.97  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|.+|+||||++..+..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988876

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.99  E-value=0.049  Score=44.61  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+++|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=92.96  E-value=0.058  Score=48.22  Aligned_cols=23  Identities=13%  Similarity=0.037  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...|+|.|..|+||||+++.+..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36799999999999999999987

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.95  E-value=0.052  Score=50.04  Aligned_cols=22  Identities=14%  Similarity=0.018  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.++.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4889999999999999999965

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=92.93  E-value=0.083  Score=50.67  Aligned_cols=46  Identities=15%  Similarity=0.029  Sum_probs=31.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|....+.++...+..-......+.|.|.+|.||+++|+.+..
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~  174 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR  174 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH
Confidence            3567777666666655532111223356899999999999999876

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.93  E-value=0.053  Score=45.09  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            346889999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=92.89  E-value=0.066  Score=49.97  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.|.|+.|+||||||..++.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHH
Confidence            357899999999999999999986

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.88  E-value=0.098  Score=49.52  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=25.7

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +++-+.-.-....+++|+|++|+|||||.+.+..
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4444433334567999999999999999999864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.88  E-value=0.052  Score=44.73  Aligned_cols=24  Identities=8%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            345789999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.87  E-value=0.054  Score=49.62  Aligned_cols=121  Identities=11%  Similarity=0.042  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc--------ccCeEEEEEcCCCCCHHHHHHH---------------HHHHcCC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF--------YFDCHAWVRVSLDYDFRRILDD---------------IIKSVIP  266 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~wv~vs~~~~~~~~~~~---------------i~~~l~~  266 (401)
                      .++.|+|.+|+|||||+..+........        .-..+++++.....  ..+...               +++.+..
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~~~~~l~l  108 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVADGLLI  108 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHHHEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhhccCceEE
Confidence            5899999999999999998875221110        01245677665543  222111               1222221


Q ss_pred             CCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC----Cc---hhHHHHHhhCCCC--CCCcEEEEecCChhHH
Q 015752          267 PSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD----DS---EIWIDVEELLPDD--ENGSRVFITVTDPDLL  334 (401)
Q Consensus       267 ~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~----~~---~~~~~l~~~l~~~--~~gs~iivTTR~~~v~  334 (401)
                      .......... +..+ ...+...+.+ .-+||||.+-.    |.   .....+...|..-  ..|+.||++|......
T Consensus       109 ~~~~~~~~~~ls~g~-~~~i~~l~~~-~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          109 QPLIGSLPNIMAPEW-FDGLKRAAEG-RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             CCCTTSCCCTTSHHH-HHHHHHHHTT-CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred             eecCCCCcccCCHHH-HHHHHHhcCC-CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence            1110001222 3333 3445555544 56899999743    22   1123333333221  2367788888765543

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=92.86  E-value=0.084  Score=52.37  Aligned_cols=100  Identities=17%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--  271 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--  271 (401)
                      +.++.|..-..+ .-++|.|.+|+|||+|| ..+.+..    +-+ .++++-+++... +.++..++...-.......  
T Consensus       151 raID~l~PigrG-QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~  225 (502)
T 2qe7_A          151 KAIDSMIPIGRG-QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT  225 (502)
T ss_dssp             HHHHHSSCCBTT-CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred             eecccccccccC-CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence            455555542222 34678999999999995 4666632    234 357777887654 4455556554221111000  


Q ss_pred             cccCc-CHHH-----HHHHHHHHc--CCceEEEEEeCC
Q 015752          272 VIIGE-DYQL-----KKSILRDYL--TNKKYFIVLDDV  301 (401)
Q Consensus       272 ~~~~~-~~~~-----l~~~l~~~L--~~kr~LlVlDdv  301 (401)
                      ...++ ....     ..-.+.+++  +|+.+||++||+
T Consensus       226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl  263 (502)
T 2qe7_A          226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL  263 (502)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence            01111 1111     112333444  589999999997

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=92.83  E-value=0.055  Score=50.53  Aligned_cols=24  Identities=8%  Similarity=0.124  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-.+++|+|+.|+|||||++.+..
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhh
Confidence            346899999999999999998864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.82  E-value=0.046  Score=49.64  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +...|+|.|..|+||||+++.+.+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999998877

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.79  E-value=0.07  Score=44.11  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .--|+|+|.+|+|||||...+.+.
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            346789999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.76  E-value=0.1  Score=49.46  Aligned_cols=35  Identities=14%  Similarity=0.177  Sum_probs=25.8

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.+-+.....+..+|+|+|.+|+|||||+..+..
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34443333334678999999999999999998864

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=92.74  E-value=0.065  Score=49.27  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|+|.|-||+||||+|..+..
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~   24 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHH
Confidence            47888999999999999988876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=92.73  E-value=0.066  Score=53.28  Aligned_cols=24  Identities=17%  Similarity=0.174  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|..|+|||||++.+..
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            457999999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.72  E-value=0.061  Score=50.47  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|+.|+|||||.+.+..
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~   26 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILN   26 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred             cccEEEEEecCCCCHHHHHHHHHh
Confidence            478999999999999999999985

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=92.71  E-value=0.1  Score=51.91  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=48.0

Q ss_pred             EEEEEcCCCCchHHHH-HHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCC--------CCCCccccCc---
Q 015752          211 VVAILDSGGFDKTAFA-ADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIP--------PSRVSVIIGE---  276 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~--------~~~~~~~~~~---  276 (401)
                      -++|.|.+|+|||+|| ..+.+..  .  -+ .++++-+++... +.++..++...-..        ..++.....-   
T Consensus       165 R~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~  240 (507)
T 1fx0_A          165 RELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP  240 (507)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred             EEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence            4678999999999995 5777632  2  34 457777887654 33444444331100        0000000000   


Q ss_pred             -CHHHHHHHHHHHcCCceEEEEEeCCC
Q 015752          277 -DYQLKKSILRDYLTNKKYFIVLDDVF  302 (401)
Q Consensus       277 -~~~~l~~~l~~~L~~kr~LlVlDdv~  302 (401)
                       ..-.+++.++.  +|+.+||++||+-
T Consensus       241 ~~a~tiAEyfrd--~G~dVLli~Dslt  265 (507)
T 1fx0_A          241 YTGAALAEYFMY--RERHTLIIYDDLS  265 (507)
T ss_dssp             HHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred             HHHHHHHHHHHH--cCCcEEEEEecHH
Confidence             12233344444  5899999999973

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.70  E-value=0.057  Score=44.54  Aligned_cols=21  Identities=29%  Similarity=0.240  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -|+|+|.+|+|||||...+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            467999999999999999875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.68  E-value=0.32  Score=49.64  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|+|+.|+|||||++.+..
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999998865

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=92.67  E-value=0.21  Score=49.51  Aligned_cols=99  Identities=16%  Similarity=0.148  Sum_probs=54.5

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhcccCcccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNNHVKFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--  271 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--  271 (401)
                      +.++.|..-..+ .-++|.|..|+|||+|+ ..+.+.    .+-+ .++++-+++... +.++..++...=.......  
T Consensus       151 kaID~l~PigrG-QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~  225 (513)
T 3oaa_A          151 KAVDSMIPIGRG-QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV  225 (513)
T ss_dssp             HHHHHHSCCBTT-CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred             eeeccccccccC-CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence            455656542222 34678899999999996 566662    2233 467888888764 4455565544311110000  


Q ss_pred             cccCc-C---------HHHHHHHHHHHcCCceEEEEEeCCC
Q 015752          272 VIIGE-D---------YQLKKSILRDYLTNKKYFIVLDDVF  302 (401)
Q Consensus       272 ~~~~~-~---------~~~l~~~l~~~L~~kr~LlVlDdv~  302 (401)
                      ...++ .         .-.+++.++.  +|+.+||++||+.
T Consensus       226 atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt  264 (513)
T 3oaa_A          226 ATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS  264 (513)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred             ECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence            00111 1         1123333333  6899999999983

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.63  E-value=0.063  Score=44.09  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999999764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=92.61  E-value=0.1  Score=52.17  Aligned_cols=25  Identities=16%  Similarity=0.127  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+|+|+|.+|+||||++.++..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999998874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.56  E-value=0.06  Score=45.68  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||+..+...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45789999999999999999764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=92.56  E-value=0.32  Score=52.46  Aligned_cols=53  Identities=19%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.|...|-.++-+||||.--+  |......+...+..-  +..||++|.+.+.....
T Consensus       910 VaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l  964 (986)
T 2iw3_A          910 LVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNL  964 (986)
T ss_dssp             HHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTT
T ss_pred             HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHh
Confidence            345555677888999999755  555555665555433  33688888887766544

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.55  E-value=0.064  Score=44.30  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999999764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.54  E-value=0.061  Score=49.30  Aligned_cols=21  Identities=10%  Similarity=0.417  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|+|+.|+|||||.+.++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999875

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=92.50  E-value=0.071  Score=48.30  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++|+|.|-||+||||+|..+..
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~   23 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEecCCCCcHHHHHHHHHH
Confidence            5788899999999999988876

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.48  E-value=0.066  Score=45.00  Aligned_cols=23  Identities=13%  Similarity=0.044  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.46  E-value=0.074  Score=49.39  Aligned_cols=24  Identities=21%  Similarity=0.059  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|.+|+||||++..++.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999986

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=92.43  E-value=0.076  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|.|++|+||||||..+..
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999976

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.42  E-value=0.065  Score=44.07  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|.+|+|||||...+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.38  E-value=0.071  Score=43.94  Aligned_cols=22  Identities=14%  Similarity=0.234  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|.+|+|||||...+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=92.38  E-value=0.09  Score=55.39  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=29.3

Q ss_pred             CCceEEEEEeCC---CC--CchhH-HHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          290 TNKKYFIVLDDV---FD--DSEIW-IDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       290 ~~kr~LlVlDdv---~~--~~~~~-~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      ..++-|++||..   -+  |.... ..+...+..  .|+.+|++|.+.+....
T Consensus       653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~  703 (765)
T 1ewq_A          653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTAL  703 (765)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTC
T ss_pred             ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHh
Confidence            678899999998   33  22211 123333333  47889999999887653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.37  E-value=0.066  Score=43.90  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|.+|+|||||...+.+.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999988754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.35  E-value=0.071  Score=43.99  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      --|+|+|.+|+|||||...+.+.
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35789999999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.34  E-value=0.079  Score=45.05  Aligned_cols=25  Identities=12%  Similarity=-0.000  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ....|+|+|.+|+|||||...+...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3457889999999999999999864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.33  E-value=0.11  Score=46.28  Aligned_cols=23  Identities=13%  Similarity=-0.003  Sum_probs=18.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -..|.|.|+.|+||||+++.+.+
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999987

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.26  E-value=0.093  Score=43.34  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      --|+|+|.+|+|||||...+..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=92.25  E-value=0.15  Score=46.42  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=26.4

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ++...+.........|+++|.+|+|||||...+...
T Consensus        27 ~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           27 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             HHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            344444444444567889999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.23  E-value=0.074  Score=44.43  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4556889999999999999988764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.23  E-value=0.066  Score=52.18  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++|+|..|+|||||.+.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            456999999999999999999976

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.21  E-value=0.07  Score=45.15  Aligned_cols=24  Identities=13%  Similarity=0.106  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            345789999999999999998764

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=92.16  E-value=0.2  Score=53.81  Aligned_cols=47  Identities=13%  Similarity=0.119  Sum_probs=30.2

Q ss_pred             CCceEEEEEeCCCC--CchhHHH----HHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          290 TNKKYFIVLDDVFD--DSEIWID----VEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       290 ~~kr~LlVlDdv~~--~~~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      ..++-||+||..-.  |+.+-..    +...+.. ..|+.||++|.+.+++...
T Consensus       750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~-~~g~tvl~vTH~~el~~l~  802 (918)
T 3thx_B          750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR-DVKSLTLFVTHYPPVCELE  802 (918)
T ss_dssp             CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCCEEEEECSCGGGGGHH
T ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-hcCCeEEEEeCcHHHHHHH
Confidence            56788999999876  4432222    2233321 2478999999998776543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=92.15  E-value=0.22  Score=56.74  Aligned_cols=88  Identities=13%  Similarity=-0.004  Sum_probs=61.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccc-cCcCHHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVI-IGEDYQLKKSILRD  287 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~  287 (401)
                      -++|-|.|+.|+||||||.++..  .....=..++|+.....++..-     +..++.+...--- -++..++....+..
T Consensus      1431 g~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A         1431 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence            46899999999999999999986  4555556789999988887653     6777765443200 11144555555555


Q ss_pred             HcC-CceEEEEEeCCCC
Q 015752          288 YLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       288 ~L~-~kr~LlVlDdv~~  303 (401)
                      .++ +..-+||+|-|-.
T Consensus      1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A         1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp             HHHHTCCSEEEESCSTT
T ss_pred             HHHcCCCCEEEEccHHh
Confidence            554 5677999999844

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.13  E-value=0.074  Score=43.69  Aligned_cols=21  Identities=10%  Similarity=0.018  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||||...+.+.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999998753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.13  E-value=0.086  Score=44.82  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +...|+|+|.+|+|||||...+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.12  E-value=0.057  Score=50.47  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|+|+.|+|||||++.+..
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHc
Confidence            35899999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.10  E-value=0.11  Score=48.28  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=26.2

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhh
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTY  230 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~  230 (401)
                      .++++.+.+..     .+++|+|+.|+|||||.+.+.
T Consensus       155 gi~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          155 GIDELVDYLEG-----FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             THHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred             CHHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence            36677776642     478999999999999999997

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.08  E-value=0.08  Score=43.66  Aligned_cols=23  Identities=9%  Similarity=0.260  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45789999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.05  E-value=0.075  Score=45.20  Aligned_cols=24  Identities=17%  Similarity=0.065  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .--|+|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999887654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.04  E-value=0.089  Score=45.80  Aligned_cols=25  Identities=12%  Similarity=-0.000  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ....|.|+|.+|+|||||...+.+.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567889999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.04  E-value=0.36  Score=50.08  Aligned_cols=54  Identities=15%  Similarity=0.131  Sum_probs=31.7

Q ss_pred             HHHHHcCCc--eEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          284 ILRDYLTNK--KYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       284 ~l~~~L~~k--r~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      .|.+.|..+  .-+|+||.--.  |+..-..+...+.. ...|..||++|.+.+++..+
T Consensus       212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~  270 (670)
T 3ux8_A          212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAA  270 (670)
T ss_dssp             HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHC
T ss_pred             HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhC
Confidence            333444344  34999999866  55444444433321 12366799999998876543

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.03  E-value=0.086  Score=53.06  Aligned_cols=24  Identities=13%  Similarity=0.101  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.++|++|+||||+|+.+..
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~   57 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTR   57 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999976

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=92.03  E-value=0.14  Score=46.30  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=27.2

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .++.+.+.........|+|+|.+|+|||||...+...
T Consensus        23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3444445444445567889999999999999999864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.02  E-value=0.093  Score=43.75  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            4456789999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.01  E-value=0.096  Score=44.01  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456789999999999999998864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.00  E-value=0.078  Score=44.78  Aligned_cols=22  Identities=5%  Similarity=0.078  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|.+|+|||||...+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.99  E-value=0.084  Score=44.04  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .--|+|+|.+|+|||||...+.+.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            345789999999999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=91.99  E-value=0.064  Score=46.39  Aligned_cols=24  Identities=17%  Similarity=-0.007  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -..|+|+|.+|+|||||.+.+...
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999988763

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.99  E-value=0.078  Score=44.20  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            346789999999999999998754

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=91.98  E-value=0.23  Score=49.85  Aligned_cols=58  Identities=12%  Similarity=0.075  Sum_probs=39.6

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH-HHHHH
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR-RILDD  259 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~  259 (401)
                      +.++.|..-. +-.-++|.|..|+|||+|+..+.+..    +-+.++++-+++..+.. +++.+
T Consensus       216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~  274 (588)
T 3mfy_A          216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEE  274 (588)
T ss_dssp             HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred             chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence            4566665421 12457899999999999999987632    23578888888877643 44444

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.97  E-value=0.08  Score=43.61  Aligned_cols=23  Identities=9%  Similarity=0.146  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999998753

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=91.96  E-value=0.17  Score=44.49  Aligned_cols=52  Identities=12%  Similarity=0.032  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      ..|.|.|..|+||||+++.+.+.... ..+..+.+..-.....+.+.+++++.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence            47899999999999999999873221 23333344333333334555666665

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.94  E-value=0.079  Score=44.96  Aligned_cols=22  Identities=18%  Similarity=0.040  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-|+|+|.+|+|||||.+.+.+
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999977764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=91.94  E-value=0.075  Score=45.69  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...-|+|+|.+|+|||||...+..
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHh
Confidence            345788999999999999999853

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=91.94  E-value=0.084  Score=52.85  Aligned_cols=43  Identities=5%  Similarity=-0.106  Sum_probs=29.0

Q ss_pred             ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.+..+.+.+..-...++..+|.+.|++|+||||+|+.+..
T Consensus       375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~  417 (511)
T 1g8f_A          375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS  417 (511)
T ss_dssp             TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence            3344444444443321223457899999999999999999987

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.92  E-value=0.099  Score=43.84  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            456889999999999999998854

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=91.92  E-value=0.16  Score=45.44  Aligned_cols=52  Identities=12%  Similarity=0.004  Sum_probs=32.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDII  261 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~  261 (401)
                      ...|.|.|+.|+||||+++.+..... ...+..+....-.......+.+++++
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l   78 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV   78 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence            36899999999999999999987322 23455344443332222334444444

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.91  E-value=0.099  Score=44.00  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      --|+|+|.+|+|||||...+.+.
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999999764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=91.90  E-value=0.097  Score=49.80  Aligned_cols=24  Identities=17%  Similarity=0.014  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|.+|+|||||...+..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            467999999999999999999875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.90  E-value=0.085  Score=44.89  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .--|+|+|.+|+|||||...+.+.
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            345789999999999999888764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.90  E-value=0.11  Score=44.03  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ....|+|+|.+|+|||||...+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3456889999999999999999865

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=91.86  E-value=0.091  Score=44.46  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.+|+|..|+|||||+..++-
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999998864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.85  E-value=0.089  Score=43.49  Aligned_cols=24  Identities=21%  Similarity=0.072  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+...
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999999754

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=91.83  E-value=0.15  Score=45.28  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc-----cccCc-CHHHHHHH
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS-----VIIGE-DYQLKKSI  284 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~-~~~~l~~~  284 (401)
                      .|.+.|.||+||||+|..+..... ...++ +..+.+...-+...  ..++..+.......     ..... +....   
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~---   80 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL---   80 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence            477889999999999988876321 22333 33444443323221  11222222210000     00111 22222   


Q ss_pred             HHHHcCCceEEEEEeCCCC-------CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 015752          285 LRDYLTNKKYFIVLDDVFD-------DSEIWIDVEELLPDDENGSRVFITVTDP  331 (401)
Q Consensus       285 l~~~L~~kr~LlVlDdv~~-------~~~~~~~l~~~l~~~~~gs~iivTTR~~  331 (401)
                      +.    .+.=++|+|++-+       ....|..+...++.   |..++.|+.-+
T Consensus        81 L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq  127 (228)
T 2r8r_A           81 LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ  127 (228)
T ss_dssp             HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred             Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence            22    2456999998754       13467777765543   55788888755

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=91.80  E-value=0.072  Score=45.89  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=24.1

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +++.+.-... ..-|+|+|.+|+|||||...+.++
T Consensus        15 ~l~~~~~~~~-~~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           15 VLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             HHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             HHHHhhccCC-CcEEEEECCCCCCHHHHHHHHhcC
Confidence            4444532222 345789999999999999998763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.79  E-value=0.085  Score=43.92  Aligned_cols=25  Identities=12%  Similarity=0.157  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhccc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      ..-|+|+|.+|+|||||...+.+..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568899999999999999997643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=91.77  E-value=0.12  Score=43.02  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4457889999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.76  E-value=0.09  Score=44.25  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            456789999999999999998764

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=91.73  E-value=0.6  Score=41.50  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=54.1

Q ss_pred             EEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCC---C--------CCCccccCc-CHH
Q 015752          212 VAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIP---P--------SRVSVIIGE-DYQ  279 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---~--------~~~~~~~~~-~~~  279 (401)
                      +.|+|+.|.|||.+|..+....    . ..++++. ..    ..+..++.+.+..   .        ......+-- +.+
T Consensus       111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~  180 (237)
T 2fz4_A          111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD  180 (237)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence            6788999999999998877632    1 2234433 11    1233333333221   1        000001111 334


Q ss_pred             HHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec
Q 015752          280 LKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITV  328 (401)
Q Consensus       280 ~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTT  328 (401)
                      .+..... .+.++--+||+|.+.. ....+..+...++.   ..++++|.
T Consensus       181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~---~~~l~LSA  226 (237)
T 2fz4_A          181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSIA---PFRLGLTA  226 (237)
T ss_dssp             HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCCC---SEEEEEEE
T ss_pred             HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhccC---CEEEEEec
Confidence            4444333 3344556999999987 44567777776652   34555553

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.73  E-value=0.085  Score=45.05  Aligned_cols=23  Identities=17%  Similarity=0.096  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.+.
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36789999999999999998863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.70  E-value=0.11  Score=43.14  Aligned_cols=23  Identities=13%  Similarity=0.133  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.++
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999998754

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=91.68  E-value=0.13  Score=51.19  Aligned_cols=105  Identities=13%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHH-HHhhcccCc----ccccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCCCC
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFA-ADTYNNNHV----KFYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPPSR  269 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~  269 (401)
                      +.++.|..=..+ .-++|.|.+|+|||+|| ..+.+....    .++-+ .++++-+++... +.++.+.+...=.....
T Consensus       151 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t  229 (510)
T 2ck3_A          151 KAVDSLVPIGRG-QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT  229 (510)
T ss_dssp             HHHHHHSCCBTT-CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred             eeeccccccccC-CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence            456666542222 34678999999999995 466662211    12234 477788888764 44555555542111100


Q ss_pred             Cc--cccCc-CHHH-----HHHHHHHHc--CCceEEEEEeCCC
Q 015752          270 VS--VIIGE-DYQL-----KKSILRDYL--TNKKYFIVLDDVF  302 (401)
Q Consensus       270 ~~--~~~~~-~~~~-----l~~~l~~~L--~~kr~LlVlDdv~  302 (401)
                      ..  ...++ ....     ..-.+.+++  +|+.+||++||+-
T Consensus       230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt  272 (510)
T 2ck3_A          230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS  272 (510)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred             eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence            00  00111 1111     112333444  5899999999973

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=91.67  E-value=0.076  Score=46.48  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|.|+.|+||||+++.+..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998876

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=91.65  E-value=0.092  Score=50.84  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|.|+.|+||||||..++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            5889999999999999998876

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=91.65  E-value=0.96  Score=50.69  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..|+|+|..|+|||||++.+..
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4789999999999999999965

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.64  E-value=0.096  Score=43.97  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      --|+|+|.+|+|||||...+.++
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999988754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.61  E-value=0.09  Score=44.39  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=91.61  E-value=0.096  Score=43.93  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            346789999999999999999764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=91.55  E-value=0.18  Score=44.81  Aligned_cols=53  Identities=9%  Similarity=-0.033  Sum_probs=32.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCccc--ccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKF--YFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      ....|.|.|..|+||||+++.+.+  ....  .++......-.......+.+++++.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~--~l~~~~g~~v~~~treP~~t~~g~~ir~~l~   74 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAE--YLSEIYGVNNVVLTREPGGTLLNESVRNLLF   74 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH--HHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH--HHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence            457899999999999999999987  3332  3444331222222223445555555

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.55  E-value=0.12  Score=43.81  Aligned_cols=26  Identities=12%  Similarity=0.188  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhccc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      ...-|+|+|.+|+|||||...+.++.
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34568899999999999999998643

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.54  E-value=0.09  Score=46.90  Aligned_cols=22  Identities=18%  Similarity=0.068  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|.|++|+||||+|+.+.+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.54  E-value=0.069  Score=44.70  Aligned_cols=23  Identities=9%  Similarity=0.108  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.53  E-value=0.097  Score=44.87  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..-|+|+|.+|+|||||...+..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34578999999999999998874

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=91.52  E-value=0.14  Score=44.79  Aligned_cols=50  Identities=14%  Similarity=0.167  Sum_probs=30.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      +.|+|-|.-|+||||+++.+.+  .....++.+. ..-.........++.++.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v~~-~~eP~~t~~g~~ir~~l~   52 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDVIM-TREPGGVPTGEEIRKIVL   52 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH--HHTTTSCEEE-EESSTTCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH--HHHCCCCEEE-eeCCCCChHHHHHHHHHh
Confidence            4688999999999999999987  3444444332 222222233444555543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.49  E-value=0.094  Score=44.60  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+...
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999998764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.48  E-value=0.1  Score=43.69  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45779999999999999998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.45  E-value=0.1  Score=43.63  Aligned_cols=23  Identities=13%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45789999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.45  E-value=0.1  Score=44.76  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+..+
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3456889999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.41  E-value=0.097  Score=50.03  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...++|+|..|+|||||++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998875

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=91.40  E-value=0.12  Score=50.71  Aligned_cols=103  Identities=12%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc--------cccC-eEEEEEcCCCCC-HHHHHHHHHHHcCCC
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK--------FYFD-CHAWVRVSLDYD-FRRILDDIIKSVIPP  267 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~  267 (401)
                      .++.|..=..+ .-++|.|.+|+|||+|+..+.+.....        ++=+ .++++-+++... +.++..++...=...
T Consensus       137 aID~l~pigrG-Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~  215 (464)
T 3gqb_B          137 TIDVMNTLVRG-QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS  215 (464)
T ss_dssp             HHHTTSCCBTT-CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred             eeecccccccC-CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence            44545432222 235688999999999999998754331        1112 566777777654 445555544320000


Q ss_pred             CCCc--cccCc-CHH-----HHHHHHHHHc---CCceEEEEEeCC
Q 015752          268 SRVS--VIIGE-DYQ-----LKKSILRDYL---TNKKYFIVLDDV  301 (401)
Q Consensus       268 ~~~~--~~~~~-~~~-----~l~~~l~~~L---~~kr~LlVlDdv  301 (401)
                      ....  ...+. ...     ...-.+.+++   +|+.+||++||+
T Consensus       216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl  260 (464)
T 3gqb_B          216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM  260 (464)
T ss_dssp             GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred             ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence            0000  00111 111     1222344554   379999999997

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.39  E-value=0.11  Score=43.83  Aligned_cols=26  Identities=12%  Similarity=0.023  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhccc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      ...-|+|+|.+|+|||||...+.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            34567899999999999999998654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=91.34  E-value=0.1  Score=44.65  Aligned_cols=23  Identities=4%  Similarity=0.099  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..-|+|+|.+|+|||||.+.+.+
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            34577999999999999997766

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=91.34  E-value=0.11  Score=44.68  Aligned_cols=22  Identities=14%  Similarity=-0.102  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++.|+|+.|+||||++..++.
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999866654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.31  E-value=0.13  Score=44.14  Aligned_cols=25  Identities=32%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4456889999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=91.30  E-value=0.15  Score=47.34  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++++.+++..     .+++|+|++|+|||||.+.+..
T Consensus       159 gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          159 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred             CHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcc
Confidence            46677777643     4789999999999999999986

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.28  E-value=0.1  Score=43.55  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346789999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.26  E-value=0.1  Score=44.62  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345789999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.25  E-value=0.11  Score=44.34  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            346789999999999999999764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.23  E-value=0.14  Score=45.00  Aligned_cols=25  Identities=8%  Similarity=0.081  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999999764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.22  E-value=0.13  Score=44.63  Aligned_cols=25  Identities=12%  Similarity=0.016  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhccc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      ...|+|+|.+|+|||||...+.+..
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4567899999999999999997643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.21  E-value=0.086  Score=44.27  Aligned_cols=24  Identities=21%  Similarity=0.033  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...-|+|+|.+|+|||||...+..
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345678999999999999999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=91.20  E-value=0.11  Score=44.57  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999998764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=91.19  E-value=0.19  Score=49.60  Aligned_cols=21  Identities=19%  Similarity=0.137  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.|.|.+|.|||+++..+..
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~   67 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIE   67 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            888999999999999988876

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.18  E-value=0.14  Score=43.58  Aligned_cols=27  Identities=11%  Similarity=-0.021  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhccc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      ....-|+|+|.+|+|||||...+.+..
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            345678899999999999999998643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.17  E-value=0.24  Score=41.82  Aligned_cols=25  Identities=20%  Similarity=0.020  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999853

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=91.16  E-value=0.12  Score=51.35  Aligned_cols=24  Identities=8%  Similarity=0.045  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|.++|++|+||||+++.+..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~   61 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTR   61 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            346888999999999999999986

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=91.16  E-value=0.11  Score=45.30  Aligned_cols=22  Identities=18%  Similarity=0.039  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|.|+.|+||||+++.+..
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~   28 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAE   28 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            5899999999999999999987

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.14  E-value=0.11  Score=44.24  Aligned_cols=24  Identities=8%  Similarity=0.109  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .--|+|+|.+|+|||||...+...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345789999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.12  E-value=0.14  Score=43.46  Aligned_cols=24  Identities=13%  Similarity=0.001  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            345789999999999999999764

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=91.11  E-value=0.067  Score=54.79  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -+.++|++|+|||+||+.+.+
T Consensus       329 ~vLL~GppGtGKT~LAr~la~  349 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISR  349 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSST
T ss_pred             ceEEECCCchHHHHHHHHHHH
Confidence            477999999999999999987

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=91.10  E-value=0.087  Score=51.95  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=55.6

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccc--cCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc--
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY--FDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS--  271 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--  271 (401)
                      +.++.|..=..+ .-++|.|.+|+|||+|+..++++....+.  =+.++++-+++... +.+++.++...-.......  
T Consensus       141 r~ID~l~pigrG-Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~  219 (469)
T 2c61_A          141 STIDGTNTLVRG-QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFL  219 (469)
T ss_dssp             HHHHTTSCCBTT-CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred             EeeeeeeccccC-CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEE
Confidence            345555432212 23567899999999999999875443221  13566777777654 4556666654311110000  


Q ss_pred             cccCc-C-----HHHHHHHHHHHc---CCceEEEEEeCC
Q 015752          272 VIIGE-D-----YQLKKSILRDYL---TNKKYFIVLDDV  301 (401)
Q Consensus       272 ~~~~~-~-----~~~l~~~l~~~L---~~kr~LlVlDdv  301 (401)
                      ...+. .     .....-.+.+++   +|+.+||++||+
T Consensus       220 ~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl  258 (469)
T 2c61_A          220 NLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI  258 (469)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence            00011 1     111222333444   479999999996

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.08  E-value=0.11  Score=44.70  Aligned_cols=25  Identities=24%  Similarity=0.179  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3456789999999999999999864

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=91.08  E-value=0.16  Score=44.35  Aligned_cols=24  Identities=8%  Similarity=-0.114  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+|+|+|++|+||+|+|..+.+
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHH
Confidence            457999999999999999988765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.05  E-value=0.12  Score=43.85  Aligned_cols=24  Identities=13%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.04  E-value=0.11  Score=44.18  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      --|+|+|.+|+|||||...+.+.
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            45789999999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.04  E-value=0.11  Score=45.12  Aligned_cols=25  Identities=12%  Similarity=0.058  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.01  E-value=0.12  Score=44.29  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            446779999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.99  E-value=0.11  Score=44.95  Aligned_cols=25  Identities=16%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3456889999999999999988754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.95  E-value=0.11  Score=44.34  Aligned_cols=24  Identities=8%  Similarity=-0.053  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+...
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            355889999999999999999753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.90  E-value=0.12  Score=44.10  Aligned_cols=25  Identities=12%  Similarity=0.195  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhccc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      .--|+|+|.+|+|||||...+.+..
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            3467899999999999999998653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.88  E-value=0.11  Score=44.11  Aligned_cols=24  Identities=17%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+...
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            356789999999999999998763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=90.87  E-value=0.1  Score=48.61  Aligned_cols=21  Identities=10%  Similarity=0.365  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -|+|+|..|+|||||.+.++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999775

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.86  E-value=0.12  Score=44.37  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            456789999999999999998754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=90.84  E-value=0.13  Score=47.70  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ....|+|+|.+|+|||||...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3468999999999999999999764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=90.83  E-value=0.13  Score=43.66  Aligned_cols=24  Identities=8%  Similarity=0.166  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+...
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.82  E-value=0.13  Score=43.60  Aligned_cols=23  Identities=13%  Similarity=0.260  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999999764

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=90.81  E-value=0.2  Score=43.09  Aligned_cols=39  Identities=21%  Similarity=0.103  Sum_probs=25.5

Q ss_pred             eEEEEE-cCCCCchHHHHHHhhcccCcccccCeEEEEEcCCC
Q 015752          210 SVVAIL-DSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLD  250 (401)
Q Consensus       210 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~  250 (401)
                      ++|+|+ +-||+||||+|..+..  .....-..+.-+.....
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~   41 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQ   41 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCC
Confidence            578887 6699999999988876  22222224555555433

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.79  E-value=0.12  Score=44.06  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.++
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999999764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=90.79  E-value=0.11  Score=46.03  Aligned_cols=49  Identities=20%  Similarity=0.221  Sum_probs=30.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDI  260 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i  260 (401)
                      -.++.|.|.+|+|||++|.+++.+. ....-..+++++...  +...+.+.+
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~   78 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM   78 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence            3588899999999999998876421 122233566666544  344444443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.78  E-value=0.12  Score=43.91  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            345789999999999999998764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.77  E-value=0.13  Score=44.12  Aligned_cols=25  Identities=12%  Similarity=0.190  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3456789999999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=90.74  E-value=0.13  Score=45.16  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..-|+|+|.+|+|||||...+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            34588999999999999999874

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=90.71  E-value=0.12  Score=43.92  Aligned_cols=25  Identities=20%  Similarity=0.032  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhccc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      ..-|+|+|.+|+|||||...+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467899999999999999998654

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=90.68  E-value=0.19  Score=44.62  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |+|.|-||+||||+|..+..
T Consensus         3 I~vs~kGGvGKTt~a~~LA~   22 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIK   22 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHH
Confidence            66789999999999998876

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.67  E-value=0.13  Score=44.23  Aligned_cols=24  Identities=13%  Similarity=0.261  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=90.65  E-value=0.13  Score=44.81  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            456889999999999999999764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=90.59  E-value=0.2  Score=45.88  Aligned_cols=24  Identities=13%  Similarity=0.167  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...|+++|.+|+|||||...+...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            356899999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=90.56  E-value=0.25  Score=48.22  Aligned_cols=24  Identities=8%  Similarity=0.086  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-.+++|+|+.|+|||||.+.+..
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHh
Confidence            446899999999999999998865

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=90.55  E-value=0.16  Score=46.26  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...|+|+|.+|+|||||...+...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999998764

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=90.52  E-value=0.13  Score=45.24  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|.|+|.+|+|||+|...+.++
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            3668899999999999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.49  E-value=0.17  Score=43.60  Aligned_cols=24  Identities=8%  Similarity=0.288  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456789999999999999998754

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=90.48  E-value=0.26  Score=46.79  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++.+.|.||+||||+|..+..
T Consensus        16 ~~~~i~~~~gkGGvGKTt~a~~lA~   40 (348)
T 3io3_A           16 DSLKWIFVGGKGGVGKTTTSSSVAV   40 (348)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence            4568899999999999999987764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=90.47  E-value=0.11  Score=49.57  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=90.45  E-value=0.12  Score=43.43  Aligned_cols=24  Identities=21%  Similarity=0.034  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=90.42  E-value=0.24  Score=41.77  Aligned_cols=25  Identities=16%  Similarity=-0.049  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+..+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            3456889999999999999999653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.39  E-value=0.19  Score=43.30  Aligned_cols=24  Identities=17%  Similarity=0.216  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .--|+|+|.+|+|||||...+.++
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            345679999999999999888754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.38  E-value=0.14  Score=49.44  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.+..
T Consensus        48 e~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhC
Confidence            5899999999999999999875

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=90.37  E-value=0.17  Score=44.91  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            4567889999999999999999864

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=90.34  E-value=0.16  Score=51.62  Aligned_cols=25  Identities=12%  Similarity=-0.118  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +...+|.|.|++|+||||+|+.+..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~  418 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQV  418 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHH
Confidence            3457899999999999999999987

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=90.30  E-value=0.11  Score=52.53  Aligned_cols=23  Identities=17%  Similarity=0.023  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -.+++|+|+.|+|||||++.+..
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHH
Confidence            46899999999999999999987

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=90.26  E-value=0.15  Score=44.10  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345789999999999999998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.24  E-value=1  Score=50.40  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -..++|+|+.|+|||||++.+..
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~  466 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLR  466 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTT
T ss_pred             CcEEEEEecCCCcHHHHHHHhcc
Confidence            35899999999999999999975

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=90.24  E-value=0.15  Score=43.91  Aligned_cols=25  Identities=12%  Similarity=0.069  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhC
Confidence            3456889999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.21  E-value=0.14  Score=44.20  Aligned_cols=23  Identities=13%  Similarity=0.210  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            46789999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.20  E-value=0.14  Score=43.46  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+.+.
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999864

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=90.18  E-value=0.31  Score=45.99  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+++.+.|-||+||||+|..++.
T Consensus        15 ~~~i~~~sgkGGvGKTt~a~~lA~   38 (334)
T 3iqw_A           15 SLRWIFVGGKGGVGKTTTSCSLAI   38 (334)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHH
Confidence            457888899999999999988764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=90.17  E-value=0.17  Score=47.22  Aligned_cols=26  Identities=15%  Similarity=0.220  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .....|+|+|.+|+|||||...+...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45678999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.17  E-value=0.15  Score=43.72  Aligned_cols=23  Identities=17%  Similarity=0.223  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .-|+|+|.+|+|||||...+..+
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999998764

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=90.16  E-value=0.34  Score=48.81  Aligned_cols=50  Identities=14%  Similarity=0.034  Sum_probs=35.8

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCC
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDY  251 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~  251 (401)
                      +.++.|..-. +-.-++|.|..|+|||+|+..+.+..    +-+.++++-+++..
T Consensus       221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~  270 (600)
T 3vr4_A          221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERG  270 (600)
T ss_dssp             HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred             hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence            4566665422 22467899999999999999998732    23567888888764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.14  E-value=0.096  Score=44.01  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=10.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..-|+|+|.+|+|||||...+.++
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEECCCCC------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999988754

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=90.00  E-value=0.26  Score=50.86  Aligned_cols=48  Identities=13%  Similarity=0.111  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCchHH-HHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          211 VVAILDSGGFDKTA-FAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       211 vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      +..|+||||.|||+ ++..+++  .++.  ...+.++...+..+..++..+..
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv~a~TN~AvD~i~erL~~  255 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLCCAPSNIAVDNLVERLAL  255 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence            67799999999996 5555544  2222  23566776666566666666543

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=89.99  E-value=0.15  Score=48.39  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+++|+|..|+|||||.+.+.+.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            58899999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	401
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	1e-13

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 68.3 bits (166), Expect = 1e-13
 Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 28/206 (13%)

Query: 176 IHLLSEGQPRLDISHFERGRE--ELFDLLIEGSSG-LSVVAILDSGGFDKTAFAADTYNN 232
             LL    P+  ++ + R      +   L E        + +    G  K+  A+   + 
Sbjct: 9   RKLLLGNVPK-QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 67

Query: 233 NH--VKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV------SVIIGEDYQLKKSI 284
           +   +   +D   W++ S               ++  S        SV       LK+ I
Sbjct: 68  SDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMI 127

Query: 285 LRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLASLEMENGEK 344
               +       V DDV  +  I           E   R  +T  D ++  +   +  E 
Sbjct: 128 CNALIDRPNTLFVFDDVVQEETIR-------WAQELRLRCLVTTRDVEISNAA-SQTCEF 179

Query: 345 IRLDSVLFGGPLIRLKHEAWQFFILH 370
           I + S+           E + F   +
Sbjct: 180 IEVTSL--------EIDECYDFLEAY 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.97
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.92
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.76
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.74
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.7
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.66
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.63
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.59
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.55
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.45
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.43
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.42
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.25
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.19
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.19
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.17
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.1
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.09
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.07
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.05
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.03
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.03
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.87
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.51
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.14
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.04
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.04
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.04
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.02
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.99
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.98
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.97
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.93
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.93
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.92
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.91
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.88
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.88
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.84
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.83
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.82
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.8
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.79
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.79
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.76
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.74
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.74
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.72
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.62
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.62
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.59
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.59
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.57
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.56
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.53
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.49
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.48
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.48
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.46
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.42
d1okkd2	207	GTPase domain of the signal recognition particle r	96.42
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.42
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.39
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.37
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.32
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.29
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.29
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.27
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.26
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.23
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.22
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.21
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.19
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.17
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.13
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.12
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.1
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.09
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.0
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.95
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.94
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.91
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.89
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.85
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.84
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.82
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.82
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.78
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.78
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.76
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.74
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.71
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.71
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.65
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.64
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.63
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.6
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.52
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.43
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.43
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.33
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.26
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.26
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.25
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.24
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.23
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.22
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.11
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.09
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.05
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.97
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.92
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.68
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.67
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.64
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.62
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.56
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.38
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.19
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.16
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.13
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.1
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.09
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.02
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.02
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.01
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.01
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.92
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.9
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.73
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.71
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.68
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.59
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.56
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.56
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.54
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.49
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.48
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.48
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.46
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.38
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.37
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.34
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.28
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.24
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.17
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.17
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.17
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	93.17
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.13
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.13
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.13
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.12
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.12
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.03
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.98
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.92
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.92
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.9
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.89
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.86
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.81
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.8
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.8
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	92.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.74
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.7
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.7
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.69
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.68
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.61
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.61
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.5
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.41
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.41
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.38
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.37
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.31
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.31
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.3
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.27
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.23
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.21
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.18
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.18
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.17
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.15
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.13
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.88
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.85
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.84
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.83
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.78
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.78
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.77
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.77
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.69
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.6
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.4
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.39
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.38
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.81
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.79
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.74
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.53
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	90.44
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.08
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	89.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.82
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.28
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	88.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	88.84
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	88.82
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	88.76
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	88.04
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	87.9
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.62
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	87.19
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	86.83
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.58
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	86.25
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	85.96
d1tuea_	205	Replication protein E1 helicase domain {Human papi	85.84
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	85.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.24
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	85.03
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	83.95
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	83.82
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	82.9
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.17
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	80.04

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.6e-31  Score=249.18  Aligned_cols=193  Identities=16%  Similarity=0.122  Sum_probs=150.4

Q ss_pred             CccccccccHHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhcccC--cccccCeEEEEEcCCCCCHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYNNNH--VKFYFDCHAWVRVSLDYDFRRILDDIIK  262 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~  262 (401)
                      +.++||+.++++|+++|.. .+....+|+|+||||+||||||+++|++..  .+.+|++++|+++++.++...+...+..
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~   99 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI   99 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred             CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHH
Confidence            6789999999999999975 455688999999999999999999998643  7788999999999998887666555543


Q ss_pred             ---HcCCCCCCc--cccCc-CHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          263 ---SVIPPSRVS--VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       263 ---~l~~~~~~~--~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                         .+.......  ..... ........+.+.+.++|+|+||||||+ ...|+.+..      .||+||||||++.++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~-~~~~~~~~~------~~srilvTTR~~~v~~~  172 (277)
T d2a5yb3         100 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETIRWAQE------LRLRCLVTTRDVEISNA  172 (277)
T ss_dssp             HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHHHHHHH------TTCEEEEEESBGGGGGG
T ss_pred             HHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhH-Hhhhhhhcc------cCceEEEEeehHHHHHh
Confidence               333322211  11222 445556678889999999999999999 888876543      37999999999999988


Q ss_pred             chhCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCCC
Q 015752          337 LEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYLF  400 (401)
Q Consensus       337 ~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l~  400 (401)
                      +  ....++ +|+      +|  +.+|||+||.++++..+.     .+..++++++|| +|+|.++
T Consensus       173 ~--~~~~~~~~l~------~L--~~~ea~~Lf~~~~~~~~~-----~~~~~~~~~~iv~~c~GlPL  223 (277)
T d2a5yb3         173 A--SQTCEFIEVT------SL--EIDECYDFLEAYGMPMPV-----GEKEEDVLNKTIELSSGNPA  223 (277)
T ss_dssp             C--CSCEEEEECC------CC--CHHHHHHHHHHTSCCCC-------CHHHHHHHHHHHHHTTCHH
T ss_pred             c--CCCCceEECC------CC--CHHHHHHHHHHHhCCccC-----chhhHHHHHHHHHHhCCCHH
Confidence            7  234355 999      99  999999999999875321     345689999999 9999764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.92  E-value=4.3e-08  Score=87.87  Aligned_cols=173  Identities=19%  Similarity=0.197  Sum_probs=110.5

Q ss_pred             CccccccccHHHHHHHHhc----CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccC-eEEEEEcCCCCCHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE----GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSLDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i  260 (401)
                      ..++||+.+++++.++|..    .......+.|+|++|+|||++|+.+++  .+...+. ..+|+...........+..+
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEI   93 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHH--HHhcccCCcEEEecchhhhhhhhhhhhh
Confidence            5689999999999998863    334567889999999999999999998  4444333 45677777778888888888


Q ss_pred             HHHcCCCCCCccccCcCHHHHHHHHHHHcC--CceEEEEEeCCCC-CchhHHHHHhhCCC----CCCCcEEEEecCChhH
Q 015752          261 IKSVIPPSRVSVIIGEDYQLKKSILRDYLT--NKKYFIVLDDVFD-DSEIWIDVEELLPD----DENGSRVFITVTDPDL  333 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~-~~~~~~~l~~~l~~----~~~gs~iivTTR~~~v  333 (401)
                      ....+.....   .......+...+.+.+.  ....++++|++++ .......+...+..    ......+|.++.....
T Consensus        94 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (276)
T d1fnna2          94 ARSLNIPFPR---RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV  170 (276)
T ss_dssp             HHHTTCCCCS---SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred             HHhhhhhhhh---hccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhh
Confidence            8887765321   11145555555555543  4567777888766 22222222222211    1223345555554433


Q ss_pred             Hhhch----h-CCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          334 LASLE----M-ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       334 ~~~~~----~-~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      .....    . .....+.+.      ++  +.++.++++.+++
T Consensus       171 ~~~~~~~~~~r~~~~~i~~~------~~--~~~e~~~il~~r~  205 (276)
T d1fnna2         171 LNNLDPSTRGIMGKYVIRFS------PY--TKDQIFDILLDRA  205 (276)
T ss_dssp             HHTSCHHHHHHHTTCEEECC------CC--BHHHHHHHHHHHH
T ss_pred             hhhcchhhhhhhcchhcccc------ch--hHHHHHHHHHHHH
Confidence            22110    0 023334788      99  9999999998865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.76  E-value=3.8e-09  Score=95.14  Aligned_cols=165  Identities=13%  Similarity=0.162  Sum_probs=90.3

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcC-----CCCCHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVS-----LDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-----~~~~~~~~~~~i  260 (401)
                      .+||||++++++|.+.      ..+++.|+|++|+|||+|++++.+  .....   ..|+...     .......+...+
T Consensus        12 ~~f~GR~~el~~l~~~------~~~~i~i~G~~G~GKTsLl~~~~~--~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~   80 (283)
T d2fnaa2          12 KDFFDREKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGIN--ELNLP---YIYLDLRKFEERNYISYKDFLLEL   80 (283)
T ss_dssp             GGSCCCHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHH--HHTCC---EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred             hhCCChHHHHHHHHhc------cCCEEEEEcCCCCcHHHHHHHHHH--HCCCC---eEEEEeccccccccccHHHHHHHH
Confidence            8999999999998763      235788999999999999999987  33322   3445432     122334444333


Q ss_pred             HHHcC--------------CCCCCc----------cccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-----CchhHHH
Q 015752          261 IKSVI--------------PPSRVS----------VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-----DSEIWID  310 (401)
Q Consensus       261 ~~~l~--------------~~~~~~----------~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-----~~~~~~~  310 (401)
                      .....              ......          ..... +...+.+.+. ...++++++|+|++..     ....+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~i~id~~~~~~~~~~~~~~~~  159 (283)
T d2fnaa2          81 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFE-QASKDNVIIVLDEAQELVKLRGVNLLPA  159 (283)
T ss_dssp             HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHH-HTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred             HHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHH-hhcccccccccchhhhhcccchHHHHHH
Confidence            33221              000000          00001 3334443332 2357889999998743     0222233


Q ss_pred             HHhhCCCCCCCcEEEEecCChhHHhhc-hh--------CCCcc-eecccccCCCCCCCChHHHHHHHHHhh
Q 015752          311 VEELLPDDENGSRVFITVTDPDLLASL-EM--------ENGEK-IRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       311 l~~~l~~~~~gs~iivTTR~~~v~~~~-~~--------~~~~~-~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      +...... ......+++.+........ ..        +.... +.|+      ||  +.+++.+++.+.+
T Consensus       160 l~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~------~l--~~~e~~~~l~~~~  221 (283)
T d2fnaa2         160 LAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELK------PF--SREEAIEFLRRGF  221 (283)
T ss_dssp             HHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEEC------CC--CHHHHHHHHHHHH
T ss_pred             HHHHHHh-hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeC------CC--CHHHHHHHHHhhh
Confidence            3333222 2344555555554433222 00        01123 3888      99  9999999998865

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.7e-08  Score=88.80  Aligned_cols=178  Identities=12%  Similarity=0.074  Sum_probs=102.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.++.++.|.+|+..+.  ...+.++|++|+||||+|+.+++..........+.-.+.+...+.......+.....
T Consensus        14 ~divg~~~~~~~L~~~i~~~~--~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   91 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS   91 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhccc
Confidence            789999999999999997643  334669999999999999999873211111112222333333332222111111110


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCCCc
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMENGE  343 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~~~  343 (401)
                      ..                   ....+++-.+|+|++.. ....-..+...+......+.++++|.... +..... ....
T Consensus        92 ~~-------------------~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~-sr~~  151 (227)
T d1sxjc2          92 TR-------------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL-SQCT  151 (227)
T ss_dssp             BC-------------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-TTSE
T ss_pred             cc-------------------cccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHH-HHHh
Confidence            00                   01123455888999976 44444556665555556778877776643 222221 1223


Q ss_pred             ceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          344 KIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       344 ~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      .+.+.      ++  +.++-...+.+.+..   ++....   .+....|+ .|.|.+
T Consensus       152 ~i~~~------~~--~~~~i~~~l~~I~~~---e~i~i~---~~~l~~i~~~s~Gd~  194 (227)
T d1sxjc2         152 RFRFQ------PL--PQEAIERRIANVLVH---EKLKLS---PNAEKALIELSNGDM  194 (227)
T ss_dssp             EEECC------CC--CHHHHHHHHHHHHHT---TTCCBC---HHHHHHHHHHHTTCH
T ss_pred             hhccc------cc--ccccccccccccccc---ccccCC---HHHHHHHHHHcCCcH
Confidence            33888      99  999999999887742   111111   34456677 777654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.8e-08  Score=89.06  Aligned_cols=189  Identities=10%  Similarity=0.015  Sum_probs=106.5

Q ss_pred             CCccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-ccCeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          185 RLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFDCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      +.+++|.+...+.|..|+..+  ....+.++|++|+||||+|+.+++...... .......++.+.......+...+-..
T Consensus        11 ~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (237)
T d1sxjd2          11 LDEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF   88 (237)
T ss_dssp             TTTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHH
Confidence            378999999999999998653  334477999999999999999987321111 12234445555554544333222221


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhCC
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEMEN  341 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~~  341 (401)
                      ......    .. ..    ..+.....++.-++|+|++.. ....+..+...+......+.+|+||.... +...... .
T Consensus        89 ~~~~~~----~~-~~----~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~s-r  158 (237)
T d1sxjd2          89 ARLTVS----KP-SK----HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS-Q  158 (237)
T ss_dssp             HHSCCC----CC-CT----THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-H
T ss_pred             hhhhhh----hh-hH----HHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccc-h
Confidence            111100    00 00    112223334455789999876 44555555554444445667777665532 2222210 1


Q ss_pred             CcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          342 GEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       342 ~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      ...+++.      ++  +.++...++.+.+.....  ...    .+....|+ .|.|.+
T Consensus       159 ~~~i~f~------~~--~~~~~~~~L~~i~~~e~i--~i~----~~~l~~ia~~s~gd~  203 (237)
T d1sxjd2         159 CSKFRFK------AL--DASNAIDRLRFISEQENV--KCD----DGVLERILDISAGDL  203 (237)
T ss_dssp             SEEEECC------CC--CHHHHHHHHHHHHHTTTC--CCC----HHHHHHHHHHTSSCH
T ss_pred             hhhhccc------cc--cccccchhhhhhhhhhcC--cCC----HHHHHHHHHHcCCCH
Confidence            1233888      99  999999999988743211  112    34456666 676654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=2.4e-08  Score=87.75  Aligned_cols=177  Identities=12%  Similarity=0.069  Sum_probs=103.6

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccccc--CeEEEEEcCCCCCHHHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSLDYDFRRILDDIIKS  263 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~  263 (401)
                      .+++|-+..+++|.+|+..+.  ..-+.++|++|+||||+|+.+++  .+...+  ..+.-++.+.......+...+...
T Consensus        15 ~d~ig~~~~~~~L~~~~~~~~--~~~~ll~Gp~G~GKTt~a~~la~--~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~   90 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDVVRNQIKHF   90 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHHHHTHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHcCC--CCeEEEECCCCCCchhhHHHHHH--HHhccccccccccccccccCCceehhhHHHHH
Confidence            789999999999999997643  34467899999999999998887  332221  123334444444433332222211


Q ss_pred             cCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchhCC
Q 015752          264 VIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEMEN  341 (401)
Q Consensus       264 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~  341 (401)
                      ......                  ...++.-++|+|++.. .......+...+......+++++||.+. .+..... ..
T Consensus        91 ~~~~~~------------------~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~-sr  151 (224)
T d1sxjb2          91 AQKKLH------------------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ-SQ  151 (224)
T ss_dssp             HHBCCC------------------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH-TT
T ss_pred             HHhhcc------------------CCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHH-HH
Confidence            111100                  0123556888999876 4444444544444444566666666554 3322221 12


Q ss_pred             CcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          342 GEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       342 ~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      ...+++.      ++  +.++-...+.+.+..   ++....   .+....|+ .|+|.+
T Consensus       152 ~~~i~~~------~~--~~~~i~~~l~~i~~~---e~~~i~---~~~l~~I~~~s~Gd~  196 (224)
T d1sxjb2         152 CAILRYS------KL--SDEDVLKRLLQIIKL---EDVKYT---NDGLEAIIFTAEGDM  196 (224)
T ss_dssp             SEEEECC------CC--CHHHHHHHHHHHHHH---HTCCBC---HHHHHHHHHHHTTCH
T ss_pred             HHHhhhc------cc--chhhhHHHHHHHHHh---cccCCC---HHHHHHHHHHcCCcH
Confidence            2333888      99  999999999887732   111111   34457778 888764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.2e-07  Score=82.37  Aligned_cols=190  Identities=12%  Similarity=0.035  Sum_probs=101.9

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .+++|.+..++.|..++..+. -...+.|+|++|+||||+|+.+++.........      . ...........+...-.
T Consensus        12 ~dlig~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~------~-~~~~~~~~~~~i~~~~~   83 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT------A-TPCGVCDNCREIEQGRF   83 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSC------S-SCCSCSHHHHHHHHTCC
T ss_pred             HHccChHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCccccc------c-CccccchHHHHHHcCCC
Confidence            789999999999999997642 244577999999999999998865211111000      0 00011111111111110


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhc
Q 015752          266 PPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASL  337 (401)
Q Consensus       266 ~~~~~~~~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~  337 (401)
                      ....+...... ..+.+.. +.+.+     .++.-++|||++.. +...-..|...+-....++++|+||.+.. +....
T Consensus        84 ~~~~~~~~~~~~~i~~ir~-~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i  162 (239)
T d1njfa_          84 VDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI  162 (239)
T ss_dssp             TTEEEEETTCSSSHHHHHH-HHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred             CeEEEecchhcCCHHHHHH-HHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhH
Confidence            00000000001 2222222 22222     24566899999977 55555667766655556677777776643 32222


Q ss_pred             hhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          338 EMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       338 ~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      .. ....+.+.      ++  +.++-...+...+..   ++..-.   .+....|+ .|+|.+
T Consensus       163 ~S-Rc~~i~~~------~~--~~~~i~~~l~~i~~~---e~~~~~---~~~l~~i~~~s~Gd~  210 (239)
T d1njfa_         163 LS-RCLQFHLK------AL--DVEQIRHQLEHILNE---EHIAHE---PRALQLLARAAEGSL  210 (239)
T ss_dssp             HT-TSEEEECC------CC--CHHHHHHHHHHHHHH---HTCCBC---HHHHHHHHHHTTTCH
T ss_pred             hh-hhcccccc------cC--cHHHhhhHHHHHHhh---hccCCC---HHHHHHHHHHcCCCH
Confidence            11 11233888      99  999998888887632   111111   23445666 777754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.59  E-value=3.5e-08  Score=87.00  Aligned_cols=178  Identities=12%  Similarity=0.069  Sum_probs=101.1

Q ss_pred             CCCccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCccc-ccC-eEEEEEcCCCCCHHHHHHHHH
Q 015752          184 PRLDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFD-CHAWVRVSLDYDFRRILDDII  261 (401)
Q Consensus       184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~  261 (401)
                      .+.+++|-++..+.|..|+..+  ..+-+.++|++|+||||+|+.+++  .+.. .+. ..+-++.+...+...+ ....
T Consensus        22 ~~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKTtla~~iak--~l~~~~~~~~~~e~n~s~~~~~~~~-~~~~   96 (231)
T d1iqpa2          22 RLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGINVI-REKV   96 (231)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHHTT-HHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHH--HHHhcccCCCeeEEecCcccchhHH-HHHH
Confidence            3488999999999999999764  345577999999999999999987  3221 122 1222333221111111 1111


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-hHHhhchh
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDP-DLLASLEM  339 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~  339 (401)
                      ......                  ......++.++++|++.. ....+..+...+........+|.||... .+..... 
T Consensus        97 ~~~~~~------------------~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~-  157 (231)
T d1iqpa2          97 KEFART------------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-  157 (231)
T ss_dssp             HHHHHS------------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred             HHHHhh------------------hhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHh-
Confidence            110000                  001124677899999866 4566666666655444455666655543 3322221 


Q ss_pred             CCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCCCC
Q 015752          340 ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWSYL  399 (401)
Q Consensus       340 ~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~~l  399 (401)
                      .....+.+.      +.  +.++....+...+......  ..    .+....|+ .|+|.+
T Consensus       158 sR~~~i~~~------~~--~~~~~~~~l~~~~~~e~i~--i~----~~~l~~I~~~~~gdi  204 (231)
T d1iqpa2         158 SRCAIFRFR------PL--RDEDIAKRLRYIAENEGLE--LT----EEGLQAILYIAEGDM  204 (231)
T ss_dssp             HTEEEEECC------CC--CHHHHHHHHHHHHHTTTCE--EC----HHHHHHHHHHHTTCH
T ss_pred             Ccccccccc------cc--chhhHHHHHHHHHHHhCCC--CC----HHHHHHHHHHcCCCH
Confidence            011233888      88  9999999998887532111  12    33446677 777653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=5.7e-08  Score=86.51  Aligned_cols=189  Identities=12%  Similarity=0.116  Sum_probs=94.7

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc----CcccccCeEEEEEcCCC-----------
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN----HVKFYFDCHAWVRVSLD-----------  250 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~vs~~-----------  250 (401)
                      .+++|.++..+.|..++.... ...-+.|+|++|+||||+|+.+++..    .....++...|...+..           
T Consensus        11 ~diig~~~~~~~L~~~~~~~~-~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (252)
T d1sxje2          11 NALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY   89 (252)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred             HHccCcHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhccCCc
Confidence            789999888888887775432 33446699999999999999987732    11112222222211110           


Q ss_pred             ----------CCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCC
Q 015752          251 ----------YDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDE  319 (401)
Q Consensus       251 ----------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~  319 (401)
                                ...................    ..      ...-.....++.-++|||++.. ....+..+...+....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~  159 (252)
T d1sxje2          90 HLEITPSDMGNNDRIVIQELLKEVAQMEQ----VD------FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS  159 (252)
T ss_dssp             EEEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred             cceeeecccccCCcceeeehhhhhhhhhh----hh------hhhcccccCCCceEEEeccccccccccchhhhccccccc
Confidence                      0011111111111111100    00      0000011123445889999977 5566666665555445


Q ss_pred             CCcEEEEecCChh-HHhhchhCCCcceecccccCCCCCCCChHHHHHHHHHhhCCCCCcCcccchHHHHHHHHHh-ccCC
Q 015752          320 NGSRVFITVTDPD-LLASLEMENGEKIRLDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAFRQLGDKFV-LCWS  397 (401)
Q Consensus       320 ~gs~iivTTR~~~-v~~~~~~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~i~~~i~-~C~~  397 (401)
                      ..+++|+||.+.+ +...... ....+++.      ++  +.++..+.+...+..   ++....+  +++...|+ .|.|
T Consensus       160 ~~~~~Il~tn~~~~i~~~l~s-R~~~i~~~------~~--~~~~~~~~l~~i~~~---e~~~~~~--~~~l~~i~~~s~G  225 (252)
T d1sxje2         160 KNIRLIMVCDSMSPIIAPIKS-QCLLIRCP------AP--SDSEISTILSDVVTN---ERIQLET--KDILKRIAQASNG  225 (252)
T ss_dssp             TTEEEEEEESCSCSSCHHHHT-TSEEEECC------CC--CHHHHHHHHHHHHHH---HTCEECC--SHHHHHHHHHHTT
T ss_pred             ccccceeeeccccchhhhhhc-chheeeec------cc--chhhHHHHHHHHHHH---cCCCCCc--HHHHHHHHHHcCC
Confidence            5677777776542 2111111 12334888      99  999999999877631   1111111  23445667 6776


Q ss_pred             CC
Q 015752          398 YL  399 (401)
Q Consensus       398 ~l  399 (401)
                      .+
T Consensus       226 d~  227 (252)
T d1sxje2         226 NL  227 (252)
T ss_dssp             CH
T ss_pred             cH
Confidence            54

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.45  E-value=8.5e-07  Score=79.53  Aligned_cols=175  Identities=18%  Similarity=0.148  Sum_probs=104.8

Q ss_pred             CccccccccHHHHHHHHhc----CC--CC-ceEEEEEcCCCCchHHHHHHhhcccCc----ccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE----GS--SG-LSVVAILDSGGFDKTAFAADTYNNNHV----KFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~----~~--~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~  254 (401)
                      ..++||+.++++|.+.+..    +.  .. ..++.|+|++|+|||++++.+++...-    ........+++........
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   95 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY   95 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchh
Confidence            6799999999999887742    21  11 234567899999999999999873210    1111356677777777888


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHc--CCceEEEEEeCCCC-C------chh---HHHHHhhCCCC---C
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-D------SEI---WIDVEELLPDD---E  319 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~-~------~~~---~~~l~~~l~~~---~  319 (401)
                      ..+..+...+......   ...........+.+..  .+...++++|.+.. +      .+.   +..+...+...   .
T Consensus        96 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~  172 (287)
T d1w5sa2          96 TILSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN  172 (287)
T ss_dssp             HHHHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred             hHHHHHhhhccccccc---ccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhccc
Confidence            8888888887765321   1115555555565555  35677788887743 0      111   22233333321   2


Q ss_pred             CCcEEEEecCChhHHhhc----h-hCC-CcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          320 NGSRVFITVTDPDLLASL----E-MEN-GEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       320 ~gs~iivTTR~~~v~~~~----~-~~~-~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      .-..|++++.........    . ... ...+.++      ++  +.++..+++..++
T Consensus       173 ~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~------~y--~~~el~~Il~~r~  222 (287)
T d1w5sa2         173 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP------AY--KSRELYTILEQRA  222 (287)
T ss_dssp             BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECC------CC--CHHHHHHHHHHHH
T ss_pred             ceeEEeecccHHHHHHHHhhccchhcccceeeecc------CC--cHHHHHHHHhhhH
Confidence            223444555444322110    0 012 2233888      99  9999999999876

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.2e-06  Score=78.56  Aligned_cols=157  Identities=15%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc---cCcccc-cCeEEEE-EcCCCCCHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN---NHVKFY-FDCHAWV-RVSLDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~~~~-F~~~~wv-~vs~~~~~~~~~~~i  260 (401)
                      ..++||++++++++..|.....  .-+.++|.+|+|||+|+..++..   ..+... ....+|. +++.-          
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k--~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~l----------   85 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------   85 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred             CcccChHHHHHHHHHHHhcCcc--CCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechH----------
Confidence            4579999999999999976432  34458999999999988887752   122222 2345554 22110          


Q ss_pred             HHHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC--C-------chhHHHHHhhCCCCCCCcEEEEecCC
Q 015752          261 IKSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD--D-------SEIWIDVEELLPDDENGSRVFITVTD  330 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~--~-------~~~~~~l~~~l~~~~~gs~iivTTR~  330 (401)
                         +.+.     ....+++.....+.+.+ +.+..++++|++..  .       ..+...+..+... ...-++|.||..
T Consensus        86 ---iag~-----~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIgatT~  156 (268)
T d1r6bx2          86 ---LAGT-----KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY  156 (268)
T ss_dssp             ----CCC-----CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred             ---hccC-----ccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEeCCH
Confidence               0111     11115666666555555 45679999999865  1       1133444433322 235688888888


Q ss_pred             hhHHhhchh-----CCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          331 PDLLASLEM-----ENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       331 ~~v~~~~~~-----~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ++.......     .....+.++      ++  +.+++..++....
T Consensus       157 eey~~~~e~d~al~rrF~~I~V~------Ep--s~e~t~~IL~~~~  194 (268)
T d1r6bx2         157 QEFSNIFEKDRALARRFQKIDIT------EP--SIEETVQIINGLK  194 (268)
T ss_dssp             HHHHCCCCCTTSSGGGEEEEECC------CC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHhhhcccccC------CC--CHHHHHHHHHHhh
Confidence            877665421     123344888      89  9999999998654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=2.4e-07  Score=82.36  Aligned_cols=164  Identities=11%  Similarity=0.009  Sum_probs=91.5

Q ss_pred             CCccccccccHHHHHHHHhc---------------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC
Q 015752          185 RLDISHFERGREELFDLLIE---------------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL  249 (401)
Q Consensus       185 ~~~~vGr~~~~~~l~~~L~~---------------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~  249 (401)
                      +.+++|.+..+++|.+||..               +....+.+.++|++|+||||+|+.+++.  ..   -...+++.+.
T Consensus        13 ~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~--~~---~~~~~~~~~~   87 (253)
T d1sxja2          13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG---YDILEQNASD   87 (253)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT---CEEEEECTTS
T ss_pred             HHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHH--HH---hhhhcccccc
Confidence            38899999999999999853               1233467889999999999999999983  21   2345666665


Q ss_pred             CCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEE
Q 015752          250 DYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----DSEIWIDVEELLPDDENGSRVF  325 (401)
Q Consensus       250 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~ii  325 (401)
                      ..+...+ .................. .     ........++..++++|++..    ....+..+........ ...++
T Consensus        88 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~-~~ii~  159 (253)
T d1sxja2          88 VRSKTLL-NAGVKNALDNMSVVGYFK-H-----NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTS-TPLIL  159 (253)
T ss_dssp             CCCHHHH-HHTGGGGTTBCCSTTTTT-C---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCS-SCEEE
T ss_pred             chhhHHH-HHHHHHHhhcchhhhhhh-h-----hhhcccccccceEEEeeeccccccchhhhhHHHhhhhcccc-ccccc
Confidence            5554433 222222222111000000 0     001112345778899999754    1333455544322222 22333


Q ss_pred             Eec-CChhHHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          326 ITV-TDPDLLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       326 vTT-R~~~v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      +++ .........  ...... .+.      ++  +.++-...+...+
T Consensus       160 i~~~~~~~~~~~l--~~~~~~i~f~------~~--~~~~i~~~l~~i~  197 (253)
T d1sxja2         160 ICNERNLPKMRPF--DRVCLDIQFR------RP--DANSIKSRLMTIA  197 (253)
T ss_dssp             EESCTTSSTTGGG--TTTSEEEECC------CC--CHHHHHHHHHHHH
T ss_pred             ccccccccccccc--cceeeeeecc------cc--chhHHHHHHHHHH
Confidence            333 222222222  133334 888      88  9999888888776

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=4.1e-06  Score=73.54  Aligned_cols=46  Identities=20%  Similarity=0.084  Sum_probs=38.1

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|-+..+++|..|+..   .....+-+.++|++|+||||+|+.+++
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHh
Confidence            7899999999999988853   123345577999999999999999987

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.2e-05  Score=69.21  Aligned_cols=162  Identities=13%  Similarity=0.051  Sum_probs=87.5

Q ss_pred             cccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCc
Q 015752          192 ERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVS  271 (401)
Q Consensus       192 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~  271 (401)
                      +...+++.+.+..+. -...+.++|++|+||||+|+.+++...-.....       ........-...+...........
T Consensus         8 ~~~~~~l~~~~~~~~-l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~   79 (207)
T d1a5ta2           8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-------HKSCGHCRGCQLMQAGTHPDYYTL   79 (207)
T ss_dssp             HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-------TBCCSCSHHHHHHHHTCCTTEEEE
T ss_pred             HHHHHHHHHHHHcCC-cCeEEEEECCCCCcHHHHHHHHHHhcccccccc-------cccccccchhhhhhhccccccchh
Confidence            344667777666432 344688999999999999998765211000000       000000000111111110000000


Q ss_pred             --c-ccCc-CHHHHHHHHHHHc-----CCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhchhC
Q 015752          272 --V-IIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASLEME  340 (401)
Q Consensus       272 --~-~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~~~~  340 (401)
                        . .... ..+++.. +.+.+     .+++-++|+|++.. ..+....|+..+-....++.+|+||++.+ +...+.. 
T Consensus        80 ~~~~~~~~i~~~~ir~-l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~S-  157 (207)
T d1a5ta2          80 APEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS-  157 (207)
T ss_dssp             CCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred             hhhhcccccccchhhH-HhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcc-
Confidence              0 0011 2233222 22222     24677999999977 67778888888877777888888777754 4333311 


Q ss_pred             CCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          341 NGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       341 ~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      ....+.+.      ++  +.++....+.+..
T Consensus       158 Rc~~i~~~------~~--~~~~~~~~L~~~~  180 (207)
T d1a5ta2         158 RCRLHYLA------PP--PEQYAVTWLSREV  180 (207)
T ss_dssp             TSEEEECC------CC--CHHHHHHHHHHHC
T ss_pred             eeEEEecC------CC--CHHHHHHHHHHcC
Confidence            12333888      99  9999998887655

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=1e-05  Score=72.19  Aligned_cols=156  Identities=12%  Similarity=0.157  Sum_probs=88.5

Q ss_pred             CccccccccHHHHHHHHh----c-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLI----E-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~----~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .+++|.++.+++|.+.+.    .       +-...+-+.++|++|+|||++|+.+++  ....+|   +.++.+      
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~--~~~~~~---~~i~~~------   72 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------   72 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHH--HTTCEE---EEECHH------
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHH--HhCCeE---EEEEch------
Confidence            578999999988888642    1       122345688999999999999999988  332222   222111      


Q ss_pred             HHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-C-------chhH----HHHHhhCC--CCC
Q 015752          255 RILDDIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-D-------SEIW----IDVEELLP--DDE  319 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-------~~~~----~~l~~~l~--~~~  319 (401)
                      .        +...      ... ....+...+...-..++++|+|||+.. -       .+..    ..+...+.  ...
T Consensus        73 ~--------l~~~------~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  138 (258)
T d1e32a2          73 E--------IMSK------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR  138 (258)
T ss_dssp             H--------HTTS------CTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCS
T ss_pred             h--------hccc------ccccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhcccccccccc
Confidence            1        1111      011 233333333333356889999999965 1       1111    12222111  223


Q ss_pred             CCcEEEEecCChhHHhh-ch-hCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752          320 NGSRVFITVTDPDLLAS-LE-MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (401)
Q Consensus       320 ~gs~iivTTR~~~v~~~-~~-~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~  374 (401)
                      .+.-||.||....-... .. .+..++. .++      +.  +.++...+|.......
T Consensus       139 ~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~------~P--~~~~R~~il~~~l~~~  188 (258)
T d1e32a2         139 AHVIVMAATNRPNSIDPALRRFGRFDREVDIG------IP--DATGRLEILQIHTKNM  188 (258)
T ss_dssp             SCEEEEEEESCGGGSCGGGTSTTSSCEEEECC------CC--CHHHHHHHHHHTTTTS
T ss_pred             CCccEEEeCCCccccchhhhhcccccceeECC------CC--CHHHHHHHhhhhccCc
Confidence            34455668877654222 21 1124445 788      77  9999999998887543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=2.1e-05  Score=69.59  Aligned_cols=157  Identities=13%  Similarity=0.165  Sum_probs=85.5

Q ss_pred             CccccccccHHHHHHHH---hc-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLL---IE-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L---~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.++.+++|.+.+   ..       +-...+-+.++|++|+|||+||+.+++  ....+   .+-++.      ..
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~--~~~~~---~~~i~~------~~   77 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVP---FITASG------SD   77 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH--HTTCC---EEEEEH------HH
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHH--HcCCC---EEEEEh------HH
Confidence            78999888877665533   21       122345688999999999999999998  33222   222222      11


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC---C--------ch----hHHHHHhhCCC--C
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---D--------SE----IWIDVEELLPD--D  318 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~--------~~----~~~~l~~~l~~--~  318 (401)
                          ++....         ......+...+...-+..+++|+|||+..   +        ..    ....+...+..  .
T Consensus        78 ----l~~~~~---------g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~  144 (247)
T d1ixza_          78 ----FVEMFV---------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK  144 (247)
T ss_dssp             ----HHHSCT---------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred             ----hhhccc---------cHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence                111111         10233333333333356789999999842   0        00    12233322221  1


Q ss_pred             CCCcEEEEecCChhHH-hhch-hCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752          319 ENGSRVFITVTDPDLL-ASLE-MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (401)
Q Consensus       319 ~~gs~iivTTR~~~v~-~~~~-~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~  374 (401)
                      ..+.-||-||....-. ..+. .+..++. .++      +.  +.++..++|.......
T Consensus       145 ~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~------~P--~~~eR~~il~~~l~~~  195 (247)
T d1ixza_         145 DTAIVVMAATNRPDILDPALLRPGRFDRQIAID------AP--DVKGREQILRIHARGK  195 (247)
T ss_dssp             TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECC------SC--CHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEeCCCccccCHhHcCCCCCcEEEEEC------Cc--CHHHHHHHHHHHhccc
Confidence            2232333366654422 2221 0133444 888      88  9999999999888543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.5e-05  Score=70.99  Aligned_cols=157  Identities=16%  Similarity=0.152  Sum_probs=88.5

Q ss_pred             CccccccccHHHHHHHH---hc-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHH
Q 015752          186 LDISHFERGREELFDLL---IE-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L---~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      .+++|.++.+++|.+.+   ..       +....+.+.++|++|+|||+||+.+++  ....+|   +-++.+.-.+   
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~--~~~~~~---~~i~~~~l~~---   83 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSDFVE---   83 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCCE---EEECSCSSTT---
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHH--HcCCCE---EEEEhHHhhh---
Confidence            78999988887776543   22       122356688999999999999999997  332221   2222222111   


Q ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC---C--------chh----HHHHHhhCCC--C
Q 015752          256 ILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---D--------SEI----WIDVEELLPD--D  318 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~--------~~~----~~~l~~~l~~--~  318 (401)
                             ..         .......+...+...-+..+++|+|||+..   +        ...    +..+...+..  .
T Consensus        84 -------~~---------~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~  147 (256)
T d1lv7a_          84 -------MF---------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG  147 (256)
T ss_dssp             -------SC---------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred             -------cc---------hhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence                   00         011344444444444456789999999842   0        011    2233333321  2


Q ss_pred             CCCcEEEEecCChhHH-hhch-hCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCCC
Q 015752          319 ENGSRVFITVTDPDLL-ASLE-MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (401)
Q Consensus       319 ~~gs~iivTTR~~~v~-~~~~-~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~~  374 (401)
                      ..+--||.||..+... ..+. .+..++. .++      +.  +.++-.++|.......
T Consensus       148 ~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~------~P--~~~~R~~il~~~l~~~  198 (256)
T d1lv7a_         148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG------LP--DVRGREQILKVHMRRV  198 (256)
T ss_dssp             SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECC------CC--CHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEeCCCcccCCHhHcCCCCCCEEEECC------Cc--CHHHHHHHHHHhccCC
Confidence            2344455577765432 2221 1123444 888      88  9999999998887543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=4.9e-06  Score=70.60  Aligned_cols=152  Identities=9%  Similarity=0.043  Sum_probs=86.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc---cCc-ccccCeEEEEEcCCCCCHHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN---NHV-KFYFDCHAWVRVSLDYDFRRILDDII  261 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~  261 (401)
                      ..++||+++++++...|.....  .-+.++|.+|+|||+|+..++..   .++ ..--+..+|.-     +...++    
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k--~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~~Li----   90 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMGALV----   90 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHHHHH----
T ss_pred             CCCcCcHHHHHHHHHHHhccCC--CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe-----eHHHHh----
Confidence            4579999999999999986432  23568999999999998777752   122 12223455531     222211    


Q ss_pred             HHcCCCCCCccccCcCHHHHHHHHHHHc-C-CceEEEEEeCCCC--C-------chhHHHHHhhCCCCCCCcEEEEecCC
Q 015752          262 KSVIPPSRVSVIIGEDYQLKKSILRDYL-T-NKKYFIVLDDVFD--D-------SEIWIDVEELLPDDENGSRVFITVTD  330 (401)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~-~kr~LlVlDdv~~--~-------~~~~~~l~~~l~~~~~gs~iivTTR~  330 (401)
                         .+.     ....++++....+.+.+ + ..+.+|++|++..  .       .+.-+-|..++..  ..-++|.||..
T Consensus        91 ---Ag~-----~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r--g~l~~IgatT~  160 (195)
T d1jbka_          91 ---AGA-----KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTL  160 (195)
T ss_dssp             ---TTT-----CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECH
T ss_pred             ---ccC-----CccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC--CCceEEecCCH
Confidence               111     00013444343333333 2 4579999999865  1       0122334444443  24678888877


Q ss_pred             hhHHhhch-----hCCCcceecccccCCCCCCCChHHHHHH
Q 015752          331 PDLLASLE-----MENGEKIRLDSVLFGGPLIRLKHEAWQF  366 (401)
Q Consensus       331 ~~v~~~~~-----~~~~~~~~l~~~~~~~~L~~~~~ea~~L  366 (401)
                      ++......     ......+.++      ..  +.+++..+
T Consensus       161 eey~~~~e~d~aL~rrF~~I~V~------Ep--~~e~t~~I  193 (195)
T d1jbka_         161 DEYRQYIEKDAALERRFQKVFVA------EP--SVEDTIAI  193 (195)
T ss_dssp             HHHHHHTTTCHHHHTTEEEEECC------CC--CHHHHHTT
T ss_pred             HHHHHHHHcCHHHHhcCCEeecC------CC--CHHHHHHH
Confidence            76655431     1123444777      77  87777654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.07  E-value=2.1e-05  Score=68.89  Aligned_cols=46  Identities=20%  Similarity=0.141  Sum_probs=37.8

Q ss_pred             CccccccccHHHHHHHHhc---CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE---GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++||-+..+++|..++..   .....+-+.++|++|+||||+|+.+++
T Consensus         9 ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2           9 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            7899999999998888753   223355677899999999999999987

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=1.7e-05  Score=74.74  Aligned_cols=156  Identities=7%  Similarity=0.009  Sum_probs=86.5

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc----ccCcccccCeEEEEE-cCCCCCHHHHHHHH
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN----NNHVKFYFDCHAWVR-VSLDYDFRRILDDI  260 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~----~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i  260 (401)
                      ..++||+.+++++++.|.....+.  +.++|.+|+|||+|+..++.    ..--..-.+.++|.- ++.-          
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~k~n--~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l----------   89 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRTKNN--PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL----------   89 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCCC--CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred             CCCcCcHHHHHHHHHHHhcCCCCC--CeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhh----------
Confidence            468999999999999998644332  24679999999998765554    211222234555542 2211          


Q ss_pred             HHHcCCCCCCccccCcCHHHHHHHHHHHc-CC-ceEEEEEeCCCC--C-------chhHHHHHhhCCCCCCCcEEEEecC
Q 015752          261 IKSVIPPSRVSVIIGEDYQLKKSILRDYL-TN-KKYFIVLDDVFD--D-------SEIWIDVEELLPDDENGSRVFITVT  329 (401)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~-kr~LlVlDdv~~--~-------~~~~~~l~~~l~~~~~gs~iivTTR  329 (401)
                      +...        .....++.....+...+ .. .+++|++|++..  .       .+.-+-|..+|..+  .-++|-||.
T Consensus        90 ~ag~--------~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg--~~~~I~~tT  159 (387)
T d1qvra2          90 LAGA--------KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT  159 (387)
T ss_dssp             ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred             hccc--------CcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCC--CcceeeecC
Confidence            0000        01114444444444434 33 479999999966  1       01112344444332  356777777


Q ss_pred             ChhHHhhch----hCCCcceecccccCCCCCCCChHHHHHHHHHhh
Q 015752          330 DPDLLASLE----MENGEKIRLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       330 ~~~v~~~~~----~~~~~~~~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      .++....-.    ......+.++      +.  +.+++..++....
T Consensus       160 ~~ey~~~e~d~al~rrF~~v~v~------ep--~~~~~~~il~~~~  197 (387)
T d1qvra2         160 LDEYREIEKDPALERRFQPVYVD------EP--TVEETISILRGLK  197 (387)
T ss_dssp             HHHHHHHTTCTTTCSCCCCEEEC------CC--CHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHhcccccCC------CC--cHHHHHHHHHHHH
Confidence            666543210    1234555888      88  9999999998765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.03  E-value=3e-06  Score=73.52  Aligned_cols=150  Identities=12%  Similarity=0.031  Sum_probs=83.5

Q ss_pred             cccccccH--HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          188 ISHFERGR--EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       188 ~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      ++|-....  ..+.++..........+.|+|++|+|||.|++.+++  ........+++++.      .++...+...+.
T Consensus        13 ~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~   84 (213)
T d1l8qa2          13 IVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSA------DDFAQAMVEHLK   84 (213)
T ss_dssp             CCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEH------HHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHH--HhccCccceEEech------HHHHHHHHHHHH
Confidence            45653332  233343333233334478999999999999999998  44444455666643      444445544443


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHH-hhCCC-CCCCcEEEEecCChh---------
Q 015752          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVE-ELLPD-DENGSRVFITVTDPD---------  332 (401)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~-~~l~~-~~~gs~iivTTR~~~---------  332 (401)
                      ..         .......    .+. .--+|+|||+..  ....|+... ..+.. ...|..||+||+...         
T Consensus        85 ~~---------~~~~~~~----~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~d  150 (213)
T d1l8qa2          85 KG---------TINEFRN----MYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDR  150 (213)
T ss_dssp             HT---------CHHHHHH----HHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHH
T ss_pred             cc---------chhhHHH----HHh-hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchH
Confidence            22         1222222    222 356899999965  245565432 22221 235778999998643         


Q ss_pred             HHhhchhCCCcce-ecccccCCCCCCCChHHHHHHHHHhh
Q 015752          333 LLASLEMENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHY  371 (401)
Q Consensus       333 v~~~~~~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a  371 (401)
                      +....   ....+ .++      |   ++++-.+++.+++
T Consensus       151 L~SRL---~~g~~~~i~------p---~d~~~~~iL~~~a  178 (213)
T d1l8qa2         151 LVSRF---EGGILVEIE------L---DNKTRFKIIKEKL  178 (213)
T ss_dssp             HHHHH---HTSEEEECC------C---CHHHHHHHHHHHH
T ss_pred             HHHHh---hCceEEEEC------C---CcHHHHHHHHHHH
Confidence            22323   22223 555      2   5567777888877

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=1.2e-05  Score=72.00  Aligned_cols=156  Identities=13%  Similarity=0.138  Sum_probs=88.5

Q ss_pred             CccccccccHHHHHHHHhc-----------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHH
Q 015752          186 LDISHFERGREELFDLLIE-----------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFR  254 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (401)
                      .+++|.++.+++|.+.+..           +-...+-|.++|++|.|||+||+.+++  ....+|     +.++    ..
T Consensus         7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~--~~~~~~-----~~~~----~~   75 (265)
T d1r7ra3           7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GP   75 (265)
T ss_dssp             SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHH--HTTCEE-----EEEC----HH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHH--HhCCcE-----EEEE----HH
Confidence            6788988887777766521           223356788999999999999999998  333222     1221    11


Q ss_pred             HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-C-------ch-------hHHHHHhhCCCC-
Q 015752          255 RILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-D-------SE-------IWIDVEELLPDD-  318 (401)
Q Consensus       255 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~-------~~-------~~~~l~~~l~~~-  318 (401)
                      .+    ..   ..      .......+...+...-...+++|+|||+.. -       ..       ....+...+... 
T Consensus        76 ~l----~~---~~------~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~  142 (265)
T d1r7ra3          76 EL----LT---MW------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS  142 (265)
T ss_dssp             HH----HT---SC------TTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred             Hh----hh---cc------ccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcC
Confidence            11    11   11      011233333334343446789999999863 1       00       123344445422 


Q ss_pred             -CCCcEEEEecCChhHH-hhch-hCCCcce-ecccccCCCCCCCChHHHHHHHHHhhCC
Q 015752          319 -ENGSRVFITVTDPDLL-ASLE-MENGEKI-RLDSVLFGGPLIRLKHEAWQFFILHYGS  373 (401)
Q Consensus       319 -~~gs~iivTTR~~~v~-~~~~-~~~~~~~-~l~~~~~~~~L~~~~~ea~~Lf~~~a~~  373 (401)
                       ..+--||.||....-. ..+. .+...+. +++      +.  +.++-.++|......
T Consensus       143 ~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~------~p--~~~~R~~il~~~l~~  193 (265)
T d1r7ra3         143 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP------LP--DEKSRVAILKANLRK  193 (265)
T ss_dssp             ---CCEEEECCBSCTTTSCGGGSSTTSEEEEECC------CC--CCHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEeCCCchhCCHHHhCCCCccEEEEec------ch--HHHHHHHHHHHHhcc
Confidence             2334556677665432 2221 1234455 888      88  999999999887754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.87  E-value=2.9e-05  Score=68.63  Aligned_cols=46  Identities=20%  Similarity=0.073  Sum_probs=35.2

Q ss_pred             CccccccccHHHHHHHHh-------c-CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLI-------E-GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~-------~-~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|..+.++.+++.+.       . .....+-|.++|++|+|||++|+.+++
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhh
Confidence            568888887776665554       1 223456788999999999999999998

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=0.00019  Score=60.91  Aligned_cols=119  Identities=8%  Similarity=-0.039  Sum_probs=70.3

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccC--cccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCCCCCc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNH--VKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPPSRVS  271 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~  271 (401)
                      ++-+..++..  .....+.++|.+|+|||++|..+.+...  ...|. -..++.... ...++.+ +++.+.+.....  
T Consensus         3 ~~~l~~~i~~--~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~-D~~~i~~~~~~I~Id~I-R~i~~~~~~~~~--   76 (198)
T d2gnoa2           3 LETLKRIIEK--SEGISILINGEDLSYPREVSLELPEYVEKFPPKAS-DVLEIDPEGENIGIDDI-RTIKDFLNYSPE--   76 (198)
T ss_dssp             HHHHHHHHHT--CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTT-TEEEECCSSSCBCHHHH-HHHHHHHTSCCS--
T ss_pred             HHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCC-CEEEEeCCcCCCCHHHH-HHHHHHHhhCcc--
Confidence            3444555543  3567888999999999999998876211  11222 234443221 2222222 233333332211  


Q ss_pred             cccCcCHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChh-HHhhc
Q 015752          272 VIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDDENGSRVFITVTDPD-LLASL  337 (401)
Q Consensus       272 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~  337 (401)
                                        .+++=++|+|++.. +.+++..|...+-+...++.+|++|.+.+ +....
T Consensus        77 ------------------~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI  126 (198)
T d2gnoa2          77 ------------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI  126 (198)
T ss_dssp             ------------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred             ------------------cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHH
Confidence                              24555899999987 77888888887776666788777666653 43333

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00028  Score=61.26  Aligned_cols=128  Identities=9%  Similarity=0.112  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccC------------c------c-------cccCeEEEEEcCCC------------CC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNH------------V------K-------FYFDCHAWVRVSLD------------YD  252 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~------------~------~-------~~F~~~~wv~vs~~------------~~  252 (401)
                      .+++|+|+.|+|||||.+.++.-.+            +      +       +.|...-+.++.+.            ..
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~  106 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV  106 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------CH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHH
Confidence            5899999999999999999853111            1      0       01111111111111            01


Q ss_pred             HHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEE
Q 015752          253 FRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFI  326 (401)
Q Consensus       253 ~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iiv  326 (401)
                      ..+-..++++.++..........+  .-+...-.+.+.|..++-+|++|.--.  |+..-..+...+..  ...|..||+
T Consensus       107 ~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~  186 (232)
T d2awna2         107 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY  186 (232)
T ss_dssp             HHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred             HHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            223345556665543221111111  112222334455556778999999866  54433333333322  134778899


Q ss_pred             ecCChhHHhhc
Q 015752          327 TVTDPDLLASL  337 (401)
Q Consensus       327 TTR~~~v~~~~  337 (401)
                      +|.+.+.+..+
T Consensus       187 vTHd~~~a~~~  197 (232)
T d2awna2         187 VTHDQVEAMTL  197 (232)
T ss_dssp             EESCHHHHHHH
T ss_pred             EeCCHHHHHHh
Confidence            99988776665

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=0.00011  Score=60.60  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++.|+|.|++|+||||||+.+.+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999987

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.04  E-value=0.0003  Score=58.66  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=27.7

Q ss_pred             HHHHHHHHhc-CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          195 REELFDLLIE-GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       195 ~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++.|.+.... ...+.-+|+|.|.+|+||||||+.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_           7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3444444433 345677999999999999999999976

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.04  E-value=0.0014  Score=57.30  Aligned_cols=45  Identities=16%  Similarity=0.083  Sum_probs=35.0

Q ss_pred             ccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          187 DISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       187 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +|||....++++.+.+..-...-.-|.|.|..|+|||++|+.+.+
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            478988889888888865222223467899999999999999976

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00055  Score=62.37  Aligned_cols=133  Identities=11%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             CccccccccHHHHHHHHhc-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|-++.++.+...+..       ......++.++|+.|+|||.||+.+..  .+-..-...+-+..+.-.+... ..
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~--~l~~~~~~~~~~~~~~~~~~~~-~~   99 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHA-VS   99 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH--HHHSSGGGEEEECTTTCCSSGG-GG
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHH--HhcCCCcceEEEeccccccchh-hh
Confidence            3578888888888766642       123345888999999999999998876  2211111223333333221111 00


Q ss_pred             HHHHHcCCCCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCCCC----C-------CCcEEE
Q 015752          259 DIIKSVIPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLPDD----E-------NGSRVF  325 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~----~-------~gs~ii  325 (401)
                      .+   ++.+..-   ... ....+...+++   ....+|+||++.. .++.++.|...+..+    .       .++-+|
T Consensus       100 ~L---~g~~~gy---vG~~~~~~l~~~~~~---~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i  170 (315)
T d1qvra3         100 RL---IGAPPGY---VGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVII  170 (315)
T ss_dssp             GC--------------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEE
T ss_pred             hh---cCCCCCC---cCcccCChHHHHHHh---CCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEecCcceEEE
Confidence            01   0111000   000 11223333332   4578999999986 577777777665442    1       235566


Q ss_pred             EecCC
Q 015752          326 ITVTD  330 (401)
Q Consensus       326 vTTR~  330 (401)
                      +||.-
T Consensus       171 ~tsnl  175 (315)
T d1qvra3         171 LTSNL  175 (315)
T ss_dssp             EECCT
T ss_pred             Eeccc
Confidence            67764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00011  Score=59.35  Aligned_cols=22  Identities=9%  Similarity=0.134  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|.|++|+||||+|+.+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3578889999999999999987

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00013  Score=63.81  Aligned_cols=128  Identities=9%  Similarity=0.085  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCc------------cccc----CeEEEEEcCC----CCC-----------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHV------------KFYF----DCHAWVRVSL----DYD-----------------  252 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~------------~~~F----~~~~wv~vs~----~~~-----------------  252 (401)
                      .+++|+|+.|+|||||.+.+..-...            ...-    ..+.++.-..    ..+                 
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~  108 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS  108 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHH
Confidence            58999999999999999999652111            0000    1233332111    111                 


Q ss_pred             -HHHHHHHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEE
Q 015752          253 -FRRILDDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFI  326 (401)
Q Consensus       253 -~~~~~~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iiv  326 (401)
                       .....+.+++.++..........+ + -+...-.+...|..++=+|+||..-.  |+.....+...+.. ...|..||+
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~  188 (238)
T d1vpla_         109 EIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV  188 (238)
T ss_dssp             HHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence             122334444444432211112222 2 23333455666778888899999866  65444444443322 124678999


Q ss_pred             ecCChhHHhhc
Q 015752          327 TVTDPDLLASL  337 (401)
Q Consensus       327 TTR~~~v~~~~  337 (401)
                      ||.+-+.+...
T Consensus       189 ~tH~l~~~~~~  199 (238)
T d1vpla_         189 SSHNMLEVEFL  199 (238)
T ss_dssp             EECCHHHHTTT
T ss_pred             EeCCHHHHHHh
Confidence            99998877665

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.97  E-value=0.00027  Score=57.51  Aligned_cols=22  Identities=14%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++|.|.|++|+||||+|+.+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.0015  Score=57.90  Aligned_cols=92  Identities=15%  Similarity=0.073  Sum_probs=62.8

Q ss_pred             CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHH
Q 015752          205 GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKS  283 (401)
Q Consensus       205 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~  283 (401)
                      +-..-+++-|.|.+|+||||||.+++..  ....-..++|+.....++...     +++++.+....--... ..++..+
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~--~q~~g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~  128 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALE  128 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHH--HHHTTCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHH--HhcCCCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHH
Confidence            3344578999999999999999888763  333334689999999998654     5666665433211122 5666666


Q ss_pred             HHHHHcC-CceEEEEEeCCCC
Q 015752          284 ILRDYLT-NKKYFIVLDDVFD  303 (401)
Q Consensus       284 ~l~~~L~-~kr~LlVlDdv~~  303 (401)
                      .+..+.+ ++.-|||+|.+-.
T Consensus       129 ~~~~l~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         129 IADMLIRSGALDIVVIDSVAA  149 (269)
T ss_dssp             HHHHHHHTTCEEEEEEECSTT
T ss_pred             HHHHHHhcCCCCEEEEecccc
Confidence            6655554 5678999999854

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.93  E-value=0.0032  Score=54.24  Aligned_cols=57  Identities=21%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             HHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChhHHhh
Q 015752          280 LKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       280 ~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~  336 (401)
                      ...-.+.+.|..++-+|++|.--.  |+..-..+...+..  ...|..||++|.+.+++..
T Consensus       151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~  211 (230)
T d1l2ta_         151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF  211 (230)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTT
T ss_pred             HHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHh
Confidence            334455666777888999999866  54443444444332  2457789999999888753

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.92  E-value=0.00021  Score=57.21  Aligned_cols=22  Identities=14%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++|.|.|++|+||||||+.+..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998865

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00019  Score=58.41  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|++|+|.+|+|||||++++.+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00085  Score=55.35  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +...+|.++|++|+||||+|+.+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999998875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.88  E-value=0.00028  Score=57.83  Aligned_cols=36  Identities=8%  Similarity=-0.183  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCccc-ccCeEEEE
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKF-YFDCHAWV  245 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv  245 (401)
                      +-.+|.|+|++|+||||+|+.+..  ++.. +++...++
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~--~L~~~~~~~~~~~   41 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV--TLNQQGGRSVSLL   41 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH--HHHHHCSSCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH--HHhhcCCCchhhh
Confidence            447899999999999999999987  4433 33444444

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.84  E-value=0.0013  Score=57.07  Aligned_cols=125  Identities=14%  Similarity=0.041  Sum_probs=69.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEE----------------cCCC-------------------C---
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVR----------------VSLD-------------------Y---  251 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----------------vs~~-------------------~---  251 (401)
                      .+++|+|+.|+|||||.+.++.-..   .-.+.+|+.                +.|.                   .   
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~  101 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHH
Confidence            3778999999999999999965211   111222221                1111                   0   


Q ss_pred             CHHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEE
Q 015752          252 DFRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVF  325 (401)
Q Consensus       252 ~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~ii  325 (401)
                      ...+-..++++.++...........  .-+...-.+.+.|..++-+|+||.--.  |+..-..+...+..  ...|..||
T Consensus       102 ~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi  181 (240)
T d2onka1         102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL  181 (240)
T ss_dssp             HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence            1123456666666654322212222  223334455666778888999999765  54433344333322  12366788


Q ss_pred             EecCChhHHhhc
Q 015752          326 ITVTDPDLLASL  337 (401)
Q Consensus       326 vTTR~~~v~~~~  337 (401)
                      ++|.+...+..+
T Consensus       182 ~vtHd~~~~~~~  193 (240)
T d2onka1         182 HVTHDLIEAAML  193 (240)
T ss_dssp             EEESCHHHHHHH
T ss_pred             EEeCCHHHHHHh
Confidence            888886665554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.83  E-value=0.00034  Score=60.97  Aligned_cols=128  Identities=8%  Similarity=0.052  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCc------------cc---ccCeEEEEE----------cCC---------CCC---
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHV------------KF---YFDCHAWVR----------VSL---------DYD---  252 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~------------~~---~F~~~~wv~----------vs~---------~~~---  252 (401)
                      .+++|+|+.|+|||||.+.+..-.+.            ..   .-..+.++.          +.+         ..+   
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~  112 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE  112 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHH
Confidence            48999999999999999998542110            00   000122221          000         111   


Q ss_pred             HHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEE
Q 015752          253 FRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFI  326 (401)
Q Consensus       253 ~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iiv  326 (401)
                      ..+...++++.++...........  .-+...-.|.+.|..++-+|+||.--.  |+..-..+...+..  ...|..||+
T Consensus       113 ~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~  192 (239)
T d1v43a3         113 IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY  192 (239)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            233445566666554222111222  223333455666778888999999866  54433333333322  123677999


Q ss_pred             ecCChhHHhhc
Q 015752          327 TVTDPDLLASL  337 (401)
Q Consensus       327 TTR~~~v~~~~  337 (401)
                      +|.+...+..+
T Consensus       193 vTHd~~~a~~~  203 (239)
T d1v43a3         193 VTHDQVEAMTM  203 (239)
T ss_dssp             EESCHHHHHHH
T ss_pred             EeCCHHHHHHh
Confidence            99998877665

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.82  E-value=0.00045  Score=60.82  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             ccHHHHHHHHhcC---CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          193 RGREELFDLLIEG---SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       193 ~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.+.+.++.+..+   .+.++.|.++|++|+||||||+.+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          13 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445555556442   34567788999999999999999988

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00052  Score=62.52  Aligned_cols=130  Identities=10%  Similarity=0.075  Sum_probs=71.3

Q ss_pred             CccccccccHHHHHHHHhc-------CCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHH
Q 015752          186 LDISHFERGREELFDLLIE-------GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILD  258 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  258 (401)
                      ..++|-+..++.+...+..       .+....++.++|++|+|||.||+.+..  .+   +...+-++.+.-.+...   
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~--~l---~~~~i~~d~s~~~~~~~---   93 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--AL---GIELLRFDMSEYMERHT---   93 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH--HH---TCEEEEEEGGGCSSSSC---
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHh--hc---cCCeeEeccccccchhh---
Confidence            3578888888888776631       233456888999999999999999987  22   22333334332110000   


Q ss_pred             HHHHHcCCCCCCccccCcCHHHHHHHHHHHc-CCceEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEE
Q 015752          259 DIIKSVIPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-DSEIWIDVEELLPDD-----------ENGSRVF  325 (401)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~ii  325 (401)
                        ...+.+..     ...........+...+ +....+++||++.. .++.|+.+...+..+           ...+-||
T Consensus        94 --~~~l~g~~-----~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI  166 (315)
T d1r6bx3          94 --VSRLIGAP-----PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLV  166 (315)
T ss_dssp             --CSSSCCCC-----SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEE
T ss_pred             --hhhhcccC-----CCccccccCChhhHHHHhCccchhhhcccccccchHhhhhHHhhccceecCCCCCccCccceEEE
Confidence              01111111     1110011111122222 35567889999987 677777776655321           2345567


Q ss_pred             EecCC
Q 015752          326 ITVTD  330 (401)
Q Consensus       326 vTTR~  330 (401)
                      .||..
T Consensus       167 ~Tsni  171 (315)
T d1r6bx3         167 MTTNA  171 (315)
T ss_dssp             EEECS
T ss_pred             eccch
Confidence            77763

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0011  Score=58.64  Aligned_cols=88  Identities=13%  Similarity=-0.021  Sum_probs=59.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~  286 (401)
                      .-+++-|+|.+|+||||||.+++...  ...=..++|+.....++..     .++.++.+..+.--... +.++..+.+.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~--q~~g~~~vyidtE~~~~~~-----~a~~~Gvd~d~v~~~~~~~~E~~~~~i~  125 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD  125 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHH--HcCCCEEEEEccccccCHH-----HHHHhCCCHHHEEEecCCCHHHHHHHHH
Confidence            34689999999999999999988743  3333468999998888864     35666665333211112 5555555555


Q ss_pred             HHcC-CceEEEEEeCCC
Q 015752          287 DYLT-NKKYFIVLDDVF  302 (401)
Q Consensus       287 ~~L~-~kr~LlVlDdv~  302 (401)
                      ...+ ++.-|||+|.+-
T Consensus       126 ~l~~~~~~~liViDSi~  142 (263)
T d1u94a1         126 ALARSGAVDVIVVDSVA  142 (263)
T ss_dssp             HHHHHTCCSEEEEECGG
T ss_pred             HHHhcCCCCEEEEECcc
Confidence            5554 445699999983

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.79  E-value=0.0018  Score=57.29  Aligned_cols=89  Identities=11%  Similarity=0.023  Sum_probs=62.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE-DYQLKKSILR  286 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~  286 (401)
                      .-+++-|.|.+|+||||||..++...  ...=..++|+.....++..     ++++++.+..+.--... +.++..+.+.
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~a--qk~g~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~  128 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME  128 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHH--HhCCCEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence            45689999999999999998887632  2222468999999998874     66777776443211122 5666666666


Q ss_pred             HHcCC-ceEEEEEeCCCC
Q 015752          287 DYLTN-KKYFIVLDDVFD  303 (401)
Q Consensus       287 ~~L~~-kr~LlVlDdv~~  303 (401)
                      .+.+. +.-|||+|-+-.
T Consensus       129 ~l~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         129 LLVRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             HHHTTTCCSEEEEECTTT
T ss_pred             HHHhcCCCcEEEEecccc
Confidence            66654 567999999843

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00021  Score=59.72  Aligned_cols=36  Identities=11%  Similarity=-0.184  Sum_probs=26.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEE
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWV  245 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  245 (401)
                      +-.+|.++|++|+||||+|+.+..  .....+....++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~--~l~~~~~~~~~~   53 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE--YLVCHGIPCYTL   53 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH--HHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCccch
Confidence            456899999999999999999987  444444433443

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.74  E-value=0.0014  Score=55.52  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||.+.++.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4789999999999999999975

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.74  E-value=0.00026  Score=57.69  Aligned_cols=22  Identities=14%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|.|++|+||||+|+.+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999986

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.72  E-value=0.0004  Score=58.22  Aligned_cols=25  Identities=28%  Similarity=0.240  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.+.+|.|+|++|+||||+|+.+++
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999987

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.62  E-value=0.0028  Score=55.01  Aligned_cols=128  Identities=13%  Similarity=0.072  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcc---------------c-c-----cCeEEEEEcC----CCCCH-----------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVK---------------F-Y-----FDCHAWVRVS----LDYDF-----------  253 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------~-~-----F~~~~wv~vs----~~~~~-----------  253 (401)
                      .+++|+|+.|+|||||++.++.-....               . .     -..+.++.-.    ...++           
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~  109 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR  109 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc
Confidence            489999999999999999996421100               0 0     0123333211    01111           


Q ss_pred             -------HHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCC
Q 015752          254 -------RRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DEN  320 (401)
Q Consensus       254 -------~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~  320 (401)
                             .+...++++.++...........  .-+...-.+.+.|..++-+|++|.--.  |+..-..+...+..  ...
T Consensus       110 ~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~  189 (240)
T d1g2912         110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL  189 (240)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc
Confidence                   12244455555443221111222  223334456666778888999999765  54433444443332  123


Q ss_pred             CcEEEEecCChhHHhhc
Q 015752          321 GSRVFITVTDPDLLASL  337 (401)
Q Consensus       321 gs~iivTTR~~~v~~~~  337 (401)
                      |..||++|.+-+.+..+
T Consensus       190 g~tvi~vTHd~~~~~~~  206 (240)
T d1g2912         190 GVTTIYVTHDQVEAMTM  206 (240)
T ss_dssp             TCEEEEEESCHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHh
Confidence            77899999998776665

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.62  E-value=0.00044  Score=56.43  Aligned_cols=23  Identities=4%  Similarity=0.027  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|.|.|++|+||||+|+.+.+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00058  Score=55.55  Aligned_cols=25  Identities=16%  Similarity=0.286  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+++.|.|++|+||||+|+.+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999987

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.004  Score=52.83  Aligned_cols=59  Identities=10%  Similarity=0.008  Sum_probs=37.9

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCH--HHHHHHHHHHcCCC
Q 015752          206 SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDF--RRILDDIIKSVIPP  267 (401)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~  267 (401)
                      .+.+.||.++|+.|+||||.+.+++.  ..+ .....+.+-....+..  .+-++...+.++.+
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~--~~~-~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~   66 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLAR--QFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP   66 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHH--HHH-TTTCCEEEECCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH--HHH-HCCCcEEEEecccccccchhhhhhhhhhcCCc
Confidence            34578999999999999987666665  233 2233455554555554  44566666666654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00037  Score=57.19  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +.|.|+|++|+|||||++.++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            46889999999999999999863

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00064  Score=57.06  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..++|.|.|++|+||||+|+.+++
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999987

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.56  E-value=0.00062  Score=55.49  Aligned_cols=24  Identities=21%  Similarity=0.062  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....|.|.|++|+||||+|+.+.+
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            445788999999999999999987

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.53  E-value=0.0007  Score=55.23  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -++|.|.|++|+||||+|+.+..
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999976

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00048  Score=56.26  Aligned_cols=20  Identities=10%  Similarity=0.140  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.++||+|+||||+++.+++
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            34559999999999999987

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.48  E-value=0.00058  Score=56.13  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++|+|.|++|+||||+++.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999976

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.48  E-value=0.0065  Score=52.14  Aligned_cols=128  Identities=16%  Similarity=0.094  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---ccC------------eEEEEEc----CCCCCH---------------HH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YFD------------CHAWVRV----SLDYDF---------------RR  255 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~------------~~~wv~v----s~~~~~---------------~~  255 (401)
                      .+++|+|+.|+|||||.+.+..-.....   .|+            .+.++.-    -...++               .+
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~  106 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK  106 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccHHH
Confidence            4899999999999999999964211100   000            1111110    001111               22


Q ss_pred             HHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecC
Q 015752          256 ILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENGSRVFITVT  329 (401)
Q Consensus       256 ~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~iivTTR  329 (401)
                      -..++++.++...........  .-+...-.+.+.|..++=+|+||.--.  |+..-..+...+..  ...|..||++|.
T Consensus       107 ~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH  186 (229)
T d3d31a2         107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH  186 (229)
T ss_dssp             HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            344555555544222212222  223334456667778888999999766  54333333333332  124677888888


Q ss_pred             ChhHHhhc
Q 015752          330 DPDLLASL  337 (401)
Q Consensus       330 ~~~v~~~~  337 (401)
                      +...+...
T Consensus       187 d~~~~~~~  194 (229)
T d3d31a2         187 DQTEARIM  194 (229)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            88766554

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.00071  Score=57.03  Aligned_cols=23  Identities=9%  Similarity=0.076  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.+|.++|.+|+||||||++++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999986

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.42  E-value=0.0056  Score=53.16  Aligned_cols=23  Identities=17%  Similarity=0.109  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -..++|+|+.|+|||||++.+..
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999953

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.42  E-value=0.0037  Score=52.99  Aligned_cols=59  Identities=15%  Similarity=-0.025  Sum_probs=38.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCCC
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIPP  267 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~  267 (401)
                      .+.++|.++|+.|+||||.+.+++..  .+.+=..+..++... .....+-++...+.++.+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~--~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   63 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP   63 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEeccccccchhhHhhcccccCce
Confidence            35679999999999999877666653  222223566666433 445556666666666543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00074  Score=58.79  Aligned_cols=128  Identities=12%  Similarity=0.156  Sum_probs=69.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---ccC-----------------eEEEEEcCC----C---------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YFD-----------------CHAWVRVSL----D---------------  250 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~-----------------~~~wv~vs~----~---------------  250 (401)
                      .+++|+|+.|+|||||++.++.-.+...   .|+                 .+.+|.-..    .               
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~  111 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  111 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC
Confidence            5899999999999999999964211100   000                 112221000    0               


Q ss_pred             ---CCHHHHHHHHHHHcCCCCCCccccCc-C-HHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCC
Q 015752          251 ---YDFRRILDDIIKSVIPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENG  321 (401)
Q Consensus       251 ---~~~~~~~~~i~~~l~~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~g  321 (401)
                         ....+...++++.++........... + -+...-.+.+.|..++-+|++|.--.  |+..-..+...+..  ...|
T Consensus       112 ~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g  191 (240)
T d3dhwc1         112 TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG  191 (240)
T ss_dssp             CCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccC
Confidence               01233445566665554322211222 2 23333445566678888999999644  44333334333332  1237


Q ss_pred             cEEEEecCChhHHhhc
Q 015752          322 SRVFITVTDPDLLASL  337 (401)
Q Consensus       322 s~iivTTR~~~v~~~~  337 (401)
                      ..||++|.+...+..+
T Consensus       192 ~tvi~vTHdl~~~~~~  207 (240)
T d3dhwc1         192 LTILLITHEMDVVKRI  207 (240)
T ss_dssp             CEEEEEBSCHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHh
Confidence            7899999998877665

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.39  E-value=0.00056  Score=55.72  Aligned_cols=20  Identities=15%  Similarity=0.182  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|.||+|+||||+++.++.
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67789999999999999987

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.37  E-value=0.00078  Score=54.89  Aligned_cols=22  Identities=14%  Similarity=0.042  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++++|+|..|+|||||+.++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            6899999999999999999987

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.32  E-value=0.0042  Score=52.63  Aligned_cols=57  Identities=18%  Similarity=-0.099  Sum_probs=33.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCC
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIP  266 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~  266 (401)
                      +.+||.++|+.|+||||.+.+++..  .+..-..+..++... .....+-++...+.++.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~--~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v   66 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV   66 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEecccccchHHHHHHHHHHhcCC
Confidence            4579999999999999877766652  222223344444322 22233445555555554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.29  E-value=0.0042  Score=52.75  Aligned_cols=59  Identities=12%  Similarity=-0.098  Sum_probs=30.1

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCC
Q 015752          206 SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIP  266 (401)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~  266 (401)
                      .+.+.||.++|+.|+||||.+.+++..  .+..=..+..++... .....+-++...+.++.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~--~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v   68 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV   68 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHH--HHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCceEEEEeeccccchhHHHHHhccccCc
Confidence            356789999999999999866666552  222212355555422 22233334444555443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.29  E-value=0.0013  Score=54.08  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|.|.|++|+||||+++.+..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36889999999999999999987

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.27  E-value=0.0053  Score=52.19  Aligned_cols=59  Identities=10%  Similarity=-0.126  Sum_probs=36.1

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC-CCCHHHHHHHHHHHcCC
Q 015752          206 SSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL-DYDFRRILDDIIKSVIP  266 (401)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~  266 (401)
                      ...+.||.++|+.|+||||.+.+++..  ...+-..+..++... .....+-++...+.++.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~--~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i   67 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGA   67 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCceEEEeecccccchhHHHHHHhhhcCc
Confidence            356789999999999999866666652  222223455555432 23334455565565554

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.26  E-value=0.00062  Score=55.88  Aligned_cols=21  Identities=10%  Similarity=0.170  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|.++|++|+||||+|+.+++
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            466889999999999999987

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.012  Score=51.35  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|+|+.|+|||||++.+..
T Consensus        41 e~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            5899999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.22  E-value=0.0051  Score=53.95  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHc
Confidence            5899999999999999999965

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0011  Score=55.23  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.+|.|.|++|+||||+|+.+++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999987

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.19  E-value=0.004  Score=53.55  Aligned_cols=89  Identities=11%  Similarity=-0.030  Sum_probs=54.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCC--------c-c-ccCc-
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRV--------S-V-IIGE-  276 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--------~-~-~~~~-  276 (401)
                      .-.++.|.|.+|+|||+||.++..  ....+...++|++...+  ...+.+ .+..++.....        . . .... 
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~--~~~~~~~~~~~is~e~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVE--NACANKERAILFAYEES--RAQLLR-NAYSWGMDFEEMERQNLLKIVCAYPESA   99 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEESSSC--HHHHHH-HHHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH--HHHHhccccceeeccCC--HHHHHH-HHHHcCCChHHHhhcCceEEEEeecchh
Confidence            446889999999999999999987  45556677888876543  223222 22222221100        0 0 0112 


Q ss_pred             CHHHHHHHHHHHcC-CceEEEEEeCC
Q 015752          277 DYQLKKSILRDYLT-NKKYFIVLDDV  301 (401)
Q Consensus       277 ~~~~l~~~l~~~L~-~kr~LlVlDdv  301 (401)
                      ........+...+. .+.-++|+|++
T Consensus       100 ~~~~~~~~i~~~i~~~~~~~vviDs~  125 (242)
T d1tf7a2         100 GLEDHLQIIKSEINDFKPARIAIDSL  125 (242)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECH
T ss_pred             hHHHHHHHHHHHHHhcCCceeeeecc
Confidence            55565666666554 46678899986

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.17  E-value=0.0011  Score=54.37  Aligned_cols=20  Identities=20%  Similarity=0.305  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |+|+|++|+|||||++.+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHh
Confidence            78999999999999999986

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0027  Score=54.83  Aligned_cols=128  Identities=13%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc--ccC--------------eEEEEEcCC-----------------CCCHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF--YFD--------------CHAWVRVSL-----------------DYDFRRI  256 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~--------------~~~wv~vs~-----------------~~~~~~~  256 (401)
                      .+++|+|+.|+|||||.+.+..-...+.  .|+              ...++....                 .....+.
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  105 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL  105 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhHHHH
Confidence            4899999999999999998864111000  000              011221111                 1122445


Q ss_pred             HHHHHHHcCCCCCCccccCc-C--HHHHHHHHHHHcC------CceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEE
Q 015752          257 LDDIIKSVIPPSRVSVIIGE-D--YQLKKSILRDYLT------NKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRV  324 (401)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~-~--~~~l~~~l~~~L~------~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~i  324 (401)
                      ..+++..++........... +  ..+.....+..++      ..+=+|+||.--.  |...-..+...+.. ...|..|
T Consensus       106 ~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~ti  185 (231)
T d1l7vc_         106 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAI  185 (231)
T ss_dssp             HHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            56666666554322212223 3  3333333333332      2457999999866  54333333322221 1347789


Q ss_pred             EEecCChhHHhhc
Q 015752          325 FITVTDPDLLASL  337 (401)
Q Consensus       325 ivTTR~~~v~~~~  337 (401)
                      |++|.+-+.+..+
T Consensus       186 i~vtHdl~~~~~~  198 (231)
T d1l7vc_         186 VMSSHDLNHTLRH  198 (231)
T ss_dssp             EECCCCHHHHHHH
T ss_pred             EEEeCCHHHHHHH
Confidence            9999997654443

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.12  E-value=0.0092  Score=51.59  Aligned_cols=128  Identities=18%  Similarity=0.250  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCccc---cc-----------------CeEEEEEcCC----C---------------
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKF---YF-----------------DCHAWVRVSL----D---------------  250 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-----------------~~~~wv~vs~----~---------------  250 (401)
                      .+++|+|+.|+|||||.+.+..-.....   .|                 ..+.+|.-..    .               
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~  111 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK  111 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhc
Confidence            5899999999999999999854211000   00                 1122221110    0               


Q ss_pred             CC---HHHHHHHHHHHcCCCCCCccccCc--CHHHHHHHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC--CCCC
Q 015752          251 YD---FRRILDDIIKSVIPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD--DENG  321 (401)
Q Consensus       251 ~~---~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~g  321 (401)
                      .+   ..+-..++++.++..........+  .-+...-.+.+.|..++-+|++|.--.  |+..-..+...+.+  ...|
T Consensus       112 ~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g  191 (242)
T d1oxxk2         112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG  191 (242)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccC
Confidence            11   123355666666553211111222  223334456667778889999999765  54444444443332  1236


Q ss_pred             cEEEEecCChhHHhhc
Q 015752          322 SRVFITVTDPDLLASL  337 (401)
Q Consensus       322 s~iivTTR~~~v~~~~  337 (401)
                      ..||++|.+.+.+..+
T Consensus       192 ~tvi~vTHd~~~~~~~  207 (242)
T d1oxxk2         192 VTLLVVSHDPADIFAI  207 (242)
T ss_dssp             CEEEEEESCHHHHHHH
T ss_pred             CEEEEEECCHHHHHHh
Confidence            7799999987766554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.10  E-value=0.0021  Score=56.46  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|+|..|+|||||++.+..
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            5789999999999999998853

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.09  E-value=0.0054  Score=54.17  Aligned_cols=104  Identities=17%  Similarity=0.248  Sum_probs=61.3

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCC----CCCc
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPP----SRVS  271 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~----~~~~  271 (401)
                      +.++.|..=..+. -++|.|.+|+|||+|+..+.++. .+.+=+.++++-+++... ..++..++.+.-...    ....
T Consensus        57 raID~l~pigkGQ-r~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~t  134 (276)
T d2jdid3          57 KVVDLLAPYAKGG-KIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV  134 (276)
T ss_dssp             HHHHHHSCEETTC-EEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred             eeeeeeccccCCC-EEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceE
Confidence            5666665422233 47899999999999999998742 223335678888888654 556777776642111    0000


Q ss_pred             ----cccCcC-H-----HHHHHHHHHHc---CCceEEEEEeCCC
Q 015752          272 ----VIIGED-Y-----QLKKSILRDYL---TNKKYFIVLDDVF  302 (401)
Q Consensus       272 ----~~~~~~-~-----~~l~~~l~~~L---~~kr~LlVlDdv~  302 (401)
                          ...++. .     ....-.+.+++   +|+.+|+++||+-
T Consensus       135 vvv~~~s~~~~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dslt  178 (276)
T d2jdid3         135 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF  178 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchh
Confidence                001111 1     12223445555   3799999999983

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.07  E-value=0.0023  Score=56.13  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|+|+.|+|||||++.+..
T Consensus        42 e~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4899999999999999999954

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0015  Score=55.47  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+||+|.|++|+||||+|+.+.+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35999999999999999999987

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.95  E-value=0.0015  Score=54.39  Aligned_cols=23  Identities=13%  Similarity=-0.137  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..|.|.|++|+||||+|+.+.+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34577999999999999999987

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0027  Score=55.18  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|+|..|+|||||++.+..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999965

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.91  E-value=0.011  Score=51.57  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus        31 ei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHC
Confidence            4899999999999999999976

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.89  E-value=0.0022  Score=53.31  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++++| |.|++|+||||+|+.+..
T Consensus         2 ~~~rii-l~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAV-LLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEE-EECCTTSSHHHHHHHHHH
T ss_pred             CccEEE-EECCCCCCHHHHHHHHHH
Confidence            356666 689999999999999987

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0022  Score=54.30  Aligned_cols=23  Identities=9%  Similarity=0.101  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +-+|+|.|..|+||||+|+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0016  Score=59.01  Aligned_cols=46  Identities=13%  Similarity=0.064  Sum_probs=33.7

Q ss_pred             CccccccccHHHHHHHHhc------------CCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          186 LDISHFERGREELFDLLIE------------GSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++|-++.++.+...+..            .....+.+.++|++|+|||.||+.+++
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhh
Confidence            3468888888777665521            011345677899999999999999987

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.82  E-value=0.0019  Score=53.06  Aligned_cols=20  Identities=15%  Similarity=0.157  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|.|++|+||||+|+.++.
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999977

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.023  Score=50.31  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++|+|+.|+|||||++.+..
T Consensus        63 e~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhC
Confidence            5799999999999999999975

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.78  E-value=0.0016  Score=56.72  Aligned_cols=55  Identities=9%  Similarity=0.169  Sum_probs=33.1

Q ss_pred             HHHHHHcCCceEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChhHHhhc
Q 015752          283 SILRDYLTNKKYFIVLDDVFD--DSEIWIDVEELLPD-DENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       283 ~~l~~~L~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~  337 (401)
                      -.+.+.|..++=+|+||.--.  |+..-..+...+.. ...|..||++|.+-+.+..+
T Consensus       148 v~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~  205 (240)
T d1ji0a_         148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKV  205 (240)
T ss_dssp             HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred             HHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            345566777888999999765  54333333322221 12367788888886655444

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0051  Score=55.94  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++++.+.....+..+|+|.|++|+|||||...+..
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            455666655566789999999999999999988865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.76  E-value=0.0025  Score=53.21  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..-|.|.|++|+||||+|+.+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            445566889999999999999987

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.74  E-value=0.0023  Score=53.38  Aligned_cols=24  Identities=8%  Similarity=0.122  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.++|.|.|++|+||||+|+.+..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999987

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.71  E-value=0.0029  Score=53.73  Aligned_cols=25  Identities=8%  Similarity=-0.003  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++..+|.+.|++|+||||||+.+..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999876

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.71  E-value=0.003  Score=52.50  Aligned_cols=23  Identities=22%  Similarity=0.109  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhh
Q 015752          208 GLSVVAILDSGGFDKTAFAADTY  230 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~  230 (401)
                      .+.+|+|.|+.|+||||+|..+-
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999999774

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.65  E-value=0.0025  Score=54.12  Aligned_cols=22  Identities=18%  Similarity=0.040  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -+|+|-|++|+||||+|+.+..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999987

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.64  E-value=0.0024  Score=52.55  Aligned_cols=21  Identities=24%  Similarity=0.173  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -|.|.|++|+||||+|+.+++
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367889999999999999987

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.63  E-value=0.0025  Score=52.58  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|.|.|++|+||||+|+.++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999987

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.60  E-value=0.0052  Score=55.81  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=29.8

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..++.+.+.....+..+|+|.|+||+|||||..++..
T Consensus        37 ~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          37 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            4455666665566789999999999999999988875

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.52  E-value=0.0033  Score=55.26  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.|+|+|-||+||||+|..+..
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCcCCHHHHHHHHHH
Confidence            36899999999999999988866

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.0028  Score=52.66  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|+|++|+|||||++.+.+
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999987

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.43  E-value=0.015  Score=52.46  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++.++|++|+|||.||+.++.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            4566789999999999999998

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.01  Score=52.05  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          194 GREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       194 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++..+.+.+..  .+.++|.+.|-||+||||+|..+..
T Consensus         7 ~~~~~~~~~~~--~~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2           7 SLSALVDDIAR--NEHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             CHHHHHHHHHT--TSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34556666654  5678999999999999998766654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0029  Score=52.83  Aligned_cols=21  Identities=14%  Similarity=0.294  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|+|+|++|+|||||++.+..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999876

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0039  Score=51.12  Aligned_cols=20  Identities=15%  Similarity=0.021  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|.|++|+||||+|+.++.
T Consensus         3 I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66899999999999999987

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.25  E-value=0.005  Score=51.17  Aligned_cols=26  Identities=19%  Similarity=0.077  Sum_probs=22.7

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          206 SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.+..+|+|-|.-|+||||+++.+.+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            34567999999999999999998876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.004  Score=51.23  Aligned_cols=20  Identities=15%  Similarity=0.227  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |.|.|++|+||||+|+.+..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            44779999999999999987

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.23  E-value=0.0043  Score=51.12  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++|.|+|++|+|||||++.+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4788999999999999999876

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.0075  Score=53.32  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..++|.+.|-||+||||+|..+..
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHH
Confidence            3467899999999999998877755

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.036  Score=49.55  Aligned_cols=26  Identities=15%  Similarity=-0.000  Sum_probs=23.1

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          206 SSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ...+-+|+|.|..|+||||+|+.+..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            35678999999999999999999876

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.10  E-value=0.015  Score=51.34  Aligned_cols=100  Identities=13%  Similarity=0.112  Sum_probs=53.7

Q ss_pred             EEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC-HHHHHHHHHHHcCCCCCCc-----c-ccCc--CHHHHH
Q 015752          212 VAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD-FRRILDDIIKSVIPPSRVS-----V-IIGE--DYQLKK  282 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-----~-~~~~--~~~~l~  282 (401)
                      ++|.|.+|+|||+|+.....  ....+-..++++-+..... ..++..++.+.-.......     + ....  -.....
T Consensus        70 ~~Ifg~~g~GKt~l~~~~~~--~~~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~~~a  147 (276)
T d1fx0a3          70 ELIIGDRQTGKTAVATDTIL--NQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTG  147 (276)
T ss_dssp             CBEEESSSSSHHHHHHHHHH--TCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHH
T ss_pred             EeeccCCCCChHHHHHHHHh--hhcccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHHHHH
Confidence            67889999999999987654  2334445778887777653 2333333332210000000     0 0000  111333


Q ss_pred             HHHHHHc--CCceEEEEEeCCCCCchhHHHHHh
Q 015752          283 SILRDYL--TNKKYFIVLDDVFDDSEIWIDVEE  313 (401)
Q Consensus       283 ~~l~~~L--~~kr~LlVlDdv~~~~~~~~~l~~  313 (401)
                      -.+.+++  ++++.|+++||+-.-..++.++..
T Consensus       148 ~tiAEyfrd~G~~Vlll~Dsltr~A~A~rEis~  180 (276)
T d1fx0a3         148 AALAEYFMYRERHTLIIYDDLSKQAQAYRQMSL  180 (276)
T ss_dssp             HHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCceeEEeeccHHHHHHHHHHHH
Confidence            4444554  589999999998331234444443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0033  Score=55.89  Aligned_cols=99  Identities=16%  Similarity=0.087  Sum_probs=51.6

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEE-EcCCCCCHHHHHHHHHHHcCCCCCCccccC
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWV-RVSLDYDFRRILDDIIKSVIPPSRVSVIIG  275 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~  275 (401)
                      ++++.|..=..+ .-++|.|..|+|||+|+..+.++... ++-.+++.+ .+.+....   ..++........-- ...+
T Consensus        32 r~ID~l~PigrG-Qr~~I~g~~g~GKT~l~~~i~~~~~~-~~~~~v~~~~~iger~~e---v~~~~~~~~~~vv~-~t~d  105 (289)
T d1xpua3          32 RVLDLASPIGRG-QRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVLLIDERPEE---VTEMQRLVKGEVVA-STFD  105 (289)
T ss_dssp             HHHHHHSCCBTT-CEEEEEECSSSSHHHHHHHHHHHHHH-HCTTSEEEEEEEEECHHH---HHHHHHHCSSEEEE-EETT
T ss_pred             eeeeecccccCC-CeeeEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEeeceeHHH---HHhHHhhcceEEEe-ccCC
Confidence            577777653222 35678999999999999999874322 223333333 33433222   22223322111000 0001


Q ss_pred             c------CHHHHHHHHHHHc--CCceEEEEEeCC
Q 015752          276 E------DYQLKKSILRDYL--TNKKYFIVLDDV  301 (401)
Q Consensus       276 ~------~~~~l~~~l~~~L--~~kr~LlVlDdv  301 (401)
                      .      -.....-.+.+++  +|+.+||++||+
T Consensus       106 ~~~~~r~~~~~~a~~iAEyfrd~G~dVLli~Dsl  139 (289)
T d1xpua3         106 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI  139 (289)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhccCceeecCcH
Confidence            0      1112233344444  579999999997

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.017  Score=49.02  Aligned_cols=47  Identities=4%  Similarity=-0.059  Sum_probs=33.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFR  254 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~  254 (401)
                      .-+++.|.|.+|+|||||+.++.........    -..++|+.....+...
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   83 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV   83 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHH
Confidence            3468999999999999999988764333222    2467888877766533

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0054  Score=50.56  Aligned_cols=22  Identities=9%  Similarity=0.243  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.|+|++|+|||||++++..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999886

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.92  E-value=0.0077  Score=55.51  Aligned_cols=44  Identities=9%  Similarity=0.034  Sum_probs=30.9

Q ss_pred             cccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          188 ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       188 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|.+....+..+.+..+.+..+.+.++|++|+|||++|..+++
T Consensus       133 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            33444434344444444555667889999999999999999998

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.68  E-value=0.0081  Score=53.29  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.|+|.|-||+||||+|..+..
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~   24 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999998888765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.67  E-value=0.0077  Score=51.51  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ||+|.|+.|+|||||..++.+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            789999999999999999875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.64  E-value=0.043  Score=46.76  Aligned_cols=49  Identities=14%  Similarity=0.141  Sum_probs=34.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcc----cccCeEEEEEcCCCCCHHHH
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVK----FYFDCHAWVRVSLDYDFRRI  256 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~  256 (401)
                      .-.++.|.|.+|+||||+|.++..+....    ......+|+......+...+
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI   87 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHH
Confidence            44699999999999999999887643221    12356788887777665443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.62  E-value=0.014  Score=51.83  Aligned_cols=24  Identities=8%  Similarity=0.147  Sum_probs=18.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..+|+|.|.+|+||||+++.+.+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            456999999999999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=0.016  Score=51.35  Aligned_cols=85  Identities=14%  Similarity=0.105  Sum_probs=45.5

Q ss_pred             CCCCceEEEEEcCCCCchHHHHHHhhcccCcccc--cC-eEEEEEcCCCCCHHHHHHHHHHHcCCCCC-Cc-cccCc-CH
Q 015752          205 GSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFY--FD-CHAWVRVSLDYDFRRILDDIIKSVIPPSR-VS-VIIGE-DY  278 (401)
Q Consensus       205 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-~~-~~~~~-~~  278 (401)
                      ....+-+|+|.|..|+|||||+..+..  .+...  +. .++-+++..=+-...-...+......... .. ..... +.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~--~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~  100 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDM  100 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHH--HHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhH
Confidence            345567999999999999999998866  33222  22 34555544422212222333333311100 00 01233 77


Q ss_pred             HHHHHHHHHHcCC
Q 015752          279 QLKKSILRDYLTN  291 (401)
Q Consensus       279 ~~l~~~l~~~L~~  291 (401)
                      ..+.+.+....++
T Consensus       101 ~ll~~~l~~l~~~  113 (286)
T d1odfa_         101 KLLQEVLNTIFNN  113 (286)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhh
Confidence            7777777776654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.38  E-value=0.0091  Score=47.23  Aligned_cols=21  Identities=10%  Similarity=0.018  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||||..++..+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            568999999999999998764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.19  E-value=0.017  Score=46.68  Aligned_cols=34  Identities=12%  Similarity=0.019  Sum_probs=24.6

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +.+.+.-.....+ |+|+|.+|+|||||..++...
T Consensus         3 ~~~~~~~~~k~~k-I~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           3 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             hHHhccccCCCCE-EEEECCCCCCHHHHHHHHhCC
Confidence            4455544444444 669999999999999998654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.16  E-value=0.012  Score=46.85  Aligned_cols=22  Identities=23%  Similarity=0.185  Sum_probs=19.4

Q ss_pred             EEEEcCCCCchHHHHHHhhccc
Q 015752          212 VAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      |+|+|.+|+|||||..++.++.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999987653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.13  E-value=0.018  Score=46.50  Aligned_cols=24  Identities=13%  Similarity=0.073  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ---|+++|.+|+|||||..++.+.
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            344679999999999999998763

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.10  E-value=0.011  Score=53.47  Aligned_cols=43  Identities=16%  Similarity=0.131  Sum_probs=30.8

Q ss_pred             CccccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhh
Q 015752          186 LDISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTY  230 (401)
Q Consensus       186 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~  230 (401)
                      .+++|.+..+..|.-.+...  +..-+.+.|.+|+||||||+.+.
T Consensus         7 ~~I~Gq~~~kral~laa~~~--~~h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_           7 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHhcc--CCCeEEEECCCCccHHHHHHHHH
Confidence            78899987766554333321  12346789999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.071  Score=45.24  Aligned_cols=58  Identities=10%  Similarity=0.044  Sum_probs=39.1

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccC----cccccCeEEEEEcCCCCCHHH
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNH----VKFYFDCHAWVRVSLDYDFRR  255 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~vs~~~~~~~  255 (401)
                      |-++|..+=..-.++.|.|.+|+|||++|.+++.+..    ....+..+.|+.....+....
T Consensus        26 LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (258)
T d1v5wa_          26 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR   87 (258)
T ss_dssp             HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH
T ss_pred             HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHH
Confidence            3333433334457999999999999999998875322    223456788888777766443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.02  E-value=0.015  Score=48.08  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+++.|+|+|.+|+|||||...+.+
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcC
Confidence            4566899999999999999999975

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.011  Score=50.57  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+.|+|-|+-|+||||+++.+.+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998877

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.01  E-value=0.017  Score=48.97  Aligned_cols=37  Identities=16%  Similarity=0.124  Sum_probs=26.9

Q ss_pred             ceEEEEE-cCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752          209 LSVVAIL-DSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV  247 (401)
Q Consensus       209 ~~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v  247 (401)
                      .++|+|. |-||+||||+|..++.  .....-..+..|..
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~--~la~~g~~VlliD~   38 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGV--ALAQLGHDVTIVDA   38 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEeC
Confidence            3788888 7899999999998876  33333345666654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.014  Score=49.88  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +++.|+|-|+-|+||||+++.+.+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            468999999999999999999986

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.92  E-value=0.016  Score=46.39  Aligned_cols=21  Identities=10%  Similarity=0.316  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||||+..+.++
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999988764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.014  Score=49.25  Aligned_cols=22  Identities=9%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|.|+|++|+|||||.+.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4788999999999999999886

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.73  E-value=0.077  Score=46.10  Aligned_cols=53  Identities=11%  Similarity=0.084  Sum_probs=32.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .++.|.|.+|+|||+++..+..+......+ .+.+++..  .+...+...++....
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-~v~~~s~E--~~~~~~~~r~~~~~~   88 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGK-KVGLAMLE--ESVEETAEDLIGLHN   88 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEESS--SCHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhccc-ceeEeeec--cchhhHHhHHHHHhh
Confidence            577899999999999998887532223333 34455543  344555555554433

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.018  Score=48.48  Aligned_cols=22  Identities=5%  Similarity=0.068  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..|+|-|+.|+||||+++.+.+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999987

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.68  E-value=0.016  Score=46.33  Aligned_cols=21  Identities=10%  Similarity=0.216  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||||..++.++
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.019  Score=46.51  Aligned_cols=21  Identities=14%  Similarity=0.252  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||+|+.++.++
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            668999999999999998765

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.56  E-value=0.16  Score=38.80  Aligned_cols=52  Identities=12%  Similarity=-0.033  Sum_probs=32.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      +.++..|+++.|.|||+++-.++..      ....+.+.+....-.....+.+.+.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~------~~~~vli~~P~~~l~~q~~~~~~~~~~   58 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHG   58 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHT------TTCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH------cCCcEEEEcChHHHHHHHHHHHHHHhh
Confidence            4578889999999999988666541      233455555544334444444444443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.56  E-value=0.02  Score=46.70  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=24.7

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .+.+.|.......++ .++|.+|+|||||..++.+.
T Consensus         6 ~~~~~l~~~~k~~KI-~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_           6 SMFDKLWGSNKELRI-LILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             HHHGGGTTCSSCEEE-EEEEETTSSHHHHHHHTCCS
T ss_pred             HHHHHHhCCCceEEE-EEECCCCCCHHHHHHHHhcC
Confidence            344444444445554 58999999999999998653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.017  Score=47.88  Aligned_cols=48  Identities=8%  Similarity=0.007  Sum_probs=31.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhcccCcccc----cCeEEEEEcCCCCCHHHH
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSLDYDFRRI  256 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~  256 (401)
                      -.++.|.|.+|+|||+||.++..+......    +....++..........+
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL   74 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHH
Confidence            468899999999999999888764332222    234555555555554433

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.018  Score=48.34  Aligned_cols=20  Identities=25%  Similarity=0.220  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHhh
Q 015752          211 VVAILDSGGFDKTAFAADTY  230 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~  230 (401)
                      +|+|+|+.|+||||+|+.+-
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            89999999999999998664

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.011  Score=54.50  Aligned_cols=47  Identities=15%  Similarity=0.085  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCchHHHHHHhhccc-CcccccCeEEEEEcCCCCCHHHH
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNN-HVKFYFDCHAWVRVSLDYDFRRI  256 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~  256 (401)
                      ++..|.|++|.||||++..+.... +....-...+.+.....-....+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L  211 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL  211 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHH
Confidence            588899999999999876543310 11111234566666554333333

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.023  Score=45.77  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||||...+.++
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            568899999999999988764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.46  E-value=0.02  Score=45.81  Aligned_cols=21  Identities=14%  Similarity=0.118  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||||..++.+.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            569999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.023  Score=45.39  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||+|+.++.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.37  E-value=0.066  Score=45.12  Aligned_cols=57  Identities=11%  Similarity=0.008  Sum_probs=36.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccc--------------cCeEEEEEcCCCCCHHHHHHHHHHHcC
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFY--------------FDCHAWVRVSLDYDFRRILDDIIKSVI  265 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------------F~~~~wv~vs~~~~~~~~~~~i~~~l~  265 (401)
                      .-.++.|.|.+|+|||++|.+++.+......              ...+.|+......+.. ....+...+.
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~-~~~~~~~~~~  103 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE-RIMQMAEHAG  103 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHH-HHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcCHH-HHHHHHhhcc
Confidence            3468999999999999999999764322211              1246788776665533 3334444443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.34  E-value=0.023  Score=45.60  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHhhccc
Q 015752          212 VAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      |+|+|.+|+|||||..++.++.
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5688999999999999987643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.28  E-value=0.022  Score=45.85  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|+|+|.+|+|||||..++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999975

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.025  Score=45.35  Aligned_cols=21  Identities=14%  Similarity=0.200  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||+|+.++.++
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.026  Score=45.28  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||+|..++.++
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.17  E-value=0.025  Score=45.61  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||||...+.++
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            679999999999999998754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.023  Score=46.50  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||||+..+.++
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.17  E-value=0.05  Score=47.97  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=52.7

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcc-----ccc-CeEEEEEcCCCCC-HHHHHHHHHHHcCCCCC
Q 015752          197 ELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVK-----FYF-DCHAWVRVSLDYD-FRRILDDIIKSVIPPSR  269 (401)
Q Consensus       197 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F-~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~  269 (401)
                      +.++.|..=..+ .-++|.|.+|+|||+|+..+.......     ..- ..++++-+++... ..++...+...-.....
T Consensus        57 raID~l~pig~G-Qr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~t  135 (285)
T d2jdia3          57 KAVDSLVPIGRG-QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT  135 (285)
T ss_dssp             HHHHHHSCCBTT-CBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred             eEEecccCccCC-CEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccce
Confidence            456666542222 345788999999999988776532111     111 1356666777654 34444444433111100


Q ss_pred             Cc--cccCc-CH-----HHHHHHHHHHc--CCceEEEEEeCC
Q 015752          270 VS--VIIGE-DY-----QLKKSILRDYL--TNKKYFIVLDDV  301 (401)
Q Consensus       270 ~~--~~~~~-~~-----~~l~~~l~~~L--~~kr~LlVlDdv  301 (401)
                      -.  ...++ ..     ....-.+.+++  +||.+|+++||+
T Consensus       136 vvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~G~~VLll~Dsl  177 (285)
T d2jdia3         136 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL  177 (285)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCh
Confidence            00  00011 11     11112233333  689999999997

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.13  E-value=0.023  Score=47.57  Aligned_cols=21  Identities=24%  Similarity=0.126  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhh
Q 015752          210 SVVAILDSGGFDKTAFAADTY  230 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~  230 (401)
                      .+|+|+|..|+||||+|+.+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.13  E-value=0.022  Score=47.33  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .|+|-|.-|+||||+++.+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998876

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.026  Score=45.39  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||+|...+.++
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            468899999999999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.026  Score=45.46  Aligned_cols=22  Identities=14%  Similarity=0.302  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|.|+|.+|+|||+|.+.+.++
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.12  E-value=0.022  Score=45.87  Aligned_cols=21  Identities=19%  Similarity=0.335  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||||...+.++
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            678999999999999988754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.03  Score=44.89  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||+|..++.++
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.024  Score=45.61  Aligned_cols=21  Identities=29%  Similarity=0.232  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||+|++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            678999999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.93  E-value=0.03  Score=45.40  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ....|+|+|.+|+|||||...+.+.
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3467999999999999999999864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.029  Score=45.18  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||+|...+.++
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999988764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.92  E-value=0.045  Score=46.54  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=27.7

Q ss_pred             ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..++.|.++|..     ++.+++|.+|+|||||...+..+
T Consensus        84 ~g~~~L~~~l~~-----kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          84 MGIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             TTHHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hhHhhHHHHhcC-----CeEEEECCCCCCHHHHHHhhcch
Confidence            446778887742     46678899999999999999764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.03  Score=44.88  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .=|+|+|.+|+|||+|...+.++
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            34678999999999999998754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.03  Score=45.05  Aligned_cols=21  Identities=10%  Similarity=0.230  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||+|+.++.++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.025  Score=45.73  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|.|+|.+|+|||+|...+.++
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4669999999999999988764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.86  E-value=0.025  Score=44.47  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||||...+.+.
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999998763

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.053  Score=45.19  Aligned_cols=22  Identities=18%  Similarity=0.078  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +.|+|-|+.|+||||+++.+.+
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999876

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.81  E-value=0.031  Score=45.05  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -+..|+|+|.+|+|||||..++.+
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHhC
Confidence            356789999999999999999985

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.033  Score=47.30  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .++|..|.|.-|+|||||.+++...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            5789999999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.80  E-value=0.029  Score=44.85  Aligned_cols=21  Identities=10%  Similarity=0.333  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||||..++.++
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.032  Score=44.68  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||+|...+.++
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.033  Score=44.66  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||+|..++..+
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            578999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.031  Score=45.25  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|.+|+|||||+..+.++
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999988664

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.033  Score=44.96  Aligned_cols=21  Identities=10%  Similarity=0.251  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||||+.++..+
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999988654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.69  E-value=0.028  Score=46.64  Aligned_cols=23  Identities=13%  Similarity=0.081  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +.|+|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47889999999999999999764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.68  E-value=0.032  Score=46.03  Aligned_cols=21  Identities=10%  Similarity=0.306  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||||...+.++
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            678999999999999988764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.61  E-value=0.031  Score=44.96  Aligned_cols=24  Identities=21%  Similarity=0.063  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..+ |.|+|.+|+|||||..++..+
T Consensus        15 ~~k-I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHK-VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEE-EEEEESTTSSHHHHHHHHHTT
T ss_pred             eEE-EEEECCCCCCHHHHHHHHhcC
Confidence            344 668999999999999988764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.61  E-value=0.052  Score=45.74  Aligned_cols=36  Identities=19%  Similarity=0.083  Sum_probs=25.5

Q ss_pred             eEEEEE-cCCCCchHHHHHHhhcccCcccccCeEEEEEc
Q 015752          210 SVVAIL-DSGGFDKTAFAADTYNNNHVKFYFDCHAWVRV  247 (401)
Q Consensus       210 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v  247 (401)
                      ++|+|+ +-||+||||+|..++.  .....-..++-+..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~--~la~~g~~VlliD~   39 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSV--ALGDRGRKVLAVDG   39 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHH--HHHhCCCCEEEEeC
Confidence            689999 6699999999999876  33333334555553

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.50  E-value=0.077  Score=44.56  Aligned_cols=23  Identities=17%  Similarity=0.046  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -+.|+|-|+-|+||||+++.+.+
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999999987

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.041  Score=44.18  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|.+|+|||+|+.++.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.41  E-value=0.038  Score=44.36  Aligned_cols=21  Identities=14%  Similarity=0.271  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+|+|.+|+|||+|..++.++
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568899999999999988764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.2  Score=42.64  Aligned_cols=110  Identities=14%  Similarity=0.105  Sum_probs=56.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhccc---Cc-------c---cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccC
Q 015752          209 LSVVAILDSGGFDKTAFAADTYNNN---HV-------K---FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIG  275 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~-------~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~  275 (401)
                      -+++.|.|+...||||+.+.+.-..   +.       .   ..|+ .++..+...-++..-..              .+.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d-~I~~~~~~~d~~~~~~S--------------~F~  105 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPID-RIFTRVGAADDLASGRS--------------TFM  105 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCC-EEEEEEC-------------------------CH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccch-hheeEEccCcccccchh--------------HHH
Confidence            4678899999999999999885321   01       1   1122 23333333222111000              011


Q ss_pred             cCHHHHHHHHHHHcCCceEEEEEeCCCC--Cchh-----HHHHHhhCCCCCCCcEEEEecCChhHHhhc
Q 015752          276 EDYQLKKSILRDYLTNKKYFIVLDDVFD--DSEI-----WIDVEELLPDDENGSRVFITVTDPDLLASL  337 (401)
Q Consensus       276 ~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~-----~~~l~~~l~~~~~gs~iivTTR~~~v~~~~  337 (401)
                      .+..++...+..  .+++.|+++|.+..  ++.+     |.-+ ..+. ...++.+|+||....+....
T Consensus       106 ~E~~~~~~il~~--~~~~sLvliDE~~~gT~~~eg~~l~~a~l-~~l~-~~~~~~~i~tTH~~~l~~~~  170 (234)
T d1wb9a2         106 VEMTETANILHN--ATEYSLVLMDEIGRGTSTYDGLSLAWACA-ENLA-NKIKALTLFATHYFELTQLP  170 (234)
T ss_dssp             HHHHHHHHHHHH--CCTTEEEEEESCCCCSSSSHHHHHHHHHH-HHHH-HTTCCEEEEECSCGGGGGHH
T ss_pred             HHHHHHHHHHHh--cccccEEeecccccCCChhhhhHHHHHhh-hhhh-ccccceEEEecchHHHhhhh
Confidence            123333332222  46789999999987  3221     2222 2221 12467899999988765543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.37  E-value=0.023  Score=46.24  Aligned_cols=20  Identities=15%  Similarity=0.165  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |+|+|.+|+|||||...+.+
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.31  E-value=0.027  Score=45.90  Aligned_cols=21  Identities=10%  Similarity=0.085  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -|+|+|.+++|||||...+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.31  E-value=0.04  Score=44.28  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|.|+|.+|+|||+|..++.++
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.30  E-value=0.035  Score=46.16  Aligned_cols=23  Identities=13%  Similarity=0.030  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +-|+|+|.+|+|||||..++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.04  Score=44.87  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|.|+|.+|+|||+|..++..+
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3678999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.23  E-value=0.048  Score=49.97  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ....+..+|+.|+|||.||+.++.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            455678889999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.041  Score=44.50  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||+|...+.++
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568899999999999988764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.18  E-value=0.038  Score=47.14  Aligned_cols=22  Identities=9%  Similarity=-0.043  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+|+|+|..|+||||+|+.+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.18  E-value=0.034  Score=45.07  Aligned_cols=22  Identities=5%  Similarity=0.078  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .|+|+|.+|+|||||...+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999863

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.041  Score=44.97  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||+|..++.++
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            778999999999999998765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.15  E-value=0.065  Score=46.44  Aligned_cols=40  Identities=15%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             ccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          193 RGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       193 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      ..+.++...+.......-.|+|+|.+|+|||||...++..
T Consensus        16 ~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            3445566666655445567889999999999999999864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.13  E-value=0.041  Score=44.78  Aligned_cols=21  Identities=14%  Similarity=0.166  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||+|..++..+
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            568899999999999988654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.95  E-value=0.046  Score=43.93  Aligned_cols=21  Identities=19%  Similarity=0.556  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||+|..++.++
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.88  E-value=0.047  Score=44.44  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||||+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.041  Score=44.39  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -|.++|.+|+|||+|...+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367899999999999998864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=91.84  E-value=0.073  Score=42.73  Aligned_cols=33  Identities=9%  Similarity=0.104  Sum_probs=23.9

Q ss_pred             HHHHhcCCCCceEEEEEcCCCCchHHHHHHhhccc
Q 015752          199 FDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       199 ~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      .+.+.+ ...++ |.++|.+|+|||||..++.++.
T Consensus         4 ~~~~~~-~k~~k-IvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_           4 LSKIFG-NKEMR-ILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             HHHHHT-TCCEE-EEEEEETTSSHHHHHHHTTCCC
T ss_pred             hhhhhC-CCeEE-EEEECCCCCCHHHHHHHHhcCC
Confidence            344443 34566 5588999999999999997643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.03  Score=45.18  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||+|..++.++
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            668899999999999988664

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.78  E-value=0.04  Score=45.23  Aligned_cols=18  Identities=22%  Similarity=0.445  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchHHHHHHh
Q 015752          212 VAILDSGGFDKTAFAADT  229 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v  229 (401)
                      |.|+|.+|+|||||..++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            568999999999999988

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.78  E-value=0.054  Score=43.11  Aligned_cols=21  Identities=14%  Similarity=0.097  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||||..++..+
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            568899999999999988654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.046  Score=44.03  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|.|+|.+|+|||||...+.++
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3779999999999999887654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.77  E-value=0.049  Score=44.27  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|..|+|||+|++.+.++
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.055  Score=43.73  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||+|..++.++
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999988654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.052  Score=44.52  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||+|..++.++
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568899999999999888764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.40  E-value=0.11  Score=41.50  Aligned_cols=26  Identities=15%  Similarity=0.069  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhccc
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNN  233 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~  233 (401)
                      .-.+|.+.|.=|+||||+++.+++..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            44689999999999999999998753

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.39  E-value=0.27  Score=41.43  Aligned_cols=105  Identities=20%  Similarity=0.180  Sum_probs=56.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhccc---Cc-------c---cccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNNN---HV-------K---FYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGE  276 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~~---~~-------~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~  276 (401)
                      .++.|.|+...||||+.+.+.--.   +.       .   ..|+ .++..+...-++..                 +.+ 
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d-~I~~~~~~~d~~~~-----------------~~S-   96 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFD-GIYTRIGASDDLAG-----------------GKS-   96 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCS-EEEEECCC-----------------------CCS-
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecc-eEEEEECCCccccC-----------------Ccc-
Confidence            378899999999999998874321   11       0   1122 23333333222110                 011 


Q ss_pred             CHHHHHHHHHHHc--CCceEEEEEeCCCC--Cch-----hHHHHHhhCCCCCCCcEEEEecCChhHHhh
Q 015752          277 DYQLKKSILRDYL--TNKKYFIVLDDVFD--DSE-----IWIDVEELLPDDENGSRVFITVTDPDLLAS  336 (401)
Q Consensus       277 ~~~~l~~~l~~~L--~~kr~LlVlDdv~~--~~~-----~~~~l~~~l~~~~~gs~iivTTR~~~v~~~  336 (401)
                      ....-...+...+  .+++.|+++|.+..  ++.     .|. +...|.  ..++.+++||...++...
T Consensus        97 tF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~a-ile~L~--~~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2          97 TFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATA-VAEALH--ERRAYTLFATHYFELTAL  162 (224)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHH-HHHHHH--HHTCEEEEECCCHHHHTC
T ss_pred             HHHHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHH-HHHHHh--hcCcceEEeeechhhhhh
Confidence            2222233333333  36889999999987  322     222 223332  236789999999887654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.05  Score=42.98  Aligned_cols=20  Identities=15%  Similarity=0.097  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchHHHHHHhhc
Q 015752          212 VAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~  231 (401)
                      |+|+|.+|+|||||..++..
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            56999999999999998864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.06  Score=43.67  Aligned_cols=22  Identities=9%  Similarity=0.144  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+++|.+|+|||+|...+.++
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4678999999999999988664

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.79  E-value=0.05  Score=43.79  Aligned_cols=25  Identities=16%  Similarity=-0.024  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+..-|+|+|.+++|||||..++..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456789999999999999998865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.74  E-value=0.061  Score=43.60  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -|+|+|.+|+|||||...+.+.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999888753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.53  E-value=0.062  Score=43.81  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.++|.+|+|||+|..++..+
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            568899999999999988653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.44  E-value=0.055  Score=50.94  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      =|.++|+.|+|||.||+.++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            466889999999999999987

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.08  E-value=0.046  Score=44.04  Aligned_cols=21  Identities=14%  Similarity=0.248  Sum_probs=8.1

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |.|+|.+|+|||||...+.++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999877653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.83  E-value=0.081  Score=44.23  Aligned_cols=41  Identities=15%  Similarity=0.082  Sum_probs=26.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCC
Q 015752          208 GLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSL  249 (401)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~  249 (401)
                      .-.++.|.|.+|+|||+||.+++... ....-..+.|++...
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~~-~~~~~~~~~~~s~e~   65 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYNG-IIEFDEPGVFVTFEE   65 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCcccccccC
Confidence            34688899999999999997765321 112223466666544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.82  E-value=0.077  Score=44.74  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -|.++|.+|+|||||.+++..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            467899999999999998754

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.1  Score=43.08  Aligned_cols=22  Identities=9%  Similarity=0.030  Sum_probs=18.7

Q ss_pred             eEEEEEcCC-CCchHHHHHHhhc
Q 015752          210 SVVAILDSG-GFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~g-GiGKTtLa~~v~~  231 (401)
                      +-+.|.|-| |+||||++..++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            457899998 9999998887776

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=88.89  E-value=0.1  Score=42.44  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-|.|.|.+|+||||||..+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4577899999999999998876

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.84  E-value=0.037  Score=43.76  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHhhcc
Q 015752          212 VAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       212 i~I~G~gGiGKTtLa~~v~~~  232 (401)
                      |+++|.+|+|||||...+...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999998753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.11  Score=44.94  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .+..|.|.+|+|||||+..++.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4677999999999999987765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=88.76  E-value=0.11  Score=42.29  Aligned_cols=22  Identities=27%  Similarity=0.290  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-+.|.|.+|+||||||..+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4577899999999999988875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.24  Score=43.26  Aligned_cols=35  Identities=17%  Similarity=0.110  Sum_probs=28.4

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcc
Q 015752          198 LFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       198 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      .++.|..-++.+.||+|+|+-+.|||+|...++..
T Consensus        21 ~l~~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          21 ALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            34555554567999999999999999999999863

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=87.90  E-value=0.13  Score=41.51  Aligned_cols=22  Identities=23%  Similarity=0.222  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCchHHHHHHhhc
Q 015752          210 SVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .-|.|.|.+|+||||||..+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4577999999999999988776

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.62  E-value=0.24  Score=44.39  Aligned_cols=23  Identities=9%  Similarity=0.010  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +-.|.|-|.-|+||||+++.+.+
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            45788999999999999999988

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.19  E-value=0.15  Score=44.62  Aligned_cols=25  Identities=16%  Similarity=0.034  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHhhc
Q 015752          207 SGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ++++-|+|+|-+|.|||||+..+..
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHH
Confidence            3577899999999999999988853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=86.83  E-value=0.16  Score=45.47  Aligned_cols=105  Identities=12%  Similarity=0.081  Sum_probs=55.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHcC
Q 015752          211 VVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPPSRVSVIIGEDYQLKKSILRDYLT  290 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~  290 (401)
                      -|.|.|..|+||||+.+.+..  .+...- .+  +++......         .+........-.....-...+.++..|+
T Consensus       168 nili~G~tgSGKTT~l~al~~--~i~~~~-ri--vtiEd~~El---------~l~~~~~~~~~~~~~~~~~~~ll~~~lR  233 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIME--FIPKEE-RI--ISIEDTEEI---------VFKHHKNYTQLFFGGNITSADCLKSCLR  233 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG--GSCTTC-CE--EEEESSCCC---------CCSSCSSEEEEECBTTBCHHHHHHHHTT
T ss_pred             CEEEEeeccccchHHHHHHhh--hccccc-ce--eeccchhhh---------hcccccccceeccccchhHHHHHHHHhc
Confidence            367899999999999999987  332211 12  222222210         0000000000000011123455677787


Q ss_pred             CceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhH
Q 015752          291 NKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDL  333 (401)
Q Consensus       291 ~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v  333 (401)
                      ..+=.||+..+.+ .+.|+-+. ++..+..|  ++-|....+.
T Consensus       234 ~~pd~iivgEiR~-~ea~~~l~-a~~tGh~g--~~tT~Ha~s~  272 (323)
T d1g6oa_         234 MRPDRIILGELRS-SEAYDFYN-VLCSGHKG--TLTTLHAGSS  272 (323)
T ss_dssp             SCCSEEEESCCCS-THHHHHHH-HHHTTCSC--EEEEECCSSH
T ss_pred             cCCCcccCCccCc-hhHHHHHH-HHHhcCCc--EEEEECCCCH
Confidence            7777899999988 88887554 43333233  4555554443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.25  E-value=0.2  Score=42.22  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      .++|+|+|-++.|||||+..+..
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHh
Confidence            35799999999999999988854

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=85.96  E-value=0.62  Score=42.74  Aligned_cols=122  Identities=12%  Similarity=0.050  Sum_probs=62.8

Q ss_pred             ccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCC--HHHHHHHHHHHcCC
Q 015752          189 SHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYD--FRRILDDIIKSVIP  266 (401)
Q Consensus       189 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~  266 (401)
                      .|......+.++.+..  ....+|.|.|+.|+||||....+.+.  +...-..+  +++..+..  ...+     .|.  
T Consensus       140 LG~~~~~~~~l~~l~~--~~~GliLvtGpTGSGKSTTl~~~l~~--~~~~~~~i--~tiEdPiE~~~~~~-----~q~--  206 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQE--LNSSERNI--LTVEDPIEFDIDGI-----GQT--  206 (401)
T ss_dssp             SCCCHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHH--HCCTTSCE--EEEESSCCSCCSSS-----EEE--
T ss_pred             hcccHHHHHHHHHHHh--hhhceEEEEcCCCCCccHHHHHHhhh--hcCCCceE--EEeccCcccccCCC-----Cee--
Confidence            4554444334444443  34578999999999999988777662  21111112  34433321  0000     000  


Q ss_pred             CCCCccccCc-CHHHHHHHHHHHcCCceEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChhH
Q 015752          267 PSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDDSEIWIDVEELLPDDENGSRVFITVTDPDL  333 (401)
Q Consensus       267 ~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v  333 (401)
                            .... +...-...++..|+..+=.|++.++.+ .+.-.....+   ...|-.|+-|-...+.
T Consensus       207 ------~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd-~~ta~~a~~a---a~tGhlV~tTlHa~~a  264 (401)
T d1p9ra_         207 ------QVNPRVDMTFARGLRAILRQDPDVVMVGEIRD-LETAQIAVQA---SLTGHLVMSTLHTNTA  264 (401)
T ss_dssp             ------ECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS-HHHHHHHHHH---HHTTCEEEEEECCSSS
T ss_pred             ------eecCCcCCCHHHHHHHHHhhcCCEEEecCcCC-hHHHHHHHHH---HhcCCeEEEEeccCch
Confidence                  0011 122244556777777777888888877 5433333222   2245566666555443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=85.84  E-value=0.27  Score=40.59  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          195 REELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       195 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..+..+|. +.++-..+.++|+++.|||++|..+.+
T Consensus        40 l~~l~~~l~-~~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          40 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCceEEEEECCCCccHHHHHHHHHH
Confidence            455666664 445567889999999999999988876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=85.61  E-value=0.2  Score=40.36  Aligned_cols=21  Identities=14%  Similarity=0.088  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHhhc
Q 015752          211 VVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      -|+|+|.+++|||||..++..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999999875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.24  E-value=0.42  Score=41.36  Aligned_cols=36  Identities=8%  Similarity=0.041  Sum_probs=27.8

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhc
Q 015752          196 EELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       196 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      ..+..+|....+.-..+.++|+|+.|||+++..+.+
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            344555655545667888999999999999998876

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=85.03  E-value=0.25  Score=42.89  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHhh
Q 015752          209 LSVVAILDSGGFDKTAFAADTY  230 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~  230 (401)
                      ++-|+|+|-.|.|||||+..+.
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHH
Confidence            4678999999999999998883

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=83.95  E-value=0.35  Score=43.24  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHhhcc
Q 015752          210 SVVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       210 ~vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      -.|+|-|.-|+||||+++.+.+.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999873

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=83.82  E-value=0.12  Score=43.96  Aligned_cols=22  Identities=9%  Similarity=0.167  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchHHHHHHhhcc
Q 015752          211 VVAILDSGGFDKTAFAADTYNN  232 (401)
Q Consensus       211 vi~I~G~gGiGKTtLa~~v~~~  232 (401)
                      +..++|.+|+|||||...+..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4468899999999999999864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=82.90  E-value=0.28  Score=43.89  Aligned_cols=23  Identities=26%  Similarity=0.094  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHhhc
Q 015752          209 LSVVAILDSGGFDKTAFAADTYN  231 (401)
Q Consensus       209 ~~vi~I~G~gGiGKTtLa~~v~~  231 (401)
                      +..|+|-|.=|+||||+++.+.+
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            45689999999999999999976

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.04  E-value=8.8  Score=30.75  Aligned_cols=116  Identities=14%  Similarity=0.108  Sum_probs=53.9

Q ss_pred             cccccccHHHHHHHHhcCCCCceEEEEEcCCCCchHHHHHHhhcccCcccccCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Q 015752          188 ISHFERGREELFDLLIEGSSGLSVVAILDSGGFDKTAFAADTYNNNHVKFYFDCHAWVRVSLDYDFRRILDDIIKSVIPP  267 (401)
Q Consensus       188 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~  267 (401)
                      +--|+-..+.+.. +...  + +. .|+++.|.|||.+|..+...  .    ...+.+-+... .+..-..+-+..++..
T Consensus        69 ~~Lr~yQ~eav~~-~~~~--~-~~-ll~~~tG~GKT~~a~~~~~~--~----~~~~Liv~p~~-~L~~q~~~~~~~~~~~  136 (206)
T d2fz4a1          69 ISLRDYQEKALER-WLVD--K-RG-CIVLPTGSGKTHVAMAAINE--L----STPTLIVVPTL-ALAEQWKERLGIFGEE  136 (206)
T ss_dssp             CCCCHHHHHHHHH-HTTT--S-EE-EEEESSSTTHHHHHHHHHHH--S----CSCEEEEESSH-HHHHHHHHHHGGGCGG
T ss_pred             CCcCHHHHHHHHH-HHhC--C-Cc-EEEeCCCCCceehHHhHHHH--h----cCceeEEEccc-chHHHHHHHHHhhccc
Confidence            3345544444444 4332  2 33 36688999999988877752  2    22233323221 1222122222333221


Q ss_pred             CC-----Cc---cccCc-CHHHHHHHHHHHcCCceEEEEEeCCCC-CchhHHHHHhhCC
Q 015752          268 SR-----VS---VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-DSEIWIDVEELLP  316 (401)
Q Consensus       268 ~~-----~~---~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~l~~~l~  316 (401)
                      ..     ..   ....- ....+...... +.++--+||+|.+++ ....|..+...++
T Consensus       137 ~~~~~~~~~~~~~~i~i~t~~~~~~~~~~-~~~~~~lvIiDEaH~~~a~~~~~i~~~~~  194 (206)
T d2fz4a1         137 YVGEFSGRIKELKPLTVSTYDSAYVNAEK-LGNRFMLLIFDEVHHLPAESYVQIAQMSI  194 (206)
T ss_dssp             GEEEESSSCBCCCSEEEEEHHHHHHTHHH-HTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred             chhhcccccccccccccceehhhhhhhHh-hCCcCCEEEEECCeeCCcHHHHHHHhccC
Confidence            00     00   01111 33333333333 233334899999987 3456777776553