Citrus Sinensis ID: 015774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
Protein Sequence
MHLDSGHGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRYAYQYHKQR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHcccccccEEEccccccHHHHHHcccccHHHHHHHHHccccccccEEEEEEEEEEcHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccHEEEcccccHHHHHHHHHHHHHHcccccccHcHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccEEEHcccccccHHHHHHHHccccccccccEEEEEEEEEccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MHLDSGHGKAIISHIAAASFVGAFAAAASHYRRQKykyhmgnqdiaplldrtesgrvgnlerFSHYVARqmgfddtnecpQLCKLAYEYLKKSKGCEDNIYEYfskeaepeSLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGeshctdvmvpaalserspvlllmgggmgagksTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALsskghhddmLQTAELVHQSSTDAASSLLVTALNEgrdvimdgtlswvpFVEQTIAMARNVHKSryrmgvgykvnedGTVIENYWEQVKEGEEDYQQKenrqvfsrkpyrIELVGVVCDAYLAVVRGIRYAYQYHKQR
Flexible Loop (DISEMBL)
MHLDSGHGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQrfekvtkdlkmkrVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEedyqqkenrqvfsrkpyrieLVGVVCDAYLAVVRGIRYAYQYHKQR
Low Complexity Region (SEG)
MHLDSGHGKAIISHIaaasfvgafaaaasHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVlllmgggmgagKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRYAYQYHKQR
Disordered region (IsUnstruct)
********KAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS**********************SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVK************QVFSRKPYRIELVGVVCDAYLAVVRGIRYAYQY****
Disordered Region (DISOPRED)
***********ISHIAAASFVGAFAAAASHYRRQK*********IA**LDR*****VGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEM*************************VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK****DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQ*********************YRIELVGVVCDAYLAVVRGIRYAYQYH***
Disordered Region (DISEMBL)
********KAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRYAYQYHKQR
Disordered Region (DISPRO)
*****GHGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQ**E*RQVFSRKPYRIELVGVVCDAYLAVVRGIRYAYQYH***
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLDSGHGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRYAYQYHKQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
357441011	520	hypothetical protein MTR_1g075200 [Medic	0.962	0.740	0.709	1e-155
356576489	523	PREDICTED: uncharacterized protein LOC10	0.975	0.745	0.709	1e-154
388494102	480	unknown [Medicago truncatula]	0.962	0.802	0.709	1e-154
297737168	1388	unnamed protein product [Vitis vinifera]	0.967	0.278	0.727	1e-151
359477383	893	PREDICTED: uncharacterized protein LOC10	0.96	0.430	0.733	1e-151
225432931	526	PREDICTED: uncharacterized protein LOC10	0.967	0.735	0.735	1e-148
449518501	572	PREDICTED: uncharacterized protein LOC10	0.942	0.659	0.668	1e-146
255559959	509	conserved hypothetical protein [Ricinus	0.942	0.740	0.660	1e-145
225437257	536	PREDICTED: uncharacterized protein LOC10	0.927	0.692	0.680	1e-145
357441017	511	hypothetical protein MTR_1g075250 [Medic	0.942	0.737	0.657	1e-144

>gi|357441011|ref|XP_003590783.1| hypothetical protein MTR_1g075200 [Medicago truncatula] gi|355479831|gb|AES61034.1| hypothetical protein MTR_1g075200 [Medicago truncatula]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/392 (70%), Positives = 325/392 (82%), Gaps = 7/392 (1%)

Query: 6   GHGKAI-ISHIAAASFVGAFAAAA-SHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERF 63
           G GKAI ++H+ AASF G  AAAA S YR+Q+    + +  I P +DRTESGR+  +E+F
Sbjct: 5   GIGKAIRLTHVLAASFAGLIAAAAASRYRKQESTV-VTDDKIIPHVDRTESGRLEKIEKF 63

Query: 64  SHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDR 123
           SHYVARQ+GF+D +E P+LCKLA EYL+KSKGC+ +I+EY   E + ESLYVKLV EF++
Sbjct: 64  SHYVARQIGFEDASEVPELCKLAQEYLQKSKGCDQSIFEYLGNEKDYESLYVKLVNEFEK 123

Query: 124 CILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTL 183
           CILSYF FHW  A  +ISQ+L  ES+ KTKLK+ ++AATRKQRFE+VTK+LK+ RVFSTL
Sbjct: 124 CILSYFAFHWKQAPFVISQILKTESQHKTKLKEILLAATRKQRFERVTKNLKVTRVFSTL 183

Query: 184 VEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243
           VEEMK I   G S   +VMVP  LSER+PVLL MGGGMGAGKSTVLKDI+KESFW GAA+
Sbjct: 184 VEEMKVING-GVSQTKEVMVPMPLSERNPVLLFMGGGMGAGKSTVLKDILKESFWLGAAS 242

Query: 244 NAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIM 303
            AVVVEADAFKE DVIY+AL+S+GHHDDMLQTAELVHQSSTDAASSLLV ALN+GRDVIM
Sbjct: 243 KAVVVEADAFKENDVIYKALNSRGHHDDMLQTAELVHQSSTDAASSLLVAALNKGRDVIM 302

Query: 304 DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR 363
           DGTLSW PFVEQTIAMARNVHK +YRMGVGYKV  DGT+ ENYWEQV EGEE +QQ+EN 
Sbjct: 303 DGTLSWEPFVEQTIAMARNVHKHKYRMGVGYKVAADGTINENYWEQVNEGEE-HQQEENS 361

Query: 364 --QVFSRKPYRIELVGVVCDAYLAVVRGIRYA 393
             ++ S+KPYRIELVGVVCD YLAV+RGIR A
Sbjct: 362 TGELHSQKPYRIELVGVVCDGYLAVIRGIRRA 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576489|ref|XP_003556363.1| PREDICTED: uncharacterized protein LOC100796923 [Glycine max]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/399 (70%), Positives = 326/399 (81%), Gaps = 9/399 (2%)

Query: 1   MHLDSGHGKAI-ISHIAAASFVGAFAAAASHYRRQKYKYHMGNQD-IAPLLDRTESGRVG 58
           M  DS  GK    +H+ AASF G  AAAA+   R+     +G Q  + P L RTESGR+G
Sbjct: 1   MDQDSSIGKVFKFTHVLAASFAGLVAAAAASSYRRAPSTVVGEQKKVIPELRRTESGRLG 60

Query: 59  NLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKE--AEPESLYVK 116
            +E+FSHYVARQMGF+D +E P+LC LA EYLKKSKGC+++I+EY S       +SLY K
Sbjct: 61  EIEKFSHYVARQMGFEDADEVPELCILAQEYLKKSKGCDESIFEYISSGNVENTDSLYAK 120

Query: 117 LVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKM 176
           LVEE +RCILSY  FHW+ A+ +ISQVL VES++K KLK  ++AATR+QRF++VTK+LK+
Sbjct: 121 LVEELERCILSYLAFHWNQATSVISQVLGVESQQKKKLKGILLAATREQRFDRVTKNLKV 180

Query: 177 KRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236
            RV STLVEEMKAI   G+S CT+VMVP A SERSPVLL MGGGMGAGKSTVLKDI+KES
Sbjct: 181 TRVISTLVEEMKAIN--GDSQCTEVMVPMAHSERSPVLLFMGGGMGAGKSTVLKDILKES 238

Query: 237 FWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALN 296
           FWSGAA+NAVVVEADAFKE+DVIYRALSS+GHHDDMLQTAELVHQSSTDAASSLLVTALN
Sbjct: 239 FWSGAASNAVVVEADAFKESDVIYRALSSRGHHDDMLQTAELVHQSSTDAASSLLVTALN 298

Query: 297 EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEED 356
           EGRDVIMDGTLSW PFVEQTIAMARNVHK RYRMGVGYKV EDGT+ ENYWEQV + EE 
Sbjct: 299 EGRDVIMDGTLSWEPFVEQTIAMARNVHKHRYRMGVGYKVAEDGTITENYWEQVNDAEE- 357

Query: 357 YQQKE--NRQVFSRKPYRIELVGVVCDAYLAVVRGIRYA 393
           +Q +E  N +  ++KPYRIELVGVVCD YLAVVRGIR A
Sbjct: 358 HQSEEISNGEAHTQKPYRIELVGVVCDGYLAVVRGIRRA 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494102|gb|AFK35117.1| unknown [Medicago truncatula]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/392 (70%), Positives = 325/392 (82%), Gaps = 7/392 (1%)

Query: 6   GHGKAI-ISHIAAASFVGAFAAAA-SHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERF 63
           G GKAI ++H+ AASF G  AAAA S YR+Q+    + +  I P +DRTESGR+  +E+F
Sbjct: 5   GIGKAIRLTHVLAASFAGLIAAAAASRYRKQESTV-VTDDKIIPHVDRTESGRLEKIEKF 63

Query: 64  SHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDR 123
           SHYVARQ+GF+D +E P+LCKLA EYL+KSKGC+ +I+EY   E + ESLYVKLV EF++
Sbjct: 64  SHYVARQIGFEDASEVPELCKLAQEYLQKSKGCDQSIFEYLGNEKDYESLYVKLVNEFEK 123

Query: 124 CILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTL 183
           CILSYF FHW  A  +ISQ+L  ES+ KTKLK+ ++AATRKQRFE+VTK+LK+ RVFSTL
Sbjct: 124 CILSYFAFHWKQAPFVISQILKTESQHKTKLKEILLAATRKQRFERVTKNLKVTRVFSTL 183

Query: 184 VEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243
           VEEMK I   G S   +VMVP  LSER+PVLL MGGGMGAGKSTVLKDI+KESFW GAA+
Sbjct: 184 VEEMKVING-GVSQTKEVMVPMPLSERNPVLLFMGGGMGAGKSTVLKDILKESFWLGAAS 242

Query: 244 NAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIM 303
            AVVVEADAFKE DVIY+AL+S+GHHDDMLQTAELVHQSSTDAASSLLV ALN+GRDVIM
Sbjct: 243 KAVVVEADAFKENDVIYKALNSRGHHDDMLQTAELVHQSSTDAASSLLVAALNKGRDVIM 302

Query: 304 DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR 363
           DGTLSW PFVEQTIAMARNVHK +YRMGVGYKV  DGT+ ENYWEQV EGEE +QQ+EN 
Sbjct: 303 DGTLSWEPFVEQTIAMARNVHKHKYRMGVGYKVAADGTINENYWEQVNEGEE-HQQEENS 361

Query: 364 --QVFSRKPYRIELVGVVCDAYLAVVRGIRYA 393
             ++ S+KPYRIELVGVVCD YLAV+RGIR A
Sbjct: 362 TGELHSQKPYRIELVGVVCDGYLAVIRGIRRA 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737168|emb|CBI26369.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/393 (72%), Positives = 325/393 (82%), Gaps = 6/393 (1%)

Query: 7   HGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHY 66
           HGK I++ + A+S +G    AA HYRR+K      +   AP L RT SGRVG +ERF+HY
Sbjct: 26  HGKVILTLLLASS-LGFMVKAAIHYRRRKINPE-NDLSFAPRLVRTGSGRVGKIERFAHY 83

Query: 67  VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCIL 126
           VARQMGF D +ECP+ CKLAY+YLKKSKGC+ NIYEYFS   + +SLY+KLVEEF+RCIL
Sbjct: 84  VARQMGFPDPDECPRFCKLAYDYLKKSKGCDQNIYEYFSSLTDAKSLYMKLVEEFERCIL 143

Query: 127 SYFTFHWSHASLMISQVLSVES-EKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE 185
           SYF FHWS AS MI+QVLSVES E+KTK+KD +MAATRKQRFEKVT+DLK+ RVF TL+E
Sbjct: 144 SYFAFHWSQASFMINQVLSVESDEQKTKIKDLVMAATRKQRFEKVTRDLKVTRVFHTLLE 203

Query: 186 EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245
           EMKAI     S CT+VM+P ALSERSPVLLLMGGG GAGKSTVLK+IMK++FWSGA  N 
Sbjct: 204 EMKAIGVAPSSGCTEVMMPVALSERSPVLLLMGGGAGAGKSTVLKEIMKDAFWSGAEANC 263

Query: 246 VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305
           VVVEADAFKETDV+YRALSS  HH DMLQTAELVHQSST+AASSLLV ALNEGRDV+MDG
Sbjct: 264 VVVEADAFKETDVVYRALSS--HHHDMLQTAELVHQSSTNAASSLLVAALNEGRDVVMDG 321

Query: 306 TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
           TLSW PFV+QTIAMARNVHK RYRMGVGY V EDGTV ENYWE+V   EE+ QQKEN QV
Sbjct: 322 TLSWEPFVQQTIAMARNVHKRRYRMGVGYDVAEDGTVTENYWEEVPLEEEEEQQKENGQV 381

Query: 366 FSRKPYRIELVGVVCDAYLAVVRGIRYAYQYHK 398
            +RKPYRIELVGVVCD +LAVVRGIR A +  +
Sbjct: 382 -ARKPYRIELVGVVCDPFLAVVRGIRRAIETRR 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477383|ref|XP_002280328.2| PREDICTED: uncharacterized protein LOC100249459 [Vitis vinifera]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/390 (73%), Positives = 324/390 (83%), Gaps = 6/390 (1%)

Query: 7   HGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHY 66
           HGK I++ + A+S +G    AA HYRR+K      +   AP L RT SGRVG +ERF+HY
Sbjct: 26  HGKVILTLLLASS-LGFMVKAAIHYRRRKINPE-NDLSFAPRLVRTGSGRVGKIERFAHY 83

Query: 67  VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCIL 126
           VARQMGF D +ECP+ CKLAY+YLKKSKGC+ NIYEYFS   + +SLY+KLVEEF+RCIL
Sbjct: 84  VARQMGFPDPDECPRFCKLAYDYLKKSKGCDQNIYEYFSSLTDAKSLYMKLVEEFERCIL 143

Query: 127 SYFTFHWSHASLMISQVLSVES-EKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE 185
           SYF FHWS AS MI+QVLSVES E+KTK+KD +MAATRKQRFEKVT+DLK+ RVF TL+E
Sbjct: 144 SYFAFHWSQASFMINQVLSVESDEQKTKIKDLVMAATRKQRFEKVTRDLKVTRVFHTLLE 203

Query: 186 EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245
           EMKAI     S CT+VM+P ALSERSPVLLLMGGG GAGKSTVLK+IMK++FWSGA  N 
Sbjct: 204 EMKAIGVAPSSGCTEVMMPVALSERSPVLLLMGGGAGAGKSTVLKEIMKDAFWSGAEANC 263

Query: 246 VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305
           VVVEADAFKETDV+YRALSS  HH DMLQTAELVHQSST+AASSLLV ALNEGRDV+MDG
Sbjct: 264 VVVEADAFKETDVVYRALSS--HHHDMLQTAELVHQSSTNAASSLLVAALNEGRDVVMDG 321

Query: 306 TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
           TLSW PFV+QTIAMARNVHK RYRMGVGY V EDGTV ENYWE+V   EE+ QQKEN QV
Sbjct: 322 TLSWEPFVQQTIAMARNVHKRRYRMGVGYDVAEDGTVTENYWEEVPLEEEEEQQKENGQV 381

Query: 366 FSRKPYRIELVGVVCDAYLAVVRGIRYAYQ 395
            +RKPYRIELVGVVCD +LAVVRGIR A +
Sbjct: 382 -ARKPYRIELVGVVCDPFLAVVRGIRRAIE 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432931|ref|XP_002280282.1| PREDICTED: uncharacterized protein LOC100264865 [Vitis vinifera]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 289/393 (73%), Positives = 324/393 (82%), Gaps = 6/393 (1%)

Query: 7   HGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHY 66
           HGK I++ + A+S  G    AA HYRR+K      +   AP L RT SGRVG +ERF+HY
Sbjct: 7   HGKVILTLLLASSL-GLTVKAAIHYRRRKINPE-NDLSFAPRLVRTGSGRVGKIERFAHY 64

Query: 67  VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCIL 126
           VARQMGF D +ECP+ CKLAY+YLKKSKGC  NIYEYFS   + +SLY+KLVEEF+RC L
Sbjct: 65  VARQMGFPDPDECPRFCKLAYDYLKKSKGCNQNIYEYFSSLPDAKSLYIKLVEEFERCFL 124

Query: 127 SYFTFHWSHASLMISQVLSVES-EKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE 185
           SYF FHW+ AS MI+QVLSVES E+KTKLKDF+MAATRKQRFEKVTKDLK+KRVF TL+E
Sbjct: 125 SYFAFHWTQASFMINQVLSVESDEQKTKLKDFVMAATRKQRFEKVTKDLKVKRVFHTLLE 184

Query: 186 EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245
           EMKAI     S CT+VM+P ALSERSPVLLLMGGGMGAGKSTVLK+IMK++FWSGA  N 
Sbjct: 185 EMKAIGVARSSGCTEVMMPVALSERSPVLLLMGGGMGAGKSTVLKEIMKDAFWSGAEANC 244

Query: 246 VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305
           VVVEADAFKETDVIYRALSS  H  DMLQTAELVHQSST+AASSLLV ALNEGRDV+MDG
Sbjct: 245 VVVEADAFKETDVIYRALSS--HRHDMLQTAELVHQSSTNAASSLLVAALNEGRDVVMDG 302

Query: 306 TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
           TLSW PFV+QTIAMARNVHK RYRMGVGY V EDGTV ENYWE+V   EE+ QQKEN QV
Sbjct: 303 TLSWEPFVQQTIAMARNVHKRRYRMGVGYDVAEDGTVTENYWEEVPLEEEEEQQKENGQV 362

Query: 366 FSRKPYRIELVGVVCDAYLAVVRGIRYAYQYHK 398
            +RKPYRIELVGVVCD +LAVVRGIR A +  +
Sbjct: 363 -ARKPYRIELVGVVCDPFLAVVRGIRRAIETRR 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518501|ref|XP_004166280.1| PREDICTED: uncharacterized protein LOC101223662 [Cucumis sativus]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/389 (66%), Positives = 303/389 (77%), Gaps = 12/389 (3%)

Query: 8   GKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYV 67
            K  +  I  AS +G    AA HYR +K +     Q I P L  +++GRV  LE F HYV
Sbjct: 42  SKPSLGQIVWASSIGLIIVAAMHYRIRKLRV----QRIIPRLKVSDTGRVEKLESFPHYV 97

Query: 68  ARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILS 127
           ARQMGF D +ECP LCKLA EY+ KS+ CED+IY +FS E   +SL+VKLVEEF+RCILS
Sbjct: 98  ARQMGFKDIHECPHLCKLASEYIAKSEECEDDIYSFFSSELHADSLFVKLVEEFERCILS 157

Query: 128 YFTFHWSHASLMISQVLSVE-SEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEE 186
           YF FHW+   +MISQ+LS +  E K KL+  +MAATR+QRFE+VTK+LK+ RVF+TLVEE
Sbjct: 158 YFAFHWNQTDIMISQILSSDHQEPKKKLRSIVMAATREQRFERVTKNLKVARVFTTLVEE 217

Query: 187 MKA--IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244
           MKA  +    +S CT+VMVP A ++RSP+LL MGGGMGAGKSTVLKDI+KE FW GA  N
Sbjct: 218 MKAMGLASTDDSQCTEVMVPMAHADRSPMLLFMGGGMGAGKSTVLKDILKEPFWVGAGPN 277

Query: 245 AVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD 304
           AVV+EADAFKE+DVIYRAL+S GHH DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD
Sbjct: 278 AVVIEADAFKESDVIYRALNSTGHHHDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD 337

Query: 305 GTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 364
           GTLSWVPFV QTI MARNVH+ RYRMG GYKV +DGTV ENYWE++++ E D Q    R 
Sbjct: 338 GTLSWVPFVVQTITMARNVHRRRYRMGAGYKVGDDGTVTENYWERIEDQEPD-QVGGKR- 395

Query: 365 VFSRKPYRIELVGVVCDAYLAVVRGIRYA 393
              RKPYRIELVGVVCDAYLAV+RGIR A
Sbjct: 396 ---RKPYRIELVGVVCDAYLAVIRGIRRA 421

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559959|ref|XP_002520998.1| conserved hypothetical protein [Ricinus communis] gi|223539835|gb|EEF41415.1| conserved hypothetical protein [Ricinus communis]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/389 (66%), Positives = 304/389 (78%), Gaps = 12/389 (3%)

Query: 7   HGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHY 66
           + K   + I  AS +G F AAA HYR ++ K    N  I P L +   G+   LERFSHY
Sbjct: 6   NSKPTFTQIFIASSIGLFVAAAVHYRLRQRK----NWKIIPRLKQKAGGKTEKLERFSHY 61

Query: 67  VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCIL 126
           VARQMGF D  ECP LCKLA EY++KS+ CE++IY +F+ E E +SL+VKL+EEF+RCIL
Sbjct: 62  VARQMGFKDRRECPHLCKLAAEYIRKSESCEEDIYAFFADELEADSLFVKLLEEFERCIL 121

Query: 127 SYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEE 186
           SYF FHWSHA L++ QVLS ++E K K K  +MAATR+QRFE+VTK+LK+ RVF+TLVEE
Sbjct: 122 SYFAFHWSHADLILHQVLSADAEPKRKFKHIVMAATREQRFERVTKNLKVARVFNTLVEE 181

Query: 187 MKA--IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244
           MKA  +    +S CT+VM P A S+RSPVLL MGGGMGAGKSTVLKDI+KE FW+GAA N
Sbjct: 182 MKAMGLASNDDSQCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGN 241

Query: 245 AVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD 304
           AV++EADAFKE+DVIYRALSS+GH  DM+QTAELVHQSST+AASSLLVTALNEGRDVIMD
Sbjct: 242 AVIIEADAFKESDVIYRALSSRGHA-DMIQTAELVHQSSTNAASSLLVTALNEGRDVIMD 300

Query: 305 GTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 364
           GTLSW PFV QTI MARNVH+ RYRMG+GYK    GT+ ENYWEQ+   EE+    + R+
Sbjct: 301 GTLSWAPFVVQTITMARNVHRRRYRMGIGYKEESGGTITENYWEQM---EEEQPLLDGRK 357

Query: 365 VFSRKPYRIELVGVVCDAYLAVVRGIRYA 393
              RKPYRIELVGVVCDAYLAV RGIR A
Sbjct: 358 --KRKPYRIELVGVVCDAYLAVTRGIRRA 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437257|ref|XP_002275654.1| PREDICTED: uncharacterized protein LOC100249325 [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/388 (68%), Positives = 307/388 (79%), Gaps = 17/388 (4%)

Query: 8   GKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYV 67
           G +  + I  AS +G   AA  H+R ++         I P +  T++G+V  LERFSHYV
Sbjct: 7   GNSTFTQILIASVIGFIIAALMHFRFRRC------LKIVPHMKITDTGQV-KLERFSHYV 59

Query: 68  ARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILS 127
           ARQ+GF D  ECPQLCKLA +Y +KS+GCE+NIY +F  E + +SL++KLVEEF+RCI+S
Sbjct: 60  ARQIGFADRRECPQLCKLASDYARKSEGCEENIYTFFDTELDGDSLFIKLVEEFERCIIS 119

Query: 128 YFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEM 187
           YF FHWSHA LMISQ+L  E  KK KL+  +MAATR+QRFE+VTK+LK+ RVF+TLVEEM
Sbjct: 120 YFAFHWSHADLMISQILGTEDPKK-KLRSLVMAATRQQRFERVTKNLKVARVFNTLVEEM 178

Query: 188 KAIRREG--ESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245
           K IR     +S CTDVMVP A S RSPVLL MGGGMGAGKSTVLKDI+ E  WSGAA NA
Sbjct: 179 KVIRLAANDDSECTDVMVPVAHSNRSPVLLFMGGGMGAGKSTVLKDILAEPLWSGAAGNA 238

Query: 246 VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305
           V++EADAFKE+DVIY+ALSS+GHHD MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG
Sbjct: 239 VIIEADAFKESDVIYKALSSRGHHD-MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 297

Query: 306 TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
           TLSWVPFV QTI MARNVH+ RYRMGVGY+V EDGTV ENYWEQV+E +E    K+    
Sbjct: 298 TLSWVPFVVQTITMARNVHRRRYRMGVGYRVAEDGTVTENYWEQVEEEQEKVGGKK---- 353

Query: 366 FSRKPYRIELVGVVCDAYLAVVRGIRYA 393
             RKPYRIELVGVVCDAYLAV+RGIR A
Sbjct: 354 --RKPYRIELVGVVCDAYLAVIRGIRRA 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441017|ref|XP_003590786.1| hypothetical protein MTR_1g075250 [Medicago truncatula] gi|355479834|gb|AES61037.1| hypothetical protein MTR_1g075250 [Medicago truncatula]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/394 (65%), Positives = 307/394 (77%), Gaps = 17/394 (4%)

Query: 1   MHLDSGHGKAIISHIAAASFVGAFA-AAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGN 59
           M  D   GKAI     AAS  G  A A ASHYRRQ  K  + +Q I P +D+ +SGR+  
Sbjct: 1   MEQDGSIGKAI-RFTLAASLAGLTAVATASHYRRQTSKVGV-DQKIIPQVDKKQSGRLEK 58

Query: 60  LERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVE 119
           +E+FS YVARQ+GF+D +E P+LCKLA EYL+KSK C+ +IY Y + E + ESLYVKLV+
Sbjct: 59  IEKFSDYVARQIGFEDASEVPKLCKLAQEYLQKSKACDQSIYAYLANENDSESLYVKLVD 118

Query: 120 EFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRV 179
           EF+RCILSYF FHW  A  ++SQ LS++S  KT+LK+ ++AATRKQRFE+VTK+LK+ RV
Sbjct: 119 EFERCILSYFAFHWKQAPYVVSQALSIDSPPKTRLKEIVLAATRKQRFERVTKNLKVTRV 178

Query: 180 FSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS 239
           FSTLVEE+K I    E     VMVP ALSERSPVLL MGGGMGAGKS+VLKDI+KESFWS
Sbjct: 179 FSTLVEELKTINVGKE-----VMVPMALSERSPVLLFMGGGMGAGKSSVLKDILKESFWS 233

Query: 240 GAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGR 299
           GA +  VVVEADAFKE+DVIY+AL ++GH+DDML TAE VH+SSTDAASS+LVTALN+GR
Sbjct: 234 GADSKPVVVEADAFKESDVIYKALHNRGHYDDMLLTAEYVHKSSTDAASSVLVTALNKGR 293

Query: 300 DVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQ 359
           DVIMDGTLSW PF EQTIAMARNVHK +YRMGVGY+ +EDGT+ ENYWEQV E EE + Q
Sbjct: 294 DVIMDGTLSWEPFFEQTIAMARNVHKYKYRMGVGYRPDEDGTITENYWEQVNEAEEHHTQ 353

Query: 360 KENRQVFSRKPYRIELVGVVCDAYLAVVRGIRYA 393
                    KPYRIELVGVVCD Y AV+RGIR A
Sbjct: 354 ---------KPYRIELVGVVCDGYHAVIRGIRRA 378

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
TAIR|locus:2018304	534	AT1G04280 [Arabidopsis thalian	0.892	0.668	0.682	4.3e-125
TAIR|locus:2054497	552	AT2G30630 [Arabidopsis thalian	0.73	0.528	0.597	5.6e-84

TAIR|locus:2018304 AT1G04280 [Arabidopsis thaliana (taxid:3702)]

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 251/368 (68%), Positives = 291/368 (79%)

Query:    32 RRQKYKY--HMGNQD--IAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAY 87
             RR+K      MG +D  IAPL++R +SGR  NLERFSHYVARQ+GF+D NE PQLCKLA 
Sbjct:    45 RRRKLDQGASMGYKDVKIAPLIERKDSGRRSNLERFSHYVARQLGFEDPNEYPQLCKLAN 104

Query:    88 EYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVE 147
              YL K+KG ++N+ EY   EAE +SLYV L+EEFDRCIL+YF+F+W+ +S +ISQ LS E
Sbjct:   105 GYLLKTKGYDENVDEYLENEAERDSLYVHLLEEFDRCILTYFSFNWTQSSNLISQALSDE 164

Query:   148 SEKKT-KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRR-EGESHCTDVMVPA 205
             S++K  KLKDF+MAATRKQRFE+VTKDLK+KRV STLVEEM+ I     E HCT+VM P 
Sbjct:   165 SDQKVPKLKDFVMAATRKQRFERVTKDLKVKRVISTLVEEMRVIGSGSSEPHCTEVMSPV 224

Query:   206 ALSERSPVXXXXXXXXXXXKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS 265
             A ++RSPV           KSTVLKDI  ESFWS A  +AVV+EADAFKETDVIYRALSS
Sbjct:   225 AHNKRSPVLLLMGGGMGAGKSTVLKDIFLESFWSEAQADAVVIEADAFKETDVIYRALSS 284

Query:   266 KGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHK 325
             +GHHDDMLQTAELVHQSSTDAASSLLVTALN+GRDVIMDGTLSW PFVEQ I MARNVHK
Sbjct:   285 RGHHDDMLQTAELVHQSSTDAASSLLVTALNDGRDVIMDGTLSWEPFVEQMIEMARNVHK 344

Query:   326 SRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLA 385
              +YRMG GYKV+E+GT+ E YWE     EE+ + KEN +  + KPYRIELVGVVCDAYLA
Sbjct:   345 QKYRMGEGYKVSEEGTITEKYWE-----EEEEETKENGKQQNLKPYRIELVGVVCDAYLA 399

Query:   386 VVRGIRYA 393
             V RGIR A
Sbjct:   400 VARGIRRA 407

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2054497 AT2G30630 [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 184/308 (59%), Positives = 220/308 (71%)

Query:    89 YLKKSKGCEDNIYEYFSKEAEPESLYVKLV-EEFDRCILSYFTFHWSHASLMISQVLSVE 147
             ++K  +  E  I  YF+       L +  V  +    +L Y T   +       Q+LS +
Sbjct:   126 FIKLVEEFERCILSYFAYHWSHADLMISQVTNKLSLSLLCYIT---NRPKTF--QILSAD 180

Query:   148 SEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKA--IRREGESHCTDVMVPA 205
              E K KLK  +MAATR+QRFE+VTK+LK+ RVF+TLVEEMKA  I    +S CT+VM P 
Sbjct:   181 VEPKKKLKHIVMAATREQRFERVTKNLKVARVFNTLVEEMKAMGIASVDDSECTEVMAPV 240

Query:   206 ALSERSPVXXXXXXXXXXXKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS 265
             A  +RSPV           KSTVLKDI+KE FW+GA  +AVV+EADAFKE+DVIYRALS+
Sbjct:   241 AHKDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGA--DAVVIEADAFKESDVIYRALSA 298

Query:   266 KGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHK 325
             +GH D M++TAE VHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFV QTI MARNVH+
Sbjct:   299 RGHVD-MIKTAEFVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHR 357

Query:   326 SRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLA 385
              RYRMG GYKV E+G VIENYWE++  GE    Q++ R+   RKPYRIELVGVVCDAYLA
Sbjct:   358 HRYRMGAGYKVGENGDVIENYWERI--GERQQLQEDGRE---RKPYRIELVGVVCDAYLA 412

Query:   386 VVRGIRYA 393
             V+RGIR A
Sbjct:   413 VIRGIRRA 420

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	400
pfam06414	191	pfam06414, Zeta_toxin, Zeta toxin	2e-12

>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS 264
               +  PV +L+GG  GAGK+ + + +++E        N V ++ D  +     Y  L 
Sbjct: 5   DKPPQERPVAVLLGGQPGAGKTELARALLEEL----GGGNVVRIDPDELRTYHPDYDELQ 60

Query: 265 SKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 324
                D     +EL    ++     L+  A+  G ++I++GTL       +     +   
Sbjct: 61  KADPKD----ASELTQPDASRWVEKLIDYAIERGYNIILEGTLRSPDVARKLARKLKA-- 114

Query: 325 KSRYRMGVGYKVN 337
                   GY+V 
Sbjct: 115 -------AGYEVE 120

This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	400
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	99.73
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.72
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	99.68
PRK10416	318	signal recognition particle-docking protein FtsY;	99.55
PRK12337	475	2-phosphoglycerate kinase; Provisional	99.44
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.42
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.38
COG0645	170	Predicted kinase [General function prediction only	99.35
PRK10867	433	signal recognition particle protein; Provisional	99.24
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.23
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.22
PHA02530	300	pseT polynucleotide kinase; Provisional	99.19
TIGR00959	428	ffh signal recognition particle protein. This mode	99.17
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	99.15
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.09
PRK06762	166	hypothetical protein; Provisional	99.07
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.05
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.03
PRK00771	437	signal recognition particle protein Srp54; Provisi	99.03
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.99
PRK14974	336	cell division protein FtsY; Provisional	98.99
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.96
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.95
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.92
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.91
PRK12338	319	hypothetical protein; Provisional	98.88
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.88
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.84
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.81
COG4639	168	Predicted kinase [General function prediction only	98.8
PRK00889	175	adenylylsulfate kinase; Provisional	98.73
PRK05541	176	adenylylsulfate kinase; Provisional	98.71
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.66
PRK03846	198	adenylylsulfate kinase; Provisional	98.65
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.64
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.6
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.58
PLN02200	234	adenylate kinase family protein	98.57
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.56
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.55
PRK14532	188	adenylate kinase; Provisional	98.55
PRK14527	191	adenylate kinase; Provisional	98.55
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.5
PRK04195	482	replication factor C large subunit; Provisional	98.46
PRK13948	182	shikimate kinase; Provisional	98.43
KOG0781	587	consensus Signal recognition particle receptor, al	98.43
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.43
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.42
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.41
PRK14531	183	adenylate kinase; Provisional	98.4
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.4
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.39
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.38
PRK00131	175	aroK shikimate kinase; Reviewed	98.37
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.35
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.34
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.33
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.33
PRK11545	163	gntK gluconate kinase 1; Provisional	98.33
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.3
PRK01184	184	hypothetical protein; Provisional	98.29
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.28
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.28
PRK06696	223	uridine kinase; Validated	98.27
PRK00279	215	adk adenylate kinase; Reviewed	98.25
PRK13946	184	shikimate kinase; Provisional	98.24
PRK06217	183	hypothetical protein; Validated	98.24
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.24
PRK07261	171	topology modulation protein; Provisional	98.23
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.23
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.21
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.2
PHA02544	316	44 clamp loader, small subunit; Provisional	98.18
PRK04182	180	cytidylate kinase; Provisional	98.18
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.18
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.17
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.17
PLN02674	244	adenylate kinase	98.16
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.16
PRK14530	215	adenylate kinase; Provisional	98.16
PRK04040	188	adenylate kinase; Provisional	98.15
PLN03025	319	replication factor C subunit; Provisional	98.15
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.14
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.13
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.13
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.13
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.12
PRK08118	167	topology modulation protein; Reviewed	98.11
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.1
PRK09825	176	idnK D-gluconate kinase; Provisional	98.09
PRK13947	171	shikimate kinase; Provisional	98.09
PTZ00088	229	adenylate kinase 1; Provisional	98.08
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.06
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.05
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.04
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.04
PRK03839	180	putative kinase; Provisional	98.02
KOG1969	877	consensus DNA replication checkpoint protein CHL12	98.02
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.01
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.0
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.99
PRK00625	173	shikimate kinase; Provisional	97.99
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.99
PRK14737	186	gmk guanylate kinase; Provisional	97.97
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.96
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.94
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.94
PRK12402	337	replication factor C small subunit 2; Reviewed	97.94
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.94
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.92
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.92
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.92
PRK03731	171	aroL shikimate kinase II; Reviewed	97.91
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.9
PRK14738	206	gmk guanylate kinase; Provisional	97.9
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.9
PRK08356	195	hypothetical protein; Provisional	97.89
PRK02496	184	adk adenylate kinase; Provisional	97.89
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	97.89
PRK05057	172	aroK shikimate kinase I; Reviewed	97.88
PRK06547	172	hypothetical protein; Provisional	97.87
PRK14526	211	adenylate kinase; Provisional	97.87
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.87
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.86
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.85
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.85
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.84
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.84
PRK00698	205	tmk thymidylate kinase; Validated	97.84
PRK05480	209	uridine/cytidine kinase; Provisional	97.83
PRK07667	193	uridine kinase; Provisional	97.83
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.82
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.82
PRK08233	182	hypothetical protein; Provisional	97.8
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	97.8
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.8
PRK06761	282	hypothetical protein; Provisional	97.79
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.79
PRK13973	213	thymidylate kinase; Provisional	97.78
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.78
PRK00300	205	gmk guanylate kinase; Provisional	97.77
PRK13949	169	shikimate kinase; Provisional	97.76
PRK05439	311	pantothenate kinase; Provisional	97.76
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.76
PRK14528	186	adenylate kinase; Provisional	97.75
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.74
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.74
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.74
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	97.74
PLN02459	261	probable adenylate kinase	97.73
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.71
PRK15453	290	phosphoribulokinase; Provisional	97.71
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.71
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.71
PRK14529	223	adenylate kinase; Provisional	97.7
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.7
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.7
PLN02165	334	adenylate isopentenyltransferase	97.67
smart00382	148	AAA ATPases associated with a variety of cellular	97.67
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.66
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	97.64
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.63
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.63
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.62
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.61
PF00004	132	AAA: ATPase family associated with various cellula	97.6
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.6
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.59
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.58
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.58
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.58
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.57
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.57
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.57
PLN02924	220	thymidylate kinase	97.57
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.56
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.55
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.54
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.53
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	97.53
PRK13342	413	recombination factor protein RarA; Reviewed	97.52
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.51
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.51
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.51
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.51
PRK13975	196	thymidylate kinase; Provisional	97.5
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.49
PLN02840	421	tRNA dimethylallyltransferase	97.49
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.48
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.48
PRK13808	333	adenylate kinase; Provisional	97.48
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	97.47
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.45
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.45
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.43
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.43
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.42
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.42
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.42
PRK14734	200	coaE dephospho-CoA kinase; Provisional	97.39
PLN02748	468	tRNA dimethylallyltransferase	97.39
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.38
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.37
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.36
PTZ00301	210	uridine kinase; Provisional	97.35
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.33
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.33
PLN02199	303	shikimate kinase	97.32
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.31
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.28
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.25
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.25
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.25
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.23
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.23
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.22
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.21
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.2
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.2
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.19
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	97.19
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.19
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.19
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.15
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.15
PRK07933	213	thymidylate kinase; Validated	97.13
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.12
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.12
CHL00176	638	ftsH cell division protein; Validated	97.12
PLN02796	347	D-glycerate 3-kinase	97.11
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.11
CHL00181	287	cbbX CbbX; Provisional	97.09
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.09
PRK00023	225	cmk cytidylate kinase; Provisional	97.09
PLN02348	395	phosphoribulokinase	97.08
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.05
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.04
PLN03046	460	D-glycerate 3-kinase; Provisional	97.03
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.03
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.03
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.02
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.02
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.01
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.99
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.99
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.98
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.98
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.97
PTZ00451	244	dephospho-CoA kinase; Provisional	96.96
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	96.96
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	96.96
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	96.95
PRK13974	212	thymidylate kinase; Provisional	96.95
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.94
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.94
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	96.94
PRK13976	209	thymidylate kinase; Provisional	96.93
PRK07429	327	phosphoribulokinase; Provisional	96.93
PRK13341	725	recombination factor protein RarA/unknown domain f	96.93
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.91
CHL00195	489	ycf46 Ycf46; Provisional	96.91
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.9
PRK13768	253	GTPase; Provisional	96.89
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	96.88
PRK07471	365	DNA polymerase III subunit delta'; Validated	96.87
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.85
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.84
PLN02422	232	dephospho-CoA kinase	96.83
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.82
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	96.81
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	96.78
PLN02772	398	guanylate kinase	96.78
PHA00729	226	NTP-binding motif containing protein	96.75
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.75
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.74
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.72
PLN02318	656	phosphoribulokinase/uridine kinase	96.72
PRK05564	313	DNA polymerase III subunit delta'; Validated	96.72
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.72
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.71
KOG3062	281	consensus RNA polymerase II elongator associated p	96.69
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.68
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.68
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.68
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.67
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.65
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	96.65
cd02034	116	CooC The accessory protein CooC, which contains a	96.62
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.62
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.61
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	96.6
PRK08116	268	hypothetical protein; Validated	96.6
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.59
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.59
PRK09112	351	DNA polymerase III subunit delta'; Validated	96.58
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	96.57
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	96.56
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	96.55
PLN02842	505	nucleotide kinase	96.55
PRK04296	190	thymidine kinase; Provisional	96.55
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	96.55
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.55
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.55
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.54
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.53
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.53
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.53
CHL00206	2281	ycf2 Ycf2; Provisional	96.52
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	96.51
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.51
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.51
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.5
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.49
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.49
cd03114	148	ArgK-like The function of this protein family is u	96.46
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	96.45
PF13173	128	AAA_14: AAA domain	96.45
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.42
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.41
COG4240	300	Predicted kinase [General function prediction only	96.41
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.41
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.4
PF05729	166	NACHT: NACHT domain	96.39
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.38
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.38
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.37
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.36
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.35
PF13245	76	AAA_19: Part of AAA domain	96.35
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.34
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.33
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	96.33
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.31
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.3
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.3
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	96.3
PRK06851	367	hypothetical protein; Provisional	96.29
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.29
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.29
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	96.29
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.27
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.27
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.27
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	96.26
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.22
PRK05642	234	DNA replication initiation factor; Validated	96.21
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.2
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.19
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.18
PRK13886	241	conjugal transfer protein TraL; Provisional	96.17
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.17
PRK12608	380	transcription termination factor Rho; Provisional	96.16
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.16
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.15
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.15
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.14
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.14
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.14
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.13
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.12
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.1
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.1
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.1
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.09
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.08
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.07
PRK09087	226	hypothetical protein; Validated	96.07
PRK06067	234	flagellar accessory protein FlaH; Validated	96.07
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.06
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.05
PF02881	75	SRP54_N: SRP54-type protein, helical bundle domain	96.05
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.05
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.05
cd01128	249	rho_factor Transcription termination factor rho is	96.04
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.04
PTZ00202	550	tuzin; Provisional	96.03
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.03
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.03
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.02
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.02
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.02
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.98
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.98
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.98
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	95.98
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.97
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.97
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.96
PRK05973	237	replicative DNA helicase; Provisional	95.96
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.95
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.95
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	95.95
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.93
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.93
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.93
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.93
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.93
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.93
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.92
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.92
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	95.91
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.91
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.91
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	95.9
PRK10865	857	protein disaggregation chaperone; Provisional	95.89
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.89
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.88
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.88
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.87
COG1855	604	ATPase (PilT family) [General function prediction	95.87
PRK08084	235	DNA replication initiation factor; Provisional	95.87
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.86
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.86
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.86
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.85
PRK06893	229	DNA replication initiation factor; Validated	95.85
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	95.85
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.84
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.84
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.84
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.83
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.82
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.82
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.82
PRK04328	249	hypothetical protein; Provisional	95.82
PHA02244	383	ATPase-like protein	95.82
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.81
PF13479	213	AAA_24: AAA domain	95.8
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.8
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.8
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	95.79
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.78
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.78
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	95.78
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.78
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.77
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.77
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.76
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.75
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.75
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.74
COG3911	183	Predicted ATPase [General function prediction only	95.74
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.73
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.73
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.72
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	95.72
CHL00095	821	clpC Clp protease ATP binding subunit	95.72
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.72
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.71
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.71
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.71
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.71
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	95.7
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.69
PRK12377	248	putative replication protein; Provisional	95.69
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	95.69
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	95.69
TIGR00767	415	rho transcription termination factor Rho. Members	95.69
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.69
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.69
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.69
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	95.68
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.68
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	95.68
PRK07399	314	DNA polymerase III subunit delta'; Validated	95.67
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	95.67
PRK10865	857	protein disaggregation chaperone; Provisional	95.66
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.66
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	95.66
cd02036	179	MinD Bacterial cell division requires the formatio	95.66
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.65
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.64
PRK09183	259	transposase/IS protein; Provisional	95.64
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	95.64
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.64
cd03246	173	ABCC_Protease_Secretion This family represents the	95.63
PRK15455	644	PrkA family serine protein kinase; Provisional	95.63
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.62
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.62
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	95.62
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	95.62
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.61
PRK09376	416	rho transcription termination factor Rho; Provisio	95.61
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.61
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	95.61
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	95.61
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.6
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.6
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.59
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	95.59
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.58
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	95.57
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	95.57
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.54
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	95.54
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.54
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	95.54

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=99.73  E-value=5.2e-17  Score=161.99  Aligned_cols=205  Identities=21%  Similarity=0.309  Sum_probs=153.3

Q ss_pred             chHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHH
Q 015774           80 PQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIM  159 (400)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~  159 (400)
                      ..+.++..++.++++.+...+...|.... .+.+++.++||||+              .||++|+|++.+      ..|+
T Consensus        32 ~~~~~~~~gl~k~~~~~~~~~~~~~~~~~-~~~~de~~~eeLE~--------------~Li~aDvg~e~~------~~i~   90 (340)
T COG0552          32 GWFERLKQGLSKTKKNFGKGIKGLFLKKI-KEKLDEDLLEELEE--------------LLIEADVGVETA------EEII   90 (340)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccchhHHHHHHHHH--------------HHHHccccHHHH------HHHH
Confidence            45889999999999999998866553331 13489999999999              999999999999      8999


Q ss_pred             HHhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCcccccccccccc-CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          160 AATRKQ--RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALS-ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       160 ~~~r~~--rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~-~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+|+.  +-+++.....++..+...+.+   +....    ..+-.|.... ...|.+|++.|.||+||||.+.+||..+
T Consensus        91 ~~l~~~~~~~~~~~~~~~v~~~l~~~l~~---il~~~----~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l  163 (340)
T COG0552          91 EELRKREGKKKKIKDEETVKEALREALIE---ILRPV----DKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYL  163 (340)
T ss_pred             HHHHHHhcccccCCCHHHHHHHHHHHHHH---Hhccc----ccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHHH
Confidence            999983  334455677778877777766   44200    0111123333 4579999999999999999999999999


Q ss_pred             cccCCCCCeEEEeCCccccchHHHHHHhcC----CC----CChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCC
Q 015774          237 FWSGAATNAVVVEADAFKETDVIYRALSSK----GH----HDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLS  308 (400)
Q Consensus       237 g~~~~~~~avvIdaDefRe~D~irk~L~~~----G~----~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~  308 (400)
                        ..++..+++..+|+||....  +||...    |.    +......+..+++        .++.|.++|+||||-+|.+
T Consensus       164 --~~~g~~VllaA~DTFRAaAi--EQL~~w~er~gv~vI~~~~G~DpAaVafD--------Ai~~Akar~~DvvliDTAG  231 (340)
T COG0552         164 --KQQGKSVLLAAGDTFRAAAI--EQLEVWGERLGVPVISGKEGADPAAVAFD--------AIQAAKARGIDVVLIDTAG  231 (340)
T ss_pred             --HHCCCeEEEEecchHHHHHH--HHHHHHHHHhCCeEEccCCCCCcHHHHHH--------HHHHHHHcCCCEEEEeCcc
Confidence              67888999999999996544  444211    11    1122334445544        4455999999999999999


Q ss_pred             ChHHHHHHHHHHHhhh
Q 015774          309 WVPFVEQTIAMARNVH  324 (400)
Q Consensus       309 ~~~~re~~i~~arkvh  324 (400)
                      +.+.-.++|+.++++.
T Consensus       232 RLhnk~nLM~EL~KI~  247 (340)
T COG0552         232 RLHNKKNLMDELKKIV  247 (340)
T ss_pred             cccCchhHHHHHHHHH
Confidence            9999999999998864

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.72  E-value=6.3e-17  Score=149.48  Aligned_cols=135  Identities=27%  Similarity=0.397  Sum_probs=96.5

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHH
Q 015774          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       208 ~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      +...|.+++|+|+|||||||++..+...++    ..+.++||+|+||..+|.+..+...    ++...+..++..+..++
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~----~~~~~~~~~~~~a~~~~   82 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA----DPDEASELTQKEASRLA   82 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH----HCCCTHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh----hhhhhHHHHHHHHHHHH
Confidence            367999999999999999999999999873    3588999999999988887776542    12345566778888899


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhhhhhhccCCeeeccCCchhhhhcccccccchhhhhhhcccccC
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~~~~~~~~~~~~~  367 (400)
                      +.+++.++++|+|||+|+|+.++....++++.+++         .||+                                
T Consensus        83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~---------~GY~--------------------------------  121 (199)
T PF06414_consen   83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKA---------AGYK--------------------------------  121 (199)
T ss_dssp             HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHC---------TT-E--------------------------------
T ss_pred             HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHc---------CCce--------------------------------
Confidence            99999999999999999999999988877777753         2443                                


Q ss_pred             CCCcEEEEEEEEecchhHHHHHHHHHHHh
Q 015774          368 RKPYRIELVGVVCDAYLAVVRGIRYAYQY  396 (400)
Q Consensus       368 ~~py~~~~~~v~~~~~~av~r~~~r~~~t  396 (400)
                           ++|+.|.|++.+++.|-..|...+
T Consensus       122 -----v~l~~v~~~~e~s~~rv~~R~~~~  145 (199)
T PF06414_consen  122 -----VELYYVAVPPELSIERVRQRYEEG  145 (199)
T ss_dssp             -----EEEEEE---HHHHHHHHHHHHHHH
T ss_pred             -----EEEEEEECCHHHHHHHHHHHHHcc
Confidence                 566667777777777777776666

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=6.9e-17  Score=156.07  Aligned_cols=183  Identities=20%  Similarity=0.304  Sum_probs=139.6

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHH
Q 015774          153 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKD  231 (400)
Q Consensus       153 ~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~lie-e~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~  231 (400)
                      +.-..|-+.+++....-|++++.++ +++++++ ..++.++     +|.+|+.++. .+.|.+||++|+||.||||+|.+
T Consensus        36 ~iA~~i~e~L~~~~~~~v~~~eir~-~~~~l~~k~~~e~a~-----rY~lwR~ir~-~~~p~IILIGGasGVGkStIA~E  108 (299)
T COG2074          36 SIAIEIQEELKKEGIRLVTKDEIRE-VYQKLLEKGDPEVAK-----RYLLWRRIRK-MKRPLIILIGGASGVGKSTIAGE  108 (299)
T ss_pred             HHHHHHHHHHHhCCCeEeeHHHHHH-HHHHHHHhcCHHHHH-----HHHHHHHHhc-cCCCeEEEecCCCCCChhHHHHH
Confidence            4445667778888878888888888 9999999 5555554     7999999984 56799999999999999999999


Q ss_pred             HHHhccccCCCCCeEEEeCCccccchHHHHHHhcC----------------CCC--ChhhHhHHHHHHHH-HHHHHHHHH
Q 015774          232 IMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------------GHH--DDMLQTAELVHQSS-TDAASSLLV  292 (400)
Q Consensus       232 LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~----------------G~~--~d~~~aa~~v~~~~-~~~ae~lie  292 (400)
                      ||.++|++      .+|++|.+|+  ++++.+...                +.+  +.+.-+++.-|... ...++.+++
T Consensus       109 lA~rLgI~------~visTD~IRE--vlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~V~~GI~~VI~  180 (299)
T COG2074         109 LARRLGIR------SVISTDSIRE--VLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASAVMVGIEAVIE  180 (299)
T ss_pred             HHHHcCCc------eeecchHHHH--HHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHHhHHHHHHHHHHHH
Confidence            99999884      7899999996  555544322                111  12244556655544 778899999


Q ss_pred             HHHhCCCcEEEECcCCChHHHHHHHH-H----------HHhhhhhhhhccCCeeeccCCchhhhhcccccc
Q 015774          293 TALNEGRDVIMDGTLSWVPFVEQTIA-M----------ARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKE  352 (400)
Q Consensus       293 ~AL~eG~dVIIDgT~~~~~~re~~i~-~----------arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e  352 (400)
                      +|+.+|.|+||||.+..|.+.+.-.. .          .++.|+.+|+.+..|..  ...+..+|.++|.+
T Consensus       181 RAi~eG~~lIIEGvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~--~~rp~~Ryl~yf~E  249 (299)
T COG2074         181 RAIEEGEDLIIEGVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTH--ASRPGGRYLEYFKE  249 (299)
T ss_pred             HHHhcCcceEEEeeeeccccccHhhhccceEEEEEEeCCHHHHHHHHHHHHHHHh--ccCchhHHHHHHHH
Confidence            99999999999999999998864322 1          45789999998877763  23567777666655

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.55  E-value=1.5e-13  Score=137.11  Aligned_cols=200  Identities=19%  Similarity=0.293  Sum_probs=134.2

Q ss_pred             chHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHH
Q 015774           80 PQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIM  159 (400)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~  159 (400)
                      .-+.+|..++.++.+++.+.|..+|++.+    +++++++|||+              .||.+|++++.+      ..++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~l~~--------------~L~~~dv~~~~a------~~i~   70 (318)
T PRK10416         15 GWFERLKKGLSKTRENFGEGINGLFAKKK----IDEDLLEELEE--------------LLIEADVGVETT------EEII   70 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHH--------------HHHHCCCCHHHH------HHHH
Confidence            34679999999999999999999998665    89999999999              999999999998      7777


Q ss_pred             HHhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          160 AATRKQRFEK-VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       160 ~~~r~~rf~~-v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +..++.-.+. +.....+...+.+.+.+   +..       ....++....+.|.+|.+.|+|||||||++..||..+  
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~l~-------~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l--  138 (318)
T PRK10416         71 EELRERVKRKNLKDPEELKELLKEELAE---ILE-------PVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKY--  138 (318)
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHH---HhC-------cCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHH--
Confidence            7777653322 22333444444444443   331       1111233234578999999999999999999999988  


Q ss_pred             cCCCCCeEEEeCCccccchH----HHHHHhcCCC--CChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHH
Q 015774          239 SGAATNAVVVEADAFKETDV----IYRALSSKGH--HDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPF  312 (400)
Q Consensus       239 ~~~~~~avvIdaDefRe~D~----irk~L~~~G~--~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~  312 (400)
                      ...+..+.++++|.+|....    .+....+.+.  .......+..        +...+..+..+++++||-+|.++.+.
T Consensus       139 ~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~--------v~~~l~~~~~~~~D~ViIDTaGr~~~  210 (318)
T PRK10416        139 KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASV--------AFDAIQAAKARGIDVLIIDTAGRLHN  210 (318)
T ss_pred             HhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHH--------HHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            45567889999999984321    1111111110  0000011111        11234457789999999999888776


Q ss_pred             HHHHHHHHHhh
Q 015774          313 VEQTIAMARNV  323 (400)
Q Consensus       313 re~~i~~arkv  323 (400)
                      -+..++.++++
T Consensus       211 ~~~l~~eL~~~  221 (318)
T PRK10416        211 KTNLMEELKKI  221 (318)
T ss_pred             CHHHHHHHHHH
Confidence            66666666554

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=99.44  E-value=8.9e-13  Score=137.30  Aligned_cols=194  Identities=15%  Similarity=0.196  Sum_probs=123.4

Q ss_pred             hhhhhhcCcchhhhhhHHHHHHHHhhhhh---hhhhhhhhHHHHHH-HHHHHHHHHHHhhCcCccccccccccccCCCCE
Q 015774          138 LMISQVLSVESEKKTKLKDFIMAATRKQR---FEKVTKDLKMKRVF-STLVEEMKAIRREGESHCTDVMVPAALSERSPV  213 (400)
Q Consensus       138 ~li~~~~~~~~~~~~~~~~~~~~~~r~~r---f~~v~~~~~vkr~~-~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~  213 (400)
                      .||.+++|++.+      ..|++.+++.=   -.++.....++..+ ..+.+.+...    ....+.+|+++.. .+.|.
T Consensus       188 sLi~aDV~~~~A------~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~l~~~----~a~~y~la~~i~~-~k~p~  256 (475)
T PRK12337        188 SLMAAGLAPDVA------RRLARETERDLRRSGDRVVRRDQLRRKVEALLLEEAGEE----VARRYRLLRSIRR-PPRPL  256 (475)
T ss_pred             HHHHcCCCHHHH------HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHhhc-cCCCe
Confidence            899999999999      66666665421   12222223333333 3333322111    0113455666653 24699


Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCC----------------C-----C--
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH----------------H-----D--  270 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~----------------~-----~--  270 (400)
                      +|+++|+||+||||++..||.++|+.      .+|++|.+|+  .++..+.....                +     .  
T Consensus       257 vil~~G~~G~GKSt~a~~LA~~lg~~------~ii~tD~iR~--~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~  328 (475)
T PRK12337        257 HVLIGGVSGVGKSVLASALAYRLGIT------RIVSTDAVRE--VLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP  328 (475)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc------EEeehhHHHH--HHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence            99999999999999999999999762      4789999884  23332222100                0     0  


Q ss_pred             --hhhHhHHHHHHH-HHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHH------------HHhhhhhhhhccCCee
Q 015774          271 --DMLQTAELVHQS-STDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM------------ARNVHKSRYRMGVGYK  335 (400)
Q Consensus       271 --d~~~aa~~v~~~-~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~------------arkvh~~~yr~g~gY~  335 (400)
                        +....++..|.. +...++.++++++.+|.+|||||.+..|.+++.-...            ..+.|+.||..+..|.
T Consensus       329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~  408 (475)
T PRK12337        329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRET  408 (475)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhc
Confidence              011123333332 2566889999999999999999999999987632211            2356889998887764


Q ss_pred             eccCCchhhhhcccccc
Q 015774          336 VNEDGTVIENYWEQVKE  352 (400)
Q Consensus       336 v~~dg~~~E~Ywe~~~e  352 (400)
                      .  ..++.+.|.++|.+
T Consensus       409 ~--~~r~~~ky~~~f~~  423 (475)
T PRK12337        409 G--ASRPRERYLRHFEE  423 (475)
T ss_pred             c--CCCchhHHHHhHHH
Confidence            3  45678888888776

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.42  E-value=1.4e-12  Score=129.54  Aligned_cols=179  Identities=20%  Similarity=0.297  Sum_probs=123.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774          156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEM-KAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~-~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~  234 (400)
                      ..|.+.++++.-..++.++..+.++.+|.+.. ..++     .++.+|+.+.. .+.|.+|+++|+|||||||+|..|+.
T Consensus        41 ~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~-----~~y~~~~~i~~-~~~p~iIlI~G~sgsGKStlA~~La~  114 (301)
T PRK04220         41 SEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVA-----EKYLLWRRIRK-SKEPIIILIGGASGVGTSTIAFELAS  114 (301)
T ss_pred             HHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHH-----HHHHHHHHHhc-CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45555666666667778888888888887743 2222     24778877773 25799999999999999999999999


Q ss_pred             hccccCCCCCeEEEeCCccccchHHHHHHhcC-----------------CCC-Chh-hHhHHHHHH-HHHHHHHHHHHHH
Q 015774          235 ESFWSGAATNAVVVEADAFKETDVIYRALSSK-----------------GHH-DDM-LQTAELVHQ-SSTDAASSLLVTA  294 (400)
Q Consensus       235 ~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-----------------G~~-~d~-~~aa~~v~~-~~~~~ae~lie~A  294 (400)
                      ++++     . .+|++|.||+  .++..+...                 +.+ ++. .-.+...|. .+...+..+++++
T Consensus       115 ~l~~-----~-~vi~~D~~re--~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~~~~~v~~gi~~~I~~~  186 (301)
T PRK04220        115 RLGI-----R-SVIGTDSIRE--VMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFERHVEPVSVGVEAVIERA  186 (301)
T ss_pred             HhCC-----C-EEEechHHHH--HHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9965     2 5899999994  333222111                 001 111 122222222 3366688999999


Q ss_pred             HhCCCcEEEECcCCChHHHHHHHH------------HHHhhhhhhhhccCCeeeccCCchhhhhcccccc
Q 015774          295 LNEGRDVIMDGTLSWVPFVEQTIA------------MARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKE  352 (400)
Q Consensus       295 L~eG~dVIIDgT~~~~~~re~~i~------------~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e  352 (400)
                      +.+|.++|+||.+..|++.+....            ..++.|+.+|..+..|.    .++.+.|.+++.+
T Consensus       187 ~~~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~----~r~~~~y~~~~~~  252 (301)
T PRK04220        187 LKEGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVS----RRPAERYLKNFEI  252 (301)
T ss_pred             HHhCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhh----CCchhhHHHHHHH
Confidence            999999999999999998775433            24567889988887774    4566666555544

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.38  E-value=4.9e-12  Score=108.76  Aligned_cols=92  Identities=26%  Similarity=0.365  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC--ChhhHhHHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH--DDMLQTAELVHQSSTDAASSLL  291 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~--~d~~~aa~~v~~~~~~~ae~li  291 (400)
                      ||+|+|+|||||||+++.|++.++       ..+|+.|+++      ..+.+.+..  .+.....    ......+...+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-------~~~i~~D~~~------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   63 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-------AVVISQDEIR------RRLAGEDPPSPSDYIEAE----ERAYQILNAAI   63 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-------EEEEEHHHHH------HHHCCSSSGCCCCCHHHH----HHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-------CEEEeHHHHH------HHHcccccccchhHHHHH----HHHHHHHHHHH
Confidence            689999999999999999999984       5899988765      556543211  1111222    22334455577


Q ss_pred             HHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       292 e~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ..++..|.++|+|+|+..+..++.+.+++++
T Consensus        64 ~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~   94 (143)
T PF13671_consen   64 RKALRNGNSVVVDNTNLSREERARLRELARK   94 (143)
T ss_dssp             HHHHHTT-EEEEESS--SHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCceeccCcCCHHHHHHHHHHHHH
Confidence            8899999999999999999999999888875

...

>COG0645 Predicted kinase [General function prediction only]

Probab=99.35  E-value=6.2e-12  Score=115.40  Aligned_cols=123  Identities=20%  Similarity=0.205  Sum_probs=88.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC---CCCChhhHhHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---GHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~---G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      +.+++|+|.||+||||+|+.|++.+       ++++|.+|++      ++.|++.   ...+...++.... ...+..+.
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~l-------gA~~lrsD~i------rk~L~g~p~~~r~~~g~ys~~~~-~~vy~~l~   66 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELL-------GAIRLRSDVI------RKRLFGVPEETRGPAGLYSPAAT-AAVYDELL   66 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhc-------CceEEehHHH------HHHhcCCcccccCCCCCCcHHHH-HHHHHHHH
Confidence            3689999999999999999999999       5699986655      4888872   1111222222222 44455555


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhhhhhhccCCeeeccCCchhhhhcccccccch
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEE  355 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~  355 (400)
                      .....+++.|++||+|+|+.++..|+.....+++.+       ..+..-.-..+.++.|++..+|..
T Consensus        67 ~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~g-------v~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          67 GRAELLLSSGHSVVLDATFDRPQERALARALARDVG-------VAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             HHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccC-------CceEEEEcCCcHHHHHHHHHHhCC
Confidence            678889999999999999999999999999888753       223222234577888888777654

>PRK10867 signal recognition particle protein; Provisional

Probab=99.24  E-value=4.4e-11  Score=124.12  Aligned_cols=173  Identities=19%  Similarity=0.254  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-hhhhhhHHHH-HHHHHHHHHHHHHhh
Q 015774          116 KLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-KVTKDLKMKR-VFSTLVEEMKAIRRE  193 (400)
Q Consensus       116 ~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-~v~~~~~vkr-~~~~liee~~~i~~~  193 (400)
                      +.++|+++              .||.+|.+.+..      ..+++..+++-.. .+........ +...+.+++..+.. 
T Consensus        29 ~~l~ei~~--------------~Ll~aDV~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~-   87 (433)
T PRK10867         29 EALREVRL--------------ALLEADVNLPVV------KDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILG-   87 (433)
T ss_pred             HHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhC-
Confidence            68899999              999999999988      6666766664322 2322211112 22222334333331 


Q ss_pred             CcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCccccchHHHHHH---hcC-CC
Q 015774          194 GESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKETDVIYRAL---SSK-GH  268 (400)
Q Consensus       194 ~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDefRe~D~irk~L---~~~-G~  268 (400)
                            ....++......|.+|+++|++||||||++..||..+  ... +..+.+|++|.||....  +++   ... |.
T Consensus        88 ------~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l--~~~~G~kV~lV~~D~~R~aa~--eQL~~~a~~~gv  157 (433)
T PRK10867         88 ------GENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYL--KKKKKKKVLLVAADVYRPAAI--EQLKTLGEQIGV  157 (433)
T ss_pred             ------CCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHH--HHhcCCcEEEEEccccchHHH--HHHHHHHhhcCC
Confidence                  1112233334579999999999999999999999877  344 66889999999996432  233   221 11


Q ss_pred             CChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          269 HDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       269 ~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      +--.....    ......+...++.+...++++||-+|.++...-+..+..+.++
T Consensus       158 ~v~~~~~~----~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i  208 (433)
T PRK10867        158 PVFPSGDG----QDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAI  208 (433)
T ss_pred             eEEecCCC----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHH
Confidence            10000000    0011223334555677899999999988765444555554443

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.23  E-value=1.2e-10  Score=120.83  Aligned_cols=176  Identities=14%  Similarity=0.106  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhh-hhhhhhhHH-HHHHHHHHHHHHHH
Q 015774          113 LYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRF-EKVTKDLKM-KRVFSTLVEEMKAI  190 (400)
Q Consensus       113 l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf-~~v~~~~~v-kr~~~~liee~~~i  190 (400)
                      --.+.++|+++              .|+.+|.+....      ..+++..+++-. +++...... ..+...+.+++..+
T Consensus        26 ~i~~~l~ei~~--------------aLleaDV~~~vv------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~   85 (429)
T TIGR01425        26 VLNAMLKEICT--------------ALLESDVNIKLV------RQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNL   85 (429)
T ss_pred             HHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH
Confidence            44457888888              999999998877      555666665321 333332222 22223333343333


Q ss_pred             HhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH---hcC-
Q 015774          191 RREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL---SSK-  266 (400)
Q Consensus       191 ~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L---~~~-  266 (400)
                      ..       +...|+......|.+|+|+|++||||||++..||..+  ...+..+.++++|.+|....  .+|   ... 
T Consensus        86 l~-------~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l--~~~G~kV~lV~~D~~R~aA~--eQLk~~a~~~  154 (429)
T TIGR01425        86 VD-------PGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYY--QRKGFKPCLVCADTFRAGAF--DQLKQNATKA  154 (429)
T ss_pred             hC-------CCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEcCcccchhHH--HHHHHHhhcc
Confidence            31       1112233334678999999999999999999999887  45566889999999995433  333   221 


Q ss_pred             CCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          267 GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       267 G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      +.+-......    ......+...++.+.++++++||-+|.++.+.-+.++....++
T Consensus       155 ~vp~~~~~~~----~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i  207 (429)
T TIGR01425       155 RIPFYGSYTE----SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQV  207 (429)
T ss_pred             CCeEEeecCC----CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHH
Confidence            1110000000    0011223334555667899999999998887767777766554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.22  E-value=7.6e-11  Score=110.34  Aligned_cols=132  Identities=16%  Similarity=0.283  Sum_probs=85.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-C-----------CCC---hhhHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-G-----------HHD---DMLQT  275 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G-----------~~~---d~~~a  275 (400)
                      .|.+|+++|+|||||||+++.|+.++|+      ..++.+|.+|+  .++...... .           .++   +....
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~------~~~~~~D~~r~--~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~   73 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAI------DIVLSGDYLRE--FLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVK   73 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC------eEEehhHHHHH--HHHHhcCCCCCcccccHHHHHHcCCcchhHHHH
Confidence            5789999999999999999999999864      26788888874  333322211 0           000   11111


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHH----------HHhhhhhhhhccCCeeeccCCchhh
Q 015774          276 AELVH-QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM----------ARNVHKSRYRMGVGYKVNEDGTVIE  344 (400)
Q Consensus       276 a~~v~-~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~----------arkvh~~~yr~g~gY~v~~dg~~~E  344 (400)
                      +...| +.++.....++..++.+|.+||+|+++..+.+++.....          ..+.+..|+..+..|.  .+.++.+
T Consensus        74 ~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~--~~~~p~~  151 (197)
T PRK12339         74 GYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYT--HKNSPGK  151 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcc--cCCCcHH
Confidence            22222 233566778899999999999999999999887532211          1234545555554443  2456778


Q ss_pred             hhcccccc
Q 015774          345 NYWEQVKE  352 (400)
Q Consensus       345 ~Ywe~~~e  352 (400)
                      .|.++|.+
T Consensus       152 ~~~~~~~~  159 (197)
T PRK12339        152 RLAEHLPE  159 (197)
T ss_pred             HHHHHHHH
Confidence            88877766

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.19  E-value=1.6e-10  Score=112.07  Aligned_cols=98  Identities=24%  Similarity=0.280  Sum_probs=68.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL  291 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~li  291 (400)
                      |.+|+|+|+|||||||+|+.|++++      .+..+|+.|+++      +.+...+......+.... ...........+
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~------~~~~~l~~D~~r------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   68 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKN------PKAVNVNRDDLR------QSLFGHGEWGEYKFTKEK-EDLVTKAQEAAA   68 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHC------CCCEEEeccHHH------HHhcCCCcccccccChHH-HHHHHHHHHHHH
Confidence            6799999999999999999999998      144899999887      344332110001110000 011233445567


Q ss_pred             HHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       292 e~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ..++.+|.+||+|+|+..+..++.+.+++++
T Consensus        69 ~~~l~~g~~vIid~~~~~~~~~~~~~~la~~   99 (300)
T PHA02530         69 LAALKSGKSVIISDTNLNPERRRKWKELAKE   99 (300)
T ss_pred             HHHHHcCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence            7788999999999999999999888887764

>TIGR00959 ffh signal recognition particle protein

Probab=99.17  E-value=2.5e-10  Score=118.39  Aligned_cols=177  Identities=18%  Similarity=0.226  Sum_probs=100.8

Q ss_pred             hhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-hhhhhhH-HHHHHHHHHHHHHH
Q 015774          112 SLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-KVTKDLK-MKRVFSTLVEEMKA  189 (400)
Q Consensus       112 ~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-~v~~~~~-vkr~~~~liee~~~  189 (400)
                      .-..+.++|+++              .|+.+|.+.+..      ..+++..+++-.+ ++..... ...+...+.+++..
T Consensus        24 ~~i~~~l~ei~~--------------~Ll~aDV~~~~v------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~   83 (428)
T TIGR00959        24 KNIKEALREIRL--------------ALLEADVNLQVV------KDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA   83 (428)
T ss_pred             HHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHH
Confidence            344468889999              999999998877      5666666654322 2211111 12222233333333


Q ss_pred             HHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH---hcC
Q 015774          190 IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL---SSK  266 (400)
Q Consensus       190 i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L---~~~  266 (400)
                      +..       ....++......|.+++++|+|||||||++..||..+- ...+..+.+|++|.+|....  .++   ...
T Consensus        84 ~l~-------~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g~kV~lV~~D~~R~~a~--~QL~~~a~~  153 (428)
T TIGR00959        84 ILG-------GENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLK-KKQGKKVLLVACDLYRPAAI--EQLKVLGQQ  153 (428)
T ss_pred             HhC-------CCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCeEEEEeccccchHHH--HHHHHHHHh
Confidence            331       00112322345799999999999999999999998861 13456889999999995322  222   111


Q ss_pred             -CCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          267 -GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       267 -G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                       +.+.......    ......+...++.+..+++++||-+|.++...-+..+..+.+
T Consensus       154 ~gvp~~~~~~~----~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~  206 (428)
T TIGR00959       154 VGVPVFALGKG----QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAA  206 (428)
T ss_pred             cCCceEecCCC----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHH
Confidence             1110000000    000122334555677899998888888865543445544433

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=99.15  E-value=3.3e-10  Score=116.83  Aligned_cols=183  Identities=20%  Similarity=0.263  Sum_probs=115.8

Q ss_pred             hcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhhhh-----hhHHHHH
Q 015774          105 SKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTK-----DLKMKRV  179 (400)
Q Consensus       105 ~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v~~-----~~~vkr~  179 (400)
                      +...-.|.--.+.+.|+-.              .|+.+|.....-  +++-+.|-+..-.   +.|.+     +.-++.|
T Consensus        18 g~~~i~E~~i~e~~reir~--------------ALLeADVnl~vV--k~fi~~ikera~g---~ev~~~l~p~q~~iKiV   78 (451)
T COG0541          18 GKGRITEKDVKEALREIRR--------------ALLEADVNLKVV--KDFIKRIKERALG---EEVPKGLTPGQQFIKIV   78 (451)
T ss_pred             CCCcCCHHHHHHHHHHHHH--------------HHHhccccHHHH--HHHHHHHHHHhcc---ccCCCCCCHHHHHHHHH
Confidence            3444334444566677777              888888876544  2333333332222   22333     3445555


Q ss_pred             HHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHH
Q 015774          180 FSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI  259 (400)
Q Consensus       180 ~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~i  259 (400)
                      +.+|++-    +- .      -..++....++|.+|+|+|+.||||||.+..||..+  ...+..+.++++|.+|.... 
T Consensus        79 ~eELv~l----lG-~------~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~l--kk~~~kvllVaaD~~RpAA~-  144 (451)
T COG0541          79 YEELVKL----LG-G------ENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYL--KKKGKKVLLVAADTYRPAAI-  144 (451)
T ss_pred             HHHHHHH----hC-C------CCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHH--HHcCCceEEEecccCChHHH-
Confidence            5555443    31 0      111222235789999999999999999999999998  66788899999999996443 


Q ss_pred             HHHH---hcC-CCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhh
Q 015774          260 YRAL---SSK-GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHK  325 (400)
Q Consensus       260 rk~L---~~~-G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~  325 (400)
                       ++|   ... +.+. +..   ...+.....+.+.++.|-.+++||||-+|.++...-+.+++..++++.
T Consensus       145 -eQL~~La~q~~v~~-f~~---~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~  209 (451)
T COG0541         145 -EQLKQLAEQVGVPF-FGS---GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKE  209 (451)
T ss_pred             -HHHHHHHHHcCCce-ecC---CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHh
Confidence             444   222 2110 000   000112345667788899999999999999999988889888877654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.09  E-value=4e-09  Score=103.29  Aligned_cols=168  Identities=17%  Similarity=0.273  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhh-hhhhhhhHHHHHHHHHHHHHHHHH
Q 015774          113 LYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRF-EKVTKDLKMKRVFSTLVEEMKAIR  191 (400)
Q Consensus       113 l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf-~~v~~~~~vkr~~~~liee~~~i~  191 (400)
                      +..++++||+.              .|+.++++.+.+      ..+++..+++-- ++......+...+.+++.+   +.
T Consensus         2 ~~~~~~~~l~~--------------~L~~~dv~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~---~~   58 (272)
T TIGR00064         2 DDEDFFEELEE--------------ILLESDVGYEVV------EKIIEALKKELKGKKVKDAELLKEILKEYLKE---IL   58 (272)
T ss_pred             ccHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH---HH
Confidence            45789999999              999999999888      666776665321 2222233333444443333   32


Q ss_pred             hhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH---hcC-C
Q 015774          192 REGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL---SSK-G  267 (400)
Q Consensus       192 ~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L---~~~-G  267 (400)
                      .       ..-.++......|.+|+++|+||+||||++..||..+  ...+..+.++++|.||....  +++   ... +
T Consensus        59 ~-------~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~~r~~a~--~ql~~~~~~~~  127 (272)
T TIGR00064        59 K-------ETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDTFRAAAI--EQLEEWAKRLG  127 (272)
T ss_pred             c-------ccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCCCCHHHH--HHHHHHHHhCC
Confidence            1       1111222234568899999999999999999999887  45667889999999985322  222   111 1


Q ss_pred             CC----ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          268 HH----DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       268 ~~----~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .+    ......+.        .+...+..+..+++++||-+|.++.+.-...++..++
T Consensus       128 i~~~~~~~~~dp~~--------~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~  178 (272)
T TIGR00064       128 VDVIKQKEGADPAA--------VAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKK  178 (272)
T ss_pred             eEEEeCCCCCCHHH--------HHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHH
Confidence            10    00001111        1122344567789997777777766544445544433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK06762 hypothetical protein; Provisional

Probab=99.07  E-value=7.9e-10  Score=98.40  Aligned_cols=90  Identities=19%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~ae~l  290 (400)
                      |.+|+|+|+|||||||+|+.|++.++     .++++++.|.++      +.+... +.++.  ..        ......+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~-----~~~~~i~~D~~r------~~l~~~~~~~~~--~~--------~~~~~~~   60 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLG-----RGTLLVSQDVVR------RDMLRVKDGPGN--LS--------IDLIEQL   60 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEecHHHHH------HHhccccCCCCC--cC--------HHHHHHH
Confidence            78999999999999999999999984     367889987766      444321 11111  11        1123335


Q ss_pred             HHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       291 ie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      +..++..|.+||+|+++....+++.+..+++.
T Consensus        61 ~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~   92 (166)
T PRK06762         61 VRYGLGHCEFVILEGILNSDRYGPMLKELIHL   92 (166)
T ss_pred             HHHHHhCCCEEEEchhhccHhHHHHHHHHHHh
Confidence            55678899999999999877766655555543

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.05  E-value=6.5e-10  Score=117.95  Aligned_cols=79  Identities=23%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ...|.+|+|+|+|||||||+|+.++...|+       ++|+.|++..                        ++    .+.
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~-------~~vn~D~lg~------------------------~~----~~~  410 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGY-------KHVNADTLGS------------------------TQ----NCL  410 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCC-------eEECcHHHHH------------------------HH----HHH
Confidence            467999999999999999999999998754       8999876531                        01    122


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ..+..+|++|.+||||+|+..+..|..++++|++
T Consensus       411 ~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~  444 (526)
T TIGR01663       411 TACERALDQGKRCAIDNTNPDAASRAKFLQCARA  444 (526)
T ss_pred             HHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            3567799999999999999999999999999986

Note that the EC number for the kinase function is: 2.7.1.78

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.03  E-value=1e-09  Score=99.25  Aligned_cols=101  Identities=16%  Similarity=0.136  Sum_probs=63.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCC--CCChhhHhHHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG--HHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G--~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ..+|+|+|+|||||||+++.|++.++     ...++++.|+|+..-+....-...+  ..+++....+..++..+.....
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~   76 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLA-----EPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYE   76 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhC-----CCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHH
Confidence            35899999999999999999999973     2457789898873211100000000  0000011111223445555556


Q ss_pred             HHHHHHhCCCcEEEECcCC-ChHHHHHHH
Q 015774          290 LLVTALNEGRDVIMDGTLS-WVPFVEQTI  317 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~-~~~~re~~i  317 (400)
                      .+..++++|.+||+|.++. .+..++.+.
T Consensus        77 ~~~~~l~~G~~VIvD~~~~~~~~~r~~~~  105 (175)
T cd00227          77 AVAAMARAGANVIADDVFLGRAALQDCWR  105 (175)
T ss_pred             HHHHHHhCCCcEEEeeeccCCHHHHHHHH
Confidence            7788999999999999988 566555443

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=99.03  E-value=1.7e-09  Score=112.62  Aligned_cols=189  Identities=18%  Similarity=0.219  Sum_probs=105.4

Q ss_pred             ccchhhHHHhhhcCCCcchhHHH----HHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-
Q 015774           94 KGCEDNIYEYFSKEAEPESLYVK----LVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-  168 (400)
Q Consensus        94 ~~~~~~i~~~~~~~~~~~~l~~~----~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-  168 (400)
                      +++...+..++++..    |+++    .++|+++              .|+.+|.+.+..      ..+++..+++-.. 
T Consensus         3 ~~l~~~~~~l~~~~~----l~e~~i~~~l~ei~~--------------aLl~adV~~~~~------~~~~~~v~~~~~~~   58 (437)
T PRK00771          3 ESLRDALKKLAGKSR----IDEKTVKEVVKDIQR--------------ALLQADVNVKLV------KELSKSIKERALEE   58 (437)
T ss_pred             hHHHHHHHHHhCCCC----CCHHHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhcc
Confidence            445556666766665    5555    8888999              999999998887      6666666653322 


Q ss_pred             hhhhhhHH-HHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774          169 KVTKDLKM-KRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV  247 (400)
Q Consensus       169 ~v~~~~~v-kr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv  247 (400)
                      .+...... ..+...+.+++..+..       ....++.. ...|.+|+|+|++|+||||++..||..+  ...+..+.+
T Consensus        59 ~~~~~~~~~~~~~~~v~~~L~~~l~-------~~~~~~~~-~~~p~vI~lvG~~GsGKTTtaakLA~~L--~~~g~kV~l  128 (437)
T PRK00771         59 EPPKGLTPREHVIKIVYEELVKLLG-------EETEPLVL-PLKPQTIMLVGLQGSGKTTTAAKLARYF--KKKGLKVGL  128 (437)
T ss_pred             cccccCCcHHHHHHHHHHHHHHHhC-------CCcccccc-CCCCeEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEE
Confidence            22111111 1222333333333331       00011111 2579999999999999999999999987  455678899


Q ss_pred             EeCCccccchH-HHHHHhcC-CCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          248 VEADAFKETDV-IYRALSSK-GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       248 IdaDefRe~D~-irk~L~~~-G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      |++|.+|.... ..+.+... +.+.......    ......+...++.+.  +.++||-+|.++...-+.+++..+.
T Consensus       129 V~~D~~R~aa~eQL~~la~~~gvp~~~~~~~----~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~  199 (437)
T PRK00771        129 VAADTYRPAAYDQLKQLAEKIGVPFYGDPDN----KDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKE  199 (437)
T ss_pred             ecCCCCCHHHHHHHHHHHHHcCCcEEecCCc----cCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHH
Confidence            99999995321 11222221 1110000000    001112223333332  3487777777766665666655444

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.99  E-value=3.5e-09  Score=97.75  Aligned_cols=125  Identities=15%  Similarity=0.181  Sum_probs=73.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC--CC--CChhhHhHHHHHHHHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GH--HDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~--G~--~~d~~~aa~~v~~~~~~~ae  288 (400)
                      .+|+|.|+|-|||||+|+.|.+.+.     ...++++.|+|+..-+  ......  |.  .++.... .......+....
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~-----~p~~~l~~D~f~~~~~--~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~   73 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLP-----EPWLHLSVDTFVDMMP--PGRYRPGDGLEPAGDRPDG-GPLFRRLYAAMH   73 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSS-----S-EEEEEHHHHHHHS---GGGGTSTTSEEEETTSEEE--HHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCc-----CCeEEEecChHHhhcC--cccccCCccccccccCCch-hHHHHHHHHHHH
Confidence            5899999999999999999999983     4679999999984211  111111  10  0010111 122234444555


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhhhhhhccCCeeeccCCchhhhhcccccccchhhhhhhcccccCC
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~~~~~~~~~~~~~~  368 (400)
                      ..+....+.|.|||+|+.+..+..   +.+..++.                                            -
T Consensus        74 ~~iaa~a~aG~~VIvD~v~~~~~~---l~d~l~~~--------------------------------------------L  106 (174)
T PF07931_consen   74 AAIAAMARAGNNVIVDDVFLGPRW---LQDCLRRL--------------------------------------------L  106 (174)
T ss_dssp             HHHHHHHHTT-EEEEEE--TTTHH---HHHHHHHH--------------------------------------------H
T ss_pred             HHHHHHHhCCCCEEEecCccCcHH---HHHHHHHH--------------------------------------------h
Confidence            567778899999999988877543   22222110                                            0


Q ss_pred             CCcEEEEEEEEecchhHHHHHHHH
Q 015774          369 KPYRIELVGVVCDAYLAVVRGIRY  392 (400)
Q Consensus       369 ~py~~~~~~v~~~~~~av~r~~~r  392 (400)
                      .+|.+-+|||+|+...+-.|=+.|
T Consensus       107 ~~~~vl~VgV~Cpleil~~RE~~R  130 (174)
T PF07931_consen  107 AGLPVLFVGVRCPLEILERRERAR  130 (174)
T ss_dssp             TTS-EEEEEEE--HHHHHHHHHHH
T ss_pred             CCCceEEEEEECCHHHHHHHHHhc
Confidence            356678899999999888777766

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.99  E-value=3.2e-09  Score=107.16  Aligned_cols=174  Identities=18%  Similarity=0.264  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-hhhhhhHHHH-HHHHHHHHHHHHHh
Q 015774          115 VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-KVTKDLKMKR-VFSTLVEEMKAIRR  192 (400)
Q Consensus       115 ~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-~v~~~~~vkr-~~~~liee~~~i~~  192 (400)
                      .+.++||+.              .|+.+|++.+.+      ..+++..++.-.+ ++........ +...+.+.+..+..
T Consensus        64 ~~~l~~l~~--------------~Ll~~dv~~~~a------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~  123 (336)
T PRK14974         64 EDLLEELEL--------------ELLESDVALEVA------EEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLS  123 (336)
T ss_pred             HHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhC
Confidence            478899999              999999999988      6666666653211 1211111111 22223333333432


Q ss_pred             hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh---cC-CC
Q 015774          193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS---SK-GH  268 (400)
Q Consensus       193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~---~~-G~  268 (400)
                      .. . -..+..++. ....|.+|+++|+||+||||++..|+..+  ...+..+.++++|.||....  .++.   .. |.
T Consensus       124 ~~-~-~~~~~~~~~-~~~~~~vi~~~G~~GvGKTTtiakLA~~l--~~~g~~V~li~~Dt~R~~a~--eqL~~~a~~lgv  196 (336)
T PRK14974        124 VG-D-LFDLIEEIK-SKGKPVVIVFVGVNGTGKTTTIAKLAYYL--KKNGFSVVIAAGDTFRAGAI--EQLEEHAERLGV  196 (336)
T ss_pred             CC-c-chhhhhhhh-ccCCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcCcHHHH--HHHHHHHHHcCC
Confidence            00 0 000111111 23468999999999999999999999877  44556788899999985332  2221   11 11


Q ss_pred             CC----hhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          269 HD----DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       269 ~~----d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      +-    .....+        ..+...++.+...|+++||-+|.++.+.-..+++.++++
T Consensus       197 ~v~~~~~g~dp~--------~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i  247 (336)
T PRK14974        197 KVIKHKYGADPA--------AVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKI  247 (336)
T ss_pred             ceecccCCCCHH--------HHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHH
Confidence            10    000111        112234445666899999988888776555555555443

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.96  E-value=3.3e-09  Score=101.23  Aligned_cols=92  Identities=25%  Similarity=0.395  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~  293 (400)
                      +|+|+|+|||||||+|+.|++.+.  ..+.++++++.|.+++....+.         .  .....    .......++..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~--~~~~~v~~i~~D~lr~~~~~~~---------~--~~e~~----~~~~~~~~i~~   63 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLS--EKNIDVIILGTDLIRESFPVWK---------E--KYEEF----IRDSTLYLIKT   63 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH--HcCCceEEEccHHHHHHhHHhh---------H--HhHHH----HHHHHHHHHHH
Confidence            589999999999999999999883  2345778998888763211000         0  00011    12223346778


Q ss_pred             HHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          294 ALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       294 AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      +++.|..||+|+++....++.++..++++
T Consensus        64 ~l~~~~~VI~D~~~~~~~~r~~l~~~ak~   92 (249)
T TIGR03574        64 ALKNKYSVIVDDTNYYNSMRRDLINIAKE   92 (249)
T ss_pred             HHhCCCeEEEeccchHHHHHHHHHHHHHh
Confidence            99999999999999888888888887765

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.95  E-value=6.3e-09  Score=91.00  Aligned_cols=94  Identities=17%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~  293 (400)
                      ||+|+|+|||||||+++.|++.+++       .+++.|+++..........+  .+.......... ...   .......
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~-------~~i~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~---~~~~~~~   67 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGA-------PFIDGDDLHPPANIAKMAAG--IPLNDEDRWPWL-QAL---TDALLAK   67 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCC-------EEEeCcccccHHHHHHHHcC--CCCCccchhhHH-HHH---HHHHHHH
Confidence            5899999999999999999999854       89999999853221112222  111100000111 111   1112222


Q ss_pred             HHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774          294 ALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       294 AL~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      .+.+|.+||+|+++....+++.+..++
T Consensus        68 l~~~~~~vVid~~~~~~~~r~~~~~~~   94 (150)
T cd02021          68 LASAGEGVVVACSALKRIYRDILRGGA   94 (150)
T ss_pred             HHhCCCCEEEEeccccHHHHHHHHhcC
Confidence            235899999999998887776665554

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.92  E-value=6.4e-09  Score=94.50  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ...|.+|+|+|+|||||||+++.|+..+.  ..+.+++++++|.++      +.+.......+     ... ......+.
T Consensus        15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~--~~~~~~~~l~~d~~r------~~l~~~~~~~~-----~~~-~~~~~~~~   80 (184)
T TIGR00455        15 GHRGVVIWLTGLSGSGKSTIANALEKKLE--SKGYRVYVLDGDNVR------HGLNKDLGFSE-----EDR-KENIRRIG   80 (184)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECChHHH------hhhccccCCCH-----HHH-HHHHHHHH
Confidence            46789999999999999999999999873  233457899988876      44433210111     111 11122333


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .++...+.+|.+||+|+++....+++.+..++++
T Consensus        81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~  114 (184)
T TIGR00455        81 EVAKLFVRNGIIVITSFISPYRADRQMVRELIEK  114 (184)
T ss_pred             HHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcC
Confidence            4566678999999999999998888777776654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.91  E-value=5.5e-09  Score=95.03  Aligned_cols=97  Identities=12%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l  290 (400)
                      +|.+|+|+|.|||||||+|+.|.+++  ...+.+++++|+|.+|.      .|...     .....+. ..+..+.+..+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L--~~~g~~~~~LDgD~lR~------~l~~d-----l~fs~~d-R~e~~rr~~~~   66 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRL--FARGIKVYLLDGDNLRH------GLNAD-----LGFSKED-REENIRRIAEV   66 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEEHHHHCT------TTTTT-------SSHHH-HHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEecCcchhh------ccCCC-----CCCCHHH-HHHHHHHHHHH
Confidence            47899999999999999999999998  45678999999999883      33321     1111111 12223445557


Q ss_pred             HHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       291 ie~AL~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      +....++|..||+...-..++.++.+++...
T Consensus        67 A~ll~~~G~ivIva~isp~~~~R~~~R~~~~   97 (156)
T PF01583_consen   67 AKLLADQGIIVIVAFISPYREDREWARELIP   97 (156)
T ss_dssp             HHHHHHTTSEEEEE----SHHHHHHHHHHHH
T ss_pred             HHHHHhCCCeEEEeeccCchHHHHHHHHhCC
Confidence            7778889999999999888888887776665

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK12338 hypothetical protein; Provisional

Probab=98.88  E-value=5.5e-09  Score=104.78  Aligned_cols=117  Identities=18%  Similarity=0.292  Sum_probs=76.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC----------------Chh-
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----------------DDM-  272 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~----------------~d~-  272 (400)
                      ..|.+|+++|+|||||||+|+.||+++|+.      .++++|.+|+  .++..+...-.|                ..+ 
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~------~~~~tD~~r~--~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~   73 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIK------HLIETDFIRE--VVRGIIGKEYAPALHKSSYNAYTALRDKENFK   73 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCe------EEccChHHHH--HHcCCCCcccCchhhcccHHHHhhcCCccccc
Confidence            368999999999999999999999999761      3458888773  222211110000                000 


Q ss_pred             -----hHhHHHH-HHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHH------------HHHhhhhhhhhccCCe
Q 015774          273 -----LQTAELV-HQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIA------------MARNVHKSRYRMGVGY  334 (400)
Q Consensus       273 -----~~aa~~v-~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~------------~arkvh~~~yr~g~gY  334 (400)
                           ...+... ...+...+..++.+++.+|.+|||||.+..|.+......            --++.|..||+.+..|
T Consensus        74 ~~~~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~  153 (319)
T PRK12338         74 NNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAME  153 (319)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhc
Confidence                 0011111 234467777899999999999999999999998874221            0235677888776544

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.88  E-value=6.4e-09  Score=92.51  Aligned_cols=92  Identities=16%  Similarity=0.214  Sum_probs=62.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAASSLLV  292 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~ae~lie  292 (400)
                      +|+|+|+|||||||+++.|+..+.+  .+.++++++.|.++      +.+... +..+..     .  ......+...+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~--~g~~~~~i~~d~~r------~~l~~~~~~~~~~-----~--~~~~~~~~~~a~   65 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQ--RGRPVYVLDGDNVR------HGLNKDLGFSRED-----R--EENIRRIAEVAK   65 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEEcCHHHH------HhhhhccCCCcch-----H--HHHHHHHHHHHH
Confidence            4789999999999999999999832  23367889988776      334321 111110     0  111223334555


Q ss_pred             HHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774          293 TALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       293 ~AL~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      ..+++|.+||+|.++.++..+..+.+++
T Consensus        66 ~l~~~G~~VIid~~~~~~~~R~~~~~l~   93 (149)
T cd02027          66 LLADAGLIVIAAFISPYREDREAARKII   93 (149)
T ss_pred             HHHhCCCEEEEccCCCCHHHHHHHHHhc
Confidence            6778999999999999988887776665

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.84  E-value=2.4e-08  Score=88.69  Aligned_cols=88  Identities=16%  Similarity=0.136  Sum_probs=57.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA  294 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~A  294 (400)
                      |+|+|+|||||||+++.|++.++       ..+++.|+|.....+...+.+.+..+.  ..     ..........+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~-------~~~v~~D~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~   66 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG-------AKFIEGDDLHPAANIEKMSAGIPLNDD--DR-----WPWLQNLNDASTAA   66 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC-------CeEEeCccccChHHHHHHHcCCCCChh--hH-----HHHHHHHHHHHHHH
Confidence            57899999999999999999985       488999999743223333333221111  10     11112233355567


Q ss_pred             HhCCCcEEEECcCCChHHHHHH
Q 015774          295 LNEGRDVIMDGTLSWVPFVEQT  316 (400)
Q Consensus       295 L~eG~dVIIDgT~~~~~~re~~  316 (400)
                      +..|.++|++.|+..+.+++.+
T Consensus        67 l~~~~~~Vi~~t~~~~~~r~~~   88 (163)
T TIGR01313        67 AAKNKVGIITCSALKRHYRDIL   88 (163)
T ss_pred             HhcCCCEEEEecccHHHHHHHH
Confidence            7888888999998877666544

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=4e-08  Score=100.50  Aligned_cols=175  Identities=17%  Similarity=0.168  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHhh
Q 015774          115 VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE-EMKAIRRE  193 (400)
Q Consensus       115 ~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~lie-e~~~i~~~  193 (400)
                      ...|+|+.+              +||.+|++..--  ++++.+|.+..   .++++..-..-++.+...+. |+-.++  
T Consensus        29 ~~~L~eI~~--------------ALLesDV~~~lV--~~l~~nir~~i---~~~~~~~G~nk~r~i~~~vf~eL~kl~--   87 (483)
T KOG0780|consen   29 NTMLKEICR--------------ALLESDVNPRLV--KELRENIRKII---NLEKLASGVNKRRIIQKAVFDELVKLL--   87 (483)
T ss_pred             HHHHHHHHH--------------HHHhccCCHHHH--HHHHHHHHHHh---chhhhccccCHHHHHHHHHHHHHHHHh--
Confidence            448899999              999999995533  34444444333   23334333344455555544 322232  


Q ss_pred             CcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc---C-CCC
Q 015774          194 GESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS---K-GHH  269 (400)
Q Consensus       194 ~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~---~-G~~  269 (400)
                           .+-..++.+....|.+|++.|+.|+||||.+..||..+  ...|..+.++.+|+||..  -+.+|..   . +.|
T Consensus        88 -----dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~--kkkG~K~~LvcaDTFRag--AfDQLkqnA~k~~iP  158 (483)
T KOG0780|consen   88 -----DPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYY--KKKGYKVALVCADTFRAG--AFDQLKQNATKARVP  158 (483)
T ss_pred             -----CCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHH--HhcCCceeEEeecccccc--hHHHHHHHhHhhCCe
Confidence                 22223344446789999999999999999999999998  566778899999999952  2344422   1 111


Q ss_pred             ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          270 DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       270 ~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      -   +. ..........+..-+++.-+++++|||-+|-++...-..+++...++
T Consensus       159 ~---yg-syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v  208 (483)
T KOG0780|consen  159 F---YG-SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQV  208 (483)
T ss_pred             e---Ee-cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHH
Confidence            0   00 00001113455667788999999999999998877666666655443

>COG4639 Predicted kinase [General function prediction only]

Probab=98.80  E-value=1.6e-08  Score=92.38  Aligned_cols=93  Identities=22%  Similarity=0.243  Sum_probs=67.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL  291 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~li  291 (400)
                      +.+++|+|+|||||||+|+..-...         .+++.|+|+.      .+...    .....+........+.+...+
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~~~---------~~lsld~~r~------~lg~~----~~~e~sqk~~~~~~~~l~~~l   62 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFLQN---------YVLSLDDLRL------LLGVS----ASKENSQKNDELVWDILYKQL   62 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCCCc---------ceecHHHHHH------Hhhhc----hhhhhccccHHHHHHHHHHHH
Confidence            5689999999999999999865443         6899888872      22111    001111111122345556678


Q ss_pred             HHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       292 e~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      +..+..|...|+|.|+.++..+..+++++.+.
T Consensus        63 ~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y   94 (168)
T COG4639          63 EQRLRRGKFTIIDATNLRREDRRKLIDLAKAY   94 (168)
T ss_pred             HHHHHcCCeEEEEcccCCHHHHHHHHHHHHHh
Confidence            88999999999999999999999999999874

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.73  E-value=7.9e-08  Score=86.58  Aligned_cols=95  Identities=19%  Similarity=0.191  Sum_probs=59.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ..+.+|+|+|+|||||||+++.|+..+.  ..+.++.++++|.++      +.+... +..... . ...     ...+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~--~~g~~v~~id~D~~~------~~~~~~~~~~~~~-r-~~~-----~~~~~   66 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLR--EAGYPVEVLDGDAVR------TNLSKGLGFSKED-R-DTN-----IRRIG   66 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEcCccHH------HHHhcCCCCChhh-H-HHH-----HHHHH
Confidence            3577999999999999999999999983  234467889999876      333321 111110 0 011     11112


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHH
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~  319 (400)
                      .+.......|..||++++......++.+...
T Consensus        67 ~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~   97 (175)
T PRK00889         67 FVANLLTRHGVIVLVSAISPYRETREEVRAN   97 (175)
T ss_pred             HHHHHHHhCCCEEEEecCCCCHHHHHHHHhh
Confidence            2333345689999999987655555544333

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.71  E-value=7.6e-08  Score=86.74  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=56.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ..+|.+|+++|+|||||||+++.|+..+.  ..+.+.++++.|.++      +.+...+.  +......     ......
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~~~d~~r------~~~~~~~~--~~~~~~~-----~~~~~~   68 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYLDGDELR------EILGHYGY--DKQSRIE-----MALKRA   68 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEecHHHH------hhcCCCCC--CHHHHHH-----HHHHHH
Confidence            35788999999999999999999999983  344567899888765      32322121  1111111     111222


Q ss_pred             HHHHHHHhCCCcEEEECcCCChH
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVP  311 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~  311 (400)
                      .+.....+.|..||+|++.....
T Consensus        69 ~l~~~l~~~g~~VI~~~~~~~~~   91 (176)
T PRK05541         69 KLAKFLADQGMIVIVTTISMFDE   91 (176)
T ss_pred             HHHHHHHhCCCEEEEEeCCcHHH
Confidence            23333457899999999876433

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.67  E-value=1.6e-07  Score=84.64  Aligned_cols=92  Identities=16%  Similarity=0.258  Sum_probs=54.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC-ccccchHHHHHHhcCCCCChhhHhHHHHHH---HHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD-AFKETDVIYRALSSKGHHDDMLQTAELVHQ---SSTDAASS  289 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD-efRe~D~irk~L~~~G~~~d~~~aa~~v~~---~~~~~ae~  289 (400)
                      +|+|.|+|||||||+++.|++.+|+       ++|+.| .+|      +.+... . +...........   .....+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~-------~~is~~d~lr------~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~   65 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGF-------THLSAGDLLR------AEIKSG-S-ENGELIESMIKNGKIVPSEVTVK   65 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCC-------eEEECChHHH------HHHhcC-C-hHHHHHHHHHHCCCcCCHHHHHH
Confidence            5899999999999999999999955       899974 443      333211 0 000000000000   00112223


Q ss_pred             HHHHHHhC--CCcEEEECcCCChHHHHHHHHHH
Q 015774          290 LLVTALNE--GRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       290 lie~AL~e--G~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      ++..++.+  +..+||||...+....+.+...+
T Consensus        66 ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~   98 (183)
T TIGR01359        66 LLKNAIQADGSKKFLIDGFPRNEENLEAWEKLM   98 (183)
T ss_pred             HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHH
Confidence            44445532  67899999998887777665554

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.66  E-value=7.9e-08  Score=103.87  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ..+|.+|+|+|+|||||||+|+.|+..+++  .+.++++|+.|++|      +.+.+. .+    +..+. ....+..+.
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~--~~~~~~~l~~D~~r------~~l~~~-~~----~~~~~-r~~~~~~l~  522 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHA--LGRHTYLLDGDNVR------HGLNRD-LG----FSDAD-RVENIRRVA  522 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHH--cCCCEEEEcChhhh------hccCCC-CC----CCHHH-HHHHHHHHH
Confidence            446999999999999999999999999843  35578999999988      334331 11    11010 012223333


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .++...+++|.+||+|.++.....++.+++++.+
T Consensus       523 ~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~  556 (632)
T PRK05506        523 EVARLMADAGLIVLVSFISPFREERELARALHGE  556 (632)
T ss_pred             HHHHHHHhCCCEEEEECCCCCHHHHHHHHHhccc
Confidence            4556677899999999999998888877766643

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.65  E-value=1.4e-07  Score=87.23  Aligned_cols=99  Identities=16%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc-CCCCChhhHhHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS-KGHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~-~G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      ..+|.+|.|+|.|||||||+++.|+..+.  ..+.+.+++++|.++.      .+.. .+....  ..     ...+..+
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~--~~~~~~~~ld~d~~~~------~~~~~~~~~~~--~~-----~~~~~~l   85 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALH--ELGVSTYLLDGDNVRH------GLCSDLGFSDA--DR-----KENIRRV   85 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH--hCCCCEEEEcCEeHHh------hhhhcCCcCcc--cH-----HHHHHHH
Confidence            46789999999999999999999999873  2355789999998872      2222 111111  11     1111223


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ..++...+.+|..||.+........++.+++++.+
T Consensus        86 ~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~  120 (198)
T PRK03846         86 GEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGE  120 (198)
T ss_pred             HHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHccc
Confidence            33556677899998877666677888888887754

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.64  E-value=6.5e-07  Score=92.17  Aligned_cols=113  Identities=10%  Similarity=0.108  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHh
Q 015774          114 YVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQR-FEKVTKDLKMKRVFSTLVEEMKAIRR  192 (400)
Q Consensus       114 ~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~r-f~~v~~~~~vkr~~~~liee~~~i~~  192 (400)
                      ....+++|++              .|+.++++++..      ..+++.+++.. .+.......+.+.+..++.+   ...
T Consensus       107 ~~~~~~~l~~--------------~L~~~dv~~~~~------~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~---~i~  163 (388)
T PRK12723        107 NHPTILKIED--------------ILRENDFSESYI------KDINEFIKKEFSLSDLDDYDKVRDSVIIYIAK---TIK  163 (388)
T ss_pred             CHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH---Hhh
Confidence            3566889999              999999998888      77777776642 22222223333333333332   211


Q ss_pred             hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCCccccchH
Q 015774          193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAFKETDV  258 (400)
Q Consensus       193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~--~~~~~avvIdaDefRe~D~  258 (400)
                              ...|. .....|.+|++.|++|+||||++..||..+-..  ..+..+.++++|.||....
T Consensus       164 --------~~~~~-~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~  222 (388)
T PRK12723        164 --------CSGSI-IDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK  222 (388)
T ss_pred             --------ccCcc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH
Confidence                    00111 113468899999999999999999999887321  2356789999999995443

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.60  E-value=1.1e-06  Score=97.07  Aligned_cols=139  Identities=11%  Similarity=0.018  Sum_probs=87.0

Q ss_pred             cchHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHH
Q 015774           79 CPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFI  158 (400)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~  158 (400)
                      -+.+.+|..++-+..+-+.+.+..+|....+ ......+.++|++              .||.++++.+..      ..+
T Consensus        89 ~~~~~~l~~El~~lk~~L~~~l~~~~~~~~~-~~~~~~~~~~l~~--------------~Ll~~dv~~~la------~~l  147 (767)
T PRK14723         89 PGAIGDLRGELQSMRGMLERQLAGLLWAAGE-VAGRDPLRASLFR--------------WLLGAGFSGQLA------RAL  147 (767)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccChHHHHHHHH--------------HHHHCCCCHHHH------HHH
Confidence            3567888888766666666656666532111 2355778888999              999999998877      666


Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ++.+.+.     .....+...+.+.+.+...+.           ......-..+.+|.+.|++|+||||++..|+..+-.
T Consensus       148 ~~~l~~~-----~~~~~~~~~l~~~L~~~l~il-----------~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~  211 (767)
T PRK14723        148 LERLPVG-----YDRPAAMAWIRNELATHLPVL-----------RDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVA  211 (767)
T ss_pred             HHHHHhc-----CCHHHHHHHHHHHHHHHhhhc-----------cCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHH
Confidence            6666543     112223333333333211111           011111134789999999999999999999987621


Q ss_pred             cCCC-CCeEEEeCCcccc
Q 015774          239 SGAA-TNAVVVEADAFKE  255 (400)
Q Consensus       239 ~~~~-~~avvIdaDefRe  255 (400)
                       ..+ ..+.+++.|.+|.
T Consensus       212 -~~G~kkV~lit~Dt~Ri  228 (767)
T PRK14723        212 -REGADQLALLTTDSFRI  228 (767)
T ss_pred             -HcCCCeEEEecCcccch
Confidence             233 3678999999994

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.58  E-value=2.5e-07  Score=99.25  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=71.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      .++|.+|+|+|+|||||||+++.|+..+++ ..+.++.++|+|.+|      +.+.+.  . .+... +  .......+.
T Consensus       389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-~~g~~~~~lD~D~vr------~~l~ge--~-~f~~~-e--r~~~~~~l~  455 (568)
T PRK05537        389 HKQGFTVFFTGLSGAGKSTIAKALMVKLME-MRGRPVTLLDGDVVR------KHLSSE--L-GFSKE-D--RDLNILRIG  455 (568)
T ss_pred             cCCCeEEEEECCCCChHHHHHHHHHHHhhh-ccCceEEEeCCcHHH------HhccCC--C-CCCHH-H--HHHHHHHHH
Confidence            467899999999999999999999999963 134457999988775      455442  0 01110 0  011122222


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .++...++.|..||+|.++.....++.+++++++
T Consensus       456 ~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~  489 (568)
T PRK05537        456 FVASEITKNGGIAICAPIAPYRATRREVREMIEA  489 (568)
T ss_pred             HHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhh
Confidence            3455677899999999999999999999888865

>PLN02200 adenylate kinase family protein

Probab=98.57  E-value=6.7e-07  Score=85.75  Aligned_cols=44  Identities=23%  Similarity=0.361  Sum_probs=35.7

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..+..+.|.+|+|.|+|||||||+++.|++.+|+       .+|+.+++
T Consensus        34 ~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~-------~his~gdl   77 (234)
T PLN02200         34 RGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGF-------KHLSAGDL   77 (234)
T ss_pred             ccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhCC-------eEEEccHH
Confidence            333444677899999999999999999999999965       78987443

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.56  E-value=3.2e-07  Score=85.59  Aligned_cols=93  Identities=13%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      ..+|.+|+++|+|||||||+|.+|.+.+  ...|..+.++|+|.+|      ..|... |....  .     ..+..+.+
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L--~~~G~~~y~LDGDnvR------~gL~~dLgFs~e--d-----R~eniRRv   84 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKL--FAKGYHVYLLDGDNVR------HGLNRDLGFSRE--D-----RIENIRRV   84 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHH--HHcCCeEEEecChhHh------hcccCCCCCChH--H-----HHHHHHHH
Confidence            4678999999999999999999999999  4678899999999887      566542 32211  1     12223445


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHH
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQT  316 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~  316 (400)
                      ..++....++|.-||+--.-.....+++.
T Consensus        85 aevAkll~daG~iviva~ISP~r~~R~~a  113 (197)
T COG0529          85 AEVAKLLADAGLIVIVAFISPYREDRQMA  113 (197)
T ss_pred             HHHHHHHHHCCeEEEEEeeCccHHHHHHH
Confidence            55666677788776665444433333333

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.55  E-value=1.2e-06  Score=92.51  Aligned_cols=133  Identities=8%  Similarity=0.040  Sum_probs=85.2

Q ss_pred             HHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHh
Q 015774           83 CKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAAT  162 (400)
Q Consensus        83 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      ..|..++-...+.+.+.+..++.++..   .+....+||++              .|+.++++.+.+      ..+++.+
T Consensus       166 ~~l~~El~~lr~~l~~~~~~l~~~~~~---~~~p~~~~l~~--------------~Ll~~dv~~~la------~~l~~~l  222 (484)
T PRK06995        166 DTVMQELRSLRGMLEEQLASLAWGERQ---RRDPVRAALLK--------------HLLAAGFSAQLV------RMLVDNL  222 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc---cccHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHH
Confidence            445666655566666666666643321   45677799999              999999998888      6777766


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774          163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA  242 (400)
Q Consensus       163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~  242 (400)
                      ++..     ....+...+...+++.....           .........+.+|+|.|++|+||||++..|+..+-. ..+
T Consensus       223 ~~~~-----~~~~~~~~l~~~l~~~l~~~-----------~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~-~~G  285 (484)
T PRK06995        223 PEGD-----DAEAALDWVQSALAKNLPVL-----------DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM-RHG  285 (484)
T ss_pred             Hhhh-----chhHHHHHHHHHHHHHHhhc-----------cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH-hcC
Confidence            5532     11233444444444322111           001111235689999999999999999999987632 222


Q ss_pred             -CCeEEEeCCcccc
Q 015774          243 -TNAVVVEADAFKE  255 (400)
Q Consensus       243 -~~avvIdaDefRe  255 (400)
                       ..+.+|+.|.+|.
T Consensus       286 ~~kV~LI~~Dt~Ri  299 (484)
T PRK06995        286 ASKVALLTTDSYRI  299 (484)
T ss_pred             CCeEEEEeCCccch
Confidence             3678899999984

>PRK14532 adenylate kinase; Provisional

Probab=98.55  E-value=2.4e-07  Score=84.27  Aligned_cols=93  Identities=24%  Similarity=0.257  Sum_probs=53.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCC----hhhHhHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD----DMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~----d~~~aa~~v~~~~~~~ae~  289 (400)
                      -|+|.|+|||||||+++.|++.+|+       .+|+.|++-.     +.+.......    .....+..+..   ..+..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~-------~~is~~d~lr-----~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~   66 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGM-------VQLSTGDMLR-----AAIASGSELGQRVKGIMDRGELVSD---EIVIA   66 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC-------eEEeCcHHHH-----HHHHcCCHHHHHHHHHHHCCCccCH---HHHHH
Confidence            3789999999999999999999965       8999855431     2221100000    00000000000   11112


Q ss_pred             HHHHHH---hCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          290 LLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       290 lie~AL---~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      ++...+   ..|..+|+||...+...++.+.+++.
T Consensus        67 ~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~  101 (188)
T PRK14532         67 LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLA  101 (188)
T ss_pred             HHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHH
Confidence            222222   35778999999998887777766554

>PRK14527 adenylate kinase; Provisional

Probab=98.55  E-value=7.3e-07  Score=81.77  Aligned_cols=99  Identities=14%  Similarity=0.118  Sum_probs=57.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHH---HHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ---SSTD  285 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~---~~~~  285 (400)
                      .+.|.+|+|.|+|||||||+++.|++++++       .+++.|++-     ++.+... . +...........   ....
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~-------~~is~gd~~-----r~~~~~~-~-~~~~~~~~~~~~g~~~p~~   68 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGL-------KKLSTGDIL-----RDHVARG-T-ELGQRAKPIMEAGDLVPDE   68 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCC-------CCCCccHHH-----HHHHhcC-c-HHHHHHHHHHHcCCCCcHH
Confidence            357889999999999999999999999965       788875543     2222211 0 000000000000   0011


Q ss_pred             HHHHHHHHHHhC--CCcEEEECcCCChHHHHHHHHHHH
Q 015774          286 AASSLLVTALNE--GRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       286 ~ae~lie~AL~e--G~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      ....++...+.+  +..+||||...+...++.+..+++
T Consensus        69 ~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~  106 (191)
T PRK14527         69 LILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLE  106 (191)
T ss_pred             HHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHH
Confidence            233344444543  467999997777776665555543

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=6.2e-07  Score=82.29  Aligned_cols=95  Identities=18%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC-ChhhHhHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~-~d~~~aa~~v~~~~~~~a  287 (400)
                      ++.|-+|++.|++||||||++++|+++++|       -++++|+|.......++-.  |.+ +|..++.++-      .+
T Consensus         9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~-------~F~dgDd~Hp~~NveKM~~--GipLnD~DR~pWL~------~i   73 (191)
T KOG3354|consen    9 GPFKYVIVVMGVSGSGKSTIGKALSEELGL-------KFIDGDDLHPPANVEKMTQ--GIPLNDDDRWPWLK------KI   73 (191)
T ss_pred             CCCceeEEEEecCCCChhhHHHHHHHHhCC-------cccccccCCCHHHHHHHhc--CCCCCcccccHHHH------HH
Confidence            466779999999999999999999999988       7999999996444333222  322 2222222221      11


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHH
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIA  318 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~  318 (400)
                      ...+..++..|.-||+-+......||+-+..
T Consensus        74 ~~~~~~~l~~~q~vVlACSaLKk~YRdILr~  104 (191)
T KOG3354|consen   74 AVELRKALASGQGVVLACSALKKKYRDILRH  104 (191)
T ss_pred             HHHHHHHhhcCCeEEEEhHHHHHHHHHHHHh
Confidence            1123336669999999999998888876655

>PRK04195 replication factor C large subunit; Provisional

Probab=98.46  E-value=4.6e-07  Score=94.95  Aligned_cols=79  Identities=22%  Similarity=0.346  Sum_probs=66.1

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.|||++|++++.+.+++..+..|++.|..                   +..+..+||.|+||+||||+|..|+++++|
T Consensus         5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~-------------------g~~~~~lLL~GppG~GKTtla~ala~el~~   65 (482)
T PRK04195          5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLK-------------------GKPKKALLLYGPPGVGKTSLAHALANDYGW   65 (482)
T ss_pred             hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc-------------------CCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            5789999999999999999999999998542                   233678999999999999999999999976


Q ss_pred             cCCCCCeEEEeCCccccchHHHH
Q 015774          239 SGAATNAVVVEADAFKETDVIYR  261 (400)
Q Consensus       239 ~~~~~~avvIdaDefRe~D~irk  261 (400)
                           .++.+++.+.+..+.+..
T Consensus        66 -----~~ielnasd~r~~~~i~~   83 (482)
T PRK04195         66 -----EVIELNASDQRTADVIER   83 (482)
T ss_pred             -----CEEEEcccccccHHHHHH
Confidence                 778888877775444433

>PRK13948 shikimate kinase; Provisional

Probab=98.43  E-value=7.1e-07  Score=82.78  Aligned_cols=39  Identities=23%  Similarity=0.405  Sum_probs=34.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.|..|+|.|.|||||||+++.|++.+|+       .+||+|.+.
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~D~~i   45 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALML-------HFIDTDRYI   45 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEECCHHH
Confidence            457889999999999999999999999976       688999765

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=4.1e-06  Score=87.83  Aligned_cols=108  Identities=22%  Similarity=0.244  Sum_probs=76.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH-------hcCCCCChhhHhHHHHH-
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL-------SSKGHHDDMLQTAELVH-  280 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L-------~~~G~~~d~~~aa~~v~-  280 (400)
                      .+.|-+|.++|.+|.||||-...|+-.+  -++.-.+.+...|+||.-.+  ++|       ...  ++++...-+.-| 
T Consensus       375 ~krPYVi~fvGVNGVGKSTNLAKIayWL--lqNkfrVLIAACDTFRsGAv--EQLrtHv~rl~~l--~~~~v~lfekGYg  448 (587)
T KOG0781|consen  375 RKRPYVISFVGVNGVGKSTNLAKIAYWL--LQNKFRVLIAACDTFRSGAV--EQLRTHVERLSAL--HGTMVELFEKGYG  448 (587)
T ss_pred             cCCCeEEEEEeecCccccchHHHHHHHH--HhCCceEEEEeccchhhhHH--HHHHHHHHHHHHh--ccchhHHHhhhcC
Confidence            4689999999999999999999999877  45666888899999996332  222       111  001000000000 


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          281 QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       281 ~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ......+...++.|.++|+|||+-+|.++...-+++|.-+.+
T Consensus       449 kd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k  490 (587)
T KOG0781|consen  449 KDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAK  490 (587)
T ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHH
Confidence            112345667888999999999999999999988888877665

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.43  E-value=7.7e-07  Score=85.08  Aligned_cols=96  Identities=25%  Similarity=0.273  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSLLV  292 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae~lie  292 (400)
                      +|+++|.|||||||+|+.|++.+  +...-.+.++..|..+-      .+..+  . .+.  ...++.++ ..-+..++.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L--~~~i~~vi~l~kdy~~~------i~~DE--s-lpi--~ke~yres~~ks~~rlld   69 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKEL--RQEIWRVIHLEKDYLRG------ILWDE--S-LPI--LKEVYRESFLKSVERLLD   69 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHH--HHhhhhccccchhhhhh------eeccc--c-cch--HHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999998  45555778888754431      01111  0 000  01122222 333444777


Q ss_pred             HHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          293 TALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       293 ~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      .|++ .+-||+|+|+--..+|-++.-.+.+.
T Consensus        70 Salk-n~~VIvDdtNYyksmRrqL~ceak~~   99 (261)
T COG4088          70 SALK-NYLVIVDDTNYYKSMRRQLACEAKER   99 (261)
T ss_pred             HHhc-ceEEEEecccHHHHHHHHHHHHHHhc
Confidence            7887 78899999999999999998887763

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.42  E-value=1.2e-06  Score=81.88  Aligned_cols=99  Identities=19%  Similarity=0.272  Sum_probs=62.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc---C-CCC----ChhhHhHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS---K-GHH----DDMLQTAELVHQSS  283 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~---~-G~~----~d~~~aa~~v~~~~  283 (400)
                      |.+|++.||+|+||||++.+||.++.  ..+..+.+|++|.+|....  ++|..   . +.+    .......       
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~--eQL~~~a~~l~vp~~~~~~~~~~~-------   69 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAV--EQLKTYAEILGVPFYVARTESDPA-------   69 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHH--HHHHHHHHHHTEEEEESSTTSCHH-------
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHH--HHHHHHHHHhccccchhhcchhhH-------
Confidence            88999999999999999999999984  3477899999999995322  33311   1 110    0000011       


Q ss_pred             HHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          284 TDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       284 ~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                       ..+...++..-.++.|+|+-+|.++.+.-...++..++
T Consensus        70 -~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~  107 (196)
T PF00448_consen   70 -EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKK  107 (196)
T ss_dssp             -HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHH
Confidence             12233455566788998888888766654444444433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.41  E-value=1.8e-06  Score=77.46  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +|+|.|+|||||||+++.|++.+|+       .+++.|+
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~g~-------~~~~~g~   36 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKYGF-------THLSTGD   36 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEEeHHH
Confidence            7888999999999999999999865       7888754

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14531 adenylate kinase; Provisional

Probab=98.40  E-value=1.3e-06  Score=79.88  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=53.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC-CccccchHHHHHHhcCCCCCh----hhHhHHHHHHHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA-DAFKETDVIYRALSSKGHHDD----MLQTAELVHQSSTDAA  287 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda-DefRe~D~irk~L~~~G~~~d----~~~aa~~v~~~~~~~a  287 (400)
                      .-|+|.|+|||||||+++.|++.+|+       .+|+. |.+|      +.+......+.    ....+..+-   ..++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~-------~~is~gd~lr------~~~~~~~~~~~~~~~~~~~G~~v~---d~l~   66 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGL-------RHLSTGDLLR------SEVAAGSALGQEAEAVMNRGELVS---DALV   66 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC-------CeEecccHHH------HHHhcCCHHHHHHHHHHHcCCCCC---HHHH
Confidence            35899999999999999999999965       78987 4443      33322100000    000000000   1112


Q ss_pred             HHHHHHHHh--CCCcEEEECcCCChHHHHHHHHHHH
Q 015774          288 SSLLVTALN--EGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       288 e~lie~AL~--eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      ..++...+.  .+..+||||...+....+.+...+.
T Consensus        67 ~~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~  102 (183)
T PRK14531         67 LAIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLE  102 (183)
T ss_pred             HHHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHH
Confidence            222222332  3567999999998777766555443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.40  E-value=2e-07  Score=78.20  Aligned_cols=33  Identities=27%  Similarity=0.528  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +|+|+|+|||||||+++.|++.+|+       .+++.|++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~-------~~i~~d~~   33 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGF-------PVISMDDL   33 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTC-------EEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC-------eEEEecce
Confidence            6899999999999999999999965       78888884

...

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.39  E-value=7.7e-07  Score=87.40  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~  293 (400)
                      +|+|+|.|||||||+++.|.+.+  ++.+..+++++-|++.        +.... ..+. ...    ...-....+.+++
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~--~~~~~~v~~i~~~~~~--------~~~~~-y~~~-~~E----k~~R~~l~s~v~r   66 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYL--EEKGKEVVIISDDSLG--------IDRND-YADS-KKE----KEARGSLKSAVER   66 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHH--HHTT--EEEE-THHHH---------TTSS-S--G-GGH----HHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH--HhcCCEEEEEcccccc--------cchhh-hhch-hhh----HHHHHHHHHHHHH
Confidence            79999999999999999999987  4445577888755443        11110 0011 111    1122334557777


Q ss_pred             HHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       294 AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      ++....-||+|+++--.++|-++..+|++.
T Consensus        67 ~ls~~~iVI~Dd~nYiKg~RYelyclAr~~   96 (270)
T PF08433_consen   67 ALSKDTIVILDDNNYIKGMRYELYCLARAY   96 (270)
T ss_dssp             HHTT-SEEEE-S---SHHHHHHHHHHHHHT
T ss_pred             hhccCeEEEEeCCchHHHHHHHHHHHHHHc
Confidence            999999999999999999999999998874

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.38  E-value=8.1e-06  Score=84.27  Aligned_cols=103  Identities=14%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH-HHHHHhcC-CCCChhhHhHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV-IYRALSSK-GHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~-irk~L~~~-G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      ..+.+++++|++|+||||++..|+..+  ...+..+.+|++|.+|.... .++..... +.+-......    ..+    
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp----~dL----  273 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSP----AEL----  273 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCH----HHH----
Confidence            468899999999999999999999876  34466788999999996322 11222221 2110000011    111    


Q ss_pred             HHHHHHHH-hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          288 SSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       288 e~lie~AL-~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ...+..+. ..++++||-+|.++.+.-.+.+....+
T Consensus       274 ~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~  309 (407)
T PRK12726        274 EEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISA  309 (407)
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHH
Confidence            11222232 267888888888775554555554443

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.37  E-value=1.9e-06  Score=75.93  Aligned_cols=38  Identities=26%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|..|+|+|+|||||||+++.|++.+|+       .+++.|.+.
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~-------~~~d~d~~~   39 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGY-------DFIDTDHLI   39 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEChHHH
Confidence            46789999999999999999999999965       788988765

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.35  E-value=3.9e-06  Score=80.50  Aligned_cols=106  Identities=18%  Similarity=0.235  Sum_probs=64.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC----ChhhHhHHHHHHH-H
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----DDMLQTAELVHQS-S  283 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~----~d~~~aa~~v~~~-~  283 (400)
                      ...+.+|+|+|+||.|||++|+.|..-+.|  .|-++-+++..+.|      +...+....    ++....+....+. .
T Consensus         9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w--~g~~~~vFn~g~yR------R~~~~~~~~~~ff~p~n~~~~~~R~~~a   80 (222)
T PF01591_consen    9 HAGKLVIVMVGLPARGKSYIARKLCRYLNW--LGVKTKVFNVGDYR------RKLSGAPQDAEFFDPDNEEAKKLREQIA   80 (222)
T ss_dssp             ----EEEEEESSTTSSHHHHHHHHHHHHHH--TT--EEEEEHHHHH------HHHHSS-S-GGGGSTT-HHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhh--cCCCcceeecccce------ecccccccccccCCCCChHHHHHHHHHH
Confidence            356889999999999999999999999988  35567778765555      444433110    1111222223333 3


Q ss_pred             HHHHHHHHHHHH-hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          284 TDAASSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       284 ~~~ae~lie~AL-~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ...++.++.... +.|.--|+|+|+.+...|..+++.+.+
T Consensus        81 ~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~  120 (222)
T PF01591_consen   81 KEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKE  120 (222)
T ss_dssp             HHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            455566666666 577788999999999999988887654

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.34  E-value=5.5e-07  Score=82.94  Aligned_cols=87  Identities=24%  Similarity=0.289  Sum_probs=64.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l  290 (400)
                      .|.+.+|+|++||||||+...+...+.     ++.++||+|++-      .++++.    ++...    .-...+.+...
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~-----~~~~~VN~D~iA------~~i~p~----~p~~~----~i~A~r~ai~~   61 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLL-----PGIVFVNADEIA------AQISPD----NPTSA----AIQAARVAIDR   61 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhc-----CCeEEECHHHHh------hhcCCC----CchHH----HHHHHHHHHHH
Confidence            378999999999999999888666652     478999988765      555543    11111    11234566778


Q ss_pred             HHHHHhCCCcEEEECcCCChHHHHHH
Q 015774          291 LVTALNEGRDVIMDGTLSWVPFVEQT  316 (400)
Q Consensus       291 ie~AL~eG~dVIIDgT~~~~~~re~~  316 (400)
                      +..+++.|.++.+|+|++.+.+++.+
T Consensus        62 i~~~I~~~~~F~~ETtLS~~s~~~~i   87 (187)
T COG4185          62 IARLIDLGRPFIAETTLSGPSILELI   87 (187)
T ss_pred             HHHHHHcCCCcceEEeeccchHHHHH
Confidence            88899999999999999998876544

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.33  E-value=7.2e-06  Score=74.08  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=52.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHH--H-HHHHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVH--Q-SSTDAASSLL  291 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~--~-~~~~~ae~li  291 (400)
                      |+|.|+|||||||+++.|++.+|+       .+|+.|++-     ++.+....  ...........  . .....+..++
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~-------~~i~~~~l~-----~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~   67 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGL-------PHISTGDLL-----REEIASGT--ELGKKAKEYIDSGKLVPDEIVIKLL   67 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC-------eEEECcHHH-----HHHHhcCC--hHHHHHHHHHHcCCccCHHHHHHHH
Confidence            789999999999999999999855       899987653     12222110  00000000000  0 0012233455


Q ss_pred             HHHHhC---CCcEEEECcCCChHHHHHHHHH
Q 015774          292 VTALNE---GRDVIMDGTLSWVPFVEQTIAM  319 (400)
Q Consensus       292 e~AL~e---G~dVIIDgT~~~~~~re~~i~~  319 (400)
                      ...+.+   +..+|+||........+.+...
T Consensus        68 ~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~   98 (194)
T cd01428          68 KERLKKPDCKKGFILDGFPRTVDQAEALDEL   98 (194)
T ss_pred             HHHHhcccccCCEEEeCCCCCHHHHHHHHHH
Confidence            556654   6789999987766555444333

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01351 adk adenylate kinases

Probab=98.33  E-value=2e-06  Score=80.14  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=51.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCC----hhhHhHHHHHHHHHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD----DMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~----d~~~aa~~v~~~~~~~ae~l  290 (400)
                      |+|.|+|||||||+++.|++.+|+       .+|+.+++-     ++.+.......    .....+..+-   ...+..+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~-------~~is~gdll-----r~~~~~~~~~~~~~~~~~~~g~~vp---~~~~~~l   66 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGL-------PHISTGDLL-----RAEIKAGTPLGKKAKEYMEKGELVP---DEIVNQL   66 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC-------CeeehhHHH-----HHhhccccHHHHHHHHHHhCCCCCC---HHHHHHH
Confidence            788999999999999999999955       899875432     23232110000    0000000000   1122334


Q ss_pred             HHHHHhC----CCcEEEECcCCChHHHHHHHHH
Q 015774          291 LVTALNE----GRDVIMDGTLSWVPFVEQTIAM  319 (400)
Q Consensus       291 ie~AL~e----G~dVIIDgT~~~~~~re~~i~~  319 (400)
                      +...+.+    +..+||||........+.+.+.
T Consensus        67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~   99 (210)
T TIGR01351        67 VKERLTQNQDNENGFILDGFPRTLSQAEALDAL   99 (210)
T ss_pred             HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHH
Confidence            4445544    6789999987776655555443

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.33  E-value=6.6e-06  Score=74.34  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=48.6

Q ss_pred             EcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhC
Q 015774          218 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNE  297 (400)
Q Consensus       218 ~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~e  297 (400)
                      .|+|||||||+++.|+..+|.       +++++|.+.....+++.+.+.... +...     ...+..............
T Consensus         1 ~G~sGsGKSTla~~la~~l~~-------~~~~~d~~~~~~~~~~~~~g~~~~-~~~~-----~~~~~~~~~~~~~~~~~~   67 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHA-------AFLDGDFLHPRRNIEKMASGEPLN-DDDR-----KPWLQALNDAAFAMQRTN   67 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCC-------eEEeCccCCchhhhccccCCCCCC-hhhH-----HHHHHHHHHHHHHHHHcC
Confidence            499999999999999999954       899999875322233333222111 1100     011111111122223345


Q ss_pred             CCcEEEECcCCChHHHHHHH
Q 015774          298 GRDVIMDGTLSWVPFVEQTI  317 (400)
Q Consensus       298 G~dVIIDgT~~~~~~re~~i  317 (400)
                      |.+||+ .|+....+++.+.
T Consensus        68 ~~~viv-~s~~~~~~r~~~~   86 (163)
T PRK11545         68 KVSLIV-CSALKKHYRDLLR   86 (163)
T ss_pred             CceEEE-EecchHHHHHHHH
Confidence            666666 8998877765543

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.30  E-value=2.4e-06  Score=77.67  Aligned_cols=89  Identities=15%  Similarity=0.084  Sum_probs=61.2

Q ss_pred             EcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhC
Q 015774          218 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNE  297 (400)
Q Consensus       218 ~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~e  297 (400)
                      .|++||||||++.+||+++|+       .+|++|+|.....+.++-.+. ..+|...+.++  +    .+...+......
T Consensus         1 MGVsG~GKStvg~~lA~~lg~-------~fidGDdlHp~aNi~KM~~Gi-PL~DdDR~pWL--~----~l~~~~~~~~~~   66 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGA-------KFIDGDDLHPPANIEKMSAGI-PLNDDDRWPWL--E----ALGDAAASLAQK   66 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCC-------ceecccccCCHHHHHHHhCCC-CCCcchhhHHH--H----HHHHHHHHhhcC
Confidence            389999999999999999976       899999999766665543332 12233333322  1    111223335567


Q ss_pred             CCcEEEECcCCChHHHHHHHHHH
Q 015774          298 GRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       298 G~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      |.++||-+....+.||+.++.-.
T Consensus        67 ~~~~vi~CSALKr~YRD~LR~~~   89 (161)
T COG3265          67 NKHVVIACSALKRSYRDLLREAN   89 (161)
T ss_pred             CCceEEecHHHHHHHHHHHhccC
Confidence            77899999999999988876544

>PRK01184 hypothetical protein; Provisional

Probab=98.29  E-value=8.4e-06  Score=73.88  Aligned_cols=34  Identities=26%  Similarity=0.247  Sum_probs=27.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC-ccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD-AFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD-efR  254 (400)
                      .+|+|+|+|||||||+++ +++++|+       .++++| .+|
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~-------~~i~~~d~lr   36 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGI-------PVVVMGDVIR   36 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCC-------cEEEhhHHHH
Confidence            489999999999999987 7888855       788864 344

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.28  E-value=1.2e-05  Score=83.93  Aligned_cols=48  Identities=15%  Similarity=0.345  Sum_probs=38.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV  258 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~  258 (400)
                      ..|.++++.|++||||||++..|+..+.. ..+..+.++++|.+|....
T Consensus       221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G~~V~Lit~Dt~R~aA~  268 (432)
T PRK12724        221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFL-HMGKSVSLYTTDNYRIAAI  268 (432)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH-hcCCeEEEecccchhhhHH
Confidence            35789999999999999999999986521 2345788999999996433

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.28  E-value=1.6e-05  Score=82.59  Aligned_cols=96  Identities=16%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             hhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEE
Q 015774          138 LMISQVLSVESEKKTKLKDFIMAATRKQRFEKV-TKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLL  216 (400)
Q Consensus       138 ~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v-~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lIL  216 (400)
                      .|+.+++..+-.      ..+++.+... +... ..+  .......+.+.+.....      .    +. .....|.+|+
T Consensus       186 ~L~~~dV~~~~~------~~ll~~~~~~-~~~~~~~~--~~~~~~~l~~~l~~~l~------~----~~-~~~~~~~vI~  245 (436)
T PRK11889        186 MLEQNDVEQYFI------HAYAEKLKVK-FENATMIT--EEEVIEYILEDMRSHFN------T----EN-VFEKEVQTIA  245 (436)
T ss_pred             HHHHCCCCHHHH------HHHHHHHHhh-hcccccCC--HHHHHHHHHHHHHHHhc------c----cc-ccccCCcEEE
Confidence            778888876655      6666666542 2221 111  12333334444332221      0    10 0134578999


Q ss_pred             EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       217 L~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ++|++|+||||++..||..+  ...+..+.++++|.+|.
T Consensus       246 LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~Ri  282 (436)
T PRK11889        246 LIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRI  282 (436)
T ss_pred             EECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcch
Confidence            99999999999999999987  45567888999999983

>PRK06696 uridine kinase; Validated

Probab=98.27  E-value=2.2e-06  Score=80.74  Aligned_cols=51  Identities=20%  Similarity=0.282  Sum_probs=40.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYR  261 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk  261 (400)
                      ...|.+|.|+|+|||||||+|+.|++.++  ..+..+++++.|+|...+..+.
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~--~~g~~v~~~~~Ddf~~~~~~r~   69 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIK--KRGRPVIRASIDDFHNPRVIRY   69 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeccccccCCHHHHH
Confidence            45789999999999999999999999983  2234678888999986554433

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.25  E-value=6.5e-06  Score=76.96  Aligned_cols=33  Identities=27%  Similarity=0.220  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .|+|.|+|||||||+++.|++.+++       .+|+.+++
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~-------~~is~~dl   34 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGI-------PHISTGDM   34 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEEECCcc
Confidence            4899999999999999999999965       89997554

>PRK13946 shikimate kinase; Provisional

Probab=98.24  E-value=6.2e-06  Score=75.54  Aligned_cols=36  Identities=31%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..|+|.|+|||||||+++.|++++|+       .++|+|..
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~-------~~id~D~~   44 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGL-------PFLDADTE   44 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeECcCHH
Confidence            5678999999999999999999999977       69998864

>PRK06217 hypothetical protein; Validated

Probab=98.24  E-value=2.1e-06  Score=78.29  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .-|+|.|+|||||||+++.|++.+++       .+++.|++.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~-------~~~~~D~~~   36 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDI-------PHLDTDDYF   36 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC-------cEEEcCcee
Confidence            35899999999999999999999965       699999876

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.24  E-value=2.5e-06  Score=75.41  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +|.++|+|||||||+++.|++.+|+       .+++.|++
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~-------~~~~~~~~   34 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSL-------KLISAGDI   34 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC-------ceecHHHH
Confidence            7999999999999999999999965       68887643

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK07261 topology modulation protein; Provisional

Probab=98.23  E-value=2.1e-06  Score=78.20  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -|+|.|+|||||||+++.|+..++.       .+++.|.+.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~-------~~i~~D~~~   35 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNC-------PVLHLDTLH   35 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC-------CeEecCCEE
Confidence            3789999999999999999999854       577888775

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.23  E-value=5.9e-06  Score=71.80  Aligned_cols=33  Identities=33%  Similarity=0.364  Sum_probs=29.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |+|+|+|||||||+++.|++.++|       .+++.|.+.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~-------~~~~~d~~~   34 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGL-------PFVDLDELI   34 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC-------CEEEchHHH
Confidence            789999999999999999999977       688988765

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.21  E-value=6.9e-07  Score=83.71  Aligned_cols=88  Identities=25%  Similarity=0.410  Sum_probs=58.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccc--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTA  276 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa  276 (400)
                      .+.+|+|+||+|+||||+.+.|.++.++              +.+|.++.+++.|+|.      +.+.. +   .+..++
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~------~~i~~-~---~fLE~a   72 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFE------ELIER-D---EFLEWA   72 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHH------HHHhc-C---CcEEEE
Confidence            5789999999999999999999998765              4566777888877775      22222 1   111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCC
Q 015774          277 ELVHQSSTDAASSLLVTALNEGRDVIMDGTLSW  309 (400)
Q Consensus       277 ~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~  309 (400)
                      . +|...+.....-++.++++|.+||+|-..-.
T Consensus        73 ~-~~gnyYGT~~~~ve~~~~~G~~vildId~qG  104 (191)
T COG0194          73 E-YHGNYYGTSREPVEQALAEGKDVILDIDVQG  104 (191)
T ss_pred             E-EcCCcccCcHHHHHHHHhcCCeEEEEEehHH
Confidence            1 1122222233356679999999999976543

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.20  E-value=2e-05  Score=77.48  Aligned_cols=46  Identities=15%  Similarity=0.307  Sum_probs=36.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ..|.+|+++|++|+||||++..|+..+-....+..+.+|+.|.+|.
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~  237 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI  237 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence            4678999999999999999999998872100125789999999984

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.18  E-value=3.7e-06  Score=82.30  Aligned_cols=67  Identities=24%  Similarity=0.329  Sum_probs=56.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.|||+.|++++.++.++..+..+++.                      .+.|.++++.|+||+||||++..+++.++ 
T Consensus        12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~lll~G~~G~GKT~la~~l~~~~~-   68 (316)
T PHA02544         12 EQKYRPSTIDECILPAADKETFKSIVKK----------------------GRIPNMLLHSPSPGTGKTTVAKALCNEVG-   68 (316)
T ss_pred             eeccCCCcHHHhcCcHHHHHHHHHHHhc----------------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC-
Confidence            4789999999999999998888877764                      45688999999999999999999999874 


Q ss_pred             cCCCCCeEEEeCCc
Q 015774          239 SGAATNAVVVEADA  252 (400)
Q Consensus       239 ~~~~~~avvIdaDe  252 (400)
                          .+...+++.+
T Consensus        69 ----~~~~~i~~~~   78 (316)
T PHA02544         69 ----AEVLFVNGSD   78 (316)
T ss_pred             ----ccceEeccCc
Confidence                3667777665

>PRK04182 cytidylate kinase; Provisional

Probab=98.18  E-value=3.5e-06  Score=74.95  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +|+|+|+|||||||+++.|++++|+       .+++.|++
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~-------~~id~~~~   34 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGL-------KHVSAGEI   34 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC-------cEecHHHH
Confidence            7899999999999999999999966       68886543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.18  E-value=4.4e-06  Score=74.97  Aligned_cols=100  Identities=19%  Similarity=0.244  Sum_probs=59.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH-HHHHHhcC-CCCC-hhhHhHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV-IYRALSSK-GHHD-DMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~-irk~L~~~-G~~~-d~~~aa~~v~~~~~~~ae~l  290 (400)
                      ++++.|+||+||||++..++..+  .+.+..+.+++.|.++.... ....+... +.+- ......     .........
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~--~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~   74 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGK-----DPVSIAKRA   74 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCC-----CHHHHHHHH
Confidence            68899999999999999999887  34456788999999884322 11111211 1100 000000     011122344


Q ss_pred             HHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       291 ie~AL~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      +..+...++++||.+|.+...+-...+...
T Consensus        75 ~~~~~~~~~d~viiDt~g~~~~~~~~l~~l  104 (173)
T cd03115          75 IEHAREENFDVVIVDTAGRLQIDENLMEEL  104 (173)
T ss_pred             HHHHHhCCCCEEEEECcccchhhHHHHHHH
Confidence            555777899888888877654433444433

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=7.5e-06  Score=83.99  Aligned_cols=61  Identities=20%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+-+.|||++|+++++++.++..+..+++.                      .+-|+.+++.|+||+||||+|..+|+.
T Consensus         4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~----------------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~   61 (397)
T PRK14955          4 QVIARKYRPKKFADITAQEHITRTIQNSLRM----------------------GRVGHGYIFSGLRGVGKTTAARVFAKA   61 (397)
T ss_pred             HHHHHhcCCCcHhhccChHHHHHHHHHHHHh----------------------CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999999988877765                      467889999999999999999999999


Q ss_pred             ccc
Q 015774          236 SFW  238 (400)
Q Consensus       236 lg~  238 (400)
                      +.+
T Consensus        62 l~c   64 (397)
T PRK14955         62 VNC   64 (397)
T ss_pred             hcC
Confidence            976

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.17  E-value=5.5e-06  Score=71.15  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|+|+|+|||||||+|+.|++.+++       .+++.|.+.
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~-------~~~~~~~i~   34 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGL-------PYLDTGGIR   34 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC-------ceeccccCC
Confidence            5899999999999999999999955       688888654

>PLN02674 adenylate kinase

Probab=98.16  E-value=7.3e-06  Score=79.62  Aligned_cols=96  Identities=22%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC---CC-CChhhHhHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---GH-HDDMLQTAELVHQSSTD  285 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~---G~-~~d~~~aa~~v~~~~~~  285 (400)
                      +.+..|++.|+|||||||+++.|++.+++       .+|+++++-     +..+...   |. .......+..+-+   .
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~-------~his~Gdll-----R~~i~~~s~~g~~i~~~~~~G~lvpd---~   93 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCL-------CHLATGDML-----RAAVAAKTPLGIKAKEAMDKGELVSD---D   93 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCC-------cEEchhHHH-----HHHHhccChhhHHHHHHHHcCCccCH---H
Confidence            33456889999999999999999999966       899876543     2333221   00 0000011111111   2


Q ss_pred             HHHHHHHHHHhC---CCcEEEECcCCChHHHHHHHHHH
Q 015774          286 AASSLLVTALNE---GRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       286 ~ae~lie~AL~e---G~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      .+..++..++.+   +..+|+||.-.+....+.+-.+.
T Consensus        94 iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l  131 (244)
T PLN02674         94 LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEML  131 (244)
T ss_pred             HHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHH
Confidence            223344445533   46799999988877666554443

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.16  E-value=1.6e-05  Score=80.76  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc-----c------hHHHHH----Hhc--------C--CC
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-----T------DVIYRA----LSS--------K--GH  268 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe-----~------D~irk~----L~~--------~--G~  268 (400)
                      +++++|+|||||||+++.|+..+.. ..+..+.+++.|+|..     .      ..+|+.    |..        .  |.
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~-~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~   79 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRR-ERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGS   79 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHh-ccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            4689999999999999999987731 3455789999999872     1      111111    111        0  11


Q ss_pred             -CCh-hhH----hHHHHH---H---------HHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          269 -HDD-MLQ----TAELVH---Q---------SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       269 -~~d-~~~----aa~~v~---~---------~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                       ... +..    ....+.   +         ........++..+++.+.-||+|++|....+|.++..+++..
T Consensus        80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~  152 (340)
T TIGR03575        80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKY  152 (340)
T ss_pred             cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHh
Confidence             000 000    000000   0         012234556777788888899999999999999999998863

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK14530 adenylate kinase; Provisional

Probab=98.16  E-value=1.4e-05  Score=74.73  Aligned_cols=89  Identities=18%  Similarity=0.172  Sum_probs=50.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCC-CCC-hhhHhHHHHHH---HHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG-HHD-DMLQTAELVHQ---SSTDAAS  288 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G-~~~-d~~~aa~~v~~---~~~~~ae  288 (400)
                      .|+|.|+|||||||+++.|++.+|+       .+|+.|++-.     ..+.... ... ...........   .......
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~-------~~i~~g~~lr-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~   72 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGV-------EHVTTGDALR-----ANKQMDISDMDTEYDTPGEYMDAGELVPDAVVN   72 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------eEEeccHHHH-----HhccCCcccccchHHHHHHHHHcCCCCCHHHHH
Confidence            4788999999999999999999965       7888766532     2220000 000 00000000000   0011334


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHH
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVE  314 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re  314 (400)
                      .++...+.+...+|+||........+
T Consensus        73 ~~l~~~l~~~~~~IldG~pr~~~q~~   98 (215)
T PRK14530         73 EIVEEALSDADGFVLDGYPRNLEQAE   98 (215)
T ss_pred             HHHHHHHhcCCCEEEcCCCCCHHHHH
Confidence            45566666677899999656554443

>PRK04040 adenylate kinase; Provisional

Probab=98.15  E-value=7.6e-06  Score=76.02  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |.+|+++|.|||||||+++.|++.+.     .+..+++.|++.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-----~~~~~~~~g~~~   39 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK-----EDYKIVNFGDVM   39 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc-----cCCeEEecchHH
Confidence            67999999999999999999999982     134677776653

>PLN03025 replication factor C subunit; Provisional

Probab=98.15  E-value=5.5e-06  Score=82.18  Aligned_cols=80  Identities=15%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.|||++|++++++..+...+..+++.                      ...|. +++.|+||+||||+|..+++.+..
T Consensus         4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~----------------------~~~~~-lll~Gp~G~GKTtla~~la~~l~~   60 (319)
T PLN03025          4 VEKYRPTKLDDIVGNEDAVSRLQVIARD----------------------GNMPN-LILSGPPGTGKTTSILALAHELLG   60 (319)
T ss_pred             hhhcCCCCHHHhcCcHHHHHHHHHHHhc----------------------CCCce-EEEECCCCCCHHHHHHHHHHHHhc
Confidence            4789999999999999877766555443                      33465 567999999999999999998732


Q ss_pred             cCCCCCeEEEeCCccccchHHHH
Q 015774          239 SGAATNAVVVEADAFKETDVIYR  261 (400)
Q Consensus       239 ~~~~~~avvIdaDefRe~D~irk  261 (400)
                      +.....++-+++-+.+..+.++.
T Consensus        61 ~~~~~~~~eln~sd~~~~~~vr~   83 (319)
T PLN03025         61 PNYKEAVLELNASDDRGIDVVRN   83 (319)
T ss_pred             ccCccceeeecccccccHHHHHH
Confidence            11112344555544443444443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.14  E-value=3.4e-05  Score=84.26  Aligned_cols=104  Identities=18%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC-ChhhHhHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~-~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ...+++|.|.||+||||+++.|++.++|.  +-++.+++.|..+      +.+...+.. .++......-.+.....+..
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~--~~~~~~~~~~~~r------r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d  285 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWN--GLQSRIFIHQAYR------RRLERRGGAVSSPTGAAEVEFRIAKAIAHD  285 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhc--CCCcEEEccchhH------hhhccCCCCcCCCCCHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999882  3334444444444      455422111 01101111112223333334


Q ss_pred             HHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      +....++.|..+|+|+|+....-+..+++++++
T Consensus       286 ~~~~v~~~GgvaI~DatN~t~~rR~~~~~~~~~  318 (664)
T PTZ00322        286 MTTFICKTDGVAVLDGTNTTHARRMALLRAIRE  318 (664)
T ss_pred             HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            455566679999999999998777777777764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.13  E-value=8.5e-06  Score=75.39  Aligned_cols=34  Identities=29%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -|++.|+|||||||+|+.|++.+++       .+||+|++.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i-------~hlstgd~~   35 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGL-------PHLDTGDIL   35 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC-------cEEcHhHHh
Confidence            3789999999999999999999855       899966544

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.13  E-value=8.8e-06  Score=86.46  Aligned_cols=60  Identities=20%  Similarity=0.249  Sum_probs=53.8

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .....|||++|+++++++.+.+.+..+++.                      .+-|+.+|+.|++|+||||+|+.+++.+
T Consensus         5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~----------------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (509)
T PRK14958          5 VLARKWRPRCFQEVIGQAPVVRALSNALDQ----------------------QYLHHAYLFTGTRGVGKTTISRILAKCL   62 (509)
T ss_pred             hHHHHHCCCCHHHhcCCHHHHHHHHHHHHh----------------------CCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            356889999999999999999988888865                      4578899999999999999999999999


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      .+
T Consensus        63 ~c   64 (509)
T PRK14958         63 NC   64 (509)
T ss_pred             cC
Confidence            76

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.13  E-value=2e-05  Score=76.12  Aligned_cols=77  Identities=18%  Similarity=0.207  Sum_probs=53.8

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..-+.+||++|++.++.+.++..+.-+++..+.                  .....--+++.||||.||||+|..+|+++
T Consensus        13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~------------------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~   74 (233)
T PF05496_consen   13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKK------------------RGEALDHMLFYGPPGLGKTTLARIIANEL   74 (233)
T ss_dssp             -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHC------------------TTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred             hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHh------------------cCCCcceEEEECCCccchhHHHHHHHhcc
Confidence            456789999999999999999988888876322                  02233457899999999999999999999


Q ss_pred             cccCCCCCeEEEeCCccccc
Q 015774          237 FWSGAATNAVVVEADAFKET  256 (400)
Q Consensus       237 g~~~~~~~avvIdaDefRe~  256 (400)
                      +     .+...+++..+...
T Consensus        75 ~-----~~~~~~sg~~i~k~   89 (233)
T PF05496_consen   75 G-----VNFKITSGPAIEKA   89 (233)
T ss_dssp             T-------EEEEECCC--SC
T ss_pred             C-----CCeEeccchhhhhH
Confidence            5     37778887666543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.12  E-value=4.3e-06  Score=84.70  Aligned_cols=60  Identities=20%  Similarity=0.224  Sum_probs=51.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+.|||++|+++++++.+.+.+...+..                      .+-|+.+++.|+||+||||+|+.+++.+
T Consensus         5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~----------------------~~~~h~~L~~Gp~G~GKTtla~~la~~l   62 (363)
T PRK14961          5 ILARKWRPQYFRDIIGQKHIVTAISNGLSL----------------------GRIHHAWLLSGTRGVGKTTIARLLAKSL   62 (363)
T ss_pred             HHHHHhCCCchhhccChHHHHHHHHHHHHc----------------------CCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence            357889999999999999999887766654                      4568899999999999999999999998


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      .+
T Consensus        63 ~c   64 (363)
T PRK14961         63 NC   64 (363)
T ss_pred             cC
Confidence            54

>PRK08118 topology modulation protein; Reviewed

Probab=98.11  E-value=5.1e-06  Score=75.55  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -|+|.|+|||||||+|+.|++.++.       .+++.|.+.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~-------~~~~lD~l~   36 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNI-------PVHHLDALF   36 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------Cceecchhh
Confidence            4899999999999999999999955       677777553

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.10  E-value=1e-05  Score=88.35  Aligned_cols=59  Identities=22%  Similarity=0.303  Sum_probs=53.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +...|||++|+++++.+.+++.+..+++.                      .+.|..+|++|++|+||||+|+.+|+.++
T Consensus         5 LarKyRPktFddVIGQe~vv~~L~~aI~~----------------------grl~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960          5 LARKYRPRNFNELVGQNHVSRALSSALER----------------------GRLHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999998888775                      45688999999999999999999999987


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        63 C   63 (702)
T PRK14960         63 C   63 (702)
T ss_pred             C
Confidence            6

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.09  E-value=3.1e-05  Score=71.08  Aligned_cols=45  Identities=18%  Similarity=0.137  Sum_probs=35.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL  263 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L  263 (400)
                      ..++++.|+|||||||+++.|+..++.       .++++|.+.....+++..
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~   47 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMS   47 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHh
Confidence            458899999999999999999999843       799999987433333433

>PRK13947 shikimate kinase; Provisional

Probab=98.09  E-value=1.6e-05  Score=70.81  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=30.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |+|.|+|||||||+++.||+.+||       .++|.|.+.
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg~-------~~id~d~~~   36 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLSF-------GFIDTDKEI   36 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC-------CEEECchhh
Confidence            899999999999999999999977       689999865

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.08  E-value=1.6e-05  Score=76.31  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|.-|+|.|+|||||||+++.|++.+|+       .+|+.|++-
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~-------~~is~gdll   41 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENL-------KHINMGNIL   41 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC-------cEEECChHH
Confidence            3455999999999999999999999965       899988764

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.06  E-value=9.2e-05  Score=77.11  Aligned_cols=136  Identities=14%  Similarity=0.081  Sum_probs=78.1

Q ss_pred             cchHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHH
Q 015774           79 CPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFI  158 (400)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~  158 (400)
                      -+.+..|..++-.-.+-+.+    .+... .........+.++++              .|+.++++.+..      ..+
T Consensus       129 ~~~~~~l~~el~~lk~~l~~----~~~~~-~~~~~~~~~~~~~~~--------------~L~~~gv~~~~~------~~l  183 (424)
T PRK05703        129 QKELDELRDELKELKNLLED----QLSGL-RQVERIPPEFAELYK--------------RLKRSGLSPEIA------EKL  183 (424)
T ss_pred             hHHHHHHHHHHHHHHHHHHH----HHhhh-cccccchHHHHHHHH--------------HHHHCCCCHHHH------HHH
Confidence            35666666665443333322    22221 111234566678888              899999998877      667


Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ++.+++.- .....  .+...+..++.+   +..     +.. + ++   ...+.+|++.|++|+||||++..||..+-.
T Consensus       184 ~~~~~~~~-~~~~~--~~~~~~~~~L~~---~l~-----~~~-~-~~---~~~~~~i~~vGptGvGKTTt~~kLA~~~~~  247 (424)
T PRK05703        184 LKLLLEHM-PPRER--TAWRYLLELLAN---MIP-----VRV-E-DI---LKQGGVVALVGPTGVGKTTTLAKLAARYAL  247 (424)
T ss_pred             HHHHHHHh-hhhHH--HHHHHHHHHHHH---HhC-----ccc-c-cc---ccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            77665532 11110  233333333333   221     010 0 01   123458899999999999999999987620


Q ss_pred             cCCCCCeEEEeCCcccc
Q 015774          239 SGAATNAVVVEADAFKE  255 (400)
Q Consensus       239 ~~~~~~avvIdaDefRe  255 (400)
                      ...+..+.+|+.|.+|.
T Consensus       248 ~~~g~~V~li~~D~~r~  264 (424)
T PRK05703        248 LYGKKKVALITLDTYRI  264 (424)
T ss_pred             hcCCCeEEEEECCccHH
Confidence            02346789999999984

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.05  E-value=1.5e-05  Score=84.71  Aligned_cols=59  Identities=22%  Similarity=0.280  Sum_probs=51.8

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-..|||+.|+++++++.++..+.+++..                      .+-|+++|+.|+||+||||+|+.+++.+.
T Consensus         4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~----------------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963          4 LYQRARPITFDEVVGQEHVKEVLLAALRQ----------------------GRLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             HHHhhCCCCHHHhcChHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999998888877765                      35688999999999999999999999985


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        62 c   62 (504)
T PRK14963         62 C   62 (504)
T ss_pred             c
Confidence            4

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.04  E-value=9.3e-06  Score=74.96  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefR  254 (400)
                      +|.++|+|||||||+++.||+.+|+       .+++ ++.||
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl-------~~vsaG~iFR   36 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGL-------KLVSAGTIFR   36 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCC-------ceeeccHHHH
Confidence            6889999999999999999999976       5666 55565

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.04  E-value=1.6e-05  Score=89.13  Aligned_cols=59  Identities=17%  Similarity=0.246  Sum_probs=52.6

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-+.|||++|+++++++.+.+.|...+..                      .+-|+.+|++|+||+||||+|+.|++.++
T Consensus         6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~----------------------~rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949          6 LARKWRPATFEQMVGQSHVLHALTNALTQ----------------------QRLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHh----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            46789999999999999999988777665                      45689999999999999999999999997


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (944)
T PRK14949         64 C   64 (944)
T ss_pred             C
Confidence            6

>PRK03839 putative kinase; Provisional

Probab=98.02  E-value=4.3e-06  Score=75.65  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|+|.|+|||||||+++.|++.+++       .+++.|++-
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~-------~~id~d~~~   35 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGY-------EYVDLTEFA   35 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEEehhhhh
Confidence            5899999999999999999999965       789988654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.02  E-value=1.1e-05  Score=88.13  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHH--H-------hhCcCcccccccccccc--CCCCEEEEEEcCCCCcH
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAI--R-------REGESHCTDVMVPAALS--ERSPVLLLMGGGMGAGK  225 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i--~-------~~~~~~~~~v~~pl~~~--~~~P~lILL~G~PGSGK  225 (400)
                      .=++.||++.|.+...|+.+.|.+-.|+.-|-.-  +       .+...-..++|.....+  .+...+.||+|+||.||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            5689999999999999999999999999876432  1       01112223444333333  34456999999999999


Q ss_pred             HHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          226 STVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       226 STlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ||+|.-+|++-|+     .++-|++.+=|
T Consensus       340 TTLAHViAkqaGY-----sVvEINASDeR  363 (877)
T KOG1969|consen  340 TTLAHVIAKQAGY-----SVVEINASDER  363 (877)
T ss_pred             hHHHHHHHHhcCc-----eEEEecccccc
Confidence            9999999999876     66777766555

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.01  E-value=1.8e-05  Score=83.88  Aligned_cols=58  Identities=19%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -..|||+.|+++++++.+.+.+.+.+..                      .+-|+.+|++|++|+||||+|+.+|+.+.+
T Consensus         4 a~KyRP~~f~dliGQe~vv~~L~~a~~~----------------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC   61 (491)
T PRK14964          4 ALKYRPSSFKDLVGQDVLVRILRNAFTL----------------------NKIPQSILLVGASGVGKTTCARIISLCLNC   61 (491)
T ss_pred             hHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence            4689999999999999998888766554                      456889999999999999999999997643

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.00  E-value=2.9e-05  Score=73.46  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=53.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE-Ee
Q 015774          171 TKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-VE  249 (400)
Q Consensus       171 ~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv-Id  249 (400)
                      -.|+.+.+.+..+++.+.....               ....|.++.+.|+|||||||+++.|+..+.  ..+..+.+ |+
T Consensus         7 ~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~   69 (229)
T PRK09270          7 YRDEEIEAVHKPLLRRLAALQA---------------EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVP   69 (229)
T ss_pred             cChHhHHHHHHHHHHHHHHHHh---------------cCCCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEe
Confidence            3577888888888888666431               245789999999999999999999999883  33444455 88


Q ss_pred             CCccccch
Q 015774          250 ADAFKETD  257 (400)
Q Consensus       250 aDefRe~D  257 (400)
                      .|+|...+
T Consensus        70 ~D~~~~~~   77 (229)
T PRK09270         70 MDGFHLDN   77 (229)
T ss_pred             cccccCCH
Confidence            88887543

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.99  E-value=2.2e-05  Score=86.87  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+-+.||+++|+++++++.+++.+..+++.                      .+-++.+|++|++|+||||+++.|++.+
T Consensus         5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~----------------------gRL~HAyLFtGPpGvGKTTlAriLAKaL   62 (830)
T PRK07003          5 VLARKWRPKDFASLVGQEHVVRALTHALDG----------------------GRLHHAYLFTGTRGVGKTTLSRIFAKAL   62 (830)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHhc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999988888765                      4568899999999999999999999998


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      ++
T Consensus        63 nC   64 (830)
T PRK07003         63 NC   64 (830)
T ss_pred             cC
Confidence            76

>PRK00625 shikimate kinase; Provisional

Probab=97.99  E-value=2.5e-05  Score=71.85  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|+|+|.|||||||+++.|++++++       .++|.|.+-
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~-------~~id~D~~I   35 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSL-------PFFDTDDLI   35 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------CEEEhhHHH
Confidence            4899999999999999999999966       799988754

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.99  E-value=7.6e-05  Score=67.86  Aligned_cols=92  Identities=18%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc-cchHHHHHHhcCC-CCChhhHhHHHHHHHH-HHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKG-HHDDMLQTAELVHQSS-TDAAS  288 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR-e~D~irk~L~~~G-~~~d~~~aa~~v~~~~-~~~ae  288 (400)
                      +.+|++.|++||||||+++.|++.++.  .|..++++....=. -...+++.+.... ...++ .+....+... .....
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~--~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~l~~~~r~~~~~   79 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQE--NGYDVLFTREPGGTPIGEKIRELLLNENDEPLTD-KAEALLFAADRHEHLE   79 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCH-HHHHHHHHHHHHHHHH
Confidence            578999999999999999999999842  23344443221100 0112223222211 00111 1111111111 23344


Q ss_pred             HHHHHHHhCCCcEEEECc
Q 015774          289 SLLVTALNEGRDVIMDGT  306 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT  306 (400)
                      ..+..++..|..||+|-.
T Consensus        80 ~~i~~~l~~~~~VI~DR~   97 (195)
T TIGR00041        80 DKIKPALAEGKLVISDRY   97 (195)
T ss_pred             HHHHHHHhCCCEEEECCc
Confidence            567778889999999954

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.97  E-value=2.4e-06  Score=79.22  Aligned_cols=85  Identities=26%  Similarity=0.470  Sum_probs=50.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc-c--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF-W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQT  275 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg-~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~a  275 (400)
                      .|.+|+|+|||||||||+++.|.+++. .              +.+|.++.+++.++|.      ..+... .   +..+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~------~~i~~~-~---f~e~   72 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFK------KGIADG-E---FLEW   72 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHH------HHHHcC-C---eEEE
Confidence            688999999999999999999988762 1              1223445566555543      222221 1   0000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcEEEECc
Q 015774          276 AELVHQSSTDAASSLLVTALNEGRDVIMDGT  306 (400)
Q Consensus       276 a~~v~~~~~~~ae~lie~AL~eG~dVIIDgT  306 (400)
                      + .++...+....+-++..+++|..+|+|..
T Consensus        73 ~-~~~g~~YGt~~~~i~~~~~~g~~~i~d~~  102 (186)
T PRK14737         73 A-EVHDNYYGTPKAFIEDAFKEGRSAIMDID  102 (186)
T ss_pred             E-EECCeeecCcHHHHHHHHHcCCeEEEEcC
Confidence            0 01111222333356678999999999974

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.96  E-value=2.7e-05  Score=72.16  Aligned_cols=35  Identities=31%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      -|+|+|+|||||||+.+.||+.++.       .++|.|..-+
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~~-------~F~D~D~~Ie   38 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALNL-------PFIDTDQEIE   38 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcCC-------CcccchHHHH
Confidence            4789999999999999999999954       7999997663

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.94  E-value=3e-05  Score=83.82  Aligned_cols=58  Identities=17%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -..|||++|+++++++.+++.+...++.                      .+-|+.+|+.|++|+||||+|+.|++.+.+
T Consensus         4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~----------------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   61 (584)
T PRK14952          4 YRKYRPATFAEVVGQEHVTEPLSSALDA----------------------GRINHAYLFSGPRGCGKTSSARILARSLNC   61 (584)
T ss_pred             HHHhCCCcHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3689999999999999999998888765                      467899999999999999999999999876

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.94  E-value=3.3e-05  Score=84.31  Aligned_cols=59  Identities=20%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-..||+++|+++++++.+++.+...++.                      .+-|+.+|++|++|+||||+++.|++.+.
T Consensus         6 LarKYRPqtFddVIGQe~vv~~L~~al~~----------------------gRLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323          6 LARKWRPRDFTTLVGQEHVVRALTHALEQ----------------------QRLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             HHHHhCCCcHHHHcCcHHHHHHHHHHHHh----------------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999988888776                      45688999999999999999999999997


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 C   64 (700)
T PRK12323         64 C   64 (700)
T ss_pred             C
Confidence            6

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.94  E-value=1.9e-05  Score=77.34  Aligned_cols=72  Identities=19%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.|||+.|++++++..+.+.+..+++.                      ...|. +++.|+||+||||+++.+++.+..
T Consensus         6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~----------------------~~~~~-lll~Gp~GtGKT~la~~~~~~l~~   62 (337)
T PRK12402          6 TEKYRPALLEDILGQDEVVERLSRAVDS----------------------PNLPH-LLVQGPPGSGKTAAVRALARELYG   62 (337)
T ss_pred             HHhhCCCcHHHhcCCHHHHHHHHHHHhC----------------------CCCce-EEEECCCCCCHHHHHHHHHHHhcC
Confidence            4689999999999988877776665542                      22344 679999999999999999998742


Q ss_pred             cCCCCCeEEEeCCcc
Q 015774          239 SGAATNAVVVEADAF  253 (400)
Q Consensus       239 ~~~~~~avvIdaDef  253 (400)
                      .....+.+.++..++
T Consensus        63 ~~~~~~~~~i~~~~~   77 (337)
T PRK12402         63 DPWENNFTEFNVADF   77 (337)
T ss_pred             cccccceEEechhhh
Confidence            111234567776554

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.94  E-value=1.6e-05  Score=83.95  Aligned_cols=59  Identities=17%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .-..|||+.|+++++.+.+...+..+++.                      .+-|..+++.|++|+||||+|+.+|+.++
T Consensus         8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~----------------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln   65 (484)
T PRK14956          8 LSRKYRPQFFRDVIHQDLAIGALQNALKS----------------------GKIGHAYIFFGPRGVGKTTIARILAKRLN   65 (484)
T ss_pred             hHHHhCCCCHHHHhChHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46789999999999999998888777765                      44678999999999999999999999986


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        66 c   66 (484)
T PRK14956         66 C   66 (484)
T ss_pred             c
Confidence            5

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.92  E-value=1.5e-05  Score=83.99  Aligned_cols=58  Identities=19%  Similarity=0.279  Sum_probs=48.9

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -+.|||+.|+++++.+.+...+...+..                      .+-|..+++.||||+||||+|+.+++.+++
T Consensus         5 ~~kyRP~~~~divGq~~i~~~L~~~i~~----------------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962          5 YRKYRPKTFSEVVGQDHVKKLIINALKK----------------------NSISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             HHHHCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4689999999999999887766655543                      446788999999999999999999999854

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.92  E-value=1.8e-05  Score=72.37  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .+++|.|+|||||||+++.|+..++
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            5789999999999999999998874

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.92  E-value=3.4e-05  Score=83.89  Aligned_cols=60  Identities=18%  Similarity=0.270  Sum_probs=53.1

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+...|||++|+++++++.+.+.+..+++.                      .+-|+.+|++|++|+||||+|+.|++.+
T Consensus         5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~----------------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L   62 (618)
T PRK14951          5 VLARKYRPRSFSEMVGQEHVVQALTNALTQ----------------------QRLHHAYLFTGTRGVGKTTVSRILAKSL   62 (618)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999888887765                      4578999999999999999999999998


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      .+
T Consensus        63 nC   64 (618)
T PRK14951         63 NC   64 (618)
T ss_pred             cC
Confidence            65

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.91  E-value=4.4e-05  Score=68.24  Aligned_cols=34  Identities=26%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|+|+|+|||||||+++.|++++|+       .++|.|.+.
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~-------~~~d~D~~~   37 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGY-------RFVDTDQWL   37 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC-------CEEEccHHH
Confidence            4788999999999999999999976       789988765

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.90  E-value=3.9e-05  Score=76.84  Aligned_cols=81  Identities=23%  Similarity=0.429  Sum_probs=53.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh------------cCCCC--C--hh--
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS------------SKGHH--D--DM--  272 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~------------~~G~~--~--d~--  272 (400)
                      .|.+|+++||+||||||+|..|++.+       ++.+|++|.+-    +|+.+.            +..|+  +  ++  
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~-------~~~iis~Ds~Q----vy~~l~i~Takp~~~E~~gv~hhlid~~~~~~   71 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRL-------NGEIISADSMQ----VYRGMDIGTAKPTAEERAGVPHHLIDILDPTE   71 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhC-------CCcEEeccccc----eeecccccCCCCCHHHHcCccEEeecccChhh
Confidence            46799999999999999999999998       44789999853    222221            11010  0  11  


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECc
Q 015774          273 LQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT  306 (400)
Q Consensus       273 ~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT  306 (400)
                      .+..    ......+...++.+++.|..+||+|.
T Consensus        72 ~~s~----~~f~~~a~~~i~~i~~~gk~pIlvGG  101 (307)
T PRK00091         72 SYSV----ADFQRDALAAIADILARGKLPILVGG  101 (307)
T ss_pred             cccH----HHHHHHHHHHHHHHHhCCCCEEEECc
Confidence            1111    22244567788889999999888753

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.90  E-value=5.2e-06  Score=77.67  Aligned_cols=27  Identities=30%  Similarity=0.608  Sum_probs=24.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ...|.+|+|+|+|||||||+++.|.+.
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            467899999999999999999999864

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.90  E-value=5.2e-05  Score=75.06  Aligned_cols=59  Identities=20%  Similarity=0.300  Sum_probs=50.8

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..+.+||+.|+++++++.+...+.+++..                      .+.|..+|+.|+||+||||+++.+++.+.
T Consensus         4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~----------------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397         4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN----------------------GRIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             HHHHhCCCcHhhccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35789999999999999998887776654                      34678999999999999999999999975


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        62 ~   62 (355)
T TIGR02397        62 C   62 (355)
T ss_pred             C
Confidence            4

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK08356 hypothetical protein; Provisional

Probab=97.89  E-value=0.00012  Score=67.66  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=26.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +.+|+++|+|||||||+++.|. ++|+       .+|+..+
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~-------~~is~~~   37 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGF-------CRVSCSD   37 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCC-------cEEeCCC
Confidence            4579999999999999999996 4654       4666554

>PRK02496 adk adenylate kinase; Provisional

Probab=97.89  E-value=7.6e-05  Score=67.72  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -|+|.|+|||||||+++.|++.+++       .+++.|++
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~-------~~i~~~~~   35 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHI-------PHISTGDI   35 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEEEhHHH
Confidence            4788999999999999999999855       78887544

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.89  E-value=2.1e-05  Score=83.84  Aligned_cols=59  Identities=20%  Similarity=0.301  Sum_probs=52.8

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +...|||+.|+++++++.+.+.+..+++.                      .+-|+.+|+.|+||+||||+|+.+++.+.
T Consensus         6 l~~k~rP~~f~divGq~~v~~~L~~~i~~----------------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (527)
T PRK14969          6 LARKWRPKSFSELVGQEHVVRALTNALEQ----------------------QRLHHAYLFTGTRGVGKTTLARILAKSLN   63 (527)
T ss_pred             HHHHhCCCcHHHhcCcHHHHHHHHHHHHc----------------------CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56789999999999999999988888775                      45688999999999999999999999986


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (527)
T PRK14969         64 C   64 (527)
T ss_pred             C
Confidence            5

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.88  E-value=0.00013  Score=66.47  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +..|++.|+|||||||+++.|+..+++       .+++.|...
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~-------~~vd~D~~i   39 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-------EFYDSDQEI   39 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCC-------cEEECCchH
Confidence            456999999999999999999999855       789999754

>PRK06547 hypothetical protein; Provisional

Probab=97.87  E-value=1.4e-05  Score=73.30  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=34.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ...|.+|++.|+|||||||+++.|++.++       +.+++.|+|.
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~-------~~~~~~d~~~   50 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTG-------FQLVHLDDLY   50 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhC-------CCeeccccee
Confidence            46788999999999999999999999984       4788888876

>PRK14526 adenylate kinase; Provisional

Probab=97.87  E-value=8.5e-05  Score=70.39  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=27.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      |+|.|+|||||||+++.|++.+++       .+++++++
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~-------~~is~G~l   34 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNY-------YHISTGDL   34 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-------ceeecChH
Confidence            678999999999999999999865       77876554

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.87  E-value=0.00017  Score=63.57  Aligned_cols=29  Identities=28%  Similarity=0.275  Sum_probs=25.4

Q ss_pred             EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       217 L~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      |.|+|||||||+++.|++++|+       ++|+..+
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~-------~~is~~~   29 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGL-------VHISVGD   29 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTS-------EEEEHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCc-------ceechHH
Confidence            5799999999999999999965       8998544

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.86  E-value=5.3e-05  Score=81.42  Aligned_cols=59  Identities=20%  Similarity=0.300  Sum_probs=52.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-..|||++|+++++.+.+++.+..++..                      .+.|+.+|++|++|+||||+|+.+++.+.
T Consensus         6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~----------------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~   63 (559)
T PRK05563          6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQ----------------------GKISHAYLFSGPRGTGKTSAAKIFAKAVN   63 (559)
T ss_pred             HHHHhCCCcHHhccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34789999999999999999988888775                      35688999999999999999999999986


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (559)
T PRK05563         64 C   64 (559)
T ss_pred             C
Confidence            5

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.85  E-value=5.8e-05  Score=81.32  Aligned_cols=59  Identities=20%  Similarity=0.325  Sum_probs=52.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-..|||++|+++++.+.+++.+...++.                      .+-|+.+|+.|++|+||||+|+.|++.+.
T Consensus         6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~----------------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~   63 (576)
T PRK14965          6 LARKYRPQTFSDLTGQEHVSRTLQNAIDT----------------------GRVAHAFLFTGARGVGKTSTARILAKALN   63 (576)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            45789999999999999999888877765                      45688999999999999999999999986


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (576)
T PRK14965         64 C   64 (576)
T ss_pred             C
Confidence            5

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.85  E-value=2.8e-05  Score=83.46  Aligned_cols=59  Identities=20%  Similarity=0.218  Sum_probs=51.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +.+.|||+.|+++++++.+...+...++.                      .+.|..+|+.|++|+||||+|+.+++.+.
T Consensus         6 La~KyRP~~f~diiGq~~~v~~L~~~i~~----------------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~   63 (546)
T PRK14957          6 LARKYRPQSFAEVAGQQHALNSLVHALET----------------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLN   63 (546)
T ss_pred             HHHHHCcCcHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56789999999999999998887776654                      45678899999999999999999999886


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (546)
T PRK14957         64 C   64 (546)
T ss_pred             C
Confidence            4

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.84  E-value=0.00016  Score=64.75  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI  248 (400)
                      +|.+.|++||||||+++.|++.+  ...+..++.+
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l--~~~g~~v~~~   34 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERL--EARGYEVVLT   34 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEE
Confidence            78999999999999999999998  2333455444

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.84  E-value=5.5e-05  Score=82.61  Aligned_cols=59  Identities=20%  Similarity=0.248  Sum_probs=52.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-..|||++|+++++.+.+...+...++.                      .+-|+.+|+.|++|+||||+|+.+++.++
T Consensus         6 La~KyRP~~f~divGQe~vv~~L~~~l~~----------------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~   63 (647)
T PRK07994          6 LARKWRPQTFAEVVGQEHVLTALANALDL----------------------GRLHHAYLFSGTRGVGKTTIARLLAKGLN   63 (647)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            56789999999999999999887776665                      45688999999999999999999999997


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (647)
T PRK07994         64 C   64 (647)
T ss_pred             h
Confidence            6

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.84  E-value=0.00016  Score=65.80  Aligned_cols=89  Identities=20%  Similarity=0.196  Sum_probs=47.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC--CccccchHHHHHHhc-CCCCChhhHhHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA--DAFKETDVIYRALSS-KGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda--DefRe~D~irk~L~~-~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      +.+|.+.|++||||||+++.|++.+.  ..+.++++...  +.. ....+++.+.. ....... ..+......-+....
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~--~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~   78 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLE--QQGRDVVFTREPGGTP-LGEKLRELLLDPNEEMDDK-TELLLFYAARAQHLE   78 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH--HcCCceeEeeCCCCCh-HHHHHHHHHhccccCCCHH-HHHHHHHHHHHHHHH
Confidence            57999999999999999999999873  23334333321  110 01122233321 0111111 111111111133334


Q ss_pred             HHHHHHHhCCCcEEEE
Q 015774          289 SLLVTALNEGRDVIMD  304 (400)
Q Consensus       289 ~lie~AL~eG~dVIID  304 (400)
                      ..+..++..|..||+|
T Consensus        79 ~~i~~~l~~g~~vi~D   94 (205)
T PRK00698         79 EVIKPALARGKWVISD   94 (205)
T ss_pred             HHHHHHHHCCCEEEEC
Confidence            4566788899999999

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.83  E-value=2.8e-05  Score=72.12  Aligned_cols=41  Identities=29%  Similarity=0.562  Sum_probs=36.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..|.+|.|+|+|||||||+++.|+..++    +.++.+++.|.|.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----~~~~~~i~~D~~~   44 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVIPQDSYY   44 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC----CCceEEEeCCccc
Confidence            4789999999999999999999999983    3467889999885

>PRK07667 uridine kinase; Provisional

Probab=97.83  E-value=2.5e-05  Score=72.23  Aligned_cols=43  Identities=14%  Similarity=0.234  Sum_probs=36.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..+.+|.|+|+|||||||++..|++.+  ...+.++.+++.|+|-
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l--~~~~~~~~~i~~Dd~~   57 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENM--KQEGIPFHIFHIDDYI   57 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEEcCccc
Confidence            456899999999999999999999988  3445678899999975

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.82  E-value=6.9e-05  Score=81.57  Aligned_cols=60  Identities=18%  Similarity=0.242  Sum_probs=52.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+-..|||+.|+++++++.++..|...+..                      .+-|+.+|+.|++|+||||+|..+|+.+
T Consensus         5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~----------------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L   62 (620)
T PRK14954          5 VIARKYRPSKFADITAQEHITHTIQNSLRM----------------------DRVGHGYIFSGLRGVGKTTAARVFAKAV   62 (620)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999888776654                      4678899999999999999999999999


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      .+
T Consensus        63 ~c   64 (620)
T PRK14954         63 NC   64 (620)
T ss_pred             CC
Confidence            76

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.82  E-value=6.8e-05  Score=74.63  Aligned_cols=72  Identities=21%  Similarity=0.224  Sum_probs=55.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -..+||.+|++.++....+..+..++...+.                  ....|..+++.|+||+||||+|+.+++.+++
T Consensus        16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~------------------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKK------------------RGEALDHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHh------------------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence            4678999999999999999998888876322                  0234456789999999999999999999965


Q ss_pred             cCCCCCeEEEeCCcc
Q 015774          239 SGAATNAVVVEADAF  253 (400)
Q Consensus       239 ~~~~~~avvIdaDef  253 (400)
                           +...+++..+
T Consensus        78 -----~~~~~~~~~~   87 (328)
T PRK00080         78 -----NIRITSGPAL   87 (328)
T ss_pred             -----CeEEEecccc
Confidence                 4555554433

>PRK08233 hypothetical protein; Provisional

Probab=97.80  E-value=2.4e-05  Score=69.84  Aligned_cols=27  Identities=15%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .+.+|.++|+|||||||++..|++.++
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            468999999999999999999999984

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=97.80  E-value=9.7e-05  Score=77.44  Aligned_cols=61  Identities=20%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+-+.|||++|+++++++.+...+..++..                      .+-|..+|+.|+||+||||+|+.+++.
T Consensus         5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~----------------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~   62 (451)
T PRK06305          5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRF----------------------NRAAHAYLFSGIRGTGKTTLARIFAKA   62 (451)
T ss_pred             HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3567889999999999999988777666654                      356889999999999999999999998


Q ss_pred             ccc
Q 015774          236 SFW  238 (400)
Q Consensus       236 lg~  238 (400)
                      +.+
T Consensus        63 l~c   65 (451)
T PRK06305         63 LNC   65 (451)
T ss_pred             hcC
Confidence            854

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.80  E-value=3.6e-05  Score=84.44  Aligned_cols=60  Identities=18%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+...|||++|+++++.+.+++.+..+++.                      .+-|+.+|++|++|+||||+|+.|++.+
T Consensus         5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~----------------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~L   62 (709)
T PRK08691          5 VLARKWRPKTFADLVGQEHVVKALQNALDE----------------------GRLHHAYLLTGTRGVGKTTIARILAKSL   62 (709)
T ss_pred             hHHHHhCCCCHHHHcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            356789999999999999999988888775                      4568899999999999999999999998


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      .+
T Consensus        63 nC   64 (709)
T PRK08691         63 NC   64 (709)
T ss_pred             cc
Confidence            65

>PRK06761 hypothetical protein; Provisional

Probab=97.79  E-value=0.00017  Score=71.56  Aligned_cols=98  Identities=18%  Similarity=0.128  Sum_probs=61.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeE-EEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV-VVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~av-vIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l  290 (400)
                      +.+|+|+|+|||||||+++.|++.+..  .+-++. ..++|.+...+     +.+....... .-...+ ......+..+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~--~g~~v~~~~~~~~~~p~d-----~~~~~~~~~e-er~~~l-~~~~~f~~~l   73 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQ--NGIEVELYLEGNLDHPAD-----YDGVACFTKE-EFDRLL-SNYPDFKEVL   73 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCc--CceEEEEEecCCCCCchh-----hccccCCCHH-HHHHHH-HhhhHHHHHH
Confidence            358999999999999999999999842  233333 34555554322     2221111111 111111 2223344567


Q ss_pred             HHHHHhCCCcEEEECcCCChHHHHHHHH
Q 015774          291 LVTALNEGRDVIMDGTLSWVPFVEQTIA  318 (400)
Q Consensus       291 ie~AL~eG~dVIIDgT~~~~~~re~~i~  318 (400)
                      .+.++..|.+||+-..-....+++.+.+
T Consensus        74 ~~~~~~~g~~~i~~~~~l~~~yr~~~~~  101 (282)
T PRK06761         74 LKNVLKKGDYYLLPYRKIKNEFGDQFSD  101 (282)
T ss_pred             HHHHHHcCCeEEEEehhhhHHHhhhhhh
Confidence            8889999999999999888887776653

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.79  E-value=9.6e-05  Score=79.72  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=51.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..+.|||+.|+++++++.++..+..++..                      .+.+..+|+.|++|+||||+++.+++.+.
T Consensus         6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~----------------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950          6 LYRKWRSQTFAELVGQEHVVQTLRNAIAE----------------------GRVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHh----------------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35889999999999999999888777765                      34678999999999999999999999885


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (585)
T PRK14950         64 C   64 (585)
T ss_pred             C
Confidence            4

>PRK13973 thymidylate kinase; Provisional

Probab=97.78  E-value=0.00022  Score=67.04  Aligned_cols=93  Identities=23%  Similarity=0.312  Sum_probs=54.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCccccchHHHHHHhcCC-CCChhhHhHHHHHHHH-HHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKG-HHDDMLQTAELVHQSS-TDAAS  288 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDefRe~D~irk~L~~~G-~~~d~~~aa~~v~~~~-~~~ae  288 (400)
                      +.+|.+-|++||||||.++.|++.+  ...+..++.. .++.-.....+++.+.... ..-++ .+....+... .....
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l--~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~-~~~~ll~~a~r~~~~~   79 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERL--RAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGP-RMEALLFAAARDDHVE   79 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCH-HHHHHHHHHHHHHHHH
Confidence            5789999999999999999999998  3333444444 2222111234444444321 10011 1112222221 23345


Q ss_pred             HHHHHHHhCCCcEEEECcC
Q 015774          289 SLLVTALNEGRDVIMDGTL  307 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~  307 (400)
                      ..+..++++|..||.|.-.
T Consensus        80 ~~i~~~l~~g~~Vi~DRy~   98 (213)
T PRK13973         80 EVIRPALARGKIVLCDRFI   98 (213)
T ss_pred             HHHHHHHHCCCEEEEcchh
Confidence            5678899999999998644

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.78  E-value=3.4e-05  Score=82.07  Aligned_cols=58  Identities=22%  Similarity=0.222  Sum_probs=50.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -..|||++|.++++.+.+.+.+...++.                      .+.|..+|++|+||+||||+|+.+++.+.+
T Consensus        12 a~kyRP~~f~dliGq~~vv~~L~~ai~~----------------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc   69 (507)
T PRK06645         12 ARKYRPSNFAELQGQEVLVKVLSYTILN----------------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNC   69 (507)
T ss_pred             hhhhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4679999999999999998877776654                      456789999999999999999999999865

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.77  E-value=1.1e-05  Score=74.12  Aligned_cols=27  Identities=37%  Similarity=0.714  Sum_probs=24.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +++.+|+|.|+|||||||+++.|+..+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            466799999999999999999999986

>PRK13949 shikimate kinase; Provisional

Probab=97.76  E-value=0.00016  Score=65.97  Aligned_cols=34  Identities=32%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -|+|.|+|||||||+++.|++.+++       .+++.|.+-
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~-------~~id~D~~i   36 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGL-------SFIDLDFFI   36 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC-------CeecccHHH
Confidence            3899999999999999999999966       799988754

>PRK05439 pantothenate kinase; Provisional

Probab=97.76  E-value=5e-05  Score=76.26  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=38.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ...|.+|.|+|+|||||||+++.|+..++-...+..+.+|+.|.|--
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            56899999999999999999999999773111245788999999973

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.76  E-value=9e-05  Score=71.94  Aligned_cols=55  Identities=22%  Similarity=0.396  Sum_probs=45.1

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.|||++|+++.+...+...+..+++.                      ...|. +++.|+||+||||+++.+++.+
T Consensus         8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~----------------------~~~~~-~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440          8 VEKYRPRTLDEIVGQEEIVERLKSYVKE----------------------KNMPH-LLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             chhhCCCcHHHhcCcHHHHHHHHHHHhC----------------------CCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999988887777766643                      22344 5999999999999999999987

>PRK14528 adenylate kinase; Provisional

Probab=97.75  E-value=8.6e-05  Score=68.40  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .|++.|+|||||||+++.|++.+|+       .+++.|++
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~-------~~is~~~~   35 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSI-------PQISTGDI   35 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------CeeeCCHH
Confidence            4788999999999999999999955       68887765

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.74  E-value=0.00011  Score=79.12  Aligned_cols=59  Identities=12%  Similarity=0.191  Sum_probs=52.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-..|||++|+++++++.++..+..++..                      .+-|..+|++|++|.||||+|+.|++.+.
T Consensus         6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~----------------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~   63 (563)
T PRK06647          6 TATKRRPRDFNSLEGQDFVVETLKHSIES----------------------NKIANAYIFSGPRGVGKTSSARAFARCLN   63 (563)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            45789999999999999999888777765                      45678999999999999999999999986


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (563)
T PRK06647         64 C   64 (563)
T ss_pred             c
Confidence            5

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.74  E-value=2.2e-05  Score=70.48  Aligned_cols=24  Identities=38%  Similarity=0.771  Sum_probs=22.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+|+|.|+|||||||+++.|+..+
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            589999999999999999999976

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.74  E-value=0.00011  Score=79.98  Aligned_cols=59  Identities=27%  Similarity=0.362  Sum_probs=51.8

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +.+.|||+.|+++++++.++..|...+++                      .+-+..+|+.|++|+||||+|+.|++.+.
T Consensus         6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~----------------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959          6 LTARYRPQTFAEVAGQETVKAILSRAAQE----------------------NRVAPAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence            46789999999999999998888877765                      34467899999999999999999999997


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 C   64 (624)
T PRK14959         64 C   64 (624)
T ss_pred             c
Confidence            6

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=97.74  E-value=0.00015  Score=68.15  Aligned_cols=91  Identities=22%  Similarity=0.342  Sum_probs=59.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-----
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-----  283 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-----  283 (400)
                      ...|.+||+-|+|||||-|....+++.+||       .||++.++     +|..+...|.     ..+..+...+     
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~f-------tHlSaGdL-----LR~E~~~~gs-----e~g~~I~~~i~~G~i   67 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGF-------THLSAGDL-----LRAEIASAGS-----ERGALIKEIIKNGDL   67 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCc-------eeecHHHH-----HHHHHccccC-----hHHHHHHHHHHcCCc
Confidence            356779999999999999999999999977       89986543     3444444211     0011111100     


Q ss_pred             --HHHHHHHHHHHHhCCCc---EEEECcCCChHHHHHH
Q 015774          284 --TDAASSLLVTALNEGRD---VIMDGTLSWVPFVEQT  316 (400)
Q Consensus       284 --~~~ae~lie~AL~eG~d---VIIDgT~~~~~~re~~  316 (400)
                        ....-++++.++.+-.+   ++|||--...+....+
T Consensus        68 VP~ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~f  105 (195)
T KOG3079|consen   68 VPVEITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEF  105 (195)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHH
Confidence              23444566667765544   9999998887766555

>PLN02459 probable adenylate kinase

Probab=97.73  E-value=0.00015  Score=71.38  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=29.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .|..|++.|+|||||||+++.|++.+++       .+|++.++
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~-------~~is~gdl   63 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGV-------PHIATGDL   63 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCC-------cEEeCcHH
Confidence            4456777899999999999999999965       88886543

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.71  E-value=2.8e-05  Score=71.35  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +|.|+|+|||||||+++.|+..+.  ..+.++.+|+.|+|..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~--~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR--VNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEehhhccc
Confidence            588999999999999999999983  3455789999999984

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK15453 phosphoribulokinase; Provisional

Probab=97.71  E-value=4.4e-05  Score=75.93  Aligned_cols=45  Identities=31%  Similarity=0.381  Sum_probs=37.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~  256 (400)
                      +++.+|.++|.|||||||+++.|++.++  ..+.++.+|+.|.|...
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh~y   47 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFHRY   47 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEEeccccccc
Confidence            4566899999999999999999998873  23446899999999853

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.71  E-value=7.3e-05  Score=67.31  Aligned_cols=26  Identities=31%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+++|+|+|||||||+++.|+..++.
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999998753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.71  E-value=6.5e-05  Score=75.60  Aligned_cols=60  Identities=20%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+-+.|||++|+++++++.+.+.+..+++.                      .+.|..+++.|+||+||||++..+++.+
T Consensus         6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~----------------------~~~~~~~L~~G~~G~GKt~~a~~la~~l   63 (367)
T PRK14970          6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN----------------------NHLAQALLFCGPRGVGKTTCARILARKI   63 (367)
T ss_pred             HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999988877777765                      3457899999999999999999999987


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      ..
T Consensus        64 ~~   65 (367)
T PRK14970         64 NQ   65 (367)
T ss_pred             cC
Confidence            53

>PRK14529 adenylate kinase; Provisional

Probab=97.70  E-value=0.00018  Score=69.01  Aligned_cols=90  Identities=19%  Similarity=0.232  Sum_probs=52.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccc----hHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKET----DVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~----D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      |+|.|+|||||||+++.|++.+++       .+++ +|.||+.    .++-+.+..      ....+..+.+   ..+..
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~-------~~is~gdllr~~i~~~t~lg~~i~~------~i~~G~lvpd---ei~~~   66 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDL-------AHIESGAIFREHIGGGTELGKKAKE------YIDRGDLVPD---DITIP   66 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC-------CCcccchhhhhhccCCChHHHHHHH------HHhccCcchH---HHHHH
Confidence            788999999999999999999965       6675 4555531    000000000      0111111111   12222


Q ss_pred             HHHHHHhC--CCcEEEECcCCChHHHHHHHHHH
Q 015774          290 LLVTALNE--GRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       290 lie~AL~e--G~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      ++...+.+  ...+||||.-.+....+.+.++.
T Consensus        67 lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l   99 (223)
T PRK14529         67 MILETLKQDGKNGWLLDGFPRNKVQAEKLWEAL   99 (223)
T ss_pred             HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHH
Confidence            33344432  46799999999888777665543

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.70  E-value=0.00013  Score=81.85  Aligned_cols=59  Identities=19%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-..||+++|++|++++.++..|...++.                      .+-++.+|+.|++|+||||+|+.|++.+.
T Consensus         5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~----------------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764          5 LYRRYRPATFAEVIGQEHVTEPLSTALDS----------------------GRINHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHh----------------------CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999988888765                      45678999999999999999999999997


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        63 C   63 (824)
T PRK07764         63 C   63 (824)
T ss_pred             c
Confidence            6

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.70  E-value=5.8e-05  Score=81.76  Aligned_cols=60  Identities=15%  Similarity=0.254  Sum_probs=51.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+.|||+.|+.+++++.+.+.+...+..                      .+.|+.+|+.|++|+||||+|+.+|+.+
T Consensus         5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~----------------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L   62 (605)
T PRK05896          5 TFYRKYRPHNFKQIIGQELIKKILVNAILN----------------------NKLTHAYIFSGPRGIGKTSIAKIFAKAI   62 (605)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            456889999999999999998888776654                      4567899999999999999999999998


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      .+
T Consensus        63 ~C   64 (605)
T PRK05896         63 NC   64 (605)
T ss_pred             cC
Confidence            54

>PLN02165 adenylate isopentenyltransferase

Probab=97.67  E-value=0.0001  Score=74.74  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=32.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.+.+|+|.|++||||||++..|+..+++       .+|++|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~-------eIIsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPS-------EIINSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCC-------ceecCChh
Confidence            34558999999999999999999999854       78999987

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.67  E-value=6.1e-05  Score=61.36  Aligned_cols=42  Identities=19%  Similarity=0.326  Sum_probs=33.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +..+++.|+||+||||++..++..++.  ...+++.++++....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~   43 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILE   43 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccc
Confidence            457899999999999999999999853  112578888887664

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00152 dephospho-CoA kinase

Probab=97.66  E-value=0.00011  Score=67.37  Aligned_cols=34  Identities=32%  Similarity=0.600  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.|+|.+||||||+++.|++..++       .++|+|++-
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~-------~~i~~D~~~   34 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHF-------PVIDADKIA   34 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCC-------eEEeCCHHH
Confidence            4789999999999999999988644       899999884

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=97.64  E-value=8.5e-05  Score=80.53  Aligned_cols=59  Identities=20%  Similarity=0.325  Sum_probs=53.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +-..|||+.|+++++++.+++.+...++.                      .+.|+.+|+.|++|+||||+|+.|++.+.
T Consensus        14 la~KyRP~~f~dliGq~~~v~~L~~~~~~----------------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~   71 (598)
T PRK09111         14 LARKYRPQTFDDLIGQEAMVRTLTNAFET----------------------GRIAQAFMLTGVRGVGKTTTARILARALN   71 (598)
T ss_pred             HHhhhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence            56789999999999999999998887765                      45788999999999999999999999986


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        72 c   72 (598)
T PRK09111         72 Y   72 (598)
T ss_pred             c
Confidence            5

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.63  E-value=0.0002  Score=76.82  Aligned_cols=59  Identities=15%  Similarity=0.283  Sum_probs=51.6

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..+.|||++|+++++++.++..+...+..                      .+-|.++|+.|++|+||||+|+.+++.+.
T Consensus         4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~----------------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~   61 (535)
T PRK08451          4 LALKYRPKHFDELIGQESVSKTLSLALDN----------------------NRLAHAYLFSGLRGSGKTSSARIFARALV   61 (535)
T ss_pred             HHHHHCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            45789999999999999998888777754                      45789999999999999999999999985


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        62 c   62 (535)
T PRK08451         62 C   62 (535)
T ss_pred             C
Confidence            3

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.63  E-value=3.9e-05  Score=70.00  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.|+|+|||||||+++.|++ +|+       .+|++|++-
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~-------~~i~~D~~~   33 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGI-------PVIDADKIA   33 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCC-------CEEecCHHH
Confidence            488999999999999999998 754       899998875

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.62  E-value=4.8e-05  Score=70.90  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.|+|++||||||+++.|++.+|+       .++|+|.+.
T Consensus         3 ~i~itG~~gsGKst~~~~l~~~~g~-------~~i~~D~~~   36 (195)
T PRK14730          3 RIGLTGGIASGKSTVGNYLAQQKGI-------PILDADIYA   36 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCC-------eEeeCcHHH
Confidence            6899999999999999999998855       899998875

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.61  E-value=9.6e-05  Score=81.55  Aligned_cols=59  Identities=15%  Similarity=0.294  Sum_probs=52.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ....|||++|+++++.+.+.+.+..+++.                      .+-|+.+|+.|++|+||||+|+.+|+.+.
T Consensus         8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~----------------------~rl~HAYLF~GP~GtGKTt~AriLAk~Ln   65 (725)
T PRK07133          8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKS----------------------NKISHAYLFSGPRGTGKTSVAKIFANALN   65 (725)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            46789999999999999999888887765                      45688999999999999999999999986


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        66 C   66 (725)
T PRK07133         66 C   66 (725)
T ss_pred             c
Confidence            5

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.60  E-value=6.2e-05  Score=63.00  Aligned_cols=34  Identities=18%  Similarity=0.382  Sum_probs=28.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      |++.|+||+||||+++.+++.++.     ..+.+++.++
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~   34 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSEL   34 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc-----cccccccccc
Confidence            689999999999999999999853     5566775544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.60  E-value=5.5e-05  Score=70.70  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +|.|+|+|||||||+++.|++.+      .++.+|+.|+|.-
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~------~~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL------PNCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc------CCCeEEccccccC
Confidence            57899999999999999999998      2568999999873

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.59  E-value=4.7e-05  Score=63.49  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|+|+|||||||+++.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999996

...

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.00073  Score=69.61  Aligned_cols=46  Identities=13%  Similarity=0.261  Sum_probs=36.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKET  256 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefRe~  256 (400)
                      ..+.++++.|++|+||||++..|+..+-. ..+ ..+.+|..|.+|..
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~g  181 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIG  181 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEeccccccc
Confidence            45679999999999999999999987521 122 46788999999853

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.58  E-value=0.00065  Score=67.66  Aligned_cols=37  Identities=24%  Similarity=0.084  Sum_probs=31.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .++..|+|+|+|||||||+++.|++.+|+       .+++.|..
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~-------~~id~D~~  167 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAARLGV-------PFVELNRE  167 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEeHHHH
Confidence            46678999999999999999999999977       57776643

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.58  E-value=0.00011  Score=78.60  Aligned_cols=62  Identities=23%  Similarity=0.309  Sum_probs=49.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.|+|++.++++-+.+--..+.+|++++..                  ......+++|+|||||||||+++.|++++|+
T Consensus        10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~------------------~~~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS------------------GSSPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             chhcCCCCHHHhhccHHHHHHHHHHHHHHhc------------------cCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999998777777777788876211                  0223459999999999999999999999976

>smart00072 GuKc Guanylate kinase homologues

Probab=97.57  E-value=5.6e-05  Score=69.16  Aligned_cols=25  Identities=28%  Similarity=0.565  Sum_probs=23.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+|++.|||||||+|++..|.+.+
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            4689999999999999999999885

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.57  E-value=0.00017  Score=73.11  Aligned_cols=51  Identities=16%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       200 ~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .++..+.+....|.+|-++|+|||||||++..|...+  ...+.++.+|+.|.
T Consensus        44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l--~~~g~~v~vi~~Dp   94 (332)
T PRK09435         44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL--IEQGHKVAVLAVDP   94 (332)
T ss_pred             HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeCC
Confidence            3444444335678999999999999999999998887  44466788888776

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.57  E-value=0.00011  Score=77.67  Aligned_cols=59  Identities=20%  Similarity=0.271  Sum_probs=51.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .-..|||+.|.++++++.+...+..++..                      .+-|.++|++|++|+||||+|+.+++.+.
T Consensus         6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~----------------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953          6 FARKYRPKFFKEVIGQEIVVRILKNAVKL----------------------QRVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             HHHhhCCCcHHHccChHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35679999999999999999888877765                      34678899999999999999999999986


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 c   64 (486)
T PRK14953         64 C   64 (486)
T ss_pred             C
Confidence            4

>PLN02924 thymidylate kinase

Probab=97.57  E-value=0.00078  Score=64.27  Aligned_cols=95  Identities=22%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CC--ccccchHHHHHHhcCCCCChhhHhHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-AD--AFKETDVIYRALSSKGHHDDMLQTAELVHQSSTD  285 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aD--efRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~  285 (400)
                      .+.+.+|.+.|..||||||.++.|++.+..  .+..++.+. ++  +.. -..+++.+......++  .+....+...-.
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~--~g~~v~~~~ep~~~~~~-g~~ir~~l~~~~~~~~--~~~~llf~adR~   87 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKG--LGVAAELWRFPDRTTSV-GQMISAYLSNKSQLDD--RAIHLLFSANRW   87 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCceeeeCCCCCChH-HHHHHHHHhCCCCCCH--HHHHHHHHHHHH
Confidence            456789999999999999999999999943  344443332 11  110 1123444433211111  111111111111


Q ss_pred             HHHHHHHHHHhCCCcEEEECcCC
Q 015774          286 AASSLLVTALNEGRDVIMDGTLS  308 (400)
Q Consensus       286 ~ae~lie~AL~eG~dVIIDgT~~  308 (400)
                      .....+..+++.|..||+|--..
T Consensus        88 ~~~~~I~pal~~g~vVI~DRy~~  110 (220)
T PLN02924         88 EKRSLMERKLKSGTTLVVDRYSY  110 (220)
T ss_pred             HHHHHHHHHHHCCCEEEEccchh
Confidence            11245888999999999996543

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.56  E-value=0.00011  Score=67.79  Aligned_cols=39  Identities=21%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCC----eEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATN----AVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~----avvIdaDefR  254 (400)
                      ||-|+|+|||||||+|+.|+..++  ..+..    ..+++.|.|.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGB
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccc
Confidence            688999999999999999999994  22333    5678888875

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.55  E-value=0.00018  Score=66.74  Aligned_cols=34  Identities=35%  Similarity=0.510  Sum_probs=28.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|-|+|..||||||+++.|++ +|       +.++|+|.+-
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G-------~~vidaD~i~   34 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LG-------FPVIDADEIA   34 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT--------EEEEHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CC-------CCEECccHHH
Confidence            3688999999999999999998 64       4899988654

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.54  E-value=9.1e-05  Score=67.99  Aligned_cols=37  Identities=27%  Similarity=0.584  Sum_probs=32.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.|+|+|||||||+++.|+..++    +.++.+++.|+|.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC----CCCeEEEEecccc
Confidence            578999999999999999999872    3467899999886

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.53  E-value=0.0014  Score=68.48  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ..+.+|.+.|++|+||||++..|+..+-.......+-++..|.+|.
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri  234 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI  234 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence            4577999999999999999999998641111123556788999984

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=97.53  E-value=8.9e-05  Score=68.74  Aligned_cols=35  Identities=34%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+|.|+|++||||||+++.|++ +|+       .++|+|.+-
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~-------~~i~~D~~~   36 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGA-------PVIDADAIA   36 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCC-------EEEEecHHH
Confidence            45899999999999999999998 754       899999875

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.52  E-value=0.00015  Score=74.76  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHH---HHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          159 MAATRKQRFEKVTKDLKMKRV---FSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~---~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.+||+.|+++++...+...   +..+++.                      . .+.-+++.|+||+||||+|+.+++.
T Consensus         3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~----------------------~-~~~~ilL~GppGtGKTtLA~~ia~~   59 (413)
T PRK13342          3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA----------------------G-RLSSMILWGPPGTGKTTLARIIAGA   59 (413)
T ss_pred             hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc----------------------C-CCceEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999998876444   5444432                      1 2235677999999999999999998


Q ss_pred             ccccCCCCCeEEEeCC
Q 015774          236 SFWSGAATNAVVVEAD  251 (400)
Q Consensus       236 lg~~~~~~~avvIdaD  251 (400)
                      ++.     ..+.+++-
T Consensus        60 ~~~-----~~~~l~a~   70 (413)
T PRK13342         60 TDA-----PFEALSAV   70 (413)
T ss_pred             hCC-----CEEEEecc
Confidence            743     55666643

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.51  E-value=0.00039  Score=75.63  Aligned_cols=123  Identities=18%  Similarity=0.296  Sum_probs=72.9

Q ss_pred             HHHHHHhhccccchhhHH-HhhhcCCCcch-hHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHH
Q 015774           84 KLAYEYLKKSKGCEDNIY-EYFSKEAEPES-LYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAA  161 (400)
Q Consensus        84 ~l~~~~~~~~~~~~~~i~-~~~~~~~~~~~-l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      ++...+-++-+.+.+.|. ..+++++.+|. ...+-++.||+                    +     .++.+.+-+++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------~-----~~~~~~~~~~~~  147 (615)
T TIGR02903        93 KVETRMQERQNKYLEEIRLQVLKEEKGPENSSTLKKLERLEK--------------------L-----EKKKLHKSAQSL  147 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH--------------------H-----HHHHhhhHHhhh
Confidence            444444455555555554 55555555554 33333444444                    1     234466778899


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc--
Q 015774          162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS--  239 (400)
Q Consensus       162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~--  239 (400)
                      +|++.|+.+.+.......+   +..   ++                 ...|..+++.|+||+||||+|+.+.....-.  
T Consensus       148 ~rp~~~~~iiGqs~~~~~l---~~~---ia-----------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~  204 (615)
T TIGR02903       148 LRPRAFSEIVGQERAIKAL---LAK---VA-----------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKH  204 (615)
T ss_pred             cCcCcHHhceeCcHHHHHH---HHH---Hh-----------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccC
Confidence            9999999998866554432   222   11                 1234468889999999999999987654100  


Q ss_pred             ---CCCCCeEEEeCCccc
Q 015774          240 ---GAATNAVVVEADAFK  254 (400)
Q Consensus       240 ---~~~~~avvIdaDefR  254 (400)
                         ....+.+.+++..+.
T Consensus       205 ~~~~~~~~fv~i~~~~l~  222 (615)
T TIGR02903       205 TPFAEDAPFVEVDGTTLR  222 (615)
T ss_pred             CcccCCCCeEEEechhcc
Confidence               012345778766553

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR00235 udk uridine kinase

Probab=97.51  E-value=0.00013  Score=67.96  Aligned_cols=42  Identities=26%  Similarity=0.498  Sum_probs=34.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.+.+|.++|+|||||||+++.|+..+..    .++.+++.|.|.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~----~~~~~i~~D~~~   44 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK----LEIVIISQDNYY   44 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc----cCCeEecccccc
Confidence            356789999999999999999999998731    356788888875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.51  E-value=0.00017  Score=70.58  Aligned_cols=85  Identities=16%  Similarity=0.218  Sum_probs=62.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .--++.|||..+.++++|+.....++       .|++               .+..|. ++++||||.||||-+..||++
T Consensus        15 l~wVeKYrP~~l~dIVGNe~tv~rl~-------via~---------------~gnmP~-liisGpPG~GKTTsi~~LAr~   71 (333)
T KOG0991|consen   15 LPWVEKYRPSVLQDIVGNEDTVERLS-------VIAK---------------EGNMPN-LIISGPPGTGKTTSILCLARE   71 (333)
T ss_pred             chHHHhhCchHHHHhhCCHHHHHHHH-------HHHH---------------cCCCCc-eEeeCCCCCchhhHHHHHHHH
Confidence            34789999999999999998655444       3442               145676 467999999999999999998


Q ss_pred             ccccCCCCCeEEEeCCccccchHHHHHH
Q 015774          236 SFWSGAATNAVVVEADAFKETDVIYRAL  263 (400)
Q Consensus       236 lg~~~~~~~avvIdaDefRe~D~irk~L  263 (400)
                      +--+.-..++.-+++.+=|--|+.|..+
T Consensus        72 LLG~~~ke~vLELNASdeRGIDvVRn~I   99 (333)
T KOG0991|consen   72 LLGDSYKEAVLELNASDERGIDVVRNKI   99 (333)
T ss_pred             HhChhhhhHhhhccCccccccHHHHHHH
Confidence            7211123345668887777778887776

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.51  E-value=0.00044  Score=68.46  Aligned_cols=52  Identities=21%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             ccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          201 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       201 v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...+......+.+|.+.|+|||||||++..|+..+  ...+..+.+|+.|...
T Consensus        23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~--~~~~~~v~~i~~D~~~   74 (300)
T TIGR00750        23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL--RRRGLKVAVIAVDPSS   74 (300)
T ss_pred             HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCC
Confidence            334444345678899999999999999999999876  3445677889888544

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK13975 thymidylate kinase; Provisional

Probab=97.50  E-value=0.00082  Score=61.14  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=24.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +.+|++.|++||||||+++.|++.++
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999999995

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.49  E-value=0.00011  Score=69.94  Aligned_cols=42  Identities=19%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +|-++|+|||||||+++.|+..+.-...+.++.+|+.|.|..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~   42 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY   42 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence            467899999999999999999873101245678899999963

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PLN02840 tRNA dimethylallyltransferase

Probab=97.49  E-value=0.00045  Score=72.12  Aligned_cols=45  Identities=22%  Similarity=0.368  Sum_probs=35.8

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|-......+.+|+|.|++||||||++..|++.++       ..+|+.|.+.
T Consensus        12 ~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~-------~~iis~Ds~q   56 (421)
T PLN02840         12 GSGASKTKKEKVIVISGPTGAGKSRLALELAKRLN-------GEIISADSVQ   56 (421)
T ss_pred             CCccccccCCeEEEEECCCCCCHHHHHHHHHHHCC-------CCeEeccccc
Confidence            33333456677999999999999999999999984       3688888763

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.48  E-value=0.00016  Score=72.07  Aligned_cols=47  Identities=17%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .+.|.+|-|+|+|||||||+++.|...+.-....+.+.+++.|.|..
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH  105 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            46799999999999999999998877662101234678899999884

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.48  E-value=0.00013  Score=70.02  Aligned_cols=42  Identities=26%  Similarity=0.478  Sum_probs=36.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +++.+|-++|++||||||+++.|...++-    ..+++|+-|+|..
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~----~~~~~I~~D~YYk   47 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV----EKVVVISLDDYYK   47 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCc----CcceEeecccccc
Confidence            45689999999999999999999999952    2778999999874

>PRK13808 adenylate kinase; Provisional

Probab=97.48  E-value=0.00077  Score=68.46  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=28.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      |+|.|+|||||||++..|++.+|+       ++|+.|++
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~ygl-------~~is~gdl   34 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYGI-------VQLSTGDM   34 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-------ceecccHH
Confidence            788999999999999999999955       89996654

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.47  E-value=0.00045  Score=75.21  Aligned_cols=58  Identities=19%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ...|||..|++++++..++..+...+..                      .+-|..+|++|++|+||||+|..+++.+.+
T Consensus         8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~----------------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c   65 (614)
T PRK14971          8 ARKYRPSTFESVVGQEALTTTLKNAIAT----------------------NKLAHAYLFCGPRGVGKTTCARIFAKTINC   65 (614)
T ss_pred             HHHHCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4689999999999999999988887765                      457899999999999999999999998854

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.45  E-value=0.00018  Score=73.61  Aligned_cols=55  Identities=16%  Similarity=0.180  Sum_probs=40.2

Q ss_pred             hhh-hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          166 RFE-KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       166 rf~-~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      =|. ++.+.+++...+..++..   .+.              .......++++.|||||||||+|..|++.++
T Consensus        48 ~F~~~~~G~~~~i~~lv~~l~~---~a~--------------g~~~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       48 FFDHDFFGMEEAIERFVNYFKS---AAQ--------------GLEERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             ccchhccCcHHHHHHHHHHHHH---HHh--------------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            344 678888876666665554   221              1133567899999999999999999999984

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.45  E-value=0.0048  Score=66.43  Aligned_cols=46  Identities=20%  Similarity=0.266  Sum_probs=35.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +...+|.|.|++|+||||++..|+..+-....+.++.+++.|.+|.
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi  393 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV  393 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            3567888999999999999999998752111234688999999985

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.43  E-value=0.00015  Score=68.79  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..|.+|-|+|++||||||+++.|++.+|+       .++|+|.+-
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~-------~vidaD~i~   41 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNL-------NVVCADTIS   41 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCC-------eEEeccHHH
Confidence            46889999999999999999999998854       689988764

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.43  E-value=0.00015  Score=67.93  Aligned_cols=37  Identities=35%  Similarity=0.459  Sum_probs=31.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.|.+|-++|++||||||+++.|.. +|+       .++|+|.+-
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~-------~v~d~D~i~   39 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGC-------ELFEADRVA   39 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCC-------eEEeccHHH
Confidence            5678999999999999999999996 544       899988654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.42  E-value=0.00019  Score=56.02  Aligned_cols=32  Identities=34%  Similarity=0.584  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      +|+++|+|||||||+++.|++.++    +.+..+++
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~----~~~~~~i~   32 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLG----GRSVVVLD   32 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhc----CCCEEEEe
Confidence            478899999999999999999961    23556664

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.42  E-value=0.00041  Score=73.12  Aligned_cols=75  Identities=20%  Similarity=0.222  Sum_probs=52.4

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774          163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA  242 (400)
Q Consensus       163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~  242 (400)
                      -.-+|+++.+.+.++..+.++++-++.-.         .....  ..+.|.-+||.||||+|||++++.++...+.    
T Consensus        50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~---------~~~~~--g~~~~~giLL~GppGtGKT~la~alA~~~~~----  114 (495)
T TIGR01241        50 PKVTFKDVAGIDEAKEELMEIVDFLKNPS---------KFTKL--GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV----  114 (495)
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHCHH---------HHHhc--CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC----
Confidence            34689999999999988888777532210         00000  1345667999999999999999999999854    


Q ss_pred             CCeEEEeCCcc
Q 015774          243 TNAVVVEADAF  253 (400)
Q Consensus       243 ~~avvIdaDef  253 (400)
                       +.+.+++.+|
T Consensus       115 -~~~~i~~~~~  124 (495)
T TIGR01241       115 -PFFSISGSDF  124 (495)
T ss_pred             -CeeeccHHHH
Confidence             5555654443

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.42  E-value=3.7e-05  Score=67.68  Aligned_cols=23  Identities=43%  Similarity=0.767  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +|+|.|++||||||+++.|++.+
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            47889999999999999999985

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=97.39  E-value=0.00076  Score=63.13  Aligned_cols=33  Identities=33%  Similarity=0.491  Sum_probs=28.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+|.++|++||||||+++.|+. +|       +.+||+|.+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g-------~~vid~D~i   34 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EG-------FLIVDADQV   34 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC-------CeEEeCcHH
Confidence            3789999999999999999987 54       489999975

>PLN02748 tRNA dimethylallyltransferase

Probab=97.39  E-value=0.00041  Score=73.35  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=32.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.+.+|+|.|++||||||++..||..+       ++.+|++|.+
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~-------~~eii~~Dsm   56 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHF-------PVEIINADSM   56 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhc-------CeeEEcCchh
Confidence            556699999999999999999999998       4589999964

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.38  E-value=2.5e-05  Score=71.22  Aligned_cols=79  Identities=24%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccc----------------cCCCCCeEEEeCCccccchHHHHHHhcC-----CCCC
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFW----------------SGAATNAVVVEADAFKETDVIYRALSSK-----GHHD  270 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~----------------~~~~~~avvIdaDefRe~D~irk~L~~~-----G~~~  270 (400)
                      +.+|+|+||+||||||+++.|.+.+.-                +.+|.++.+++.++|.      +.+...     +...
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~------~~~~~~~fie~~~~~   75 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFE------RMIKAGEFIEYGEYD   75 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHH------HHHHTTHEEEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhh------hhhccccEEEEeeec
Confidence            568899999999999999999987631                2235556666666554      112111     1000


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECc
Q 015774          271 DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT  306 (400)
Q Consensus       271 d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT  306 (400)
                      +..+          .....-+..++++|..+|+|..
T Consensus        76 g~~Y----------Gt~~~~i~~~~~~gk~~il~~~  101 (183)
T PF00625_consen   76 GNYY----------GTSKSAIDKVLEEGKHCILDVD  101 (183)
T ss_dssp             TEEE----------EEEHHHHHHHHHTTTEEEEEET
T ss_pred             chhh----------hhccchhhHhhhcCCcEEEEcc
Confidence            0111          1111234558889999999976

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.37  E-value=0.00075  Score=65.78  Aligned_cols=56  Identities=23%  Similarity=0.226  Sum_probs=42.4

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +.|+++++...++..+..++...+.                  ....|.-+++.|+||+||||+++.+++.++.
T Consensus         1 ~~~~~~iG~~~~~~~l~~~l~~~~~------------------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635         1 KLLAEFIGQEKVKEQLQLFIEAAKM------------------RQEALDHLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             CCHHHHcCHHHHHHHHHHHHHHHHh------------------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3688889988888887777764211                  0223445789999999999999999999853

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.36  E-value=0.0003  Score=69.98  Aligned_cols=77  Identities=25%  Similarity=0.423  Sum_probs=50.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC----------C--CC--C--hh--hHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------G--HH--D--DM--LQT  275 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~----------G--~~--~--d~--~~a  275 (400)
                      +|+++|++|||||+++..|++.+       ++.+|+.|.+.    +|+.+.-.          +  |+  +  ++  .+.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~-------~~~iis~Ds~q----vY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~   69 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKL-------NAEIISVDSMQ----IYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS   69 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC-------CCcEEEechhh----eeeeccccCCCCCHHHHcCccEEEEEEechhheEc
Confidence            58999999999999999999998       44789999864    23333110          1  10  0  11  111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcEEEEC
Q 015774          276 AELVHQSSTDAASSLLVTALNEGRDVIMDG  305 (400)
Q Consensus       276 a~~v~~~~~~~ae~lie~AL~eG~dVIIDg  305 (400)
                      .    ......+...++...+.|...|+.|
T Consensus        70 v----~~f~~~a~~~i~~~~~~g~~pi~vG   95 (287)
T TIGR00174        70 A----ADFQTLALNAIADITARGKIPLLVG   95 (287)
T ss_pred             H----HHHHHHHHHHHHHHHhCCCCEEEEc
Confidence            1    2234556678888899998666654

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PTZ00301 uridine kinase; Provisional

Probab=97.35  E-value=0.00023  Score=67.51  Aligned_cols=41  Identities=22%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCC-eEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~-avvIdaDefR  254 (400)
                      .+|-|+|+|||||||+|+.|++++. ...+++ +.++.-|.|.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~-~~~~~~~~~vi~~D~yy   45 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELM-AHCGPVSIGVICEDFYY   45 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHH-hhcCCCeEEEeCCCCCc
Confidence            6899999999999999999987762 011223 4578888886

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.33  E-value=0.00081  Score=69.78  Aligned_cols=47  Identities=15%  Similarity=0.302  Sum_probs=40.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~  256 (400)
                      .++.+|.+.||.|+||||+..+||.++.......++-+|..|+||.-
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG  247 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG  247 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence            34889999999999999999999999853355668899999999953

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.33  E-value=0.0012  Score=59.10  Aligned_cols=27  Identities=37%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             CCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          221 MGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       221 PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |||||||+++.||+.++|       .++|.|.+-
T Consensus         1 ~GsGKStvg~~lA~~L~~-------~fiD~D~~i   27 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGR-------PFIDLDDEI   27 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTS-------EEEEHHHHH
T ss_pred             CCCcHHHHHHHHHHHhCC-------CccccCHHH
Confidence            799999999999999977       899988765

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PLN02199 shikimate kinase

Probab=97.32  E-value=0.001  Score=66.80  Aligned_cols=36  Identities=28%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..-|+|.|.|||||||+++.|++.+||       .+||+|.+-
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~-------~fIDtD~lI  137 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGY-------TFFDCDTLI  137 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC-------CEEehHHHH
Confidence            346899999999999999999999976       799988755

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.31  E-value=0.00022  Score=70.66  Aligned_cols=40  Identities=28%  Similarity=0.417  Sum_probs=34.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +|.++|++||||||+++.|.+.++  ..+.++.+|+.|.|..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH--hcCCceEEEecccccc
Confidence            578999999999999999999883  3344689999999985

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00017 cmk cytidylate kinase

Probab=97.28  E-value=0.00026  Score=67.35  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=30.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+|.+.|++||||||+++.|++++++       .+++++.+.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~-------~~~~~g~~~   37 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGY-------AYLDSGAMY   37 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC-------ceeeCchHH
Confidence            468999999999999999999999965       677877654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.25  E-value=0.0017  Score=68.91  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -|+++|+|||||||+++.|++.+|+       .++|.|...
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~-------~~id~D~~i   35 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDL-------QFIDMDEEI   35 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCC-------eEEECcHHH
Confidence            3799999999999999999999966       799999765

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.25  E-value=0.0037  Score=58.41  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +|.++|.||+||||+++.|+ .+|+
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~   25 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGY   25 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCC
Confidence            68999999999999999999 7776

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.25  E-value=0.00066  Score=57.22  Aligned_cols=54  Identities=17%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccc---cCCCCCeEEEeCCccccchHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW---SGAATNAVVVEADAFKETDVIYRALS  264 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~---~~~~~~avvIdaDefRe~D~irk~L~  264 (400)
                      ...++++.|+||+||||+++.++..+..   .....+++.++...-.....++..+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   59 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEIL   59 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHH
Confidence            4568999999999999999999998621   00024667776555443334444443

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.23  E-value=0.00045  Score=75.26  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -..||++.|.+++++..+...+..++..                      .+-+..+|+.|++|+||||+|+.+|+.+++
T Consensus         7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~----------------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c   64 (620)
T PRK14948          7 HHKYRPQRFDELVGQEAIATTLKNALIS----------------------NRIAPAYLFTGPRGTGKTSSARILAKSLNC   64 (620)
T ss_pred             HHHhCCCcHhhccChHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence            3679999999999999998888777765                      233457899999999999999999999875

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.23  E-value=0.0031  Score=62.22  Aligned_cols=42  Identities=19%  Similarity=0.257  Sum_probs=35.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++..+.+.|++|+||||++..|+..+  ..++..+.+++.|.+|
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSR  115 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCC
Confidence            55789999999999999999999887  3345678889999987

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.22  E-value=0.00033  Score=66.32  Aligned_cols=35  Identities=34%  Similarity=0.527  Sum_probs=30.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+|-++|.|||||||+++.+++ +|+       .+||+|.+-
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~-------~vidaD~v~   36 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGF-------PVIDADDVA   36 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCC-------eEEEccHHH
Confidence            46899999999999999999999 755       899988754

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.21  E-value=0.0013  Score=59.81  Aligned_cols=25  Identities=32%  Similarity=0.630  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +|.+.|++||||||+++.|++.+++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~   25 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGY   25 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998754

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.20  E-value=0.00048  Score=66.08  Aligned_cols=35  Identities=29%  Similarity=0.487  Sum_probs=28.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+.|..+++.|+||+||||+|+.|+..         .++++.|.
T Consensus         9 ~~~~~~~liyG~~G~GKtt~a~~~~~~---------~~~~~~d~   43 (220)
T TIGR01618         9 KRIPNMYLIYGKPGTGKTSTIKYLPGK---------TLVLSFDM   43 (220)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHhcCCC---------CEEEeccc
Confidence            456888999999999999999998633         37888776

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.20  E-value=0.0016  Score=58.00  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      |.|+|+||+||||+++.|++. |+
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~   24 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GY   24 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CC
Confidence            689999999999999999988 65

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.19  E-value=0.0024  Score=68.53  Aligned_cols=35  Identities=29%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..|+|.|.|||||||+++.||+.++|       -++|.|..-
T Consensus         7 ~~i~LiG~~GaGKttvg~~LA~~L~~-------~fiD~D~~i   41 (542)
T PRK14021          7 PQAVIIGMMGAGKTRVGKEVAQMMRL-------PFADADVEI   41 (542)
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCC-------CEEEchHHH
Confidence            36788999999999999999999987       699999754

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=97.19  E-value=0.0022  Score=58.17  Aligned_cols=86  Identities=17%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc-cchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHHHHHHHH
Q 015774          217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSLLVTA  294 (400)
Q Consensus       217 L~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR-e~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae~lie~A  294 (400)
                      +-|+.||||||+++.|.+.+  ++.+.++++.-...-. ....+++.+...... ++ .+....+... .......+..+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l--~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~-~~-~~~~~l~~a~r~~~~~~~I~~~   76 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEAL--KEKGYKVIITFPPGSTPIGELIRELLRSESEL-SP-EAEALLFAADRAWHLARVIRPA   76 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHH--HHTTEEEEEEESSTSSHHHHHHHHHHHTSSTC-GH-HHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHH--HHcCCcccccCCCCCChHHHHHHHHHhcccCC-CH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999998  3344442232222111 112334444422111 12 2222222222 23444577889


Q ss_pred             HhCCCcEEEECc
Q 015774          295 LNEGRDVIMDGT  306 (400)
Q Consensus       295 L~eG~dVIIDgT  306 (400)
                      +++|..||+|--
T Consensus        77 l~~g~~VI~DRy   88 (186)
T PF02223_consen   77 LKRGKIVICDRY   88 (186)
T ss_dssp             HHTTSEEEEESE
T ss_pred             HcCCCEEEEech
Confidence            999999999964

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.19  E-value=0.00074  Score=55.80  Aligned_cols=42  Identities=29%  Similarity=0.417  Sum_probs=31.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+..+++.|+||+||||+++.++..+.  ..+..++.++.+.+.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~   59 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLL   59 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhh
Confidence            445789999999999999999999872  233466777655544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.19  E-value=0.00035  Score=74.54  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=33.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..|.+|.+.|+|||||||+++.|++.+|+       .++|+|.+.
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~-------~~~d~g~~Y  319 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGL-------LYLDTGAMY  319 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCC-------eEecCCcee
Confidence            46789999999999999999999999965       899977765

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.15  E-value=0.00074  Score=62.01  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=22.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ||++|.||+||||++..||+.+++
T Consensus        10 ILvtGTPG~GKstl~~~lae~~~~   33 (176)
T KOG3347|consen   10 ILVTGTPGTGKSTLAERLAEKTGL   33 (176)
T ss_pred             EEEeCCCCCCchhHHHHHHHHhCC
Confidence            789999999999999999999866

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.15  E-value=0.0019  Score=60.53  Aligned_cols=33  Identities=36%  Similarity=0.403  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.++|++||||||+++.|+. +|       ..++++|.+-
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g-------~~~i~~D~i~   33 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LG-------AFGISADRLA   33 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CC-------CEEEecchHH
Confidence            478999999999999998865 44       4899999874

>PRK07933 thymidylate kinase; Validated

Probab=97.13  E-value=0.0031  Score=59.65  Aligned_cols=90  Identities=20%  Similarity=0.243  Sum_probs=51.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-C---CccccchHHHHHHhcC-CCCChhhHhHHHHHHHH-HHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-A---DAFKETDVIYRALSSK-GHHDDMLQTAELVHQSS-TDAA  287 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-a---DefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~-~~~a  287 (400)
                      +|.+.|.-||||||+++.|++.+.  ..+.+++++. +   +..- .+.+++.+.+. +.......+....+... ....
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~--~~g~~v~~~~~P~~~~~~~-g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~   78 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALE--ARGRSVATLAFPRYGRSVH-ADLAAEALHGRHGDLADSVYAMATLFALDRAGAR   78 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCCCCc-cHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhH
Confidence            789999999999999999999994  3444555443 1   1111 23455555432 11101111112221111 1111


Q ss_pred             HHHHHHHHhCCCcEEEECcC
Q 015774          288 SSLLVTALNEGRDVIMDGTL  307 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~  307 (400)
                       ..+..+++.|..||.|-..
T Consensus        79 -~~I~p~l~~g~~VI~DRy~   97 (213)
T PRK07933         79 -DELAGLLAAHDVVILDRYV   97 (213)
T ss_pred             -HHHHHHHhCCCEEEECCcc
Confidence             2466788999999999654

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.12  E-value=0.0008  Score=73.59  Aligned_cols=64  Identities=20%  Similarity=0.167  Sum_probs=51.7

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .-.+.|||+.+++++.+.+....+.+|++.+..                  ......+++|.|+||+||||+++.++..+
T Consensus        73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~------------------~~~~~~illL~GP~GsGKTTl~~~la~~l  134 (637)
T TIGR00602        73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL------------------ENAPKRILLITGPSGCGKSTTIKILSKEL  134 (637)
T ss_pred             chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc------------------ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999888878888776211                  02234589999999999999999999988


Q ss_pred             cc
Q 015774          237 FW  238 (400)
Q Consensus       237 g~  238 (400)
                      ++
T Consensus       135 ~~  136 (637)
T TIGR00602       135 GI  136 (637)
T ss_pred             hh
Confidence            64

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.12  E-value=0.00084  Score=62.90  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +..+++.|++|+|||+++..++...  ...+..+++++++.+.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~--~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADA--SYGGRNARYLDAASPL   82 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEehHHhH
Confidence            4467999999999999999999876  2335577888877654

>CHL00176 ftsH cell division protein; Validated

Probab=97.12  E-value=0.0017  Score=71.04  Aligned_cols=75  Identities=20%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      .-+|+++.+-++++..+.++++-++.-.      .+..   +  ..+.|.-+|+.|+||+|||++|+.++.+.+.     
T Consensus       179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~------~~~~---~--g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-----  242 (638)
T CHL00176        179 GITFRDIAGIEEAKEEFEEVVSFLKKPE------RFTA---V--GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-----  242 (638)
T ss_pred             CCCHHhccChHHHHHHHHHHHHHHhCHH------HHhh---c--cCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----
Confidence            3688999998899988888876533211      1110   1  1345677999999999999999999998854     


Q ss_pred             CeEEEeCCccc
Q 015774          244 NAVVVEADAFK  254 (400)
Q Consensus       244 ~avvIdaDefR  254 (400)
                      ..+.+++.+|.
T Consensus       243 p~i~is~s~f~  253 (638)
T CHL00176        243 PFFSISGSEFV  253 (638)
T ss_pred             CeeeccHHHHH
Confidence            55666655543

>PLN02796 D-glycerate 3-kinase

Probab=97.11  E-value=0.00095  Score=68.14  Aligned_cols=53  Identities=19%  Similarity=0.220  Sum_probs=40.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS  264 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~  264 (400)
                      ..|.+|-|+|++||||||+++.|...+.  ..+..+..|+-|+|.-....+..+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~--~~g~~~g~IsiDdfYLt~~e~~~L~  150 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFN--ATGRRAASLSIDDFYLTAADQAKLA  150 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhc--ccCCceeEEEECCcccchhhHHHHH
Confidence            5789999999999999999999999883  2334577888899874444344443

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.11  E-value=0.00052  Score=58.74  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++++.|+||+||||++..++...  ...+..+++++.+.-.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~   39 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI   39 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence            47899999999999999999887  3345678888877654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>CHL00181 cbbX CbbX; Provisional

Probab=97.09  E-value=0.00082  Score=66.50  Aligned_cols=76  Identities=12%  Similarity=0.107  Sum_probs=49.2

Q ss_pred             hhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH--HHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHH
Q 015774          151 KTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKA--IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTV  228 (400)
Q Consensus       151 ~~~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~--i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTl  228 (400)
                      |+..++.-++...+.=++.+.+-..+|..+.+++.-+..  +..     ...    +.. ...+.-+++.|+||+||||+
T Consensus         6 ~~~~~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~-----~~g----~~~-~~~~~~ill~G~pGtGKT~l   75 (287)
T CHL00181          6 QEEYEKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRK-----NLG----LTS-SNPGLHMSFTGSPGTGKTTV   75 (287)
T ss_pred             hhhccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH-----HcC----CCC-CCCCceEEEECCCCCCHHHH
Confidence            344455556666666667788888889888887753211  110     001    111 22344588999999999999


Q ss_pred             HHHHHHhc
Q 015774          229 LKDIMKES  236 (400)
Q Consensus       229 Ak~LA~~l  236 (400)
                      |+.+++.+
T Consensus        76 Ar~la~~~   83 (287)
T CHL00181         76 ALKMADIL   83 (287)
T ss_pred             HHHHHHHH
Confidence            99998865

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.09  E-value=0.0032  Score=66.07  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=49.8

Q ss_pred             hhhhhHHHHHHHHHHH-HHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774          170 VTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (400)
Q Consensus       170 v~~~~~vkr~~~~lie-e~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI  248 (400)
                      |++.+.+++.++..+- .|+...         +..+.. ..-.|.-|+|.|+||+||||+|+.|++.++.     +.+.+
T Consensus        17 IiGQe~AkkalavAl~~~~~r~~---------l~~~~~-~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~-----~fi~v   81 (443)
T PRK05201         17 IIGQDDAKRAVAIALRNRWRRMQ---------LPEELR-DEVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKV   81 (443)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhc---------CCcccc-cccCCceEEEECCCCCCHHHHHHHHHHHhCC-----hheee
Confidence            7778888888877764 343321         111111 1234678999999999999999999999854     67778


Q ss_pred             eCCcccc
Q 015774          249 EADAFKE  255 (400)
Q Consensus       249 daDefRe  255 (400)
                      |...|.+
T Consensus        82 D~t~f~e   88 (443)
T PRK05201         82 EATKFTE   88 (443)
T ss_pred             cchhhcc
Confidence            7776764

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.09  E-value=0.00043  Score=66.02  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=30.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.+|.+.|+|||||||+++.|++.+|+       .+++.|.+
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~-------~~~~~~~~   38 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGF-------HYLDTGAM   38 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC-------CcccCchh
Confidence            578999999999999999999999966       67887764

>PLN02348 phosphoribulokinase

Probab=97.08  E-value=0.00075  Score=69.93  Aligned_cols=47  Identities=17%  Similarity=0.287  Sum_probs=37.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-------------CCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-------------ATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-------------~~~avvIdaDefRe  255 (400)
                      .+.|.+|-|+|+|||||||+++.|++.++....             ...+.+|..|+|..
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~  105 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS  105 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence            367899999999999999999999999852100             13568899999963

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.0016  Score=65.54  Aligned_cols=81  Identities=22%  Similarity=0.411  Sum_probs=54.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC----------C--C------CChh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------G--H------HDDM  272 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~----------G--~------~~d~  272 (400)
                      .|.+|+|+||.+||||-++-.||++++       ..+||.|.+-    +|+.|.-.          +  |      ....
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~-------~eIIs~DSmQ----vYr~mdIGTAKps~~e~~~vpHhliDi~~p~e   70 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLG-------GEIISLDSMQ----VYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE   70 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcC-------CcEEecchhh----hcCCCcccCCCCCHHHHcCCCEEEecccCccc
Confidence            477999999999999999999999994       4899999764    34444110          1  1      0112


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHhCCC-cEEEECc
Q 015774          273 LQTAELVHQSSTDAASSLLVTALNEGR-DVIMDGT  306 (400)
Q Consensus       273 ~~aa~~v~~~~~~~ae~lie~AL~eG~-dVIIDgT  306 (400)
                      .+++...+    ..+...++...+.|. .+|+=||
T Consensus        71 ~ysa~~f~----~~a~~~i~~i~~rgk~pIlVGGT  101 (308)
T COG0324          71 SYSAAEFQ----RDALAAIDDILARGKLPILVGGT  101 (308)
T ss_pred             cccHHHHH----HHHHHHHHHHHhCCCCcEEEccH
Confidence            33333333    445557788889996 5555555

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.04  E-value=0.00041  Score=68.33  Aligned_cols=39  Identities=23%  Similarity=0.375  Sum_probs=28.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      ..+..+|=++|+||+||||+...|...+  .+.+..+-+|.
T Consensus        26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~--~~~g~~VaVlA   64 (266)
T PF03308_consen   26 TGRAHVIGITGPPGAGKSTLIDALIREL--RERGKRVAVLA   64 (266)
T ss_dssp             TT-SEEEEEEE-TTSSHHHHHHHHHHHH--HHTT--EEEEE
T ss_pred             cCCceEEEeeCCCCCcHHHHHHHHHHHH--hhcCCceEEEE
Confidence            4467799999999999999999999998  55566665554

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.03  E-value=0.0013  Score=68.96  Aligned_cols=53  Identities=17%  Similarity=0.177  Sum_probs=41.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL  263 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L  263 (400)
                      ...|.+|-|.|++||||||+++.|...+  +..+.++..|+-|+|.-.+..+..+
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL--~~~g~~vgvISiDDfYLt~eer~kL  261 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLF--RVTGRKSATLSIDDFYLTAEGQAEL  261 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh--cccCCceEEEEECCccCChHHHHHH
Confidence            3479999999999999999999998776  2234467889999998544544444

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.03  E-value=0.0017  Score=71.82  Aligned_cols=73  Identities=22%  Similarity=0.214  Sum_probs=48.4

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      .+|+++.+.+.++..+.+.++-...-        ..+...+  ..+.|.-+|+.|+||+|||++|+.++.+++.     +
T Consensus       450 ~~~~di~g~~~~k~~l~~~v~~~~~~--------~~~~~~~--g~~~~~giLL~GppGtGKT~lakalA~e~~~-----~  514 (733)
T TIGR01243       450 VRWSDIGGLEEVKQELREAVEWPLKH--------PEIFEKM--GIRPPKGVLLFGPPGTGKTLLAKAVATESGA-----N  514 (733)
T ss_pred             cchhhcccHHHHHHHHHHHHHhhhhC--------HHHHHhc--CCCCCceEEEECCCCCCHHHHHHHHHHhcCC-----C
Confidence            46777777778887777766521000        0011111  1346777999999999999999999999854     6


Q ss_pred             eEEEeCCc
Q 015774          245 AVVVEADA  252 (400)
Q Consensus       245 avvIdaDe  252 (400)
                      .+.+++.+
T Consensus       515 fi~v~~~~  522 (733)
T TIGR01243       515 FIAVRGPE  522 (733)
T ss_pred             EEEEehHH
Confidence            66676443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.03  E-value=0.0018  Score=67.10  Aligned_cols=60  Identities=15%  Similarity=0.165  Sum_probs=46.7

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .|++|++++.++..+...++....          .   +-....+.|+.+|+.||||+||||+|..+|+.+.+
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~----------~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c   62 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARA----------D---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC   62 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccc----------c---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            588999999999999988886221          0   00011346899999999999999999999998755

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.02  E-value=0.0034  Score=62.97  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      =.+.||+.|.+-++.+++|..+.-.|+.-|.                  ....+-=+|+.||||-||||+|.-+|+++| 
T Consensus        17 e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~------------------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-   77 (332)
T COG2255          17 ERSLRPKTLDEFIGQEKVKEQLQIFIKAAKK------------------RGEALDHVLLFGPPGLGKTTLAHIIANELG-   77 (332)
T ss_pred             hcccCcccHHHhcChHHHHHHHHHHHHHHHh------------------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-
Confidence            3468999999999999999999988886222                  134455689999999999999999999996 


Q ss_pred             cCCCCCeEEEeCCccc
Q 015774          239 SGAATNAVVVEADAFK  254 (400)
Q Consensus       239 ~~~~~~avvIdaDefR  254 (400)
                          .+....++-.+-
T Consensus        78 ----vn~k~tsGp~le   89 (332)
T COG2255          78 ----VNLKITSGPALE   89 (332)
T ss_pred             ----CCeEeccccccc
Confidence                366666555443

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.02  E-value=0.0058  Score=63.35  Aligned_cols=64  Identities=16%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .-+|.+|.+-+..+..+.+.++-...  .      ..+...+  .-..|.-+++.|+||+|||++++.++..++
T Consensus       141 ~v~~~digGl~~~k~~l~~~v~~pl~--~------~~~~~~~--Gl~~pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        141 DVTYSDIGGLDIQKQEIREAVELPLT--C------PELYEQI--GIDPPRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             CCCHHHcCCHHHHHHHHHHHHHHHhc--C------HHHHHhc--CCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            35788888888888887777763110  0      0000000  024678899999999999999999999984

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.01  E-value=0.0011  Score=61.38  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=33.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+..++|.|++|+||||+++.++....  ..+..++.++.+.+.
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHH
Confidence            456889999999999999999998862  234567888877664

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.99  E-value=0.0031  Score=58.38  Aligned_cols=77  Identities=18%  Similarity=0.103  Sum_probs=52.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcc-ccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg-~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~  293 (400)
                      |+=.+.+|+||||++.+|.+-+| |       -+|..|++....              ..    .       .+...++.
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~w-------gHvQnDnI~~k~--------------~~----~-------f~~~~l~~   49 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEW-------GHVQNDNITGKR--------------KP----K-------FIKAVLEL   49 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCC-------CccccCCCCCCC--------------HH----H-------HHHHHHHH
Confidence            44478999999999999999999 8       689989886310              10    1       11112222


Q ss_pred             HHhCCC-cEEEECcCCChHHHHHHHHHHHhh
Q 015774          294 ALNEGR-DVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       294 AL~eG~-dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      +.+.+. -||.|=.+.....|+++++..++.
T Consensus        50 L~~~~~~vViaDRNNh~~reR~ql~~~~~~~   80 (168)
T PF08303_consen   50 LAKDTHPVVIADRNNHQKRERKQLFEDVSQL   80 (168)
T ss_pred             HhhCCCCEEEEeCCCchHHHHHHHHHHHHHh
Confidence            223444 566676778888899998888764

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.99  E-value=0.0013  Score=63.45  Aligned_cols=63  Identities=13%  Similarity=0.204  Sum_probs=38.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+..++-..+|..+.+++.-.+.-.. ...  ..    +. ..+.+.-+++.|+||+||||+|+.+++.+
T Consensus         4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~--~g----~~-~~~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881         4 ELSRMVGLDEVKALIKEIYAWIQINEK-RKE--EG----LK-TSKQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHH-HHH--cC----CC-CCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            345667777888887777653221110 000  00    01 12233457889999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.98  E-value=0.0014  Score=67.45  Aligned_cols=39  Identities=23%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ..|.-|++.|+||+|||++|+.++.+++.     ..+.+++.++
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~-----~~i~v~~~~l  201 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNA-----TFIRVVGSEL  201 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCC-----CEEEeehHHH
Confidence            56778999999999999999999999853     5566654443

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.98  E-value=0.00085  Score=67.36  Aligned_cols=51  Identities=20%  Similarity=0.274  Sum_probs=39.2

Q ss_pred             ccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          199 TDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       199 ~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      +.+...+.+...++.+|=++|+||+||||+..+|..++  .+.|..+-+|.-|
T Consensus        38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l--~~~G~rVaVlAVD   88 (323)
T COG1703          38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL--RERGHRVAVLAVD   88 (323)
T ss_pred             HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH--HHCCcEEEEEEEC
Confidence            45555555556788999999999999999999999998  5566666555433

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.97  E-value=0.00092  Score=61.31  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ++++.|+|||||||+|..++.+++     .+.++|++..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~   36 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQ   36 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCC
Confidence            689999999999999999999874     2556776543

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=96.96  E-value=0.00068  Score=65.94  Aligned_cols=35  Identities=34%  Similarity=0.515  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|-|+|.+||||||+++.|.+.+|+       .+||+|.+-
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~-------~viDaD~ia   36 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHI-------EVIDADLVV   36 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC-------eEEehHHHH
Confidence            37899999999999999999988755       899988764

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=96.96  E-value=0.00056  Score=73.06  Aligned_cols=59  Identities=22%  Similarity=0.324  Sum_probs=52.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +--.|||++|.++++.+-+...+.+.++.                      .+-++.++++|+-|+||||+|+.+|+.+.
T Consensus         6 L~rKyRP~~F~evvGQe~v~~~L~nal~~----------------------~ri~hAYlfsG~RGvGKTt~Ari~AkalN   63 (515)
T COG2812           6 LARKYRPKTFDDVVGQEHVVKTLSNALEN----------------------GRIAHAYLFSGPRGVGKTTIARILAKALN   63 (515)
T ss_pred             HHHHhCcccHHHhcccHHHHHHHHHHHHh----------------------CcchhhhhhcCCCCcCchhHHHHHHHHhc
Confidence            34579999999999999999999998886                      45567899999999999999999999997


Q ss_pred             c
Q 015774          238 W  238 (400)
Q Consensus       238 ~  238 (400)
                      +
T Consensus        64 C   64 (515)
T COG2812          64 C   64 (515)
T ss_pred             C
Confidence            6

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=96.96  E-value=0.0052  Score=58.82  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++=++|..||||||+++.+- .+|       +.+||+|.+-
T Consensus         3 iVGLTGgiatGKStVs~~f~-~~G-------~~vIDaD~va   35 (225)
T KOG3220|consen    3 IVGLTGGIATGKSTVSQVFK-ALG-------IPVIDADVVA   35 (225)
T ss_pred             EEEeecccccChHHHHHHHH-HcC-------CcEecHHHHH
Confidence            66789999999999999987 554       4899977543

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=96.95  E-value=0.0014  Score=66.02  Aligned_cols=75  Identities=13%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      -.+.|||++|++++..+.+..++..-+..                      ..-| ..|+-||||+|||+.|..++.+++
T Consensus        26 wteKYrPkt~de~~gQe~vV~~L~~a~~~----------------------~~lp-~~LFyGPpGTGKTStalafar~L~   82 (346)
T KOG0989|consen   26 WTEKYRPKTFDELAGQEHVVQVLKNALLR----------------------RILP-HYLFYGPPGTGKTSTALAFARALN   82 (346)
T ss_pred             hHHHhCCCcHHhhcchHHHHHHHHHHHhh----------------------cCCc-eEEeeCCCCCcHhHHHHHHHHHhc
Confidence            47899999999999988887777665544                      1234 578899999999999999999986


Q ss_pred             ccCCCC-CeEEEeCCcccc
Q 015774          238 WSGAAT-NAVVVEADAFKE  255 (400)
Q Consensus       238 ~~~~~~-~avvIdaDefRe  255 (400)
                      .++-.+ ++.-+++++.|-
T Consensus        83 ~~~~~~~rvl~lnaSderG  101 (346)
T KOG0989|consen   83 CEQLFPCRVLELNASDERG  101 (346)
T ss_pred             Cccccccchhhhccccccc
Confidence            522222 223346666663

>PRK13974 thymidylate kinase; Provisional

Probab=96.95  E-value=0.008  Score=56.42  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..+|.+.|++||||||.++.|++.+.
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999999883

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.94  E-value=0.0024  Score=64.01  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=31.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.+|+++||.|||||.+|-.||++.+        .+||+|.+-
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~~~--------eIIsaDS~Q   38 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKGKA--------EIINVDSIQ   38 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC--------cEEeccHHH
Confidence            345899999999999999999999842        699999864

>cd01394 radB RadB

Probab=96.94  E-value=0.0012  Score=61.28  Aligned_cols=42  Identities=14%  Similarity=0.312  Sum_probs=35.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ....++++.|+|||||||++..++....  ..+.+++++++|.-
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~   58 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGL   58 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCC
Confidence            5678999999999999999999998762  34668889998753

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=96.94  E-value=0.0019  Score=66.53  Aligned_cols=78  Identities=22%  Similarity=0.187  Sum_probs=60.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ..+.+|++.|.|||||||++.......       ++.++++|.+-.                +        +.+..    
T Consensus       267 ~~~eiV~~vgfp~sGks~f~a~~~~~~-------~y~~vn~d~lg~----------------~--------~~C~~----  311 (422)
T KOG2134|consen  267 GHGEIVVAVGFPGSGKSTFAAKRVVPN-------GYKIVNADTLGT----------------P--------QNCLL----  311 (422)
T ss_pred             CCCcEEEEEecCCCCcchhhhhhcccC-------ceeEeecccCCC----------------c--------hhhHH----
Confidence            445899999999999999999877665       458899887641                1        11211    


Q ss_pred             HHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ...+++..|.+||+|+|......++.+++.+++
T Consensus       312 ~~~e~l~~~~sVvidnt~pd~~sr~~~~~~a~e  344 (422)
T KOG2134|consen  312 ANAEALKHGKSVVIDNTNPDAESRKYYLDCATE  344 (422)
T ss_pred             HHHHHhhcccEEeeCCCCcchHHHHHHhhhHHH
Confidence            334589999999999999999999999887664

>PRK13976 thymidylate kinase; Provisional

Probab=96.93  E-value=0.0064  Score=57.54  Aligned_cols=90  Identities=21%  Similarity=0.235  Sum_probs=49.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCC-C-CCeEEE-eCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGA-A-TNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASS  289 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~-~-~~avvI-daDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae~  289 (400)
                      +|.+-|.-||||||.++.|++.+  +.. + .++++. .+..-.-...+++.+.+.... ++ .+....+-.. ......
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L--~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~-~~-~~~~llf~a~R~~~~~~   77 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYL--SDIYGENNVVLTREPGGTSFNELVRGLLLSLKNL-DK-ISELLLFIAMRREHFVK   77 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--HHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCC-CH-HHHHHHHHHHHHHHHHH
Confidence            78999999999999999999998  322 2 133322 111100112344444332111 11 1111221211 222345


Q ss_pred             HHHHHHhCCCcEEEECcC
Q 015774          290 LLVTALNEGRDVIMDGTL  307 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~  307 (400)
                      ++..++++|..||.|--.
T Consensus        78 ~I~p~l~~G~~VI~DRy~   95 (209)
T PRK13976         78 VILPALLQGKIVICDRFI   95 (209)
T ss_pred             HHHHHHHCCCEEEECCCc
Confidence            688899999999999543

>PRK07429 phosphoribulokinase; Provisional

Probab=96.93  E-value=0.0014  Score=66.35  Aligned_cols=43  Identities=28%  Similarity=0.377  Sum_probs=35.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ...|.+|-|+|++||||||+++.|+..++-    .++.++..|+|..
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~----~~~~vi~~Dd~~~   47 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGE----ELVTVICTDDYHS   47 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhcc----CceEEEEeccccc
Confidence            467899999999999999999999999852    2456788888863

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.93  E-value=0.0014  Score=72.62  Aligned_cols=60  Identities=20%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..+.+||+.|+++++.+.+......+..-   +.                ..+.|. +++.|+||+||||+|+.+++...
T Consensus        18 Laek~RP~tldd~vGQe~ii~~~~~L~~~---i~----------------~~~~~s-lLL~GPpGtGKTTLA~aIA~~~~   77 (725)
T PRK13341         18 LADRLRPRTLEEFVGQDHILGEGRLLRRA---IK----------------ADRVGS-LILYGPPGVGKTTLARIIANHTR   77 (725)
T ss_pred             hHHhcCCCcHHHhcCcHHHhhhhHHHHHH---Hh----------------cCCCce-EEEECCCCCCHHHHHHHHHHHhc
Confidence            56789999999999887665432222222   11                023344 47899999999999999999874

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.91  E-value=0.001  Score=59.61  Aligned_cols=39  Identities=21%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +++|.|+||+|||+++..++...  -.++.++++++.++-.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~--~~~g~~v~~~s~e~~~   39 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAG--LARGEPGLYVTLEESP   39 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCH
Confidence            47899999999999999988775  2456788899876543

A related protein is found in archaea.

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.91  E-value=0.0025  Score=67.84  Aligned_cols=38  Identities=26%  Similarity=0.284  Sum_probs=31.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +.|.-||+.||||+|||++|+.+|.+++.     +.+.++...
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~-----~~~~l~~~~  294 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQL-----PLLRLDVGK  294 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEEhHH
Confidence            56888999999999999999999999864     556666543

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.90  E-value=0.0014  Score=60.36  Aligned_cols=43  Identities=12%  Similarity=0.234  Sum_probs=35.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...++++.|+|||||||++..++....  ..+.++++|+++.|.
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~~~   52 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEGLS   52 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCC
Confidence            5678999999999999999999987752  345678999998743

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK13768 GTPase; Provisional

Probab=96.89  E-value=0.0012  Score=63.92  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=33.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.++++.|++||||||++..++..+  ...+.++.+|+.|.-
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l--~~~g~~v~~i~~D~~   41 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL--EEQGYDVAIVNLDPA   41 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH--HhcCCceEEEECCCc
Confidence            5689999999999999999999887  456778889887753

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=96.88  E-value=0.0025  Score=69.84  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=31.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .+|.+.||+||||||+++.|+++++|       .++|+|.+..
T Consensus       443 ~~i~i~g~~~~gks~~~~~l~~~~~~-------~~~~~~~~~~  478 (661)
T PRK11860        443 PVICIDGPTASGKGTVAARVAEALGY-------HYLDSGALYR  478 (661)
T ss_pred             ceEEeeCCCCCCHHHHHHHHHHHhCC-------eEecHHHhhh
Confidence            37888999999999999999999977       6898877663

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=96.87  E-value=0.0015  Score=66.86  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .-||++|.++++++.++..+...+..                      .+-|+.+|+.|++|+||+|+|..+|+.+-+
T Consensus        12 ~~~P~~~~~iiGq~~~~~~L~~~~~~----------------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc   67 (365)
T PRK07471         12 APHPRETTALFGHAAAEAALLDAYRS----------------------GRLHHAWLIGGPQGIGKATLAYRMARFLLA   67 (365)
T ss_pred             CCCCCchhhccChHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence            36899999999999999988876665                      567899999999999999999999999855

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.85  E-value=0.0032  Score=61.01  Aligned_cols=48  Identities=25%  Similarity=0.367  Sum_probs=39.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccC-------------------CCCCeEEEeCCccccch
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG-------------------AATNAVVVEADAFKETD  257 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~-------------------~~~~avvIdaDefRe~D  257 (400)
                      +-|+.+|+.||||+||||+|..||+.++.+.                   .+++++.+++.+-+..+
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~   88 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID   88 (325)
T ss_pred             CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc
Confidence            4677999999999999999999999997432                   24688888888877643

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.84  E-value=0.0017  Score=56.01  Aligned_cols=87  Identities=16%  Similarity=0.196  Sum_probs=47.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA  294 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~A  294 (400)
                      ++|.|+||+|||++++.+++.++.     +...+........    ..|.+.-..... .         ..+....+.++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~----~dl~g~~~~~~~-~---------~~~~~~~l~~a   62 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTE----EDLIGSYDPSNG-Q---------FEFKDGPLVRA   62 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTH----HHHHCEEET-TT-T---------TCEEE-CCCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecccccc----ccceeeeeeccc-c---------ccccccccccc
Confidence            689999999999999999999953     5656654443321    223221000000 0         00001112225


Q ss_pred             HhCCCcEEEECcCCCh-HHHHHHHHHH
Q 015774          295 LNEGRDVIMDGTLSWV-PFVEQTIAMA  320 (400)
Q Consensus       295 L~eG~dVIIDgT~~~~-~~re~~i~~a  320 (400)
                      +.+|.-+++|..+... .....+...+
T Consensus        63 ~~~~~il~lDEin~a~~~v~~~L~~ll   89 (139)
T PF07728_consen   63 MRKGGILVLDEINRAPPEVLESLLSLL   89 (139)
T ss_dssp             HHEEEEEEESSCGG--HHHHHTTHHHH
T ss_pred             ccceeEEEECCcccCCHHHHHHHHHHH
Confidence            5588999999877543 3333444444

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PLN02422 dephospho-CoA kinase

Probab=96.83  E-value=0.00099  Score=64.44  Aligned_cols=33  Identities=36%  Similarity=0.404  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.|+|++||||||+++.|+ ++|+       .++|+|.+-
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~-------~~idaD~~~   35 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGI-------PVVDADKVA   35 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCC-------eEEehhHHH
Confidence            68999999999999999999 5654       899988764

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.82  E-value=0.0035  Score=69.36  Aligned_cols=75  Identities=17%  Similarity=0.190  Sum_probs=50.0

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774          163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA  242 (400)
Q Consensus       163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~  242 (400)
                      .+-+|+++.+-...+..+.+.++-...  .      ..+...+  .-..|.-+++.|+||+||||+++.+++.++.    
T Consensus       173 ~~~~~~di~G~~~~~~~l~~~i~~~~~--~------~~~~~~~--gi~~~~giLL~GppGtGKT~laraia~~~~~----  238 (733)
T TIGR01243       173 PKVTYEDIGGLKEAKEKIREMVELPMK--H------PELFEHL--GIEPPKGVLLYGPPGTGKTLLAKAVANEAGA----  238 (733)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhh--C------HHHHHhc--CCCCCceEEEECCCCCChHHHHHHHHHHhCC----
Confidence            446788888888777777777663100  0      0000001  1256778999999999999999999999853    


Q ss_pred             CCeEEEeCCc
Q 015774          243 TNAVVVEADA  252 (400)
Q Consensus       243 ~~avvIdaDe  252 (400)
                       ..+.+++.+
T Consensus       239 -~~i~i~~~~  247 (733)
T TIGR01243       239 -YFISINGPE  247 (733)
T ss_pred             -eEEEEecHH
Confidence             556676443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.81  E-value=0.011  Score=59.70  Aligned_cols=126  Identities=21%  Similarity=0.251  Sum_probs=69.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH---HHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS---TDAA  287 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~---~~~a  287 (400)
                      +.-+||++||.||||||+...+....+-   .....+|.     -.||+ +.++...       .+-..+.++   +.--
T Consensus       124 ~~GLILVTGpTGSGKSTTlAamId~iN~---~~~~HIlT-----IEDPI-E~vh~sk-------kslI~QREvG~dT~sF  187 (353)
T COG2805         124 PRGLILVTGPTGSGKSTTLAAMIDYINK---HKAKHILT-----IEDPI-EYVHESK-------KSLINQREVGRDTLSF  187 (353)
T ss_pred             CCceEEEeCCCCCcHHHHHHHHHHHHhc---cCCcceEE-----ecCch-Hhhhcch-------HhhhhHHHhcccHHHH
Confidence            3449999999999999999999888742   12223332     13454 2332210       000000010   1111


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhhhhhhccCCeeeccCCchhhhhcccccccchh
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEED  356 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~~  356 (400)
                      ...+..||.+.=|||+-|-+....-..-.+..|+--|   -+++.- -..+.-..+++.-+-|++.++.
T Consensus       188 ~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGH---LV~~TL-HT~sA~~ti~RiidvFp~~ek~  252 (353)
T COG2805         188 ANALRAALREDPDVILVGEMRDLETIRLALTAAETGH---LVFGTL-HTNSAAKTIDRIIDVFPAEEKD  252 (353)
T ss_pred             HHHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCC---EEEEec-ccccHHHHHHHHHHhCChhhhH
Confidence            2356679999999999999998775544444443211   122211 1112234677777777775543

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.0015  Score=60.30  Aligned_cols=43  Identities=16%  Similarity=0.275  Sum_probs=36.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.-+|+|+|++||||||+|-+|.+.+  -+.+.-...+|+|.+|
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L--~qrgkl~Y~LDGDNvR   71 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQAL--LQRGKLTYILDGDNVR   71 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHH--HhcCceEEEecCcccc
Confidence            456799999999999999999999988  3456667899999988

>PLN02772 guanylate kinase

Probab=96.78  E-value=0.00083  Score=69.64  Aligned_cols=86  Identities=20%  Similarity=0.288  Sum_probs=50.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ  274 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg--~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~  274 (400)
                      ...+++++||+|+||||+++.|.+++.  +              +.++.++.+++.++|.       .+...|.   +..
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe-------~~i~~g~---FlE  203 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVME-------KEIKDGK---FLE  203 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHH-------HHHHhCc---cce
Confidence            456899999999999999999988652  1              1122233444333332       2222111   111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcC
Q 015774          275 TAELVHQSSTDAASSLLVTALNEGRDVIMDGTL  307 (400)
Q Consensus       275 aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~  307 (400)
                      .+ .+|...|....+.++.++++|+++|+|-..
T Consensus       204 ~~-e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~  235 (398)
T PLN02772        204 FA-SVHGNLYGTSIEAVEVVTDSGKRCILDIDV  235 (398)
T ss_pred             ee-eecCccccccHHHHHHHHHhCCcEEEeCCH
Confidence            11 123333444455677789999999999543

>PHA00729 NTP-binding motif containing protein

Probab=96.75  E-value=0.0011  Score=64.13  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=23.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..-|++.|+||+||||+|..|+.+++
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34789999999999999999999863

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0025  Score=66.22  Aligned_cols=61  Identities=21%  Similarity=0.319  Sum_probs=46.2

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCcccccccccccc-CCCCE-EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALS-ERSPV-LLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~-~~~P~-lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..+|.+|.+...+|+.+.+-|-             .++|.|--.. -+.|+ -+||.||||+|||-+|+++|.+.+
T Consensus       208 ~ikW~DIagl~~AK~lL~EAVv-------------lPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~  270 (491)
T KOG0738|consen  208 NIKWDDIAGLHEAKKLLKEAVV-------------LPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG  270 (491)
T ss_pred             CcChHhhcchHHHHHHHHHHHh-------------hhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence            4689999999988887665432             3455554433 24565 799999999999999999999974

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.74  E-value=0.0088  Score=56.88  Aligned_cols=26  Identities=31%  Similarity=0.680  Sum_probs=23.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+++|.|+||+||||+++.++..+
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l   67 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRL   67 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence            45588999999999999999999987

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.72  E-value=0.003  Score=67.83  Aligned_cols=70  Identities=19%  Similarity=0.247  Sum_probs=50.7

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHH
Q 015774          153 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDI  232 (400)
Q Consensus       153 ~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~L  232 (400)
                      .-...-++.|+|++-+++.-+.+--..+.+|..-..+.                .+.-...+.||+||+|+||||+++.|
T Consensus        67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~----------------~~~l~~~iLLltGPsGcGKSTtvkvL  130 (634)
T KOG1970|consen   67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEF----------------TPKLGSRILLLTGPSGCGKSTTVKVL  130 (634)
T ss_pred             cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHh----------------ccCCCceEEEEeCCCCCCchhHHHHH
Confidence            44467899999999988866655555555555521111                11234569999999999999999999


Q ss_pred             HHhccc
Q 015774          233 MKESFW  238 (400)
Q Consensus       233 A~~lg~  238 (400)
                      ++.+|.
T Consensus       131 skelg~  136 (634)
T KOG1970|consen  131 SKELGY  136 (634)
T ss_pred             HHhhCc
Confidence            999976

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.72  E-value=0.0016  Score=70.89  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..+.+|.|+|+|||||||+++.|+..+.      ++.+|.-|.|.
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp------~vgvIsmDdy~  101 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVISMDNYN  101 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCC------CcEEEEEccee
Confidence            4678999999999999999999998872      45788888885

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=96.72  E-value=0.0024  Score=63.28  Aligned_cols=51  Identities=20%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +|+++++++.+++.+...++.                      ++-|+++++.|++|.||||+|..+++.+.+
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~----------------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c   52 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIK----------------------NRFSHAHIIVGEDGIGKSLLAKEIALKILG   52 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHc----------------------CCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence            688999998888887777654                      567889999999999999999999998743

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0079  Score=61.93  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      -++|.=+||.||||+|||-+|+++|++..     ...+.+.+.+|-+     +.+.                 +..+++.
T Consensus       182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtFIrvvgSElVq-----KYiG-----------------EGaRlVR  234 (406)
T COG1222         182 IDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATFIRVVGSELVQ-----KYIG-----------------EGARLVR  234 (406)
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceEEEeccHHHHH-----HHhc-----------------cchHHHH
Confidence            37899999999999999999999999973     2344444333210     1111                 1134556


Q ss_pred             HHHHHHHhCCCcEEEE
Q 015774          289 SLLVTALNEGRDVIMD  304 (400)
Q Consensus       289 ~lie~AL~eG~dVIID  304 (400)
                      .+.+-|-..-=++|+-
T Consensus       235 elF~lArekaPsIIFi  250 (406)
T COG1222         235 ELFELAREKAPSIIFI  250 (406)
T ss_pred             HHHHHHhhcCCeEEEE
Confidence            6666677777777764

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.71  E-value=0.0015  Score=63.12  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       217 L~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +.|++||||||+++.+.+.+  +..+.++.+||-|=
T Consensus         1 ViGpaGSGKTT~~~~~~~~~--~~~~~~~~~vNLDP   34 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWL--ESNGRDVYIVNLDP   34 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHH--TTT-S-EEEEE--T
T ss_pred             CCCCCCCCHHHHHHHHHHHH--HhccCCceEEEcch
Confidence            58999999999999999988  56677888888663

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=96.69  E-value=0.0051  Score=59.94  Aligned_cols=93  Identities=20%  Similarity=0.178  Sum_probs=58.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccccchHHHHHHhcCCCCChhhH-hHHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKETDVIYRALSSKGHHDDMLQ-TAELVHQSSTDAASSLL  291 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefRe~D~irk~L~~~G~~~d~~~-aa~~v~~~~~~~ae~li  291 (400)
                      +++++|.|-|||||.|.+|...+-  +.+ +..+.|.-|+         .+ +.++...+.. ..+   ..+-....+.+
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~--~~~~K~~v~ii~de---------sl-g~~~ns~y~~s~~E---K~lRg~L~S~v   67 (281)
T KOG3062|consen    3 LVVICGLPCSGKSTRAVELREALK--ERGTKQSVRIIDDE---------SL-GIEKNSNYGDSQAE---KALRGKLRSAV   67 (281)
T ss_pred             eEEEeCCCCCCchhHHHHHHHHHH--hhcccceEEEechh---------hc-CCCCcccccccHHH---HHHHHHHHHHH
Confidence            789999999999999999999883  333 3255554332         12 1111111111 011   22223445567


Q ss_pred             HHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          292 VTALNEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       292 e~AL~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      ++.+..|.-||+|+-+.-.+||=++-=+++
T Consensus        68 ~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak   97 (281)
T KOG3062|consen   68 DRSLSKGDIVIVDSLNYIKGFRYELYCEAK   97 (281)
T ss_pred             HhhcccCcEEEEecccccccceeeeeeehh
Confidence            889999999999999888888765544443

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.68  E-value=0.0026  Score=59.56  Aligned_cols=42  Identities=12%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...++++.|+||+||||++..++...  ...+.++++++++.+
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e~~   62 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTEGL   62 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence            567899999999999999999999865  234568899999844

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.68  E-value=0.0017  Score=57.81  Aligned_cols=28  Identities=25%  Similarity=0.472  Sum_probs=25.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ...+|+|.|.+||||||+++.+++.+|+
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4568999999999999999999999976

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.68  E-value=0.0012  Score=70.57  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=50.8

Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHH
Q 015774          152 TKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKD  231 (400)
Q Consensus       152 ~~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~  231 (400)
                      ..+...+++.....+|+++.+-...+..+.+.++.-  +..      ..+....  .-+.|.-+||.||||+|||++++.
T Consensus       166 ~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp--~~~------~~l~~~~--gl~~p~GILLyGPPGTGKT~LAKA  235 (512)
T TIGR03689       166 AEVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELP--FLH------PELYREY--DLKPPKGVLLYGPPGCGKTLIAKA  235 (512)
T ss_pred             hHHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHH--hhC------HHHHHhc--cCCCCcceEEECCCCCcHHHHHHH
Confidence            345566677777788898887776666666666520  110      0010110  124567799999999999999999


Q ss_pred             HHHhcc
Q 015774          232 IMKESF  237 (400)
Q Consensus       232 LA~~lg  237 (400)
                      +++.++
T Consensus       236 lA~eL~  241 (512)
T TIGR03689       236 VANSLA  241 (512)
T ss_pred             HHHhhc
Confidence            999984

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.67  E-value=0.0026  Score=59.21  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +|+++|++||||||++..|+..+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999998887

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.65  E-value=0.0051  Score=64.59  Aligned_cols=70  Identities=20%  Similarity=0.237  Sum_probs=44.9

Q ss_pred             hhhhhHHHHHHHHHHH-HHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774          170 VTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (400)
Q Consensus       170 v~~~~~vkr~~~~lie-e~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI  248 (400)
                      |++.+.++++++.-+- .|+....         ...+. ..-.|.-|+|.||||+||||+++.|+..+++     +.+.+
T Consensus        14 IiGQ~eAkk~lsvAl~n~~~r~~~---------~~~~~-~e~~p~~ILLiGppG~GKT~lAraLA~~l~~-----~fi~v   78 (441)
T TIGR00390        14 IIGQDNAKKSVAIALRNRYRRSQL---------NEELK-DEVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKV   78 (441)
T ss_pred             ccCHHHHHHHHHHHHHhhhhhhcc---------ccccc-cccCCceEEEECCCCCCHHHHHHHHHHHhCC-----eEEEe
Confidence            6677777777765554 3333211         00111 1235677999999999999999999999954     45555


Q ss_pred             eCCccc
Q 015774          249 EADAFK  254 (400)
Q Consensus       249 daDefR  254 (400)
                      ++-.|.
T Consensus        79 dat~~~   84 (441)
T TIGR00390        79 EATKFT   84 (441)
T ss_pred             ecceee
Confidence            544453

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.65  E-value=0.0021  Score=63.26  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +|-|+|++||||||+++.|+..++-    .++.+|..|+|..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~----~~~~vi~~Dd~~~   38 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGS----DLVTVICLDDYHS   38 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCC----CceEEEECccccc
Confidence            4678999999999999999988731    2556888898864

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.62  E-value=0.0025  Score=55.00  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      |++.|.+|+||||++..++..+  .+.+.++.++|+|.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l--~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYL--AEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCc
Confidence            7899999999999999999887  45566789999986

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.008  Score=63.15  Aligned_cols=30  Identities=33%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -+.|..+|+.||||+|||.+|++++..+++
T Consensus       273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~  302 (494)
T COG0464         273 LRPPKGVLLYGPPGTGKTLLAKAVALESRS  302 (494)
T ss_pred             CCCCCeeEEECCCCCCHHHHHHHHHhhCCC
Confidence            367779999999999999999999998754

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.61  E-value=0.0031  Score=63.82  Aligned_cols=66  Identities=18%  Similarity=0.236  Sum_probs=42.4

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..+-.|+++.+-++.++.+.+.++-.  +..      ......+  .-..|.-+++.|+||+||||+++.+++.++
T Consensus       116 ~p~~~~~di~Gl~~~~~~l~~~i~~~--~~~------~~~~~~~--g~~~p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       116 RPNVSYEDIGGLEEQIREIREAVELP--LKH------PELFEEV--GIEPPKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             CCCCCHHHhCChHHHHHHHHHHHHHH--hcC------HHHHHhc--CCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            33456677777677666666666521  000      0000000  124677899999999999999999999985

Many proteins may score above the trusted cutoff because an internal

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=96.60  E-value=0.0018  Score=66.95  Aligned_cols=33  Identities=42%  Similarity=0.533  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|.|+|.+||||||+++.|++ +|+       .+||+|.+-
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G~-------~vidaD~i~   35 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LGA-------VVVDADVLA   35 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCC-------eEEehHHHH
Confidence            589999999999999999987 655       899999875

>PRK08116 hypothetical protein; Validated

Probab=96.60  E-value=0.018  Score=56.38  Aligned_cols=40  Identities=25%  Similarity=0.299  Sum_probs=31.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.-+++.|+||+|||.++..+++.+  ...+..+++++..+|
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~~~l  153 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNFPQL  153 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHH
Confidence            3468999999999999999999987  334567778876554

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.59  E-value=0.0042  Score=64.62  Aligned_cols=71  Identities=14%  Similarity=0.119  Sum_probs=46.6

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -+.+.+||+.++++++.+-.       +.+-           .++-+-+.  .....-.++-||||+||||+|+.|+...
T Consensus        13 PLA~rmRP~~lde~vGQ~HL-------lg~~-----------~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~   72 (436)
T COG2256          13 PLAERLRPKSLDEVVGQEHL-------LGEG-----------KPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTT   72 (436)
T ss_pred             ChHHHhCCCCHHHhcChHhh-------hCCC-----------chHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence            35678999999999987642       2110           01111111  2333456789999999999999999998


Q ss_pred             cccCCCCCeEEEeCCc
Q 015774          237 FWSGAATNAVVVEADA  252 (400)
Q Consensus       237 g~~~~~~~avvIdaDe  252 (400)
                      +.     ....+++=.
T Consensus        73 ~~-----~f~~~sAv~   83 (436)
T COG2256          73 NA-----AFEALSAVT   83 (436)
T ss_pred             CC-----ceEEecccc
Confidence            53     566666543

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.59  E-value=0.0053  Score=59.60  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -+++.|+||+||||+|+.|+..+|.     ..+.++.+.
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~   56 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDA   56 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCc
Confidence            4568999999999999999998854     677776543

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=96.58  E-value=0.0032  Score=64.16  Aligned_cols=56  Identities=14%  Similarity=0.157  Sum_probs=49.3

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +.+|..|.+++++..+.+.|...+..                      .+-|+.+|+.|++|+||||+|..+++.+.+
T Consensus        16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~----------------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         16 VPSPSENTRLFGHEEAEAFLAQAYRE----------------------GKLHHALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             CCCCCchhhccCcHHHHHHHHHHHHc----------------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            46888999999999998888877765                      567999999999999999999999999854

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0029  Score=70.20  Aligned_cols=75  Identities=24%  Similarity=0.259  Sum_probs=56.2

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      -.|++|.+=+++|+.+.+.|+=+|.      +..|.   .  ...+-|.=+||+||||+|||-+|+++|.+-|.     +
T Consensus       308 V~FkDVAG~deAK~El~E~V~fLKN------P~~Y~---~--lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-----P  371 (774)
T KOG0731|consen  308 VKFKDVAGVDEAKEELMEFVKFLKN------PEQYQ---E--LGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----P  371 (774)
T ss_pred             CccccccCcHHHHHHHHHHHHHhcC------HHHHH---H--cCCcCcCceEEECCCCCcHHHHHHHHhcccCC-----c
Confidence            5799999999999999998874322      11111   0  01467899999999999999999999998754     6


Q ss_pred             eEEEeCCcccc
Q 015774          245 AVVVEADAFKE  255 (400)
Q Consensus       245 avvIdaDefRe  255 (400)
                      .+-+++-+|-+
T Consensus       372 F~svSGSEFvE  382 (774)
T KOG0731|consen  372 FFSVSGSEFVE  382 (774)
T ss_pred             eeeechHHHHH
Confidence            67777777764

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.56  E-value=0.0034  Score=60.38  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=30.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|-+=||.||||||+++.||+++||       .++|+-.+.
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~-------~yldTGamY   39 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGF-------HYLDTGAMY   39 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCC-------CeecccHHH
Confidence            68899999999999999999999987       788755443

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=96.55  E-value=0.014  Score=55.07  Aligned_cols=25  Identities=16%  Similarity=0.389  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +|.+-|..||||||+++.|++.+++
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~   25 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGM   25 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999999854

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PLN02842 nucleotide kinase

Probab=96.55  E-value=0.013  Score=62.61  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=26.4

Q ss_pred             EEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          216 LMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       216 LL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +|.|+|||||||+++.|++.+++       .+|+++++
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~-------~hIs~gdL   31 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGL-------VHISTGDL   31 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCC-------CEEEccHH
Confidence            47899999999999999999955       78876653

>PRK04296 thymidine kinase; Provisional

Probab=96.55  E-value=0.0027  Score=58.74  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      .+++++|+||+||||++..++.++  ...+..++++.+
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k~   38 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFKP   38 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEec
Confidence            589999999999999999999987  344567777754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=96.55  E-value=0.002  Score=71.03  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.|.|+|||||||+++.||+.+||       .++++..+.
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~-------~~~~~g~~~   36 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGY-------AYLDTGAMY   36 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEeecCcEe
Confidence            6899999999999999999999976       677766655

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.55  E-value=0.011  Score=57.47  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=60.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCCh--hhHhHHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--MLQTAELVHQSSTDAASS  289 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d--~~~aa~~v~~~~~~~ae~  289 (400)
                      |+|.++..-=|+||||.+..|+..+  ..+|..+.+||+|-=+....|++.-...|..++  ..+.+..     ...++.
T Consensus         2 ~vItf~s~KGGaGKTT~~~~LAs~l--a~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e-----~~~l~~   74 (231)
T PF07015_consen    2 PVITFASSKGGAGKTTAAMALASEL--AARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADE-----LTILED   74 (231)
T ss_pred             CeEEEecCCCCCcHHHHHHHHHHHH--HHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccc-----hhhHHH
Confidence            7788999999999999999999998  567889999999998865555432222221111  0011111     123344


Q ss_pred             HHHHHHhCCCcEEEECcCCChH
Q 015774          290 LLVTALNEGRDVIMDGTLSWVP  311 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~  311 (400)
                      ..+.+-..|+++||-+|.+...
T Consensus        75 ~~e~a~~~~~d~VlvDleG~as   96 (231)
T PF07015_consen   75 AYEAAEASGFDFVLVDLEGGAS   96 (231)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCc
Confidence            5555666788877777765444

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.55  E-value=0.02  Score=64.03  Aligned_cols=71  Identities=20%  Similarity=0.280  Sum_probs=48.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774          169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV  247 (400)
Q Consensus       169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv  247 (400)
                      +|++.+.+...++..+..++.          .+    . ....|. .+++.||||+|||++|+.||+.++.     ..+.
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~----------gl----~-~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~  518 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRA----------GL----G-HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLR  518 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhc----------cc----c-CCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEE
Confidence            456666666666666654222          11    0 123343 6899999999999999999999853     6788


Q ss_pred             EeCCccccchHH
Q 015774          248 VEADAFKETDVI  259 (400)
Q Consensus       248 IdaDefRe~D~i  259 (400)
                      +|..+|.+.+..
T Consensus       519 id~se~~~~~~~  530 (758)
T PRK11034        519 FDMSEYMERHTV  530 (758)
T ss_pred             eechhhcccccH
Confidence            888877654443

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.013  Score=64.01  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=33.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -.+|.-+|+-||||+|||.+|+++|.++|.     +.+-|++-++-
T Consensus       220 v~PprGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~isApeiv  260 (802)
T KOG0733|consen  220 VRPPRGVLLHGPPGCGKTSLANAIAGELGV-----PFLSISAPEIV  260 (802)
T ss_pred             CCCCCceeeeCCCCccHHHHHHHHhhhcCC-----ceEeecchhhh
Confidence            368889999999999999999999999965     55556654443

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.53  E-value=0.011  Score=55.29  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=23.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+++++|.||+||||+.+.+.+.+
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            6899999999999999999999887

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.0032  Score=68.36  Aligned_cols=76  Identities=25%  Similarity=0.274  Sum_probs=58.6

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      .-+|.+|.+.+++|+.++++|+-++.-.      +|.-     ...+-|.-+++.||||+|||.+|+++|.+-+.     
T Consensus       146 ~v~F~DVAG~dEakeel~EiVdfLk~p~------ky~~-----lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V-----  209 (596)
T COG0465         146 KVTFADVAGVDEAKEELSELVDFLKNPK------KYQA-----LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-----  209 (596)
T ss_pred             CcChhhhcCcHHHHHHHHHHHHHHhCch------hhHh-----cccccccceeEecCCCCCcHHHHHHHhcccCC-----
Confidence            3689999999999999999998754322      1210     11367999999999999999999999988743     


Q ss_pred             CeEEEeCCcccc
Q 015774          244 NAVVVEADAFKE  255 (400)
Q Consensus       244 ~avvIdaDefRe  255 (400)
                      +...+++-+|=+
T Consensus       210 PFf~iSGS~FVe  221 (596)
T COG0465         210 PFFSISGSDFVE  221 (596)
T ss_pred             Cceeccchhhhh
Confidence            667777777753

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.53  E-value=0.0045  Score=65.08  Aligned_cols=79  Identities=13%  Similarity=0.125  Sum_probs=49.3

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc
Q 015774          160 AATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS  239 (400)
Q Consensus       160 ~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~  239 (400)
                      +......|.+|-+-+..+..+.+.++-.   +..     ..+...+  .-..|.-++|.|+||+|||++|+.++.+++. 
T Consensus       175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lp---l~~-----p~~~~~~--gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-  243 (438)
T PTZ00361        175 DKAPLESYADIGGLEQQIQEIKEAVELP---LTH-----PELYDDI--GIKPPKGVILYGPPGTGKTLLAKAVANETSA-  243 (438)
T ss_pred             ccCCCCCHHHhcCHHHHHHHHHHHHHhh---hhC-----HHHHHhc--CCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-
Confidence            3444467888877666666666666531   100     0000001  1256778999999999999999999999843 


Q ss_pred             CCCCCeEEEeCCcc
Q 015774          240 GAATNAVVVEADAF  253 (400)
Q Consensus       240 ~~~~~avvIdaDef  253 (400)
                          ..+.+++.++
T Consensus       244 ----~fi~V~~seL  253 (438)
T PTZ00361        244 ----TFLRVVGSEL  253 (438)
T ss_pred             ----CEEEEecchh
Confidence                4555554443

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.52  E-value=0.013  Score=70.61  Aligned_cols=121  Identities=17%  Similarity=0.248  Sum_probs=80.6

Q ss_pred             hhhhhccccccchhhhhhhcCcchhhhhhHH--HHHHHHhhh--hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccc-
Q 015774          125 ILSYFTFHWSHASLMISQVLSVESEKKTKLK--DFIMAATRK--QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCT-  199 (400)
Q Consensus       125 ~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~r~--~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~-  199 (400)
                      .++.+.+.-+|.+.|...++|.....|.++-  .-+++-+++  ..++-.+-.+--+++|......   |..++-+ |. 
T Consensus      1534 ~I~~~~~~lt~~~~l~~n~~gyq~~eqpG~~YLRyL~d~~qk~LmnYefn~~~laEr~IflA~yq~---It~Sq~~-~~~ 1609 (2281)
T CHL00206       1534 RIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQT---ITYSQTS-CGA 1609 (2281)
T ss_pred             hhhhhhhccccccccccccccccccccccHHHHHHHHHHHhcccccccccccchHhhHhHHHHHhH---Hhccccc-ccc
Confidence            4678899999999999999999877665431  122333333  2333344456567777777776   5432211 21 


Q ss_pred             -ccc-----ccc--cccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          200 -DVM-----VPA--ALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       200 -~v~-----~pl--~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                       .+.     .|+  ......|.-|||.||||+|||.+|++||.+.+.     +.+.|++++|-
T Consensus      1610 n~~~~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~V-----PFIsISgs~fl 1667 (2281)
T CHL00206       1610 NSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYV-----PFITVFLNKFL 1667 (2281)
T ss_pred             ccccCcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-----ceEEEEHHHHh
Confidence             111     122  222367889999999999999999999999854     77788877775

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=96.51  E-value=0.011  Score=56.89  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=24.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ..+|.++|+-|+||||+|+.|+++++.
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~   30 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGF   30 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCC
Confidence            458999999999999999999999964

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.51  E-value=0.0026  Score=64.57  Aligned_cols=34  Identities=32%  Similarity=0.502  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -|+|.|+||+||||+++.||+.++|     ..+.|+.+.
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~-----~~~rV~~~~   99 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNW-----PCVRVNLDS   99 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCC-----CeEEEEecC
Confidence            3899999999999999999999987     555665443

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.018  Score=62.83  Aligned_cols=67  Identities=25%  Similarity=0.292  Sum_probs=48.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ..|.-|||+||||+|||-+|+++|++.|.     |.+.|-+-+          |..           ..+ .++.+.+..
T Consensus       543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~-----NFisVKGPE----------LlN-----------kYV-GESErAVR~  595 (802)
T KOG0733|consen  543 DAPSGVLLCGPPGCGKTLLAKAVANEAGA-----NFISVKGPE----------LLN-----------KYV-GESERAVRQ  595 (802)
T ss_pred             CCCCceEEeCCCCccHHHHHHHHhhhccC-----ceEeecCHH----------HHH-----------HHh-hhHHHHHHH
Confidence            56899999999999999999999999854     655553211          111           112 345567778


Q ss_pred             HHHHHHhCCCcEEE
Q 015774          290 LLVTALNEGRDVIM  303 (400)
Q Consensus       290 lie~AL~eG~dVII  303 (400)
                      +..+|.+.---||+
T Consensus       596 vFqRAR~saPCVIF  609 (802)
T KOG0733|consen  596 VFQRARASAPCVIF  609 (802)
T ss_pred             HHHHhhcCCCeEEE
Confidence            88889888877776

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.50  E-value=0.003  Score=57.94  Aligned_cols=90  Identities=19%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ....++++|++||||||+++.|+..+.  . ..+.+.++ .+++.......-++...  ........       ......
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~--~-~~~~i~ied~~E~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~   91 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP--P-DERIITIEDTAELQLPHPNWVRLVTR--PGNVEGSG-------EVTMAD   91 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC--C-CCCEEEECCccccCCCCCCEEEEEEe--cCCCCCCC-------ccCHHH
Confidence            467899999999999999999998763  2 23444442 22222100000000000  00000000       011223


Q ss_pred             HHHHHHhCCCcEEEECcCCChHH
Q 015774          290 LLVTALNEGRDVIMDGTLSWVPF  312 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~~  312 (400)
                      ++..++..+-|+|+-|....+.-
T Consensus        92 ~l~~~lR~~pd~i~igEir~~ea  114 (186)
T cd01130          92 LLRSALRMRPDRIIVGEVRGGEA  114 (186)
T ss_pred             HHHHHhccCCCEEEEEccCcHHH
Confidence            55668888899999999988653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.0066  Score=63.79  Aligned_cols=86  Identities=16%  Similarity=0.172  Sum_probs=53.7

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      ..|+-++-|++.|+.+..=+.+   ..+     .......+-  ..=..=.||-||||+||||++.++|..+++     +
T Consensus       198 stF~TlaMd~~~K~~I~~Dl~~---F~k-----~k~~YkrvG--kawKRGYLLYGPPGTGKSS~IaAmAn~L~y-----d  262 (457)
T KOG0743|consen  198 STFETLAMDPDLKERIIDDLDD---FIK-----GKDFYKRVG--KAWKRGYLLYGPPGTGKSSFIAAMANYLNY-----D  262 (457)
T ss_pred             CCccccccChhHHHHHHHHHHH---HHh-----cchHHHhcC--cchhccceeeCCCCCCHHHHHHHHHhhcCC-----c
Confidence            4566666666666654433333   332     112222221  111236899999999999999999999976     7


Q ss_pred             eEEEeCCccccchHHHHHHhc
Q 015774          245 AVVVEADAFKETDVIYRALSS  265 (400)
Q Consensus       245 avvIdaDefRe~D~irk~L~~  265 (400)
                      +.-++--+.+..+.+++-|..
T Consensus       263 IydLeLt~v~~n~dLr~LL~~  283 (457)
T KOG0743|consen  263 IYDLELTEVKLDSDLRHLLLA  283 (457)
T ss_pred             eEEeeeccccCcHHHHHHHHh
Confidence            777776666655566665543

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.017  Score=59.10  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=25.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -..+||+.||||+||||+.++||+.+.+
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLSI  203 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLSI  203 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence            4569999999999999999999999865

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.46  E-value=0.0027  Score=56.82  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +.+.|++||||||++..++..+  ...+.++.+++.|.
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~--~~~g~~v~ii~~D~   37 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITAL--RARGKRVAVLAIDP   37 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEeCC
Confidence            6788999999999999999887  44566788888884

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=96.45  E-value=0.011  Score=61.85  Aligned_cols=27  Identities=30%  Similarity=0.370  Sum_probs=24.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++..++++.|.+||||||+++.|..-+
T Consensus       347 krGelvFliG~NGsGKST~~~LLtGL~  373 (546)
T COG4615         347 KRGELVFLIGGNGSGKSTLAMLLTGLY  373 (546)
T ss_pred             ecCcEEEEECCCCCcHHHHHHHHhccc
Confidence            567799999999999999999998776

>PF13173 AAA_14: AAA domain

Probab=96.45  E-value=0.0035  Score=53.97  Aligned_cols=39  Identities=26%  Similarity=0.507  Sum_probs=32.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .++++.|+.|+||||+++.+++.+.   ...+.+.++.|+.+
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~   41 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR   41 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH
Confidence            5789999999999999999999873   23467888877654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.42  E-value=0.0031  Score=65.34  Aligned_cols=41  Identities=27%  Similarity=0.387  Sum_probs=35.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -+.|.+++|-||||+|||.+++.+++++|.     +.+.+++-++-
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~-----~~i~vsa~eL~  185 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGI-----EPIVMSAGELE  185 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-----CeEEEEHHHhh
Confidence            478999999999999999999999999965     77888765443

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.41  E-value=0.0024  Score=56.55  Aligned_cols=43  Identities=23%  Similarity=0.391  Sum_probs=25.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ...|.+++|.|++|+||||+.+++...+.-  .+.-.+.++.+..
T Consensus        21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~--~~~~~~~~~~~~~   63 (185)
T PF13191_consen   21 SGSPRNLLLTGESGSGKTSLLRALLDRLAE--RGGYVISINCDDS   63 (185)
T ss_dssp             S-----EEE-B-TTSSHHHHHHHHHHHHHH--HT--EEEEEEETT
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEEEecc
Confidence            467789999999999999999999888732  1112455665555

>COG4240 Predicted kinase [General function prediction only]

Probab=96.41  E-value=0.0089  Score=58.53  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=41.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccccchHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKETDVIYRALSS  265 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefRe~D~irk~L~~  265 (400)
                      ...|.++.++|+.||||||++..|-..+-  ..+ ....-++.|+|.-.+..+-.|..
T Consensus        47 ~grPli~gisGpQGSGKStls~~i~~~L~--~kg~ert~~lSLDDlYlthadrl~La~  102 (300)
T COG4240          47 RGRPLIVGISGPQGSGKSTLSALIVRLLA--AKGLERTATLSLDDLYLTHADRLRLAR  102 (300)
T ss_pred             cCCceEEEeecCCCCchhhHHHHHHHHHH--HhcccceEEeehhhhhcchHHHHHHHH
Confidence            35699999999999999999998877662  222 36788999999865554444433

>TIGR00101 ureG urease accessory protein UreG

Probab=96.41  E-value=0.0065  Score=56.92  Aligned_cols=40  Identities=18%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |..|.++|++||||||+.+.+...+..   ..+..++..|...
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~---~~~~~~~~~d~~~   40 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQ---KYQLAVITNDIYT   40 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCc---CCcEEEEeCCcCC
Confidence            678999999999999999999988631   2356667777655

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.40  E-value=0.0034  Score=49.01  Aligned_cols=34  Identities=15%  Similarity=0.405  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      +++++|.+|+||||++..|+..+  .+.+.++..++
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l--~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAAL--AKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEC
Confidence            36888999999999999999998  33455666665

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF05729 NACHT: NACHT domain

Probab=96.39  E-value=0.0028  Score=54.79  Aligned_cols=23  Identities=35%  Similarity=0.664  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +++|.|.||+||||++..++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            68999999999999999999887

>TIGR00763 lon ATP-dependent protease La

Probab=96.38  E-value=0.026  Score=63.13  Aligned_cols=36  Identities=25%  Similarity=0.239  Sum_probs=29.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ..+++.||||+||||+|+.|++.++.     +.+.++...+
T Consensus       348 ~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~  383 (775)
T TIGR00763       348 PILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGV  383 (775)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCc
Confidence            37899999999999999999999964     6677765544

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.38  E-value=0.017  Score=57.93  Aligned_cols=93  Identities=22%  Similarity=0.341  Sum_probs=54.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC------------ccccchHHHHHHhcC---CCCChhh
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD------------AFKETDVIYRALSSK---GHHDDML  273 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD------------efRe~D~irk~L~~~---G~~~d~~  273 (400)
                      ..+|.+|++.|--||||||+.+.|-..+.  .......+|+.|            ++|. -+-|+...+.   | |+...
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRD-tVkYkEvMkqY~LG-PNGgI   91 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRD-TVKYKEVMKQYQLG-PNGGI   91 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhh-hhhHHHHHHHhCCC-CCcch
Confidence            47899999999999999999999988873  344445677755            2221 1223333221   2 22223


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhCCCcEEEEC
Q 015774          274 QTAELVHQSSTDAASSLLVTALNEGRDVIMDG  305 (400)
Q Consensus       274 ~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDg  305 (400)
                      -++-..+..-...+..+++++..+-..||||+
T Consensus        92 ~TsLNLF~tk~dqv~~~iek~~~~~~~~liDT  123 (366)
T KOG1532|consen   92 VTSLNLFATKFDQVIELIEKRAEEFDYVLIDT  123 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccCEEEEcC
Confidence            33333322223344457777766655666664

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.37  E-value=0.012  Score=58.98  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=33.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ....++-|.|+|||||||++..+...+.  . ..++.+|..|.--
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~--~-~~~~~VI~gD~~t  143 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLK--D-SVPCAVIEGDQQT  143 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhc--c-CCCEEEECCCcCc
Confidence            4567899999999999999999999872  1 2477888888644

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.36  E-value=0.0051  Score=65.01  Aligned_cols=43  Identities=14%  Similarity=0.356  Sum_probs=35.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+..++++.|+||+||||++.+++...  -.++..+++++.++-.
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eEs~  303 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEESR  303 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCCH
Confidence            567899999999999999999998875  2346678999988755

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.023  Score=57.64  Aligned_cols=115  Identities=22%  Similarity=0.302  Sum_probs=72.8

Q ss_pred             hhhhHHHHHHHHh-hh---hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCcccccccccccc-CCCCE-EEEEEcCCCC
Q 015774          150 KKTKLKDFIMAAT-RK---QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALS-ERSPV-LLLMGGGMGA  223 (400)
Q Consensus       150 ~~~~~~~~~~~~~-r~---~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~-~~~P~-lILL~G~PGS  223 (400)
                      .++||++-+..|. ++   -+|.+|.+=+..|+.+.+-|-     +        ++--|-... .+.|+ -|||.||||+
T Consensus       111 e~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVI-----L--------PIKFPqlFtGkR~PwrgiLLyGPPGT  177 (439)
T KOG0739|consen  111 EKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVI-----L--------PIKFPQLFTGKRKPWRGILLYGPPGT  177 (439)
T ss_pred             hHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhhee-----e--------cccchhhhcCCCCcceeEEEeCCCCC
Confidence            3778888777664 33   588999988888877665431     1        121222222 35555 7999999999


Q ss_pred             cHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 015774          224 GKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIM  303 (400)
Q Consensus       224 GKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVII  303 (400)
                      |||.+|+++|-+-       |..+++..   ..|-+-+            +.     .++..++..+.+-|..+.-++|+
T Consensus       178 GKSYLAKAVATEA-------nSTFFSvS---SSDLvSK------------Wm-----GESEkLVknLFemARe~kPSIIF  230 (439)
T KOG0739|consen  178 GKSYLAKAVATEA-------NSTFFSVS---SSDLVSK------------WM-----GESEKLVKNLFEMARENKPSIIF  230 (439)
T ss_pred             cHHHHHHHHHhhc-------CCceEEee---hHHHHHH------------Hh-----ccHHHHHHHHHHHHHhcCCcEEE
Confidence            9999999999885       23444311   1111101            11     23345677788888888888887


Q ss_pred             E
Q 015774          304 D  304 (400)
Q Consensus       304 D  304 (400)
                      -
T Consensus       231 i  231 (439)
T KOG0739|consen  231 I  231 (439)
T ss_pred             e
Confidence            5

>PF13245 AAA_19: Part of AAA domain

Probab=96.35  E-value=0.0034  Score=50.42  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=24.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc--ccCCCCCeEEEe
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF--WSGAATNAVVVE  249 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg--~~~~~~~avvId  249 (400)
                      +.+++|.|+|||||||++..++..+-  +...+.+++++.
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a   49 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA   49 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            44778899999999966666555542  111134566664

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.34  E-value=0.0043  Score=61.06  Aligned_cols=52  Identities=19%  Similarity=0.168  Sum_probs=39.7

Q ss_pred             ccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          201 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       201 v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +...+..+-+...++-+.|||||||||+.+.|+.-+..   ..+.+.+++-.+..
T Consensus        17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g~~i~~   68 (258)
T COG1120          17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIAS   68 (258)
T ss_pred             EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCCchhh
Confidence            33444444466789999999999999999999997732   35668898877764

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.33  E-value=0.0047  Score=60.02  Aligned_cols=41  Identities=12%  Similarity=0.220  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +...+++|+|+||+||||++.+++...  -..+..+++++.++
T Consensus        34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee   74 (259)
T TIGR03878        34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES   74 (259)
T ss_pred             ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence            567899999999999999999987763  23456888998774

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=96.33  E-value=0.0031  Score=71.21  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|.+.|+|||||||+++.||+.+++       .+|+++.|.
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~~-------~~~~~g~~y   69 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLGA-------QCLNTGSFY   69 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC-------cEEeHHHHH
Confidence            58999999999999999999999976       789877665

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.31  E-value=0.0041  Score=56.16  Aligned_cols=36  Identities=19%  Similarity=0.377  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      +|.++|++||||||++..|...+  +..|..+.+|..|
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l--~~~G~~V~viK~~   36 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL--KARGYRVATIKHD   36 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecc
Confidence            47889999999999999999987  4445567777544

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.30  E-value=0.0081  Score=55.96  Aligned_cols=47  Identities=21%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV  258 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~  258 (400)
                      ...|.+|.++|++||||||+...++..++.   +..+.++..|.....|.
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~---~~~v~v~~~~~~~~~D~   65 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD---EVKIAVIEGDVITKFDA   65 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhc---CCeEEEEECCCCCcccH
Confidence            346889999999999999999999988632   23556777776544444

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.30  E-value=0.0044  Score=54.55  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=25.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +...+|+|.|..||||||+++.+++.+|.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            35689999999999999999999999976

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=96.30  E-value=0.012  Score=58.64  Aligned_cols=46  Identities=26%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC----CCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA----TNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~----~~avvIdaDefRe  255 (400)
                      ..|..+++.|+||+||||+++.+++.+.-....    -.++.+++.....
T Consensus        38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~   87 (365)
T TIGR02928        38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT   87 (365)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence            355678999999999999999999876210000    1456777766553

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK06851 hypothetical protein; Provisional

Probab=96.29  E-value=0.0067  Score=62.48  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -..+++|.|+||+||||+++.++...
T Consensus       213 ~~~~~~i~G~pG~GKstl~~~i~~~a  238 (367)
T PRK06851        213 VKNRYFLKGRPGTGKSTMLKKIAKAA  238 (367)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHHH
Confidence            45789999999999999999999987

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.29  E-value=0.0052  Score=57.70  Aligned_cols=43  Identities=9%  Similarity=0.140  Sum_probs=33.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..+++|+|+||+||||++..++...- ...+.++++++.+.=
T Consensus        11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~~   53 (242)
T cd00984          11 QPGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEMS   53 (242)
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCCC
Confidence            4667999999999999999999887652 122568899987763

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.29  E-value=0.043  Score=52.32  Aligned_cols=94  Identities=18%  Similarity=0.225  Sum_probs=54.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAAS  288 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae  288 (400)
                      .+.+|.+-|.=||||||.++.|++.+  .+.+-++++.. +-.-.-...+++.+......-++ .+....+... ..-++
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l--~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~-~~e~lLfaadR~~h~~   78 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERL--EERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSP-KAEALLFAADRAQHLE   78 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCH-HHHHHHHHHHHHHHHH
Confidence            46799999999999999999999998  44444444432 11100012333434331000111 2222222222 34466


Q ss_pred             HHHHHHHhCCCcEEEECcC
Q 015774          289 SLLVTALNEGRDVIMDGTL  307 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~  307 (400)
                      ..+..++++|.-||+|--.
T Consensus        79 ~~i~pal~~g~vVI~DRy~   97 (208)
T COG0125          79 EVIKPALKEGKVVICDRYV   97 (208)
T ss_pred             HHHHHhhcCCCEEEECCcc
Confidence            7888899999999998544

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.011  Score=64.56  Aligned_cols=67  Identities=22%  Similarity=0.277  Sum_probs=47.1

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCcccccccccc---ccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAA---LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA  241 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~---~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~  241 (400)
                      -.|+++-+.+.+|+.++..|+-             ++-.|..   ....+|.-||+.||||+||||+|+.||.+.+.   
T Consensus       431 v~W~dIGGlE~lK~elq~~V~~-------------p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~---  494 (693)
T KOG0730|consen  431 VSWDDIGGLEELKRELQQAVEW-------------PLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM---  494 (693)
T ss_pred             CChhhccCHHHHHHHHHHHHhh-------------hhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC---
Confidence            4567777777888888777662             0001111   11368999999999999999999999999854   


Q ss_pred             CCCeEEEe
Q 015774          242 ATNAVVVE  249 (400)
Q Consensus       242 ~~~avvId  249 (400)
                        |.+-|.
T Consensus       495 --nFlsvk  500 (693)
T KOG0730|consen  495 --NFLSVK  500 (693)
T ss_pred             --Ceeecc
Confidence              555554

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.015  Score=62.57  Aligned_cols=177  Identities=19%  Similarity=0.196  Sum_probs=99.9

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      .-+|++|-+=++.|..+.+.||=+|.      +.++.     +...+-|.-||++||||.|||-+|+++|.+-+     .
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVefLkd------P~kft-----rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----V  363 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEFLKD------PTKFT-----RLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----V  363 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHHhcC------cHHhh-----hccCcCCCceEEeCCCCCchhHHHHHhhcccC-----C
Confidence            35799998888899888888775322      11111     01157899999999999999999999998864     3


Q ss_pred             CeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcC---------CChHHHH
Q 015774          244 NAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTL---------SWVPFVE  314 (400)
Q Consensus       244 ~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~---------~~~~~re  314 (400)
                      +..+-++.+|-+      .+.+.|                .+.+..+...|-+.---||+-+-.         ....+..
T Consensus       364 PFF~~sGSEFdE------m~VGvG----------------ArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~k  421 (752)
T KOG0734|consen  364 PFFYASGSEFDE------MFVGVG----------------ARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAK  421 (752)
T ss_pred             CeEeccccchhh------hhhccc----------------HHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHH
Confidence            556666666542      122211                123444666666666666654321         1122334


Q ss_pred             HHHHH-HHhhhhhhhhccCCeeeccCCchhhhhcccccccchhhhhhhcccccCCCCcEEEEEEEEecchhHHHHHHHHH
Q 015774          315 QTIAM-ARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRYA  393 (400)
Q Consensus       315 ~~i~~-arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~~~~~~~~~~~~~~~py~~~~~~v~~~~~~av~r~~~r~  393 (400)
                      +++.. +-+.  -.|....|.-+  .+  .-++=|..+.             ..-+|=|.-..-+|--|.+.=+.-|.-+
T Consensus       422 qTlNQLLvEm--DGF~qNeGiIv--ig--ATNfpe~LD~-------------AL~RPGRFD~~v~Vp~PDv~GR~eIL~~  482 (752)
T KOG0734|consen  422 QTLNQLLVEM--DGFKQNEGIIV--IG--ATNFPEALDK-------------ALTRPGRFDRHVTVPLPDVRGRTEILKL  482 (752)
T ss_pred             HHHHHHHHHh--cCcCcCCceEE--Ee--ccCChhhhhH-------------HhcCCCccceeEecCCCCcccHHHHHHH
Confidence            43332 2221  12222223221  00  0111111111             2556777777777777888777777777


Q ss_pred             HHhc
Q 015774          394 YQYH  397 (400)
Q Consensus       394 ~~t~  397 (400)
                      -.++
T Consensus       483 yl~k  486 (752)
T KOG0734|consen  483 YLSK  486 (752)
T ss_pred             HHhc
Confidence            6654

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.27  E-value=0.0063  Score=59.52  Aligned_cols=91  Identities=22%  Similarity=0.269  Sum_probs=51.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL  291 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~li  291 (400)
                      -+|+++|++||||||+...+.....  ....+++.|+ +.++.        +.+.... .......       ......+
T Consensus        81 GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiEdp~E~~--------~~~~~q~-~v~~~~~-------~~~~~~l  142 (264)
T cd01129          81 GIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVEDPVEYQ--------IPGINQV-QVNEKAG-------LTFARGL  142 (264)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEECCCceec--------CCCceEE-EeCCcCC-------cCHHHHH
Confidence            4899999999999999999987762  2223444442 22222        1110000 0000000       0122355


Q ss_pred             HHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          292 VTALNEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       292 e~AL~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      ..++..+-|+|+-|-...+......++.+.
T Consensus       143 ~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~  172 (264)
T cd01129         143 RAILRQDPDIIMVGEIRDAETAEIAVQAAL  172 (264)
T ss_pred             HHHhccCCCEEEeccCCCHHHHHHHHHHHH
Confidence            567788888888888887765555555543

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.27  E-value=0.0058  Score=58.22  Aligned_cols=43  Identities=19%  Similarity=0.318  Sum_probs=34.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...++++.|+|||||||++..++...  -.++..+++++.++-.
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee~~   61 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEEHP   61 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeCCH
Confidence            567899999999999999999877653  1245678899887643

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=96.26  E-value=0.013  Score=52.61  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=34.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.++++-+|+||||++..||..+  ...|..+++||.|--+
T Consensus         2 i~v~s~kgG~GKTt~a~~LA~~l--a~~g~~vllvD~D~q~   40 (169)
T cd02037           2 IAVMSGKGGVGKSTVAVNLALAL--AKLGYKVGLLDADIYG   40 (169)
T ss_pred             EEEecCCCcCChhHHHHHHHHHH--HHcCCcEEEEeCCCCC
Confidence            56889999999999999999987  5567899999999765

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.22  E-value=0.0068  Score=64.96  Aligned_cols=60  Identities=17%  Similarity=0.350  Sum_probs=43.3

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHH
Q 015774          153 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDI  232 (400)
Q Consensus       153 ~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~L  232 (400)
                      +|..-+.+.+|++.|+.+++.......+..   .   +.                 ...|.-+++.|+||+||||+|+.+
T Consensus        50 ~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~---a---l~-----------------~~~~~~vLi~Ge~GtGKt~lAr~i  106 (531)
T TIGR02902        50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKA---A---LC-----------------GPNPQHVIIYGPPGVGKTAAARLV  106 (531)
T ss_pred             hhcchHHHhhCcCCHHHeeCcHHHHHHHHH---H---Hh-----------------CCCCceEEEECCCCCCHHHHHHHH
Confidence            445578899999999999887765444331   1   11                 123445688999999999999999


Q ss_pred             HHh
Q 015774          233 MKE  235 (400)
Q Consensus       233 A~~  235 (400)
                      .+.
T Consensus       107 ~~~  109 (531)
T TIGR02902       107 LEE  109 (531)
T ss_pred             HHH
Confidence            764

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK05642 DNA replication initiation factor; Validated

Probab=96.21  E-value=0.017  Score=55.24  Aligned_cols=41  Identities=20%  Similarity=0.254  Sum_probs=33.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ..+++.|++|+|||.++..+++.+  ...+..+++++.++|-.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~~~~   86 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAELLD   86 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHHHHh
Confidence            457899999999999999998876  23456889999888753

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.007  Score=59.04  Aligned_cols=54  Identities=20%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL  263 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L  263 (400)
                      -+...++.+.|||||||||++..|+...+++ .-.+-+.+++.++-+..+.-++-
T Consensus        27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~~l~~~ERAr   80 (251)
T COG0396          27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDILELSPDERAR   80 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccccCCHhHHHh
Confidence            4577899999999999999999999887552 22345788888888766544443

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.01  Score=61.15  Aligned_cols=59  Identities=27%  Similarity=0.327  Sum_probs=40.6

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccc----cCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAAL----SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~----~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +|.++.+=+.++..+.++|=     +        ++.+|-..    .-++|.-||+-||||+|||-+|+++|++.|
T Consensus        90 ~f~DIggLe~v~~~L~e~Vi-----l--------Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag  152 (386)
T KOG0737|consen   90 SFDDIGGLEEVKDALQELVI-----L--------PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG  152 (386)
T ss_pred             ehhhccchHHHHHHHHHHHh-----h--------cccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC
Confidence            67777776666666666543     1        11111111    125788999999999999999999999984

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.18  E-value=0.0039  Score=58.41  Aligned_cols=43  Identities=16%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDefR  254 (400)
                      +.+.++++.|+||+|||+++.+++...  -.+ +.++++++.++=.
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~--~~~~ge~vlyvs~ee~~   60 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNG--LKNFGEKVLYVSFEEPP   60 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH--HHHHT--EEEEESSS-H
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHh--hhhcCCcEEEEEecCCH
Confidence            567899999999999999999977553  123 5688999987644

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=96.17  E-value=0.025  Score=55.14  Aligned_cols=97  Identities=20%  Similarity=0.286  Sum_probs=56.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL  291 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~li  291 (400)
                      +.+++++|--|+||||++..|+..+  ...+.+++.||+|--...-.-+..+.... . +.....+ ..   ......++
T Consensus         3 ~i~~i~~~KGGvGKSt~a~~la~~l--~~~g~~vl~iD~D~~n~~~~~~~~l~~~~-~-~i~~~~~-i~---~r~fD~Lv   74 (241)
T PRK13886          3 KIHMVLQGKGGVGKSFIAATIAQYK--ASKGQKPLCIDTDPVNATFEGYKALNVRR-L-NIMDGDE-IN---TRNFDALV   74 (241)
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHH--HhCCCCEEEEECCCCCchhhhHHhcCCcc-e-ecccCCc-cc---hhhHHHHH
Confidence            4567778999999999999999887  45577899999996542111122222110 0 0000000 00   01123355


Q ss_pred             HHHHhCCCcEEEECcCCChHHHHHH
Q 015774          292 VTALNEGRDVIMDGTLSWVPFVEQT  316 (400)
Q Consensus       292 e~AL~eG~dVIIDgT~~~~~~re~~  316 (400)
                      +.....+.++|||++...-.-...+
T Consensus        75 e~i~~~~~dvIIDngAs~~~~l~~y   99 (241)
T PRK13886         75 EMIASTEGDVIIDNGASSFVPLSHY   99 (241)
T ss_pred             HHHhccCCCEEEECCCcchHHHHHH
Confidence            5566678899999987554444333

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.17  E-value=0.0076  Score=57.30  Aligned_cols=47  Identities=19%  Similarity=0.450  Sum_probs=37.5

Q ss_pred             CCCC-EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH
Q 015774          209 ERSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV  258 (400)
Q Consensus       209 ~~~P-~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~  258 (400)
                      ...| ..|-++|+|||||||+..++.+.+.  . ..+..+|..|-+...|.
T Consensus         9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~--~-~~~~aVI~~Di~t~~Da   56 (202)
T COG0378           9 KNRPMLRIGVGGPPGSGKTALIEKTLRALK--D-EYKIAVITGDIYTKEDA   56 (202)
T ss_pred             hcCceEEEEecCCCCcCHHHHHHHHHHHHH--h-hCCeEEEeceeechhhH
Confidence            3466 7899999999999999999888872  2 25778899998885554

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.16  E-value=0.021  Score=59.19  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=49.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCe--EEEeCCccc-cchHHHHHHhcC-CC-CChhhHhHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA--VVVEADAFK-ETDVIYRALSSK-GH-HDDMLQTAELVHQSSTD  285 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~a--vvIdaDefR-e~D~irk~L~~~-G~-~~d~~~aa~~v~~~~~~  285 (400)
                      ..+=++|.|+||+||||+++.+++.+.  .+.+++  +++-.|+=. +-..+++.+... .. ..+   .+...|.....
T Consensus       132 kGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d---e~~~~~~~v~~  206 (380)
T PRK12608        132 KGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD---RPPDEHIRVAE  206 (380)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC---CCHHHHHHHHH
Confidence            344569999999999999999999872  222232  232223222 112333444221 10 111   11223344455


Q ss_pred             HHHHHHHHHHhCCCcEEE
Q 015774          286 AASSLLVTALNEGRDVIM  303 (400)
Q Consensus       286 ~ae~lie~AL~eG~dVII  303 (400)
                      .+...+++..++|++|||
T Consensus       207 ~~~~~Ae~f~~~GkdVVL  224 (380)
T PRK12608        207 LVLERAKRLVEQGKDVVI  224 (380)
T ss_pred             HHHHHHHHHHHcCCCEEE
Confidence            666788888899998876

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.16  E-value=0.025  Score=58.80  Aligned_cols=29  Identities=21%  Similarity=0.123  Sum_probs=25.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .-...|.|.|++||||||+++.|++.+|.
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~  245 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIFNT  245 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            44668999999999999999999999853

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.15  E-value=0.004  Score=57.05  Aligned_cols=22  Identities=36%  Similarity=0.714  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|+|.||+||||+++.+.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7899999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.15  E-value=0.0074  Score=55.06  Aligned_cols=37  Identities=22%  Similarity=0.544  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +++++|..||||||+.+.+++.   ...+.+..+|-. +|-
T Consensus         2 v~ii~GfLGsGKTTli~~ll~~---~~~~~~~~vI~n-e~g   38 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLKR---NRQGERVAVIVN-EFG   38 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH---HTTTS-EEEEEC-STT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH---hcCCceeEEEEc-ccc
Confidence            6899999999999999999952   123456666644 344

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.14  E-value=0.0051  Score=55.84  Aligned_cols=26  Identities=35%  Similarity=0.493  Sum_probs=20.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+.++.||||+||||++..++..+
T Consensus        16 ~~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   16 SNGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCChHHHHHHHHHHh
Confidence            34489999999999999888877776

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.14  E-value=0.0062  Score=56.52  Aligned_cols=42  Identities=21%  Similarity=0.189  Sum_probs=32.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.|.|+|||||||+++.|+..+..   ..+-+.++...+
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~   68 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDI   68 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEeh
Confidence            467789999999999999999999987631   234566765444

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.14  E-value=0.0078  Score=56.36  Aligned_cols=43  Identities=12%  Similarity=0.183  Sum_probs=33.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...++++.|+||+||||++..++...  -..+.++++++.++-.
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~~   60 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEESR   60 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCCH
Confidence            567899999999999999999877543  1235577888876544

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.13  E-value=0.007  Score=55.87  Aligned_cols=43  Identities=23%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -.+..++.+.|++||||||+++.|+..+.   ...+.+.++...+.
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~   66 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLT   66 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcc
Confidence            45778999999999999999999998752   12355777665443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.12  E-value=0.0086  Score=54.99  Aligned_cols=42  Identities=21%  Similarity=0.430  Sum_probs=33.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ..++++||+|+|||.+++.|++.++. +...+.+.+|.-+|..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE   45 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence            47899999999999999999999941 2344678888777764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.10  E-value=0.0052  Score=48.09  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.++.|++||||||+..++.--+
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999987554

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.10  E-value=0.0082  Score=57.39  Aligned_cols=43  Identities=16%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...++++.|+||+||||++..++...  -..+.+++.++.++-.
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g~~~~yi~~e~~~   64 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYGF--LQNGYSVSYVSTQLTT   64 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEeCCCCH
Confidence            456699999999999999987766544  1234577888877644

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.10  E-value=0.035  Score=61.64  Aligned_cols=46  Identities=22%  Similarity=0.351  Sum_probs=36.2

Q ss_pred             CCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHH
Q 015774          211 SPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYR  261 (400)
Q Consensus       211 ~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk  261 (400)
                      .|. .+++.||||+|||++|+.|++.++.     ..+.++..++.+.+...+
T Consensus       482 ~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-----~~~~~d~se~~~~~~~~~  528 (731)
T TIGR02639       482 KPVGSFLFTGPTGVGKTELAKQLAEALGV-----HLERFDMSEYMEKHTVSR  528 (731)
T ss_pred             CCceeEEEECCCCccHHHHHHHHHHHhcC-----CeEEEeCchhhhcccHHH
Confidence            454 6899999999999999999999853     678888877765444433

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.09  E-value=0.0074  Score=52.00  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...++.+.|++||||||++..+.  .       +.+.+++|++.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~--~-------G~i~~~g~di~   48 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI--K-------RKHRLVGDDNV   48 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh--C-------CeEEEeeEeHH
Confidence            345899999999999999999987  2       23677777664

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.08  E-value=0.011  Score=58.27  Aligned_cols=75  Identities=16%  Similarity=0.159  Sum_probs=42.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHH--HHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc---cccCCC
Q 015774          168 EKVTKDLKMKRVFSTLVEEMK--AIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAA  242 (400)
Q Consensus       168 ~~v~~~~~vkr~~~~liee~~--~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l---g~~~~~  242 (400)
                      ..+++-..+|+.+.+++.-+.  .+-.     +..    +.. ..+..-+++.|+||+||||+|+.++..+   |+. ..
T Consensus        22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~-----~~g----~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~-~~   90 (284)
T TIGR02880        22 RELIGLKPVKTRIREIAALLLVERLRQ-----RLG----LAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV-RK   90 (284)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHHHH-----HhC----CCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc-cc
Confidence            456777788888777766321  1110     001    110 1122358899999999999998877765   221 01


Q ss_pred             CCeEEEeCCcc
Q 015774          243 TNAVVVEADAF  253 (400)
Q Consensus       243 ~~avvIdaDef  253 (400)
                      ...+.++.+++
T Consensus        91 ~~~v~v~~~~l  101 (284)
T TIGR02880        91 GHLVSVTRDDL  101 (284)
T ss_pred             ceEEEecHHHH
Confidence            23566665544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.07  E-value=0.0036  Score=53.47  Aligned_cols=43  Identities=19%  Similarity=0.306  Sum_probs=33.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .+..++.|.|++||||||+.+.|+....-   ..+.+.++...+..
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~   51 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISD   51 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTT
T ss_pred             cCCCEEEEEccCCCccccceeeecccccc---cccccccccccccc
Confidence            45679999999999999999999988631   23557777666653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK09087 hypothetical protein; Validated

Probab=96.07  E-value=0.011  Score=56.39  Aligned_cols=83  Identities=14%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCC--CChhhHhHHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH--HDDMLQTAELVHQSSTDAASSLL  291 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~--~~d~~~aa~~v~~~~~~~ae~li  291 (400)
                      .+++.|++||||||+++.+++..       ++..++.++|...  ....+... .  .+|..... ..+..    .-.++
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~~~~~~--~~~~~~~~-~l~iDDi~~~~-~~~~~----lf~l~  110 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKS-------DALLIHPNEIGSD--AANAAAEG-PVLIEDIDAGG-FDETG----LFHLI  110 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhc-------CCEEecHHHcchH--HHHhhhcC-eEEEECCCCCC-CCHHH----HHHHH
Confidence            46999999999999999999876       4468887666521  11222111 0  00100000 01111    22356


Q ss_pred             HHHHhCCCcEEEECcCCChH
Q 015774          292 VTALNEGRDVIMDGTLSWVP  311 (400)
Q Consensus       292 e~AL~eG~dVIIDgT~~~~~  311 (400)
                      ....+.|..+|+-++...+.
T Consensus       111 n~~~~~g~~ilits~~~p~~  130 (226)
T PRK09087        111 NSVRQAGTSLLMTSRLWPSS  130 (226)
T ss_pred             HHHHhCCCeEEEECCCChHH
Confidence            66778899999988765443

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.07  E-value=0.0083  Score=56.66  Aligned_cols=42  Identities=21%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.+.++++.|+|||||||++..++...  -.++..+.+++.++-
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~   64 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT   64 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC
Confidence            577899999999999999999997653  134668888988753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.06  E-value=0.0073  Score=55.04  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=31.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|++||||||+.+.|+..+.  . ..+.+.++...+
T Consensus        15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~-~~G~i~~~g~~~   56 (190)
T TIGR01166        15 AERGEVLALLGANGAGKSTLLLHLNGLLR--P-QSGAVLIDGEPL   56 (190)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC--C-CceeEEECCEEc
Confidence            45678999999999999999999998752  1 234466665443

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.05  E-value=0.0074  Score=55.84  Aligned_cols=43  Identities=26%  Similarity=0.322  Sum_probs=32.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -.+..++.+.|+|||||||+++.|+..+..   ..+-+.++...+.
T Consensus        25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~   67 (214)
T TIGR02673        25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVN   67 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence            356789999999999999999999987621   2345667665443

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.05  E-value=0.007  Score=47.69  Aligned_cols=57  Identities=18%  Similarity=0.301  Sum_probs=41.3

Q ss_pred             HHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhh
Q 015774           85 LAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRK  164 (400)
Q Consensus        85 l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~  164 (400)
                      |..++.++.+.+..+  .++++.    .+ +++++|||+              .||.+|+|++.+      ..+++..|+
T Consensus         1 L~~~l~kt~~~l~~~--~~~~~~----~i-~~~l~ele~--------------~Li~aDVg~~~a------~~i~~~ik~   53 (75)
T PF02881_consen    1 LKKGLSKTFKKLSGS--IFLTEK----DI-EEFLEELEE--------------ALIEADVGVEVA------EKIIENIKK   53 (75)
T ss_dssp             HHHHHHHHHHHHHCC--SSCTHH----HH-HHHHHHHHH--------------HHHHTTTSHHHH------HHHHHHHHH
T ss_pred             ChHHHHHHHHHHhCc--ccccHH----hH-HHHHHHHHH--------------HHHHcCcCHHHH------HHHHHHHHH
Confidence            345566666666555  222222    38 999999999              999999999999      888888888


Q ss_pred             hhhh
Q 015774          165 QRFE  168 (400)
Q Consensus       165 ~rf~  168 (400)
                      +...
T Consensus        54 ~~~~   57 (75)
T PF02881_consen   54 KLIK   57 (75)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            4443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.05  E-value=0.0072  Score=55.76  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=31.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|++||||||+.+.|+..+.   ...+.+.++...+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~   64 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPI   64 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEh
Confidence            35778999999999999999999998752   1234566665444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.05  E-value=0.0076  Score=55.71  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=30.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.+.|+|||||||+++.|+..+..   ..+-+.++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~   63 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRD   63 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEE
Confidence            357789999999999999999999987621   23446665543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.04  E-value=0.042  Score=53.60  Aligned_cols=27  Identities=26%  Similarity=0.164  Sum_probs=24.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ...-+++.|++|+||||+++.+++...
T Consensus        15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128          15 KGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            667889999999999999999999873

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.04  E-value=0.0074  Score=55.45  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ++++.|+|||||||+|..++...+     .+++++++..
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~-----~~~~y~at~~   34 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELG-----GPVTYIATAE   34 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEccC
Confidence            479999999999999999998752     4667776543

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PTZ00202 tuzin; Provisional

Probab=96.03  E-value=0.033  Score=59.29  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ..|.++.|+|++|+||||+++.+...++.     -.+++|.-..  .+.++..+.+.|.++.. .....    ...+.+.
T Consensus       284 ~~privvLtG~~G~GKTTLlR~~~~~l~~-----~qL~vNprg~--eElLr~LL~ALGV~p~~-~k~dL----LrqIqea  351 (550)
T PTZ00202        284 AHPRIVVFTGFRGCGKSSLCRSAVRKEGM-----PAVFVDVRGT--EDTLRSVVKALGVPNVE-ACGDL----LDFISEA  351 (550)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhcCCc-----eEEEECCCCH--HHHHHHHHHHcCCCCcc-cHHHH----HHHHHHH
Confidence            35679999999999999999999988742     3566666543  23333333333532211 11111    1222233


Q ss_pred             HHHHHHhCCCcEEEECcCCChH
Q 015774          290 LLVTALNEGRDVIMDGTLSWVP  311 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~  311 (400)
                      +......+|+.+||--++..-.
T Consensus       352 Ll~~~~e~GrtPVLII~lreg~  373 (550)
T PTZ00202        352 CRRAKKMNGETPLLVLKLREGS  373 (550)
T ss_pred             HHHHHHhCCCCEEEEEEecCCC
Confidence            3333444499888876654433

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.03  E-value=0.0074  Score=56.94  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.|.|++||||||+++.|+..+.   ...+-+.+++..+
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~   66 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDI   66 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEh
Confidence            35778999999999999999999997652   1234567766444

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.03  E-value=0.017  Score=55.19  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=30.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      +...+|.|.|.+|+||||+|..++++......-..++.++..
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~   58 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS   58 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc
Confidence            577899999999999999999999883212223234445433

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.02  E-value=0.011  Score=55.32  Aligned_cols=43  Identities=14%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe  252 (400)
                      +...++.+.|+|||||||++..++...-.+.    .+.+++.|+++.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            5678999999999999999999985531111    135788999876

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.02  E-value=0.008  Score=56.45  Aligned_cols=48  Identities=25%  Similarity=0.252  Sum_probs=34.2

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ..+...-.+..++.+.|++||||||+++.|+..+..   ..+.+.++...+
T Consensus        22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   69 (233)
T cd03258          22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDL   69 (233)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence            333333467789999999999999999999987631   234566665443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.02  E-value=0.0082  Score=59.78  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~  234 (400)
                      ..+.+|+|+|+|||||||+++.|..
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~~   28 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALED   28 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHH
Confidence            3456999999999999999999963

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.00  E-value=0.0085  Score=56.03  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=33.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc-----cccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES-----FWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l-----g~~~~~~~avvIdaDefR  254 (400)
                      -.+..++.+.|++||||||+++.|+..+     .-   ..+-+.+++.++.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~   70 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIY   70 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhh
Confidence            3577899999999999999999999875     21   2355777765543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.98  E-value=0.0081  Score=56.72  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=31.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.|.|++||||||+++.|+..+..   ..+-+.++...+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~i   65 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDL   65 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEc
Confidence            467889999999999999999999976521   234466665443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.98  E-value=0.0099  Score=54.60  Aligned_cols=42  Identities=17%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.+.|+|||||||+++.|+..+..   ..+-+.++.-.+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i   64 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNI   64 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCccc
Confidence            457789999999999999999999987632   234467765444

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.98  E-value=0.0087  Score=55.22  Aligned_cols=42  Identities=19%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+.+.|+..+..   ..+-+.++...+
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   64 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKL   64 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence            457789999999999999999999987621   234466665444

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=95.98  E-value=0.02  Score=56.11  Aligned_cols=97  Identities=19%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCC-----CChhhHhHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH-----HDDMLQTAELVHQSST  284 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~-----~~d~~~aa~~v~~~~~  284 (400)
                      .++.=+||.|..|+|||++++++..++  ..++-..+-|+.+++.....+++.|.....     .+|-   ++...+..+
T Consensus        50 ~pannvLL~G~rGtGKSSlVkall~~y--~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDL---sFe~~d~~y  124 (249)
T PF05673_consen   50 LPANNVLLWGARGTGKSSLVKALLNEY--ADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDL---SFEEGDTEY  124 (249)
T ss_pred             CCCcceEEecCCCCCHHHHHHHHHHHH--hhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCC---CCCCCcHHH
Confidence            345567889999999999999999998  345556788888888877777777765421     1121   111112233


Q ss_pred             HHHHHHHHHHHhCC-CcEEEECcCCChH
Q 015774          285 DAASSLLVTALNEG-RDVIMDGTLSWVP  311 (400)
Q Consensus       285 ~~ae~lie~AL~eG-~dVIIDgT~~~~~  311 (400)
                      ....++++-.+... .||+|=.|=.++.
T Consensus       125 k~LKs~LeGgle~~P~NvliyATSNRRH  152 (249)
T PF05673_consen  125 KALKSVLEGGLEARPDNVLIYATSNRRH  152 (249)
T ss_pred             HHHHHHhcCccccCCCcEEEEEecchhh
Confidence            44444555544322 3888887755444

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.97  E-value=0.0069  Score=56.28  Aligned_cols=27  Identities=22%  Similarity=0.453  Sum_probs=24.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.=|+++|+||+||||++..+++.+
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L   29 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKL   29 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence            356779999999999999999999887

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.97  E-value=0.0091  Score=57.87  Aligned_cols=46  Identities=22%  Similarity=0.345  Sum_probs=34.2

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       205 l~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...-....++.++||+||||||+.+-|-.--   .-..+-+.|+++..
T Consensus        21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~   66 (240)
T COG1126          21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDV   66 (240)
T ss_pred             cceeEcCCCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEec
Confidence            33334677899999999999999999987543   23456688887433

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.97  E-value=0.022  Score=57.58  Aligned_cols=92  Identities=25%  Similarity=0.319  Sum_probs=50.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC----ChhhHhHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----DDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~----~d~~~aa~~v~~~~~~~a  287 (400)
                      .-+|+++|++||||||+.+.+...+.  ......++.-.|..-     +  .......    .+.... .       .-.
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~tiEdp~E-----~--~~~~~~~~i~q~evg~~-~-------~~~  184 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITIEDPIE-----Y--VHRNKRSLINQREVGLD-T-------LSF  184 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEEcCChh-----h--hccCccceEEccccCCC-C-------cCH
Confidence            46899999999999999999998762  222222333223211     1  1100000    000000 0       011


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      ...+..++..+-++|+-|-...+......+..+
T Consensus       185 ~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa  217 (343)
T TIGR01420       185 ANALRAALREDPDVILIGEMRDLETVELALTAA  217 (343)
T ss_pred             HHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHH
Confidence            234566888888999988887766554444444

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.96  E-value=0.0091  Score=55.49  Aligned_cols=42  Identities=21%  Similarity=0.218  Sum_probs=31.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.+.|+|||||||+++.|+..+.   ...+-+.+++..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~   66 (220)
T cd03263          25 VYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSI   66 (220)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEec
Confidence            36778999999999999999999998752   1234466665443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK05973 replicative DNA helicase; Provisional

Probab=95.96  E-value=0.0087  Score=58.11  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=33.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..+++|+|.||+||||++..++...  -.++..+++++.++=
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes  103 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT  103 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC
Confidence            567799999999999999999988765  234567888887654

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.95  E-value=0.0089  Score=56.23  Aligned_cols=42  Identities=21%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.|.|++||||||+++.|+..+.   ...+-+.+++..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~   65 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDI   65 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEec
Confidence            46778999999999999999999997652   1234466665444

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.95  E-value=0.0085  Score=56.68  Aligned_cols=32  Identities=31%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       205 l~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +...-.+..++.+.|+|||||||+++.|+..+
T Consensus        21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33334678899999999999999999999875

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=95.95  E-value=0.0063  Score=63.42  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .-+||.|+||+||||+|+.|+..+++     ..+.+++..+.
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~-----pf~~id~~~l~  145 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDV-----PFAIADATTLT  145 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCC-----Cceecchhhcc
Confidence            35789999999999999999999865     55666665544

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.93  E-value=0.0095  Score=56.46  Aligned_cols=42  Identities=19%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.|.|++||||||+++.|+..+..   ..+.+.++...+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   65 (242)
T cd03295          24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDI   65 (242)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEc
Confidence            467789999999999999999999987621   234466765544

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.93  E-value=0.0086  Score=56.25  Aligned_cols=43  Identities=21%  Similarity=0.211  Sum_probs=32.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -.+..++.+.|+|||||||+++.|+..+.  . ..+-+.+++..+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~-~~G~i~~~g~~~~   65 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFLR--P-TSGSVLFDGEDIT   65 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCCC--C-CCceEEECCEECC
Confidence            35778999999999999999999998752  1 2344666655443

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.93  E-value=0.0053  Score=51.62  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      |+|.|+||+|||+++..|+..+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999998873

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.93  E-value=0.01  Score=55.12  Aligned_cols=47  Identities=23%  Similarity=0.262  Sum_probs=33.3

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+...-.+..++.+.|++||||||+++.|+..+..   ..+-+.++...+
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   64 (222)
T cd03224          18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDI   64 (222)
T ss_pred             eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence            33333467889999999999999999999977621   234466665443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.93  E-value=0.0067  Score=56.07  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.+.|++||||||+++.|+..+..   ..+-+.++...
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~   63 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKP   63 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCc
Confidence            367889999999999999999999987521   23445665433

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.93  E-value=0.0095  Score=55.56  Aligned_cols=42  Identities=21%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|++||||||+.+.|+..+.  . ..+-+.++...+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~-~~G~i~~~g~~~   64 (220)
T cd03265          23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLK--P-TSGRATVAGHDV   64 (220)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC--C-CceEEEECCEec
Confidence            35778999999999999999999998752  1 234466665443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.92  E-value=0.0089  Score=56.29  Aligned_cols=42  Identities=26%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.|.|+|||||||+++.|+..+.-   ..+-+.+++..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~   64 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVLIDGEDI   64 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence            357789999999999999999999987621   234466665443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.92  E-value=0.0092  Score=54.23  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=22.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ...-+++.|++|+||||++..|.++
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3568999999999999999999887

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=95.91  E-value=0.018  Score=58.51  Aligned_cols=84  Identities=25%  Similarity=0.455  Sum_probs=56.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh----cC------C-------C-CChh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS----SK------G-------H-HDDM  272 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~----~~------G-------~-~~d~  272 (400)
                      +-.++++.|+.|||||-++-.||.++       ++-+|++|.+-    +|+.|.    ..      |       + +++.
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf-------~~EIINsDkmQ----vYkGldivTnK~t~~e~~gVPHHLlg~l~~~~   74 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRF-------PGEIINSDKMQ----VYKGLDIVTNKITLQERKGVPHHLLGHLHPEA   74 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhC-------Cceeeccccee----eecCcccccccCChhhcCCCChHHhCcCChHh
Confidence            45699999999999999999999998       55899999875    233320    00      1       1 1122


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHhCCC-cEEEECcCCC
Q 015774          273 LQTAELVHQSSTDAASSLLVTALNEGR-DVIMDGTLSW  309 (400)
Q Consensus       273 ~~aa~~v~~~~~~~ae~lie~AL~eG~-dVIIDgT~~~  309 (400)
                      .+++..+    ...+...++...+.|. ++|.=||+..
T Consensus        75 e~t~~~F----~~~a~~aie~I~~rgk~PIv~GGs~~y  108 (348)
T KOG1384|consen   75 EYTAGEF----EDDASRAIEEIHSRGKLPIVVGGSNSY  108 (348)
T ss_pred             hccHHHH----HHHHHHHHHHHHhCCCCCEEeCCchhh
Confidence            3344433    4555567778888887 7777777764

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.91  E-value=0.017  Score=57.58  Aligned_cols=47  Identities=19%  Similarity=0.265  Sum_probs=36.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ...|.+|-++|+||+||||+++.|...+.-....+.+-+|-.|-|--
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy  125 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHY  125 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccccc
Confidence            67899999999999999999999888762112223477888998873

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.91  E-value=0.0099  Score=55.28  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=34.3

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ..+...-.+..++.+.|++||||||+.+.|+..+.   ...+-+.+++..+
T Consensus        22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~   69 (221)
T TIGR02211        22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSL   69 (221)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEh
Confidence            33333346788999999999999999999998762   1235566665443

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=95.90  E-value=0.011  Score=56.91  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=36.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...++++.|+||||||+++.+++...  -..+.+++.|+.|+-.
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~~   63 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEESP   63 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCCH
Confidence            566799999999999999999988876  3456789999988765

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.89  E-value=0.027  Score=63.72  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=50.4

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCC-EEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSP-VLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P-~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      +.+.=++++++...+...+..-+...++-.              . ....| ..+++.|+||+||||+|+.|++.+.  .
T Consensus       562 l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl--------------~-~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~  624 (857)
T PRK10865        562 MEQELHHRVIGQNEAVEAVSNAIRRSRAGL--------------S-DPNRPIGSFLFLGPTGVGKTELCKALANFMF--D  624 (857)
T ss_pred             HHHHhCCeEeCCHHHHHHHHHHHHHHHhcc--------------c-CCCCCCceEEEECCCCCCHHHHHHHHHHHhh--c
Confidence            333444566777776666666665532210              0 12334 4789999999999999999998873  2


Q ss_pred             CCCCeEEEeCCccccc
Q 015774          241 AATNAVVVEADAFKET  256 (400)
Q Consensus       241 ~~~~avvIdaDefRe~  256 (400)
                      .+...+.++..+|.+.
T Consensus       625 ~~~~~i~id~se~~~~  640 (857)
T PRK10865        625 SDDAMVRIDMSEFMEK  640 (857)
T ss_pred             CCCcEEEEEhHHhhhh
Confidence            2345677887777543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.89  E-value=0.0098  Score=55.68  Aligned_cols=48  Identities=19%  Similarity=0.173  Sum_probs=34.1

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ..+...-.+..++.|.|++||||||+++.|+..+..   ..+-+.+++..+
T Consensus        27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~   74 (228)
T PRK10584         27 TGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQPL   74 (228)
T ss_pred             eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCEEc
Confidence            333333467889999999999999999999987621   234466665444

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.88  E-value=0.0095  Score=56.59  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.+.|+|||||||+++.|+..+.-   ..+-+.+++.+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~   66 (241)
T PRK14250         26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSILIDGVD   66 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEE
Confidence            356789999999999999999999987521   23446665543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.88  E-value=0.012  Score=54.56  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=23.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .|.++.++|++||||||+++.|...+
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHH
Confidence            45588999999999999999999887

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.87  E-value=0.01  Score=55.60  Aligned_cols=42  Identities=19%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+++.|+..+.   ...+-+.++...+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~   64 (230)
T TIGR03410        23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDI   64 (230)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEC
Confidence            35788999999999999999999998762   1234466665443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.87  E-value=0.0056  Score=64.69  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..-||++|+||+||||+|++||+-+
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHH
Confidence            4468999999999999999999977

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.87  E-value=0.008  Score=57.45  Aligned_cols=39  Identities=21%  Similarity=0.159  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+++.|+||+|||+++..+++...  ..+..+.+++.|.+.
T Consensus        47 ~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~   85 (235)
T PRK08084         47 YIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRA   85 (235)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHh
Confidence            689999999999999999998763  234567788777643

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.86  E-value=0.012  Score=54.39  Aligned_cols=41  Identities=20%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..++.+.|++||||||+.+.|+..+.   ...+-+.++...+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~   64 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSY   64 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcc
Confidence            5778999999999999999999998752   1234466766544

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.86  E-value=0.035  Score=56.06  Aligned_cols=45  Identities=22%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .|..+++.|+||+||||+++.+++.+.-......++.|++.....
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~   98 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT   98 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence            455679999999999999999998762100113467787766543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.86  E-value=0.011  Score=55.48  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+.+.|+..+.-   ..+.+.+++..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~   64 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKILLDGQDI   64 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEec
Confidence            357789999999999999999999987521   234466655433

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.85  E-value=0.012  Score=53.30  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=32.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -++..++.+.|++||||||+++.|+.....   ..+.+.++...
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~   65 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVP   65 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEE
Confidence            467889999999999999999999987632   34556776543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK06893 DNA replication initiation factor; Validated

Probab=95.85  E-value=0.0092  Score=56.75  Aligned_cols=36  Identities=22%  Similarity=0.380  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      .+++.|+||+|||+++..+++...  ..+.++.+++.+
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~   76 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLS   76 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHH
Confidence            689999999999999999999873  335577788764

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=95.85  E-value=0.035  Score=62.71  Aligned_cols=75  Identities=19%  Similarity=0.254  Sum_probs=49.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774          168 EKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV  247 (400)
Q Consensus       168 ~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv  247 (400)
                      +++.+...+...+...+....+          .+    ..+.++...+++.|+||+|||++|+.|++.+.  ..+...+.
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~----------gl----~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~  628 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRA----------GL----SDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVR  628 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhc----------cC----CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEE
Confidence            4567777666666666554211          11    11123345788999999999999999999874  23457788


Q ss_pred             EeCCccccchH
Q 015774          248 VEADAFKETDV  258 (400)
Q Consensus       248 IdaDefRe~D~  258 (400)
                      +|..+|.+.+.
T Consensus       629 ~d~s~~~~~~~  639 (852)
T TIGR03346       629 IDMSEYMEKHS  639 (852)
T ss_pred             Eechhhcccch
Confidence            98887765443

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.84  E-value=0.011  Score=54.63  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -++..++.+.|++||||||+.+.|+..+.  . ..+-+.++...+.
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p-~~G~v~~~g~~~~   66 (204)
T PRK13538         24 LNAGELVQIEGPNGAGKTSLLRILAGLAR--P-DAGEVLWQGEPIR   66 (204)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCcEEEECCEEcc
Confidence            46778999999999999999999998763  1 2355677765543

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.84  E-value=0.01  Score=55.47  Aligned_cols=41  Identities=17%  Similarity=0.211  Sum_probs=31.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -+...++.|.|++||||||+.+.|+..+..   ..+.+.++...
T Consensus        26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~   66 (229)
T cd03254          26 IKPGETVAIVGPTGAGKTTLINLLMRFYDP---QKGQILIDGID   66 (229)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEe
Confidence            457789999999999999999999987621   23556666543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.84  E-value=0.014  Score=55.06  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=37.2

Q ss_pred             ccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          199 TDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       199 ~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..+..++...-.....|.++||+||||||+.+.++.-..-   ..+.+.+.+.++-
T Consensus        16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp---~~G~l~f~Ge~vs   68 (223)
T COG4619          16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDVS   68 (223)
T ss_pred             CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC---CCceEEEcCcccc
Confidence            3444555544567789999999999999999999987521   2344555555544

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.83  E-value=0.01  Score=52.83  Aligned_cols=36  Identities=17%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeE-EEeCC
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV-VVEAD  251 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~av-vIdaD  251 (400)
                      +|.++|+.+|||||+++.|.+.+  .+.+..+. +.+.|
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l--~~~g~~v~~ik~~~   38 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL--KRRGYRVAVIKHTD   38 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEE-S
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--hHcCCceEEEEEcc
Confidence            68899999999999999999987  34444444 55544

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.82  E-value=0.011  Score=55.15  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+...-++..++.+.|++||||||+.+.|+..+.-   ..+-+.+++..+
T Consensus        23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   69 (228)
T cd03257          23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDL   69 (228)
T ss_pred             CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence            33333467789999999999999999999987621   234466665444

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.82  E-value=0.0079  Score=49.75  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+||||||+.+.|....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999999775

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.82  E-value=0.0076  Score=55.65  Aligned_cols=42  Identities=31%  Similarity=0.422  Sum_probs=31.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|++||||||+++.|+..+.  . ..+-+.++...+
T Consensus        24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~-~~G~i~~~g~~i   65 (214)
T cd03292          24 ISAGEFVFLVGPSGAGKSTLLKLIYKEEL--P-TSGTIRVNGQDV   65 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC--C-CceEEEECCEEc
Confidence            46788999999999999999999998762  1 234466665433

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK04328 hypothetical protein; Provisional

Probab=95.82  E-value=0.012  Score=56.81  Aligned_cols=43  Identities=21%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...++++.|+|||||||++..++...  -..+..+++++.++-.
T Consensus        21 p~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~~   63 (249)
T PRK04328         21 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEHP   63 (249)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCCH
Confidence            467899999999999999999977653  1346678999887644

>PHA02244 ATPase-like protein

Probab=95.82  E-value=0.024  Score=58.77  Aligned_cols=30  Identities=20%  Similarity=0.431  Sum_probs=25.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      ++|.|+||+||||+|+.++..+++     ..+.++
T Consensus       122 VLL~GppGtGKTtLA~aLA~~lg~-----pfv~In  151 (383)
T PHA02244        122 VFLKGGAGSGKNHIAEQIAEALDL-----DFYFMN  151 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-----CEEEEe
Confidence            577999999999999999999864     566666

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.81  E-value=0.011  Score=56.15  Aligned_cols=41  Identities=20%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.+.|+|||||||+++.|+..+..   ..+.+.++...
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~   66 (250)
T PRK11264         26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDIT   66 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEE
Confidence            357789999999999999999999977521   23445555433

>PF13479 AAA_24: AAA domain

Probab=95.80  E-value=0.0084  Score=56.41  Aligned_cols=33  Identities=21%  Similarity=0.568  Sum_probs=27.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +.|.-++|.|+||+||||++..+          ++.++|+.|.
T Consensus         1 ~~~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~   33 (213)
T PF13479_consen    1 KKPIKILIYGPPGSGKTTLAASL----------PKPLFIDTEN   33 (213)
T ss_pred             CCceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCC
Confidence            36788999999999999999988          1558888764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.80  E-value=0.0081  Score=55.62  Aligned_cols=42  Identities=19%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|++||||||+++.|+..+.   ...+.+.++...+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~   64 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDV   64 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEc
Confidence            35778999999999999999999998652   1234466665443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.80  E-value=0.011  Score=55.43  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=32.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.+.|++||||||+++.|+..+.  . ..+-+.+++..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p-~~G~i~~~g~~~   66 (234)
T cd03251          25 IPAGETVALVGPSGSGKSTLVNLIPRFYD--V-DSGRILIDGHDV   66 (234)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccc--C-CCCEEEECCEEh
Confidence            45788999999999999999999998762  1 234466665443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=95.79  E-value=0.087  Score=52.77  Aligned_cols=63  Identities=21%  Similarity=0.301  Sum_probs=45.3

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          160 AATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       160 ~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +-.+...|++|++.+..|+.-.-+.+= .+             .|-....=.|.-+|.-||||+|||-+|++||.+.
T Consensus       113 e~~~~it~ddViGqEeAK~kcrli~~y-Le-------------nPe~Fg~WAPknVLFyGppGTGKTm~Akalane~  175 (368)
T COG1223         113 EIISDITLDDVIGQEEAKRKCRLIMEY-LE-------------NPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA  175 (368)
T ss_pred             hhhccccHhhhhchHHHHHHHHHHHHH-hh-------------ChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence            445567899999999988875544432 11             1111112357889999999999999999999987

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.78  E-value=0.012  Score=55.30  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=31.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.+.|++||||||+++.|+....   ...+-+.++...+
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~   71 (225)
T PRK10247         30 LRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDI   71 (225)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEc
Confidence            46778999999999999999999998652   1234566665444

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.78  E-value=0.012  Score=53.56  Aligned_cols=43  Identities=12%  Similarity=0.231  Sum_probs=32.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -++..++.+.|+|||||||+.+.|+..+.-   ..+-+.++..++.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   65 (182)
T cd03215          23 VRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVT   65 (182)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECC
Confidence            356779999999999999999999987631   2355677765443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.78  E-value=0.014  Score=54.26  Aligned_cols=43  Identities=16%  Similarity=0.295  Sum_probs=32.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe  252 (400)
                      +...++.+.|+||+||||++..++...-.++    ....++.|+++.
T Consensus        17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~   63 (226)
T cd01393          17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG   63 (226)
T ss_pred             cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence            5677999999999999999999987642110    125778899876

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.78  E-value=0.012  Score=55.49  Aligned_cols=41  Identities=24%  Similarity=0.262  Sum_probs=31.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.+.|++||||||+++.|+..+.  . ..+-+.+++..
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~~G~i~~~g~~   65 (237)
T cd03252          25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYV--P-ENGRVLVDGHD   65 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcC--C-CCCEEEECCee
Confidence            36788999999999999999999998762  1 23446666543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.77  E-value=0.011  Score=55.79  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=31.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+++.|+..+..   ..+-+.++...+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   65 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKV   65 (240)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence            357789999999999999999999987621   234466665443

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.77  E-value=0.0082  Score=55.74  Aligned_cols=42  Identities=24%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+.+.|+..+.-   ..+-+.++...+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   67 (216)
T TIGR00960        26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDL   67 (216)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeh
Confidence            357789999999999999999999987621   234566765433

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.76  E-value=0.012  Score=55.08  Aligned_cols=45  Identities=20%  Similarity=0.294  Sum_probs=31.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+++.|+..+.-.+...+-+.++...+
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~   74 (226)
T cd03234          30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR   74 (226)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence            367789999999999999999999987620001234466665443

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.75  E-value=0.012  Score=55.31  Aligned_cols=42  Identities=24%  Similarity=0.168  Sum_probs=31.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+++.|+..+..   ..+-+.++...+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   63 (232)
T PRK10771         22 VERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQDH   63 (232)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCeec
Confidence            357789999999999999999999987521   234456655443

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.75  E-value=0.013  Score=55.00  Aligned_cols=39  Identities=33%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      ++..++.+.|+|||||||+.+.|+..+..   ..+-+.+++.
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~   42 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPP---AKGTVKVAGA   42 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCc
Confidence            35679999999999999999999987521   2234556554

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.74  E-value=0.013  Score=54.11  Aligned_cols=40  Identities=15%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+. ++.+.|+|||||||+++.|+..+.  . ..+-+.++..++
T Consensus        24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~-~~G~i~~~g~~~   63 (211)
T cd03264          24 GPG-MYGLLGPNGAGKTTLMRILATLTP--P-SSGTIRIDGQDV   63 (211)
T ss_pred             cCC-cEEEECCCCCCHHHHHHHHhCCCC--C-CccEEEECCCcc
Confidence            345 899999999999999999998652  1 234466766544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3911 Predicted ATPase [General function prediction only]

Probab=95.74  E-value=0.009  Score=55.10  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=22.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -.+++++|.||+||||+..+|+..-
T Consensus         9 ~~~fIltGgpGaGKTtLL~aLa~~G   33 (183)
T COG3911           9 HKRFILTGGPGAGKTTLLAALARAG   33 (183)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHcC
Confidence            3689999999999999999999883

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.73  E-value=0.012  Score=56.67  Aligned_cols=93  Identities=24%  Similarity=0.323  Sum_probs=50.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ....|+++|++||||||+...|.....  .....++.|+ ++++.        +...... .......      ..-...
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~--~~~~~iv~iEd~~E~~--------l~~~~~~-~~~~~~~------~~~~~~  188 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIP--PEDERIVTIEDPPELR--------LPGPNQI-QIQTRRD------EISYED  188 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCH--TTTSEEEEEESSS-S----------SCSSEE-EEEEETT------TBSHHH
T ss_pred             cceEEEEECCCccccchHHHHHhhhcc--ccccceEEecccccee--------ecccceE-EEEeecC------cccHHH
Confidence            457999999999999999999999873  2223445554 33332        1111000 0000000      001122


Q ss_pred             HHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      ++..++..+-|+|+-|-......... +..+.
T Consensus       189 ~l~~~LR~~pD~iiigEiR~~e~~~~-~~a~~  219 (270)
T PF00437_consen  189 LLKSALRQDPDVIIIGEIRDPEAAEA-IQAAN  219 (270)
T ss_dssp             HHHHHTTS--SEEEESCE-SCHHHHH-HHHHH
T ss_pred             HHHHHhcCCCCcccccccCCHhHHHH-HHhhc
Confidence            55668889999999998887765444 44443

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.73  E-value=0.014  Score=53.69  Aligned_cols=43  Identities=21%  Similarity=0.180  Sum_probs=32.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -.+..++.+.|++||||||+.+.|+..+.   ...+.+.++...+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~   65 (198)
T TIGR01189        23 LNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALA   65 (198)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcc
Confidence            35778999999999999999999998762   12355677765543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.72  E-value=0.0084  Score=55.90  Aligned_cols=39  Identities=26%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      -++..++.+.|++||||||+++.|+..+..   ..+.+.++.
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g   65 (220)
T cd03293          27 VEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDG   65 (220)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC
Confidence            357789999999999999999999987521   234455554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=95.72  E-value=0.016  Score=63.54  Aligned_cols=75  Identities=24%  Similarity=0.234  Sum_probs=49.3

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      ..+|.++......+..+..+++-++.-.      .+   ..+.  ...|.-+++.|+||+||||+++.++.+++.     
T Consensus       148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~------~~---~~~~--~~~~~gill~G~~G~GKt~~~~~~a~~~~~-----  211 (644)
T PRK10733        148 KTTFADVAGCDEAKEEVAELVEYLREPS------RF---QKLG--GKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-----  211 (644)
T ss_pred             hCcHHHHcCHHHHHHHHHHHHHHhhCHH------HH---HhcC--CCCCCcEEEECCCCCCHHHHHHHHHHHcCC-----
Confidence            4567788777777777776665422100      00   1111  233455999999999999999999999854     


Q ss_pred             CeEEEeCCccc
Q 015774          244 NAVVVEADAFK  254 (400)
Q Consensus       244 ~avvIdaDefR  254 (400)
                      +.+.+++.+|.
T Consensus       212 ~f~~is~~~~~  222 (644)
T PRK10733        212 PFFTISGSDFV  222 (644)
T ss_pred             CEEEEehHHhH
Confidence            56667765543

>CHL00095 clpC Clp protease ATP binding subunit

Probab=95.72  E-value=0.05  Score=61.26  Aligned_cols=47  Identities=19%  Similarity=0.373  Sum_probs=35.6

Q ss_pred             CCC-EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH
Q 015774          210 RSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV  258 (400)
Q Consensus       210 ~~P-~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~  258 (400)
                      ..| ..+++.||+|+|||++|+.||+.+..  ...+.+.+|..+|.+.+.
T Consensus       536 ~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~--~~~~~~~~d~s~~~~~~~  583 (821)
T CHL00095        536 NRPIASFLFSGPTGVGKTELTKALASYFFG--SEDAMIRLDMSEYMEKHT  583 (821)
T ss_pred             CCCceEEEEECCCCCcHHHHHHHHHHHhcC--CccceEEEEchhcccccc
Confidence            344 46789999999999999999998842  234678888777765443

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.72  E-value=0.012  Score=55.57  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.+.|++||||||+++.|+....   ...+-+.++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~   65 (242)
T PRK11124         25 CPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNH   65 (242)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEe
Confidence            35778999999999999999999998752   123446666544

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.71  E-value=0.013  Score=59.79  Aligned_cols=27  Identities=22%  Similarity=0.436  Sum_probs=25.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..|.+|.++|.+||||||++..|..++
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l   29 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRL   29 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999998

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.71  E-value=0.013  Score=55.83  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=32.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+++.|+.....   ..+.+.++...+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   69 (255)
T PRK11300         28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHI   69 (255)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEEC
Confidence            367889999999999999999999987521   234566665444

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.71  E-value=0.012  Score=56.09  Aligned_cols=42  Identities=24%  Similarity=0.288  Sum_probs=31.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|+|||||||+.+.|+..+..   ..+-+.++...+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i   64 (252)
T TIGR03005        23 VAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQL   64 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence            467889999999999999999999987621   234466655433

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.71  E-value=0.014  Score=53.03  Aligned_cols=42  Identities=21%  Similarity=0.296  Sum_probs=32.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|++||||||+.+.|+....   ...+.+.++...+
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~   63 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDL   63 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEC
Confidence            35778999999999999999999998762   1235577766444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=95.70  E-value=0.012  Score=55.16  Aligned_cols=41  Identities=17%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.|.|+|||||||+.+.|+.....   ..+.+.++...
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~   64 (236)
T cd03253          24 IPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQD   64 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEE
Confidence            357789999999999999999999987621   23456666543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.69  E-value=0.013  Score=54.09  Aligned_cols=41  Identities=22%  Similarity=0.232  Sum_probs=31.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..++.+.|++||||||+.+.|+..+.   ...+-+.++...+
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~   62 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDV   62 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEc
Confidence            5678999999999999999999998762   1234466766544

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12377 putative replication protein; Provisional

Probab=95.69  E-value=0.0084  Score=58.47  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .-+++.|+||+|||+++.+++..+  ...+..+++++..++.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~~l~  141 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVPDVM  141 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHHHHH
Confidence            468999999999999999999998  3445667777765543

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=95.69  E-value=0.014  Score=52.66  Aligned_cols=43  Identities=16%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc----c----cCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF----W----SGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg----~----~~~~~~avvIdaDef  253 (400)
                      ...+++++|+||+||||++..++...-    |    ...+.++++|+.|.=
T Consensus        31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~   81 (193)
T PF13481_consen   31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS   81 (193)
T ss_dssp             TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence            456999999999999999999888762    1    014567888987764

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=95.69  E-value=0.012  Score=57.06  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +++++|.+|+||||++..++..+  .+.+..+.+||.|--.
T Consensus         2 ~~~~~gkgG~GKtt~a~~la~~~--a~~g~~vLlvd~D~~~   40 (254)
T cd00550           2 YIFFGGKGGVGKTTISAATAVRL--AEQGKKVLLVSTDPAH   40 (254)
T ss_pred             EEEEECCCCchHHHHHHHHHHHH--HHCCCCceEEeCCCcc
Confidence            78999999999999999999987  5667789999999744

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>TIGR00767 rho transcription termination factor Rho

Probab=95.69  E-value=0.047  Score=57.15  Aligned_cols=88  Identities=16%  Similarity=0.168  Sum_probs=48.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC--CeEEEeCCcc-ccchHHHHHHhcC---CCCChhhHhHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT--NAVVVEADAF-KETDVIYRALSSK---GHHDDMLQTAELVHQSS  283 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~--~avvIdaDef-Re~D~irk~L~~~---G~~~d~~~aa~~v~~~~  283 (400)
                      ...+.+++.|+||+||||+++.+++.+.  .+..  .++++-.|+= .+-..+.+.+...   ...+.+    ...|..+
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p----~~~~~~v  239 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEP----ASRHVQV  239 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCC----hHHHHHH
Confidence            4567799999999999999999999862  1111  2233434431 1222334444221   001111    1223333


Q ss_pred             HHHHHHHHHHHHhCCCcEEE
Q 015774          284 TDAASSLLVTALNEGRDVIM  303 (400)
Q Consensus       284 ~~~ae~lie~AL~eG~dVII  303 (400)
                      ...+...+++...+|++|||
T Consensus       240 a~~v~e~Ae~~~~~GkdVVL  259 (415)
T TIGR00767       240 AEMVIEKAKRLVEHKKDVVI  259 (415)
T ss_pred             HHHHHHHHHHHHHcCCCeEE
Confidence            44555567777788987765

Members of this family differ in the specificity of RNA binding.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.69  E-value=0.016  Score=53.51  Aligned_cols=43  Identities=30%  Similarity=0.328  Sum_probs=33.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -.+..++.+.|++||||||+.+.|+....   ...+-+.++...+.
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~   66 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIK   66 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccc
Confidence            35778999999999999999999998762   12345777765554

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.69  E-value=0.013  Score=55.32  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=24.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+..++.+.|++||||||+++.|+...
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467799999999999999999999876

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.69  E-value=0.013  Score=55.33  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.+.|++||||||+.+.|+..+.  . ..+-+.++...+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~-~~G~i~~~g~~~   67 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP--R-DAGNIIIDDEDI   67 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCcEEEECCEEC
Confidence            36788999999999999999999998762  1 234466665444

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=95.68  E-value=0.014  Score=54.36  Aligned_cols=41  Identities=15%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -++..++.|.|++||||||+.+.|+.....   ..+-+.++...
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~   67 (221)
T cd03244          27 IKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVD   67 (221)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEE
Confidence            357789999999999999999999977521   23446666543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.68  E-value=0.012  Score=56.89  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=30.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.|.|+|||||||+++.|+..+..   ..+-+.+++..
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~   74 (265)
T PRK10575         34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQP   74 (265)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEe
Confidence            357789999999999999999999987521   23445665543

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=95.68  E-value=0.013  Score=52.55  Aligned_cols=39  Identities=15%  Similarity=0.363  Sum_probs=33.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |.++++-.|+||||++..||..+  ...+.+++++|.|-.-
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~l--a~~g~~VlliD~D~~~   39 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQAL--ARKGKKVLLIDLDPQA   39 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEEESTTS
T ss_pred             CEEEcCCCCccHHHHHHHHHhcc--ccccccccccccCccc
Confidence            56889999999999999999998  5578899999998754

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=95.67  E-value=0.02  Score=57.60  Aligned_cols=51  Identities=12%  Similarity=0.195  Sum_probs=44.6

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .|+.+.+.+.++..+...+..                      .+-|..+|+.|++|+||+|+|..+++.+.+
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~----------------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc   52 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQ----------------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLS   52 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHh----------------------CCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            588899999999988888776                      456889999999999999999999999754

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=95.67  E-value=0.011  Score=55.57  Aligned_cols=39  Identities=18%  Similarity=0.335  Sum_probs=33.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +++++|.+|+||||++..++..+  .+.+..+.+++.|--+
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~--a~~g~~~~l~~~d~~~   39 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRL--AEEGKKVLLVSTDPAH   39 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHH--HHCCCcEEEEECCCCc
Confidence            47899999999999999999988  5567789999998665

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.66  E-value=0.053  Score=61.42  Aligned_cols=59  Identities=10%  Similarity=0.175  Sum_probs=40.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774          155 KDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       155 ~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~  234 (400)
                      =..+.+..|+.+++.+++.+..       ++.+-.|+.                .+..--+++.|+||+||||++..|+.
T Consensus       165 ~~~l~~~~r~~~l~~vigr~~e-------i~~~i~iL~----------------r~~~~n~lL~G~pGvGKT~l~~~la~  221 (857)
T PRK10865        165 TIDLTERAEQGKLDPVIGRDEE-------IRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQ  221 (857)
T ss_pred             hhhHHHHHhcCCCCcCCCCHHH-------HHHHHHHHh----------------cCCcCceEEECCCCCCHHHHHHHHHH
Confidence            3455667788888888776552       333333331                12222456789999999999999999


Q ss_pred             hc
Q 015774          235 ES  236 (400)
Q Consensus       235 ~l  236 (400)
                      +.
T Consensus       222 ~i  223 (857)
T PRK10865        222 RI  223 (857)
T ss_pred             Hh
Confidence            87

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.66  E-value=0.014  Score=54.34  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=31.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..++.+.|++||||||+++.|+..+.  . ..+-+.++...+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~-~~G~i~~~g~~~   62 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFIE--P-ASGSIKVNDQSH   62 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCC--C-CCcEEEECCEEc
Confidence            5788999999999999999999998762  1 234466765444

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR02012 tigrfam_recA protein RecA

Probab=95.66  E-value=0.014  Score=59.11  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...++++.|+|||||||++..++...  ...+..+++||+..-
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~   94 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHA   94 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccch
Confidence            566799999999999999999987765  334667889987653

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=95.66  E-value=0.013  Score=51.77  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.++++-.|+||||++..|+..+  ...+.++++||.|-.
T Consensus         2 i~v~~~kgG~GKtt~a~~la~~l--~~~g~~vllvD~D~~   39 (179)
T cd02036           2 IVVTSGKGGVGKTTTTANLGTAL--AQLGYKVVLIDADLG   39 (179)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH--HhCCCeEEEEeCCCC
Confidence            56888999999999999999988  566788999999975

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.65  E-value=0.009  Score=55.35  Aligned_cols=39  Identities=31%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      -++..++.+.|++||||||+++.|+..+.   ...+-+.++.
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g   60 (213)
T cd03235          22 VKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFG   60 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECC
Confidence            46778999999999999999999998752   1234455654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=95.64  E-value=0.014  Score=55.88  Aligned_cols=42  Identities=19%  Similarity=0.393  Sum_probs=32.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ....+++++|+||+||||++..++...- .+.+.++++++.++
T Consensus        28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~   69 (271)
T cd01122          28 RKGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE   69 (271)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc
Confidence            4566999999999999999999887751 11255788898765

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK09183 transposase/IS protein; Provisional

Probab=95.64  E-value=0.0091  Score=58.19  Aligned_cols=39  Identities=18%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      ....+++.|+||+|||+++..|+...  ...+..+.+++..
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a--~~~G~~v~~~~~~  139 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEA--VRAGIKVRFTTAA  139 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEeHH
Confidence            34567899999999999999998765  1234466666643

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=95.64  E-value=0.014  Score=56.46  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=28.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .++++.||+|+|||.+|-.||+++|+       .+|+.|-+-
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq   36 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQ   36 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGG
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCC-------CEEEeccee
Confidence            47899999999999999999999976       688888775

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.64  E-value=0.017  Score=52.09  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.+.|++||||||+.+.|+..+..   ..+-+.++...+
T Consensus        25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~   66 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDL   66 (171)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEh
Confidence            467789999999999999999999988632   234566766444

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.63  E-value=0.017  Score=52.13  Aligned_cols=42  Identities=21%  Similarity=0.200  Sum_probs=31.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.+.|++||||||+.+.|+..+.   ...+.+.++...+
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~   66 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADI   66 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEc
Confidence            35678999999999999999999998762   1235566765443

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=95.63  E-value=0.018  Score=62.75  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=23.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...++++.||||+||||+++.|++.+
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHH
Confidence            44599999999999999999999987

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.62  E-value=0.01  Score=55.93  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=34.2

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ..+...-++..++.+.|++||||||+++.|+..+.   ...+.+.+++..+
T Consensus        26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i   73 (233)
T PRK11629         26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPM   73 (233)
T ss_pred             EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEc
Confidence            33333346778999999999999999999998752   1235566765444

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.62  E-value=0.01  Score=54.49  Aligned_cols=41  Identities=22%  Similarity=0.150  Sum_probs=31.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.+.|+|||||||+.+.|+..+.  . ..+-+.++.-.
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~-~~G~i~~~g~~   61 (206)
T TIGR03608        21 IEKGKMYAIIGESGSGKSTLLNIIGLLEK--F-DSGQVYLNGKE   61 (206)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCC--C-CCeEEEECCEE
Confidence            35678999999999999999999998762  1 23446666544

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=95.62  E-value=0.011  Score=52.67  Aligned_cols=28  Identities=39%  Similarity=0.355  Sum_probs=24.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .|-+.++.|++|+||||++..|.--++.
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~   45 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIRYALGG   45 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5679999999999999999999877754

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=95.62  E-value=0.014  Score=55.05  Aligned_cols=40  Identities=18%  Similarity=0.184  Sum_probs=30.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      -+++.++.|.|++||||||+++.|+..+.  . ..+-+.++..
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~-~~G~i~~~g~   65 (238)
T cd03249          26 IPPGKTVALVGSSGCGKSTVVSLLERFYD--P-TSGEILLDGV   65 (238)
T ss_pred             ecCCCEEEEEeCCCCCHHHHHHHHhccCC--C-CCCEEEECCE
Confidence            46788999999999999999999998762  1 2344666553

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.61  E-value=0.01  Score=55.69  Aligned_cols=27  Identities=15%  Similarity=0.082  Sum_probs=24.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++..++.+.|+|||||||+.+.|+...
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            567899999999999999999999875

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=95.61  E-value=0.03  Score=58.54  Aligned_cols=90  Identities=17%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC--CeEEEeCCccc-cchHHHHHHhcCCCCChhhHhHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT--NAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~--~avvIdaDefR-e~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      ..+=.++.|+||+||||+++.+++...  ....  .++++-.|++. +-..+.+.+.+.-....+...+ ..|..+...+
T Consensus       168 kGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~-~~~~~~a~~~  244 (416)
T PRK09376        168 KGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPA-ERHVQVAEMV  244 (416)
T ss_pred             cCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCH-HHHHHHHHHH
Confidence            344567789999999999999998762  1111  23445566652 2223344443220000011111 1233333344


Q ss_pred             HHHHHHHHhCCCcEEE
Q 015774          288 SSLLVTALNEGRDVIM  303 (400)
Q Consensus       288 e~lie~AL~eG~dVII  303 (400)
                      -..+++....|.+|||
T Consensus       245 ie~Ae~~~e~G~dVlL  260 (416)
T PRK09376        245 IEKAKRLVEHGKDVVI  260 (416)
T ss_pred             HHHHHHHHHcCCCEEE
Confidence            4566666678887664

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.61  E-value=0.011  Score=53.62  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.+.|++||||||+++.|+..+.   ...+-+.++...+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~   64 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDL   64 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEc
Confidence            35778999999999999999999997752   1234466765444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=95.61  E-value=0.012  Score=61.46  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      +.-||+.||||+|||++|+.|+..+++     +...+++-
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~-----pf~~~da~  150 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNV-----PFAIADAT  150 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCC-----CeEEechh
Confidence            457899999999999999999999864     44555543

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=95.61  E-value=0.035  Score=49.34  Aligned_cols=53  Identities=21%  Similarity=0.258  Sum_probs=38.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .+.+...+.+++...+....+         .       ...++|.++-+-|+||+|||.+++.||+.+.
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~---------~-------~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly   78 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLA---------N-------PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY   78 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHc---------C-------CCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence            345566666666666665322         0       1257899999999999999999999999963

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.60  E-value=0.01  Score=60.47  Aligned_cols=48  Identities=17%  Similarity=0.244  Sum_probs=36.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI  259 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~i  259 (400)
                      -+...++.+.||+||||||+.+.||.-..   -..+-+.|+..+.-...|.
T Consensus        26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~   73 (338)
T COG3839          26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE   73 (338)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            45678999999999999999999997653   2456688887776653343

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.60  E-value=0.019  Score=53.72  Aligned_cols=42  Identities=14%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...++++.|.||+|||+++..++...  -.++..+++++.++-
T Consensus        14 ~~g~~~li~G~~G~GKt~~~~~~~~~~--~~~g~~~~y~s~e~~   55 (224)
T TIGR03880        14 PEGHVIVVIGEYGTGKTTFSLQFLYQG--LKNGEKAMYISLEER   55 (224)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCC
Confidence            457799999999999999999988653  123567888988764

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.59  E-value=0.0099  Score=54.89  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~  234 (400)
                      ++...-.+..++.+.|+|||||||+.+.++.
T Consensus        13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            3333346788999999999999999999863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd04163 Era Era subfamily

Probab=95.59  E-value=0.011  Score=50.16  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ...|.+.|.+||||||++..+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.58  E-value=0.016  Score=55.45  Aligned_cols=28  Identities=39%  Similarity=0.466  Sum_probs=24.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -++...++++|++||||||+.+.|....
T Consensus        25 i~~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          25 IPKGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             ecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence            3567899999999999999999998875

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=95.57  E-value=0.028  Score=62.86  Aligned_cols=54  Identities=19%  Similarity=0.388  Sum_probs=42.1

Q ss_pred             CCCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc
Q 015774          210 RSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS  265 (400)
Q Consensus       210 ~~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~  265 (400)
                      ++|. .+|+.||+|+|||.+|++||..++-  .....+.||-.+|.+.+..-+-+.+
T Consensus       518 ~rPigsFlF~GPTGVGKTELAkaLA~~Lfg--~e~aliR~DMSEy~EkHsVSrLIGa  572 (786)
T COG0542         518 NRPIGSFLFLGPTGVGKTELAKALAEALFG--DEQALIRIDMSEYMEKHSVSRLIGA  572 (786)
T ss_pred             CCCceEEEeeCCCcccHHHHHHHHHHHhcC--CCccceeechHHHHHHHHHHHHhCC
Confidence            4454 7888999999999999999999852  3356788998888887776554533

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.57  E-value=0.014  Score=56.07  Aligned_cols=41  Identities=27%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -++..++.+.|++||||||+.+.|+..+..   ..+-+.++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~   65 (258)
T PRK13548         25 LRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRP   65 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEE
Confidence            457789999999999999999999987521   23445565543

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.54  E-value=0.017  Score=55.35  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=31.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -.+..++.+.|+|||||||+++.|+..+.   ...+-+.++...
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~   69 (258)
T PRK11701         29 LYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRD   69 (258)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcc
Confidence            46788999999999999999999998762   123446666544

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=95.54  E-value=0.016  Score=57.38  Aligned_cols=43  Identities=26%  Similarity=0.256  Sum_probs=31.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC-Cccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA-DAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda-DefR  254 (400)
                      -++..++.+.|+|||||||+.+.|+....  .. .+-+.+++ |..+
T Consensus        28 i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~-~G~i~i~G~~~~~   71 (293)
T COG1131          28 VEPGEIFGLLGPNGAGKTTLLKILAGLLK--PT-SGEILVLGYDVVK   71 (293)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCcC--CC-ceEEEEcCEeCcc
Confidence            46778999999999999999999998872  22 33455554 4433

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.54  E-value=0.011  Score=55.67  Aligned_cols=44  Identities=18%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.|.|+|||||||+.+.|+..+..+ ...+.+.++...+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~   66 (243)
T TIGR01978        23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-VTSGTILFKGQDL   66 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCcceEEECCEec
Confidence            3577899999999999999999999863101 1235566766444

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR00416 sms DNA repair protein RadA

Probab=95.54  E-value=0.018  Score=60.69  Aligned_cols=43  Identities=26%  Similarity=0.362  Sum_probs=35.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+..+++++|.||+||||++..++...  ...+.++++++.++-.
T Consensus        92 ~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs~  134 (454)
T TIGR00416        92 VPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEESL  134 (454)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCCH
Confidence            467799999999999999999998876  3345578889887654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	400
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	3e-14
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	4e-07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	7e-07
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-06
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	3e-05

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 71.5 bits (174), Expect = 3e-14
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259
             +     S + P+ +L+GG  GAGK+T+ +   KE        N V+++ D+F+     
Sbjct: 20  RSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE-----FQGNIVIIDGDSFRSQHPH 74

Query: 260 YRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319
           Y  L  +   D      E     +     SL+    + G +++++GTL  V   ++T  +
Sbjct: 75  YLELQQEYGKDS----VEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQL 130

Query: 320 ARN 322
            +N
Sbjct: 131 LKN 133

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 62.7 bits (151), Expect = 3e-11
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259
           + ++    +  SP   L+GG  G+GK+++   I +E        N +V++ D FK+    
Sbjct: 21  EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE-----TQGNVIVIDNDTFKQQHPN 75

Query: 260 YRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319
           +  L      D      + V   S     +++    ++G +++++GT        QT  M
Sbjct: 76  FDELVKLYEKDV----VKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM 131

Query: 320 ARN 322
            + 
Sbjct: 132 LQA 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 60/219 (27%)

Query: 34  QKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQ--LCKLAYEYLK 91
            +Y+Y    +DI  +            + F           D  + P+  L K   +++ 
Sbjct: 14  HQYQY----KDILSV----------FEDAF----VDNFDCKDVQDMPKSILSKEEIDHII 55

Query: 92  KSKGCEDNIYEYFSK-EAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEK 150
            SK         F    ++ E +  K VEE  R  ++Y    +     ++S + + + + 
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INY---KF-----LMSPIKTEQRQP 105

Query: 151 KTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSER 210
               + +I    R     +V     + R+     +    +R+             AL E 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRL-----QPYLKLRQ-------------ALLEL 147

Query: 211 SPVLLLMGGGM-GAGKST----VLKDIMKES------FW 238
            P   ++  G+ G+GK+     V      +       FW
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 48.9 bits (116), Expect = 4e-07
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 29/164 (17%)

Query: 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG 267
            +    +LL+ G  G+GKST+ + +             V   +D               G
Sbjct: 5   DDLGGNILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHSDDL-------WGYIKHG 52

Query: 268 HHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH--- 324
             D  L  +   ++     A+ +      EG  VI+DG +    ++    A+AR +H   
Sbjct: 53  RIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVR-PDWLPAFTALARPLHYIV 111

Query: 325 ----------KSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQ 358
                     +   R G       D  V+ +   Q  +      
Sbjct: 112 LRTTAAEAIERCLDRGGDSLS---DPLVVADLHSQFADLGAFEH 152

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 30/200 (15%), Positives = 63/200 (31%), Gaps = 35/200 (17%)

Query: 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD 271
             ++L  G  G+GKST  ++ + ++           +  D ++++ + +       +   
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYRQSIMAHEERDEYKYTKK 55

Query: 272 MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH------- 324
                 +V     D A S+L    +  + VI+  T             A+          
Sbjct: 56  KEG---IVTGMQFDTAKSIL-YGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKV 111

Query: 325 --------KSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELV 376
                     R        V  D  V+ + ++         ++     V++  P + + V
Sbjct: 112 FDVPWTELVKRNSKRGTKAVPID--VLRSMYKS-------MREYLGLPVYNGTPGKPKAV 162

Query: 377 GVVCDAYLAVVRGIRYAYQY 396
               D  LA + G R  Y  
Sbjct: 163 IFDVDGTLAKMNG-RGPYDL 181

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD 270
           +P L+++ G    GK+T+ + +              ++  DAFKE        S +    
Sbjct: 4   TPALIIVTGHPATGKTTLSQALATG-------LRLPLLSKDAFKEVMFDGLGWSDREWSR 56

Query: 271 DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 324
            +  TA                T L  G+ +IM+         E+   +     
Sbjct: 57  RVGATAI-------MMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAP 103

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 10/113 (8%)

Query: 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD 271
             ++L  G  G+GKST  ++ + ++           +  D ++++ + +       +   
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYRQSIMAHEERDEYKYTKK 55

Query: 272 MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 324
                 +V     D A S+L    +  + VI+  T             A+   
Sbjct: 56  KEG---IVTGMQFDTAKSIL-YGGDSVKGVIISDTNLNPERRLAWETFAKEYG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	400
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.43
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.42
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.39
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.35
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.33
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.19
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.12
2og2_A	359	Putative signal recognition particle receptor; nuc	99.11
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.1
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.04
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.03
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.98
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.96
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.95
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.93
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.92
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.92
2xxa_A	433	Signal recognition particle protein; protein trans	98.91
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.84
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.83
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.81
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.8
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.79
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.79
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.77
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.72
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.69
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.64
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.62
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.6
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.58
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.57
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.56
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.56
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.48
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.46
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.46
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.45
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.44
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.42
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.42
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.41
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.4
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.38
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.37
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.37
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.36
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.34
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.33
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.33
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.32
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.32
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.31
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.31
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.3
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.3
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.29
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.29
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.27
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.23
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.21
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.21
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.2
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.2
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.2
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.19
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.19
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.18
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.18
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.18
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.18
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.17
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.16
1via_A	175	Shikimate kinase; structural genomics, transferase	98.16
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.11
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.07
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.07
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.06
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.03
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.03
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.02
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.02
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.99
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.99
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.94
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.93
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.92
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.9
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.89
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.87
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.87
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.86
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.86
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.85
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.85
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.84
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.84
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.83
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.82
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.81
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.81
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.78
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.77
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.77
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.77
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.75
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.73
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.7
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.7
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.68
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.68
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.68
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.67
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.67
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.65
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.65
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.65
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.63
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.63
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.62
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.62
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.61
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.61
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.61
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.61
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.6
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.59
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.59
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.59
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.58
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.58
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.57
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.57
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.57
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.57
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.56
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.56
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.55
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.54
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.54
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.54
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.53
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.53
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.52
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.49
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.48
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.48
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.48
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.46
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.46
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.44
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.44
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.44
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.42
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.42
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.41
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.4
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.39
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.39
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.38
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.36
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.35
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.33
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.32
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.31
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.3
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.3
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.29
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.29
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.28
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.27
3pvs_A	447	Replication-associated recombination protein A; ma	97.27
3bos_A	242	Putative DNA replication factor; P-loop containing	97.24
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.23
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.23
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.21
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.2
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.19
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.18
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.17
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.11
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.09
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.08
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.03
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.01
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.01
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.98
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.96
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.96
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.96
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.91
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.89
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.89
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.87
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.87
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.86
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.85
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.84
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.8
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.8
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.78
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.77
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.76
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.75
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.74
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.74
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.74
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.71
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.66
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.65
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.65
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.63
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.63
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.58
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.58
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.58
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.54
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.5
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.49
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.45
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.44
2qgz_A	308	Helicase loader, putative primosome component; str	96.41
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.4
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.38
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.37
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.35
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.35
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.34
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.32
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.32
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.29
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.1
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	96.04
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.04
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.03
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.01
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.99
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.99
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.98
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.96
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.93
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	95.93
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.92
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.91
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.91
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.9
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.89
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.88
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.88
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.88
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	95.86
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.86
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.86
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	95.85
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.83
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.82
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.82
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.81
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.81
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.8
3end_A	307	Light-independent protochlorophyllide reductase ir	95.78
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.76
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.76
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.76
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.75
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.75
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.74
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.73
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.72
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.71
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.7
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	95.68
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.67
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.67
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.67
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	95.64
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.63
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.62
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.62
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.61
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.59
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.59
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.57
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.57
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.55
3co5_A	143	Putative two-component system transcriptional RES	95.53
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	95.53
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.52
1g6h_A	257	High-affinity branched-chain amino acid transport	95.52
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.51
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	95.5
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.5
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.5
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.49
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.48
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	95.48
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.46
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	95.45
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.45
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.45
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.45
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.44
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.44
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.43
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.42
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.4
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.4
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.39
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.39
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.39
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	95.38
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.35
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.32
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.32
2fna_A	357	Conserved hypothetical protein; structural genomic	95.29
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.29
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	95.29
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.28
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.28
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	95.26
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.25
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.22
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.19
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.13
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.12
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	95.1
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	94.98
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	94.97
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.94
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	94.91
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.91
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.9
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	94.89
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	94.89
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.88
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	94.84
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	94.84
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	94.83
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.82
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.8
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.8
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.79
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.78
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.75
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.75
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.74
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.74
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.73
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.7
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.66
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.65
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.65
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.63
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.59
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.57
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.55
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.54
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.54
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.53
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.53
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.52
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.52
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.5
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.49
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.48
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.47
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.46
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.45
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	94.45
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.45
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.44
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.41
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.41
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.41
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.36
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.34
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.33
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.3
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.28
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.23
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.23
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.22
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.19
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.19
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.18
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.17
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.14
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.14
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.14
3io5_A	333	Recombination and repair protein; storage dimer, i	94.09
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.08
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.08
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.08
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.03
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.02
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.97
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	93.95
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.9
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.88
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	93.88
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.86
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.86
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	93.83
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.81
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.81
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.8
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	93.78
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.77
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.76
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	93.76
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.76
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.74
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.73
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.7
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.7
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	93.69
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.66
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.66
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	93.66
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.66
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.65
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.63
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.6
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.56
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	93.56
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.56
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	93.52
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.52
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	93.5
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	93.48
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	93.47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.45
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.45
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	93.42
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.41
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	93.4
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.36
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.3
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.28
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	93.27
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.23
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	93.22
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.21
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	93.16
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	93.14
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.12
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	93.11
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	93.09
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	93.07
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	93.07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.03
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	93.0
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	92.99
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.93
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	92.92
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.92
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.89
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.87
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.85
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	92.85
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	92.83
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	92.83
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	92.83
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	92.8
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	92.79
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.71
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.67
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.67
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.67
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	92.66
3ice_A	422	Transcription termination factor RHO; transcriptio	92.6
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.6
1e69_A	322	Chromosome segregation SMC protein; structural mai	92.6
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	92.55
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	92.54
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	92.51
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.48
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.48
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.47
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	92.42
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.4
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	92.4
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	92.37
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.36
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	92.35
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	92.33
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	92.31
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	92.29
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	92.28
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.25
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	92.24
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	92.24

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.43  E-value=3.9e-12  Score=132.54  Aligned_cols=198  Identities=16%  Similarity=0.238  Sum_probs=128.5

Q ss_pred             hHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHH
Q 015774           81 QLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMA  160 (400)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  160 (400)
                      -|.+|..++.|+.+++.+.|.++|++.+    |+.++++||++              .||.+|+|.+..      ..+++
T Consensus       195 ~~~~l~~~l~kt~~~l~~~l~~~~~~~~----ide~~l~el~~--------------~Ll~aDv~~~~~------~~l~~  250 (503)
T 2yhs_A          195 FFARLKRSLLKTKENLGSGFISLFRGKK----IDDDLFEELEE--------------QLLIADVGVETT------RKIIT  250 (503)
T ss_dssp             HHHHHHHHTHHHHTTSTTHHHHHHTTCB----CSHHHHHHHHH--------------HHHHTTCCHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCC----CCHHHHHHHHH--------------HHHHcCCCHHHH------HHHHH
Confidence            4678999999999999999999998655    88999999999              999999999988      66666


Q ss_pred             Hhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc
Q 015774          161 ATRKQRFEK-VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS  239 (400)
Q Consensus       161 ~~r~~rf~~-v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~  239 (400)
                      .++++-..+ +.....+...+...+.+   +..       ....++......+.+|.|.|++||||||+++.|+..+  .
T Consensus       251 ~l~~~~~~~~~~~~~~~~~~l~~~l~~---~l~-------~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll--~  318 (503)
T 2yhs_A          251 NLTEGASRKQLRDAEALYGLLKEEMGE---ILA-------KVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF--E  318 (503)
T ss_dssp             HHHHHHHHHTCCBGGGHHHHHHHHHHH---HHH-------TTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH--H
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHH---HhC-------CCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh--h
Confidence            666543322 22333444444444443   332       1122333335679999999999999999999999887  3


Q ss_pred             CCCCCeEEEeCCccccchH--H--HHHHhcCCC--CChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHH
Q 015774          240 GAATNAVVVEADAFKETDV--I--YRALSSKGH--HDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFV  313 (400)
Q Consensus       240 ~~~~~avvIdaDefRe~D~--i--rk~L~~~G~--~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~r  313 (400)
                      ..++.+.+.+.|.++....  +  +......+.  ..........        +...+..++..|+++||-+|.++....
T Consensus       319 ~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t--------V~e~l~~a~~~~~DvVLIDTaGrl~~~  390 (503)
T 2yhs_A          319 QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV--------IFDAIQAAKARNIDVLIADTAGRLQNK  390 (503)
T ss_dssp             HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH--------HHHHHHHHHHTTCSEEEECCCCSCCCH
T ss_pred             hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH--------HHHHHHHHHhcCCCEEEEeCCCccchh
Confidence            3455666667998874211  1  101111111  0111111111        222344466789999999998886665


Q ss_pred             HHHHHHHHh
Q 015774          314 EQTIAMARN  322 (400)
Q Consensus       314 e~~i~~ark  322 (400)
                      ..++..+++
T Consensus       391 ~~lm~EL~k  399 (503)
T 2yhs_A          391 SHLMEELKK  399 (503)
T ss_dssp             HHHHHHHHH
T ss_pred             hhHHHHHHH
Confidence            566555443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.42  E-value=4.2e-12  Score=124.30  Aligned_cols=189  Identities=18%  Similarity=0.241  Sum_probs=126.7

Q ss_pred             hHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHH
Q 015774           81 QLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMA  160 (400)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  160 (400)
                      -+.||..++.|+.+++.+.|..+|.+.+    |+++.++||++              .||.+|++.+.+      ..+++
T Consensus        15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~   70 (306)
T 1vma_A           15 LFDFLKKGLQKTKETFFGRVVKLLKGKK----LDDETREELEE--------------LLIQADVGVETT------EYILE   70 (306)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHTTCC----CCHHHHHHHHH--------------HHHHTTCCHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHH--------------HHHHCCCCHHHH------HHHHH
Confidence            3679999999999999999999997444    88899999999              999999999988      77777


Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      ..++      .... +...+.+.+.+   +..       .. .|+......|.+|+|.|+|||||||++..|+..+  ..
T Consensus        71 ~~~~------~~~~-~~~~~~~~l~~---~l~-------~~-~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~  130 (306)
T 1vma_A           71 RLEE------KDGD-ALESLKEIILE---ILN-------FD-TKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF--VD  130 (306)
T ss_dssp             HHTT------CCSC-HHHHHHHHHHH---HTC-------SC-CCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH--HH
T ss_pred             HHHh------cCHH-HHHHHHHHHHH---HhC-------CC-CCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH--Hh
Confidence            7776      1112 44444443333   431       00 1343335678999999999999999999999987  44


Q ss_pred             CCCCeEEEeCCccccchHHHHHH---hcC-CC---C-ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHH
Q 015774          241 AATNAVVVEADAFKETDVIYRAL---SSK-GH---H-DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPF  312 (400)
Q Consensus       241 ~~~~avvIdaDefRe~D~irk~L---~~~-G~---~-~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~  312 (400)
                      .+..+.+++.|.+|....  +++   ... +.   + .......        ..+...+..++..++++||-+|......
T Consensus       131 ~g~kV~lv~~D~~r~~a~--eqL~~~~~~~gl~~~~~~s~~~~~--------~v~~~al~~a~~~~~dvvIiDtpg~~~~  200 (306)
T 1vma_A          131 EGKSVVLAAADTFRAAAI--EQLKIWGERVGATVISHSEGADPA--------AVAFDAVAHALARNKDVVIIDTAGRLHT  200 (306)
T ss_dssp             TTCCEEEEEECTTCHHHH--HHHHHHHHHHTCEEECCSTTCCHH--------HHHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred             cCCEEEEEccccccHHHH--HHHHHHHHHcCCcEEecCCccCHH--------HHHHHHHHHHHhcCCCEEEEECCCchhh
Confidence            567889999999984221  111   100 10   0 0000111        1112234557788898777767776666


Q ss_pred             HHHHHHHHHhh
Q 015774          313 VEQTIAMARNV  323 (400)
Q Consensus       313 re~~i~~arkv  323 (400)
                      .+.++..++++
T Consensus       201 ~~~l~~eL~~l  211 (306)
T 1vma_A          201 KKNLMEELRKV  211 (306)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.39  E-value=1.6e-11  Score=120.66  Aligned_cols=198  Identities=13%  Similarity=0.141  Sum_probs=126.2

Q ss_pred             HHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhh
Q 015774           85 LAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRK  164 (400)
Q Consensus        85 l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~  164 (400)
                      +-.++.|+++++.+.|..+|++...   ++++.++|||+              .||.+|++.+.+      ..+++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~~~   63 (320)
T 1zu4_A            7 MEKAMLKSAFNFSKDIKKLSKKYKQ---ADDEFFEELED--------------VLIQTDMGMKMV------LKVSNLVRK   63 (320)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHTCCC---CSHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCC---CCHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHH
Confidence            5678889999999999999987432   88899999999              999999999988      777777776


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      +-...-+.+. +...+.+   ++..+.....  ...+..++......|.+|.|+|++|+||||++..|+..+  ...+..
T Consensus        64 ~~~~~~~~~~-~~~~~~~---~l~~~l~~~~--~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l--~~~g~k  135 (320)
T 1zu4_A           64 KTKRDTSFEN-IKDALVE---SLYQAYTDND--WTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY--AELGYK  135 (320)
T ss_dssp             HCCTTCCHHH-HHHHHHH---HHHHHHHCSC--C----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCC
T ss_pred             HHhhchhHHH-HHHHHHH---HHHHHhCccc--ccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCe
Confidence            4333323332 3333333   3333442110  000002343335678999999999999999999999987  445778


Q ss_pred             eEEEeCCccccchH-HHHHHhc---C-C-----CCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHH
Q 015774          245 AVVVEADAFKETDV-IYRALSS---K-G-----HHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVE  314 (400)
Q Consensus       245 avvIdaDefRe~D~-irk~L~~---~-G-----~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re  314 (400)
                      +.+++.|.++.... ....+..   . +     ..........        .+...+..++.+++|+||-+|.+.....+
T Consensus       136 Vllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~--------~~~~~l~~~~~~~yD~VIIDTpg~l~~~~  207 (320)
T 1zu4_A          136 VLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPAS--------VVFDAIKKAKEQNYDLLLIDTAGRLQNKT  207 (320)
T ss_dssp             EEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHH--------HHHHHHHHHHHTTCSEEEEECCCCGGGHH
T ss_pred             EEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHH--------HHHHHHHHHHhcCCCEEEEcCCCcccccH
Confidence            99999999884311 1111211   1 1     0000011111        11223445678999999999988877655


Q ss_pred             HHHHHHH
Q 015774          315 QTIAMAR  321 (400)
Q Consensus       315 ~~i~~ar  321 (400)
                      ..+..+.
T Consensus       208 ~l~~eL~  214 (320)
T 1zu4_A          208 NLMAELE  214 (320)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.35  E-value=1.3e-11  Score=118.87  Aligned_cols=105  Identities=23%  Similarity=0.363  Sum_probs=73.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ...|.+|+|+|+|||||||+++.|+++++     .+.++||+|++|...+-+..+...    ...+..............
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~D~~R~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~~  100 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDNDTFKQQHPNFDELVKL----YEKDVVKHVTPYSNRMTE  100 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECTHHHHTTSTTHHHHHHH----HGGGCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechHhHHhchhhHHHHHH----ccchhhhhhhHHHHHHHH
Confidence            45789999999999999999999999872     256999999998644433322211    000111111122233455


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .++..++++|.+||+|+++.....+.+++..+++
T Consensus       101 ~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~  134 (287)
T 1gvn_B          101 AIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQA  134 (287)
T ss_dssp             HHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHh
Confidence            6778889999999999999998877788777754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.33  E-value=3.5e-11  Score=112.81  Aligned_cols=104  Identities=27%  Similarity=0.471  Sum_probs=74.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      ...|.+|+|+|+|||||||+++.|++.++     .+.+++++|.+|...+-+..+... |... .    .........++
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~r~~~~~~~~i~~~~g~~~-~----~~~~~~~~~~~   98 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSFRSQHPHYLELQQEYGKDS-V----EYTKDFAGKMV   98 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGGGTTSTTHHHHHTTCSSTT-H----HHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHHHHhchhHHHHHHHcCchH-H----HHhhHHHHHHH
Confidence            46789999999999999999999999984     256899999998654433334332 2111 1    11111123344


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ..++..+++.|.+||+|+++.....+..++..+++
T Consensus        99 ~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~  133 (253)
T 2p5t_B           99 ESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKN  133 (253)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHH
Confidence            56777788899999999999988777788777754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.19  E-value=1.2e-10  Score=113.52  Aligned_cols=138  Identities=16%  Similarity=0.220  Sum_probs=97.4

Q ss_pred             HHHHHHhhccccchhhHHHhhhcCCCcchhH-HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHh
Q 015774           84 KLAYEYLKKSKGCEDNIYEYFSKEAEPESLY-VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAAT  162 (400)
Q Consensus        84 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      +|..++-|+.+++. .|.++|.+...   ++ ++.++|||+              .||.+|++.+..      ..+++..
T Consensus         2 ~~~~~l~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~   57 (302)
T 3b9q_A            2 KVFSGFSKTRENLA-VIDELLLFWNL---AETDRVLDELEE--------------ALLVSDFGPKIT------VRIVERL   57 (302)
T ss_dssp             HHHHHTHHHHHHHT-HHHHHHTTCCG---GGHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHH
T ss_pred             hHHHHHHHHHHHHH-HHHHHHcCCCc---CCHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHH
Confidence            68889999999999 99999975432   77 899999999              999999999988      6667766


Q ss_pred             hhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC
Q 015774          163 RKQRFEK-VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA  241 (400)
Q Consensus       163 r~~rf~~-v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~  241 (400)
                      +++-... +.....+...+...+.+   +...     .....|+......|.++.|.|++||||||+++.|+..+  ...
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~l~~---~l~~-----~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l--~~~  127 (302)
T 3b9q_A           58 REDIMSGKLKSGSEIKDALKESVLE---MLAK-----KNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL--KNE  127 (302)
T ss_dssp             HHHHHTTSCCSHHHHHHHHHHHHHH---HHCC-------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH--HHT
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHH---HhCC-----cccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH--HHc
Confidence            6543222 22223344444433333   4310     00012444345679999999999999999999999987  334


Q ss_pred             CCCeEEEeCCcccc
Q 015774          242 ATNAVVVEADAFKE  255 (400)
Q Consensus       242 ~~~avvIdaDefRe  255 (400)
                      ++.+.+.+.|.++.
T Consensus       128 ~g~V~l~g~d~~r~  141 (302)
T 3b9q_A          128 GTKVLMAAGDTFRA  141 (302)
T ss_dssp             TCCEEEECCCCSCH
T ss_pred             CCeEEEEeecccch
Confidence            56777778888873

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.12  E-value=2.6e-10  Score=98.76  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=65.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHH-hccccCCCCCeEEEeCCccccchHHHHHHhcC--CCCChhhHhHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMK-ESFWSGAATNAVVVEADAFKETDVIYRALSSK--GHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~-~lg~~~~~~~avvIdaDefRe~D~irk~L~~~--G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      |.+|+|+|+|||||||+++.|++ .+       +..+|+.|.++      ..+.+.  +....+.....   ........
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~-------~~~~i~~d~~r------~~~~~~~~~~~~~~~~~~~---~~~~~~~~   65 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNP-------GFYNINRDDYR------QSIMAHEERDEYKYTKKKE---GIVTGMQF   65 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST-------TEEEECHHHHH------HHHTTSCCGGGCCCCHHHH---HHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcC-------CcEEecHHHHH------HHhhCCCccchhhhchhhh---hHHHHHHH
Confidence            68999999999999999999998 56       44899988776      334331  10000111111   11233445


Q ss_pred             HHHHHHH---hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL---~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .++..++   +.|.+||+|+++....+++.+..++++
T Consensus        66 ~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~  102 (181)
T 1ly1_A           66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE  102 (181)
T ss_dssp             HHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence            5777788   899999999999988888777766643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.11  E-value=5.1e-10  Score=112.04  Aligned_cols=141  Identities=16%  Similarity=0.207  Sum_probs=100.1

Q ss_pred             hHHHHHHHHhhccccchhhHHHhhhcCCCcchhH-HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHH
Q 015774           81 QLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLY-VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIM  159 (400)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~  159 (400)
                      -|.+|..++-++.+.+. ++..+|.+...   ++ .+.++||++              .||.+|++.+..      ..++
T Consensus        56 ~f~~l~~~l~~~~~~~~-~~~~l~~~~~~---~~~~~~~~~l~~--------------~Ll~adv~~~~~------~~~~  111 (359)
T 2og2_A           56 DVEKVFSGFSKTRENLA-VIDELLLFWNL---AETDRVLDELEE--------------ALLVSDFGPKIT------VRIV  111 (359)
T ss_dssp             HHHHHHHHTHHHHHHHT-HHHHHHTTCCG---GGHHHHHHHHHH--------------HHHHTTCCHHHH------HHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhcCCCc---CCHHHHHHHHHH--------------HHHHCCCCHHHH------HHHH
Confidence            56799999999988888 88888865443   77 999999999              999999999988      6677


Q ss_pred             HHhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          160 AATRKQRFEK-VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       160 ~~~r~~rf~~-v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +..+++-... +.....+...+.+.+.+   +...    ... ..|+....+.|.++.|.|++||||||+++.|+..+  
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~l~~----~~~-~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l--  181 (359)
T 2og2_A          112 ERLREDIMSGKLKSGSEIKDALKESVLE---MLAK----KNS-KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL--  181 (359)
T ss_dssp             HHHHHHHHTTSCCSHHHHHHHHHHHHHH---HHCC----C----CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH--
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHH---HhCC----ccc-CCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc--
Confidence            7776643322 22223334443333333   4410    000 02444445689999999999999999999999987  


Q ss_pred             cCCCCCeEEEeCCcccc
Q 015774          239 SGAATNAVVVEADAFKE  255 (400)
Q Consensus       239 ~~~~~~avvIdaDefRe  255 (400)
                      ...++.+.+.+.|.++.
T Consensus       182 ~~~~G~V~l~g~D~~r~  198 (359)
T 2og2_A          182 KNEGTKVLMAAGDTFRA  198 (359)
T ss_dssp             HHTTCCEEEECCCCSCH
T ss_pred             cccCCEEEEeccccccc
Confidence            33456777788898873

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.10  E-value=2.5e-09  Score=110.03  Aligned_cols=187  Identities=18%  Similarity=0.214  Sum_probs=107.8

Q ss_pred             chhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhh-hhhhhhh
Q 015774           96 CEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRF-EKVTKDL  174 (400)
Q Consensus        96 ~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf-~~v~~~~  174 (400)
                      +...+..+.++.+=.+.-..++++|+++              .||.+|.+.+..      ..+.+..++.-. +++....
T Consensus        10 l~~~~~~l~~~~~l~e~~~~~~l~ei~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~v~~~~   69 (443)
T 3dm5_A           10 LANTLKKIARASSVDEALIKELVRDIQR--------------ALIQADVNVRLV------LQLTREIQRRALEEKPPAGI   69 (443)
T ss_dssp             HHHHHHHHHHCSCCCHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHH--------------HHHHcCCChHHH------HHHHHHHHHHHhhccccccC
Confidence            4444555555555333445567889999              999999998877      444444444222 1222211


Q ss_pred             -HHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          175 -KMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       175 -~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                       ....++..+.+++..++..     ..  .++ ....+|.+|+++|+|||||||++..|+..+  ...+..+.++++|.+
T Consensus        70 ~~~~~v~~~l~~eL~~~L~~-----~~--~~~-~~~~~p~vIlivG~~G~GKTTt~~kLA~~l--~~~G~kVllv~~D~~  139 (443)
T 3dm5_A           70 SKKEHIIKIVYEELTKFLGT-----EA--KPI-EIKEKPTILLMVGIQGSGKTTTVAKLARYF--QKRGYKVGVVCSDTW  139 (443)
T ss_dssp             CHHHHHHHHHHHHHHHHTTS-----SC--CCC-CCCSSSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECCCS
T ss_pred             CcHHHHHHHHHHHHHHHhcC-----cc--ccc-ccCCCCeEEEEECcCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCc
Confidence             1223333334444444421     00  111 112368999999999999999999999987  556778999999999


Q ss_pred             ccchHHHHHHh---cC-CCC----ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          254 KETDVIYRALS---SK-GHH----DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       254 Re~D~irk~L~---~~-G~~----~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      |...  +++|.   .. +.+    .......        ..+...+..+..+|+++||-+|.+....-...+...++
T Consensus       140 R~aa--~eqL~~~~~~~gvpv~~~~~~~dp~--------~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~  206 (443)
T 3dm5_A          140 RPGA--YHQLRQLLDRYHIEVFGNPQEKDAI--------KLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQ  206 (443)
T ss_dssp             STHH--HHHHHHHHGGGTCEEECCTTCCCHH--------HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred             chhH--HHHHHHHHHhcCCcEEecCCCCCHH--------HHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHH
Confidence            9633  23332   11 110    0000111        12233456677789999888787765443444444433

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.04  E-value=1.7e-09  Score=109.15  Aligned_cols=79  Identities=29%  Similarity=0.373  Sum_probs=64.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ...|.+|+|+|+|||||||+++.|++.+++       .+|+.|+++.                +        .    ...
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~-------~~i~~D~~~~----------------~--------~----~~~  299 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGY-------VHVNRDTLGS----------------W--------Q----RCV  299 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTC-------EECCGGGSCS----------------H--------H----HHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCc-------EEEccchHHH----------------H--------H----HHH
Confidence            456899999999999999999999999865       8999998852                0        1    112


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ..+..++.+|.+||+|+|+.....+..++.++++
T Consensus       300 ~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~  333 (416)
T 3zvl_A          300 SSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKD  333 (416)
T ss_dssp             HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence            2455578899999999999999999988888765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.04  E-value=1e-09  Score=96.38  Aligned_cols=85  Identities=24%  Similarity=0.384  Sum_probs=57.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ..|.+|+|+|+|||||||+++.|++.+++       .+++.|.+++  .+...+.   ..+ . ..........+.....
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~-------~~i~~D~~~~--~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~   68 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRL-------PLLSKDAFKE--VMFDGLG---WSD-R-EWSRRVGATAIMMLYH   68 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEHHHHHH--HHHHHHC---CCS-H-HHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCC-------eEecHHHHHH--HHHHhcC---ccc-h-HHHHHhhHHHHHHHHH
Confidence            46889999999999999999999999965       6899888863  1222221   111 1 1111122223344455


Q ss_pred             HHHHHHhCCCcEEEECcCC
Q 015774          290 LLVTALNEGRDVIMDGTLS  308 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~  308 (400)
                      .+..+++.|.+||+|+++.
T Consensus        69 ~~~~~l~~g~~vi~d~~~~   87 (193)
T 2rhm_A           69 TAATILQSGQSLIMESNFR   87 (193)
T ss_dssp             HHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHhCCCeEEEecCCC
Confidence            6677888999999999983

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.03  E-value=1.4e-09  Score=107.27  Aligned_cols=149  Identities=15%  Similarity=0.205  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhccccchhhH------------HHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchh
Q 015774           82 LCKLAYEYLKKSKGCEDNI------------YEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESE  149 (400)
Q Consensus        82 ~~~l~~~~~~~~~~~~~~i------------~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~  149 (400)
                      |.+|...+-+..+...+.|            .+++++..-.+.-..++++|||+              .||++|+|.+..
T Consensus         8 f~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~Ll~adv~~~~~   73 (328)
T 3e70_C            8 FGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEI--------------DLLEADVALEVV   73 (328)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHH--------------HHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH
Confidence            5677777777666655543            44444433222233489999999              999999999988


Q ss_pred             hhhhHHHHHHHHhhhhhhhh-hhhhhHHHHHHHH-HHHHHHHHHhhCcCccccccc-cccccCCCCEEEEEEcCCCCcHH
Q 015774          150 KKTKLKDFIMAATRKQRFEK-VTKDLKMKRVFST-LVEEMKAIRREGESHCTDVMV-PAALSERSPVLLLMGGGMGAGKS  226 (400)
Q Consensus       150 ~~~~~~~~~~~~~r~~rf~~-v~~~~~vkr~~~~-liee~~~i~~~~~~~~~~v~~-pl~~~~~~P~lILL~G~PGSGKS  226 (400)
                            ..+++..+++-... +.........+.. +.+++..+....    ..+.. +......+|.++.|.|+||||||
T Consensus        74 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----~~~~~~~~~~~~~~g~vi~lvG~nGaGKT  143 (328)
T 3e70_C           74 ------DALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETS----RRIDLIEEIRKAEKPYVIMFVGFNGSGKT  143 (328)
T ss_dssp             ------HHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCS----SCCCHHHHHHSSCSSEEEEEECCTTSSHH
T ss_pred             ------HHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCc----cccchhhhcccCCCCeEEEEECCCCCCHH
Confidence                  66777777643322 2222222222222 233433344200    00100 01112467999999999999999


Q ss_pred             HHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774          227 TVLKDIMKESFWSGAATNAVVVEADAFKET  256 (400)
Q Consensus       227 TlAk~LA~~lg~~~~~~~avvIdaDefRe~  256 (400)
                      |+++.|+..+  ...++.+.+.+.|.++..
T Consensus       144 Tll~~Lag~l--~~~~g~V~l~g~D~~r~~  171 (328)
T 3e70_C          144 TTIAKLANWL--KNHGFSVVIAASDTFRAG  171 (328)
T ss_dssp             HHHHHHHHHH--HHTTCCEEEEEECCSSTT
T ss_pred             HHHHHHHHHH--HhcCCEEEEEeecccccc
Confidence            9999999887  445667888899998854

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.98  E-value=3.5e-09  Score=103.30  Aligned_cols=131  Identities=15%  Similarity=0.220  Sum_probs=71.5

Q ss_pred             HHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHH
Q 015774           82 LCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAA  161 (400)
Q Consensus        82 ~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      |.+|..++-++.+++...+.  |++ .    + .+.++|||+              .||.+|++.+..      ..+++.
T Consensus         4 ~~~l~~~l~~~~~~~~~~~~--~~~-~----~-~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~   55 (304)
T 1rj9_A            4 FDRLKAGLAKTRERLLKAIP--WGG-N----L-EEVLEELEM--------------ALLAADVGLSAT------EEILQE   55 (304)
T ss_dssp             --------------------------C----H-HHHHHHHHH--------------HHHHTTCCHHHH------HHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccc--cch-h----h-HHHHHHHHH--------------HHHHcCCCHHHH------HHHHHH
Confidence            45788888888888877776  454 3    7 899999999              999999999988      677777


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccc--cccccc-------cCCCCEEEEEEcCCCCcHHHHHHHH
Q 015774          162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDV--MVPAAL-------SERSPVLLLMGGGMGAGKSTVLKDI  232 (400)
Q Consensus       162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v--~~pl~~-------~~~~P~lILL~G~PGSGKSTlAk~L  232 (400)
                      .+++-.      ..+...+.   +++..+...    ....  ..|+..       +...|.++.|.|++||||||+++.|
T Consensus        56 ~~~~~~------~~~~~~~~---~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~L  122 (304)
T 1rj9_A           56 VRASGR------KDLKEAVK---EKLVGMLEP----DERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL  122 (304)
T ss_dssp             HHHTCC------SSTTHHHH---HHHTTTTCT----TCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHH
T ss_pred             HHHHHH------HHHHHHHH---HHHHHHhCc----ccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHH
Confidence            766322      22222222   222222210    0000  001211       1246889999999999999999999


Q ss_pred             HHhccccCCCCCeEEEeCCcccc
Q 015774          233 MKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       233 A~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +..+  +..++.+.+.+.|.++.
T Consensus       123 agll--~~~~g~V~l~g~D~~r~  143 (304)
T 1rj9_A          123 GRYY--QNLGKKVMFCAGDTFRA  143 (304)
T ss_dssp             HHHH--HTTTCCEEEECCCCSST
T ss_pred             HHHH--HhcCCEEEEEeecCCCh
Confidence            9987  44566788888898874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.96  E-value=4.6e-09  Score=99.47  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC--CCCChhhHhHHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~--G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      |.+|+|.|+|||||||+++.|++++      .+..+|+.|.+|      ..+...  |....+....+   .........
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~------~~~~~i~~D~~r------~~~~~~~~g~~~~~~~~~~---~~~~~~~~~   66 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYR------QSIMAHEERDEYKYTKKKE---GIVTGMQFD   66 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS------TTEEEECHHHHH------HHHTTSCCCC---CCHHHH---HHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC------CCcEEecccHHH------HHhccCCcccccccchhhh---hHHHHHHHH
Confidence            6799999999999999999999974      145899988776      334331  11001111111   111233445


Q ss_pred             HHHHHH---hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          290 LLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       290 lie~AL---~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ++..++   +.|.+||+|+++....+++.+..++++
T Consensus        67 ~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~  102 (301)
T 1ltq_A           67 TAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE  102 (301)
T ss_dssp             HHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            677788   899999999999998888888776654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.95  E-value=1.1e-09  Score=95.36  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC--CC--CChhhHhHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GH--HDDMLQTAELVHQSSTDA  286 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~--G~--~~d~~~aa~~v~~~~~~~  286 (400)
                      .|.+|+|+|+|||||||+++.|++++++     +.+.++.|.+++.-+  ......  |.  ...........+......
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~-----~~~~~~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPE-----PWLAFGVDSLIEAMP--LKMQSAEGGIEFDADGGVSIGPEFRALEGA   74 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSS-----CEEEEEHHHHHHHSC--GGGGTSTTSEEECTTSCEEECHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEeccchHhhhcc--hhhccchhhccccCCCccccchhHHHHHHH
Confidence            3679999999999999999999999854     567778887752110  000000  00  000000000111222222


Q ss_pred             HHHHHHHHHhCCCcEEEECcCC-ChHHHHHHHHHH
Q 015774          287 ASSLLVTALNEGRDVIMDGTLS-WVPFVEQTIAMA  320 (400)
Q Consensus       287 ae~lie~AL~eG~dVIIDgT~~-~~~~re~~i~~a  320 (400)
                      ....+...++.|.+||+|+++. .+..++.+++.+
T Consensus        75 ~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~  109 (178)
T 1qhx_A           75 WAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFV  109 (178)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHh
Confidence            3334566778999999999886 444455565554

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.93  E-value=4.7e-09  Score=109.35  Aligned_cols=105  Identities=18%  Similarity=0.197  Sum_probs=68.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCCh----hhHhHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD----MLQTAELVHQSSTD  285 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d----~~~aa~~v~~~~~~  285 (400)
                      ..|.+|+|+|+|||||||+++.|++.++|.  +.++.+|+.|+++      +.+.+.....+    ....+.........
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~--~~d~~v~s~D~~r------~~~~~~~~~~~~f~~~~~~~~~~re~~~~  104 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI--GVPTKVFNVGEYR------REAVKQYSSYNFFRPDNEEAMKVRKQCAL  104 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------HHHHSCCCCGGGGCTTCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeEEecccHHH------HHhccCCccccccCcccHHHHHHHHHHHH
Confidence            568899999999999999999999999772  4467889988776      44433210001    01111111112211


Q ss_pred             HHHHHHHHHH--hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          286 AASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       286 ~ae~lie~AL--~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .+...+...+  +.|..||+|+|+.....++.+++++++
T Consensus       105 ~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~  143 (520)
T 2axn_A          105 AALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKE  143 (520)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHH
Confidence            1122233344  679999999999999999998887764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.92  E-value=1.8e-09  Score=110.66  Aligned_cols=177  Identities=16%  Similarity=0.218  Sum_probs=99.0

Q ss_pred             chhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhh-hhhhhhh
Q 015774           96 CEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRF-EKVTKDL  174 (400)
Q Consensus        96 ~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf-~~v~~~~  174 (400)
                      +...+..+.++..=.+.-..++++|+++              .||.+|++.+..      ..+.+..++.-. +++....
T Consensus         6 l~~~~~~l~~~~~l~e~~~~~~l~el~~--------------~Ll~aDv~~~~~------~~~~~~v~~~~~~~~~~~~~   65 (433)
T 3kl4_A            6 IRDAVRKFLTGSTPYEKAVDEFIKDLQK--------------SLISSDVNVKLV------FSLTAKIKERLNKEKPPSVL   65 (433)
T ss_dssp             HHHHHHHHTTTCSCHHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHSCCCTTC
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHcCCChHHH------HHHHHHHHHHHhcccccccC
Confidence            3444555555555223334556789999              999999998877      444444444222 1222222


Q ss_pred             H-HHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          175 K-MKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       175 ~-vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      . ...++..+.+++..++...    .   .+.......|.+|+++|+|||||||++..|+..+  ...+..+.++++|.+
T Consensus        66 ~~~~~v~~~v~~eL~~~L~~~----~---~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           66 ERKEWFISIVYDELSKLFGGD----K---EPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADVY  136 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSS----S---CCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCS
T ss_pred             ChHHHHHHHHHHHHHHhcCcc----c---cccccccCCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence            1 2222333333443344200    0   0111123468999999999999999999999887  456778899999999


Q ss_pred             ccchHHHHHHh---cC-CCC----ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChH
Q 015774          254 KETDVIYRALS---SK-GHH----DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVP  311 (400)
Q Consensus       254 Re~D~irk~L~---~~-G~~----~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~  311 (400)
                      |...  ++++.   .. +.+    .......        ..+...+..+..+++++||-+|.+...
T Consensus       137 r~~a--~eqL~~~~~~~gv~~~~~~~~~dp~--------~i~~~al~~a~~~~~DvvIIDTaGr~~  192 (433)
T 3kl4_A          137 RPAA--YDQLLQLGNQIGVQVYGEPNNQNPI--------EIAKKGVDIFVKNKMDIIIVDTAGRHG  192 (433)
T ss_dssp             CHHH--HHHHHHHHHTTTCCEECCTTCSCHH--------HHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred             chhH--HHHHHHHHHhcCCceeeccccCCHH--------HHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence            8532  23331   11 111    0000111        122233445556788888887877544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.92  E-value=3.5e-08  Score=95.86  Aligned_cols=125  Identities=14%  Similarity=0.255  Sum_probs=81.5

Q ss_pred             hhHHHhhhcCCCcchhHH----HHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhh-hhh
Q 015774           98 DNIYEYFSKEAEPESLYV----KLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEK-VTK  172 (400)
Q Consensus        98 ~~i~~~~~~~~~~~~l~~----~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~-v~~  172 (400)
                      ..+..++++.+    |++    +.++||++              .||.+|++.+..      ..+++..+++-... +..
T Consensus         9 ~~~~~~~~~~~----~~~~~~~~~~~~~~~--------------~L~~~dv~~~~~------~~~~~~~~~~~~~~~~~~   64 (297)
T 1j8m_F            9 DTVRKFLTGSS----SYDKAVEDFIKELQK--------------SLISADVNVKLV------FSLTNKIKERLKNEKPPT   64 (297)
T ss_dssp             HHHHHHHSCCS----CHHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHhCCCC----CCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHHhhccccc
Confidence            34444555544    666    78899999              999999999988      66677666532221 211


Q ss_pred             hhHH-HHHHHHHHHHHHHHHhhCcCcccccccc-ccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          173 DLKM-KRVFSTLVEEMKAIRREGESHCTDVMVP-AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       173 ~~~v-kr~~~~liee~~~i~~~~~~~~~~v~~p-l~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      .... ..+...+.+++..+.. . .     ..+ +....+ |.+|.+.|++|+||||++..|+..+  ...+..+.+++.
T Consensus        65 ~~~~~~~~~~~~~~~l~~~~~-~-~-----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~  134 (297)
T 1j8m_F           65 YIERREWFIKIVYDELSNLFG-G-D-----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGA  134 (297)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTT-C-S-----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEEC
T ss_pred             cCChHHHHHHHHHHHHHHHhc-c-c-----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEec
Confidence            1111 2334444555443331 0 0     122 333334 8999999999999999999999887  345678899999


Q ss_pred             Cccccc
Q 015774          251 DAFKET  256 (400)
Q Consensus       251 DefRe~  256 (400)
                      |.++..
T Consensus       135 D~~r~~  140 (297)
T 1j8m_F          135 DVYRPA  140 (297)
T ss_dssp             CCSSSH
T ss_pred             CCCCHH
Confidence            999853

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.91  E-value=2.2e-08  Score=102.27  Aligned_cols=112  Identities=21%  Similarity=0.243  Sum_probs=75.7

Q ss_pred             hHH----HHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhh-hhh-----hhHHHHHHHH
Q 015774          113 LYV----KLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEK-VTK-----DLKMKRVFST  182 (400)
Q Consensus       113 l~~----~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~-v~~-----~~~vkr~~~~  182 (400)
                      |++    +.++|+++              .||.+|++.+..      ..+++..+++-... +..     +..++.+..+
T Consensus        22 ~~e~~~~~~l~e~~~--------------~Ll~adv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (433)
T 2xxa_A           22 LTEDNVKDTLREVRM--------------ALLEADVALPVV------REFINRVKEKAVGHEVNKSLTPGQEFVKIVRNE   81 (433)
T ss_dssp             CCHHHHHHHHHHHHH--------------HHHHHTCCHHHH------HHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHHhcccccccCChHHHHHHHHHHH
Confidence            655    78899999              999999999888      66666666643322 211     2222333333


Q ss_pred             HHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCccccch
Q 015774          183 LVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKETD  257 (400)
Q Consensus       183 liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDefRe~D  257 (400)
                      +++    +.. .      -..|+......|.+|+++|.+|+||||++..||..+  ... +..+.++++|.++...
T Consensus        82 l~~----~l~-~------~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l--~~~~G~kVllvd~D~~r~~a  144 (433)
T 2xxa_A           82 LVA----AMG-E------ENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL--REKHKKKVLVVSADVYRPAA  144 (433)
T ss_dssp             HHH----HHC-S------SSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH--HHTSCCCEEEEECCCSSTTH
T ss_pred             HHH----Hhc-c------ccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHhcCCeEEEEecCCCCccH
Confidence            332    331 0      012333334678999999999999999999999888  344 7789999999998643

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.84  E-value=2.6e-08  Score=86.81  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=59.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ..+.+|+|.|+|||||||+++.|+..+|+       +++++|++.....+.+...+.. ..+.  ...    ......+.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~-------~~i~~d~~~~~~~~~~~~~g~~-~~~~--~~~----~~~~~~~~   71 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA-------AFLDGDFLHPRRNIEKMASGEP-LNDD--DRK----PWLQALND   71 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTC-------EEEEGGGGCCHHHHHHHHTTCC-CCHH--HHH----HHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCc-------EEEeCccccchHHHHHhhcCcC-CCcc--ccc----cHHHHHHH
Confidence            45789999999999999999999999855       8999999874322222222211 1111  001    11122344


Q ss_pred             HHHHHHhCCCcEEEECcCCChHHHH
Q 015774          290 LLVTALNEGRDVIMDGTLSWVPFVE  314 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~~re  314 (400)
                      ++..+++.|.++|+|.++..+.+++
T Consensus        72 ~~~~~~~~~~~~vi~~~~~~~~~~~   96 (175)
T 1knq_A           72 AAFAMQRTNKVSLIVCSALKKHYRD   96 (175)
T ss_dssp             HHHHHHHHCSEEEEECCCCSHHHHH
T ss_pred             HHHHHHhcCCcEEEEeCchHHHHHH
Confidence            5666677899999999887655443

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.83  E-value=3e-08  Score=93.29  Aligned_cols=91  Identities=24%  Similarity=0.360  Sum_probs=61.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh---ccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE---SFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~---lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      .|.+|+|+|+|||||||+++.|++.   .|+     .+++++.|.+++      .+.+  . .+.  .....    ....
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~-----~~i~~~~D~~~~------~l~~--~-~~~--~e~~~----~~~~   62 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNI-----DVIVLGSDLIRE------SFPV--W-KEK--YEEFI----KKST   62 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-----CEEEECTHHHHT------TSSS--C-CGG--GHHHH----HHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCC-----EEEEECchHHHH------HHhh--h-hHH--HHHHH----HHHH
Confidence            4779999999999999999999998   443     445568887763      1211  1 111  11111    1122


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ...+..+++. ..||+|+++....++..+..++++
T Consensus        63 ~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~   96 (260)
T 3a4m_A           63 YRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKK   96 (260)
T ss_dssp             HHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHH
Confidence            3456667777 899999999988888777776654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.81  E-value=1.9e-08  Score=90.06  Aligned_cols=90  Identities=19%  Similarity=0.168  Sum_probs=58.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l  290 (400)
                      .|.+|+|+|+|||||||+++.|++.+|+       .+|++|.+...... ..+.......+...      ...    ...
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~-------~~i~~d~~~~~~~~-~~~~~g~~~~~~~~------~~~----~~~   78 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGY-------PFIEGDALHPPENI-RKMSEGIPLTDDDR------WPW----LAA   78 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTC-------CEEEGGGGCCHHHH-HHHHHTCCCCHHHH------HHH----HHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-------EEEeCCcCcchhhH-HHHhcCCCCCchhh------HHH----HHH
Confidence            4679999999999999999999999955       89999998742211 22211101111101      001    123


Q ss_pred             HHHHHhCCCcEEEECcCCChHHHHHHHH
Q 015774          291 LVTALNEGRDVIMDGTLSWVPFVEQTIA  318 (400)
Q Consensus       291 ie~AL~eG~dVIIDgT~~~~~~re~~i~  318 (400)
                      +...+..|.+||+|+++..+..++.+..
T Consensus        79 l~~~~~~~~~vivd~~~~~~~~~~~l~~  106 (202)
T 3t61_A           79 IGERLASREPVVVSCSALKRSYRDKLRE  106 (202)
T ss_dssp             HHHHHTSSSCCEEECCCCSHHHHHHHHH
T ss_pred             HHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence            3445588999999999988776665543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.80  E-value=6.5e-08  Score=100.84  Aligned_cols=135  Identities=10%  Similarity=0.117  Sum_probs=81.5

Q ss_pred             cccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-hhh
Q 015774           93 SKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-KVT  171 (400)
Q Consensus        93 ~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-~v~  171 (400)
                      ++++...+..++++..-.++...+.++|+++              .|+.+|++.+..      ..+.+..++.-.. .+.
T Consensus         7 ~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~~~   66 (504)
T 2j37_W            7 GRKITSALRSLSNATIINEEVLNAMLKEVCT--------------ALLEADVNIKLV------KQLRENVKSAIDLEEMA   66 (504)
T ss_dssp             -CTTTTTTTCCCSCSSCCHHHHHHHHHHHHH--------------HHCCTTTSSSTT------HHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHhhcCccc
Confidence            3445555555555554233344456889999              999999999988      5555555553332 221


Q ss_pred             hhhHH-HHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          172 KDLKM-KRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       172 ~~~~v-kr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      +.... ..+...+.+++..+..       ....++......|.+|+++|+|||||||++..|+..+  ...+..+.++++
T Consensus        67 ~~~~~~~~~~~~v~~eL~~ll~-------~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l--~~~G~kVllVd~  137 (504)
T 2j37_W           67 SGLNKRKMIQHAVFKELVKLVD-------PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYY--QRKGWKTCLICA  137 (504)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHC-------CCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEE
T ss_pred             ccCChHHHHHHHHHHHHHHHhc-------cccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEec
Confidence            11111 1222233334444442       1111333224578899999999999999999999887  334568899999


Q ss_pred             Cccccc
Q 015774          251 DAFKET  256 (400)
Q Consensus       251 DefRe~  256 (400)
                      |.++..
T Consensus       138 D~~r~a  143 (504)
T 2j37_W          138 DTFRAG  143 (504)
T ss_dssp             CCSSSH
T ss_pred             cccchh
Confidence            999864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.79  E-value=3.1e-08  Score=88.99  Aligned_cols=94  Identities=16%  Similarity=0.132  Sum_probs=61.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      .+.+.+|+|.|+|||||||+++.|+..+|+       +++++|++...........+. ...+..     . .......+
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~-------~~i~~d~~~~~~~~~~~~~g~-~~~~~~-----~-~~~~~~~~   91 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADETGL-------EFAEADAFHSPENIATMQRGI-PLTDED-----R-WPWLRSLA   91 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHCC-------EEEEGGGGSCHHHHHHHHTTC-CCCHHH-----H-HHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCC-------eEEcccccccHHHHHHHhcCC-CCCCcc-----c-ccHHHHHH
Confidence            356789999999999999999999999855       899999987433222222221 111111     0 11123344


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHH
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQT  316 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~  316 (400)
                      .++...+..|.++|+|.++..+..++.+
T Consensus        92 ~~~~~~~~~g~~viid~~~~~~~~~~~l  119 (200)
T 4eun_A           92 EWMDARADAGVSTIITCSALKRTYRDVL  119 (200)
T ss_dssp             HHHHHHHHTTCCEEEEECCCCHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEchhhhHHHHHHH
Confidence            5566677899999999998876655443

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.79  E-value=2.7e-08  Score=87.91  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=62.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ...+.+|+|.|+|||||||+++.|+..++.  .+..+.++++|.++.      .+.+. ..  +.. .+.  ......+.
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~--~~~~~~~~~~d~~~~------~~~~~-~~--~~~-~~r--~~~~~~~~   75 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK--EGYRVEVLDGDWART------TVSEG-AG--FTR-EER--LRHLKRIA   75 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHHT------TTTTT-CC--CCH-HHH--HHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEeeHHHHHH------HHhhc-cC--CCh-hhH--HHHHHHHH
Confidence            356889999999999999999999999842  344567888887652      22221 00  101 110  11111122


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      .++...++.|..||+|++......++.+..++.
T Consensus        76 ~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~  108 (186)
T 2yvu_A           76 WIARLLARNGVIVICSFVSPYKQARNMVRRIVE  108 (186)
T ss_dssp             HHHHHHHTTTCEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEeCccccHHHHHHHHHHhh
Confidence            233445688999999998877666666665554

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.77  E-value=1.8e-07  Score=95.54  Aligned_cols=111  Identities=20%  Similarity=0.275  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhh-hhhhhHHHH-HHHHHHHHHHHHHh
Q 015774          115 VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEK-VTKDLKMKR-VFSTLVEEMKAIRR  192 (400)
Q Consensus       115 ~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~-v~~~~~vkr-~~~~liee~~~i~~  192 (400)
                      .+.++|+++              .||.+|.+.+..      ..+++..+++-... +.+...... +...+.+++.....
T Consensus        28 ~~~l~e~~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~   87 (425)
T 2ffh_A           28 KATLREIRR--------------ALMDADVNLEVT------RDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG   87 (425)
T ss_dssp             HHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHhC
Confidence            578899999              999999998887      55666665533322 222222222 22222333322221


Q ss_pred             hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774          193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (400)
Q Consensus       193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~  256 (400)
                       .      ...++...  .|.+|.++|++||||||++..|+..+  ...+..+.+++.|.++..
T Consensus        88 -~------~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l--~~~g~~Vllvd~D~~r~a  140 (425)
T 2ffh_A           88 -G------EARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRPA  140 (425)
T ss_dssp             -S------SCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECCSSCHH
T ss_pred             -C------CcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEeeccccCch
Confidence             0      01233332  78899999999999999999999988  456778999999999853

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.72  E-value=6.8e-08  Score=84.31  Aligned_cols=97  Identities=15%  Similarity=0.186  Sum_probs=56.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccch---------HHHHHHhcCCCCChhhHhHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD---------VIYRALSSKGHHDDMLQTAELVHQ  281 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D---------~irk~L~~~G~~~d~~~aa~~v~~  281 (400)
                      .|.+|+|.|+|||||||+++.|++.+++       .+|+.|++-...         ...+.+...|....    ....+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~-------~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~   70 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGY-------THLSAGELLRDERKNPDSQYGELIEKYIKEGKIVP----VEITIS   70 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCC----HHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCC-------eEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCC----HHHHHH
Confidence            4789999999999999999999999865       789988763110         00011111111110    011112


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHH
Q 015774          282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (400)
Q Consensus       282 ~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~  319 (400)
                      .....+...+ .++..|..||+|++.........+...
T Consensus        71 ~l~~~~~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~  107 (196)
T 1tev_A           71 LLKREMDQTM-AANAQKNKFLIDGFPRNQDNLQGWNKT  107 (196)
T ss_dssp             HHHHHHHHHH-HHCTTCCEEEEESCCCSHHHHHHHHHH
T ss_pred             HHHHHHHhhh-ccccCCCeEEEeCCCCCHHHHHHHHHH
Confidence            2222222222 234468899999998887655555443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.69  E-value=3.2e-08  Score=86.28  Aligned_cols=96  Identities=14%  Similarity=0.150  Sum_probs=53.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      .|.+|+|+|+|||||||+++.|++.+++       .++ +.|.+.  +.+.+ +...|. .++....... +    ....
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~-------~~i~d~~~~g--~~i~~-~~~~g~-~~~~~~~~~~-~----~~~~   67 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPG-------SFVFEPEEMG--QALRK-LTPGFS-GDPQEHPMWI-P----LMLD   67 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTT-------CEECCTHHHH--HHHHH-TSTTCC-SCGGGSTTHH-H----HHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCC-------CEEEchhhhH--HHHHH-hCcccc-chhhhhHHHH-H----HHHH
Confidence            5779999999999999999999999865       344 533221  11222 222221 1121111100 1    1122


Q ss_pred             HHHHHHhC-CCcEEEECcCCChHHHHHHHHHHHh
Q 015774          290 LLVTALNE-GRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       290 lie~AL~e-G~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ++..+++. |..||+|+++....+++.++..+++
T Consensus        68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~  101 (183)
T 2vli_A           68 ALQYASREAAGPLIVPVSISDTARHRRLMSGLKD  101 (183)
T ss_dssp             HHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHh
Confidence            34445555 8899999999988777777666653

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.64  E-value=1.3e-07  Score=83.18  Aligned_cols=90  Identities=20%  Similarity=0.278  Sum_probs=55.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccch-----HHH---HHHhcCCCCChhhHhHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD-----VIY---RALSSKGHHDDMLQTAELVHQ  281 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D-----~ir---k~L~~~G~~~d~~~aa~~v~~  281 (400)
                      ..|.+|+|.|+|||||||+++.|++.+++       .+++.|++-...     +.-   +.+...|... +   ....  
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~-------~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~-~---~~~~--   73 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGY-------THLSTGDLLRSEVSSGSARGKKLSEIMEKGQLV-P---LETV--   73 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCC-------EEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCC-C---HHHH--
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCC-------eEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcC-C---HHHH--
Confidence            35679999999999999999999999965       799987754210     000   0111111110 0   0111  


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEECcCCChHHHH
Q 015774          282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVE  314 (400)
Q Consensus       282 ~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re  314 (400)
                        .......+..++..|..||+|+........+
T Consensus        74 --~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~  104 (196)
T 2c95_A           74 --LDMLRDAMVAKVNTSKGFLIDGYPREVQQGE  104 (196)
T ss_dssp             --HHHHHHHHHHHTTTCSCEEEESCCCSHHHHH
T ss_pred             --HHHHHHHHHhccccCCcEEEeCCCCCHHHHH
Confidence              2233445566777899999999766554443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.62  E-value=1.2e-07  Score=80.46  Aligned_cols=94  Identities=21%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCC-CChhhHhHHHHHHH-HHHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH-HDDMLQTAELVHQS-STDAASSL  290 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~-~~d~~~aa~~v~~~-~~~~ae~l  290 (400)
                      .+|+|+|+|||||||+++.| +.+|+       .+++.|++-     ++.+...+. ..+........... .......+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~-------~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGA-------KVIVMSDVV-----RKRYSIEAKPGERLMDFAKRLREIYGDGVVARL   68 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTC-------EEEEHHHHH-----HHHHHHHC---CCHHHHHHHHHHHHCTTHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCC-------cEEEHhHHH-----HHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHH
Confidence            48999999999999999999 88865       678755432     222222110 01111111111111 12223345


Q ss_pred             HHHHH--hCCCcEEEECcCCChHHHHHHHHHH
Q 015774          291 LVTAL--NEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       291 ie~AL--~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      +...+  ..+..||+||. ..+..++.+....
T Consensus        69 ~~~~l~~~~~~~vi~dg~-~~~~~~~~l~~~~   99 (179)
T 3lw7_A           69 CVEELGTSNHDLVVFDGV-RSLAEVEEFKRLL   99 (179)
T ss_dssp             HHHHHCSCCCSCEEEECC-CCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeEEEeCC-CCHHHHHHHHHHh
Confidence            56667  78889999998 6666665554443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.60  E-value=1.5e-07  Score=82.88  Aligned_cols=91  Identities=18%  Similarity=0.286  Sum_probs=56.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHH-----H---HHHhcCCCCChhhHhHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI-----Y---RALSSKGHHDDMLQTAELVHQS  282 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~i-----r---k~L~~~G~~~d~~~aa~~v~~~  282 (400)
                      .|.+|+|.|+|||||||+++.|++.+++       .+++.|++....+.     .   ..+...|....    ...++  
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~-------~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~--   77 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF-------THLSTGELLREELASESERSKLIRDIMERGDLVP----SGIVL--   77 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTC-------EEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC----HHHHH--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCC-------eEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC----HHHHH--
Confidence            4679999999999999999999999955       89998876421110     0   11111121100    11122  


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHH
Q 015774          283 STDAASSLLVTALNEGRDVIMDGTLSWVPFVEQT  316 (400)
Q Consensus       283 ~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~  316 (400)
                        ..+...+...+..|..||+|+.......+..+
T Consensus        78 --~~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l  109 (199)
T 2bwj_A           78 --ELLKEAMVASLGDTRGFLIDGYPREVKQGEEF  109 (199)
T ss_dssp             --HHHHHHHHHHTTSCSCEEEETCCSSHHHHHHH
T ss_pred             --HHHHHHHhcccccCccEEEeCCCCCHHHHHHH
Confidence              22333445556689999999988776554444

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.58  E-value=6.8e-08  Score=98.69  Aligned_cols=131  Identities=15%  Similarity=0.235  Sum_probs=80.0

Q ss_pred             chhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhh-hhhhh
Q 015774           96 CEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEK-VTKDL  174 (400)
Q Consensus        96 ~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~-v~~~~  174 (400)
                      +...+..++++.+-.+.-..+.++|++.              .|+.++++....      ..+...+++..+.. +..+.
T Consensus         8 ~~~~~~~~~~~~~~~e~~~~~~~~e~~~--------------~Ll~adv~~~~~------~~~~~~vk~~~~~~~~~~~~   67 (432)
T 2v3c_C            8 LNKALNKLKAAAFVDKKLIKEVIKDIQR--------------ALIQADVNVKLV------LKMSKEIERRALEEKTPKGL   67 (432)
T ss_dssp             HHHHHHHCCSSSCCCSSTTHHHHHHHHH--------------HHHHTCCCHHHH------HHHTHHHHHHHSSSCSSCSS
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHhccccccccC
Confidence            4445555655544222233478999999              999999998876      44455555544432 22222


Q ss_pred             HHHH-HHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          175 KMKR-VFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       175 ~vkr-~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .... +...+.+++..++.     +.  ..++......|.+|+++|+||+||||++..|+..+  ...+..+.++++|.+
T Consensus        68 ~~~~~~~~~~~~~l~~ll~-----~~--~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l--~~~G~kVllv~~D~~  138 (432)
T 2v3c_C           68 SKKEHIIKIVYEELVKLLG-----EE--AKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI--QKRGLKPALIAADTY  138 (432)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CS--CCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHH--HHHHCCEEEECCSCC
T ss_pred             ChHHHHHHHHHHHHHHHhC-----CC--CcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecccc
Confidence            2222 22222233333442     11  11232223467899999999999999999999987  334568899999998


Q ss_pred             cc
Q 015774          254 KE  255 (400)
Q Consensus       254 Re  255 (400)
                      +.
T Consensus       139 r~  140 (432)
T 2v3c_C          139 RP  140 (432)
T ss_dssp             CT
T ss_pred             Cc
Confidence            74

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.57  E-value=2.4e-07  Score=94.57  Aligned_cols=106  Identities=13%  Similarity=0.110  Sum_probs=65.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC----ChhhHhHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----DDMLQTAELVHQSST  284 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~----~d~~~aa~~v~~~~~  284 (400)
                      ...|.+|+|+|.|||||||+++.|++.++|.  ..+...++.|+++      ..+.+....    +.....+........
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~--~~~t~~~~~d~~r------~~~~g~~~~~~ifd~~g~~~~r~re~~~  107 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFI--GVPTREFNVGQYR------RDMVKTYKSFEFFLPDNEEGLKIRKQCA  107 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------HHHHCSCCCGGGGCTTCHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHhcc--CCCceEEecchhh------hhhccCCCcccccCCCCHHHHHHHHHHH
Confidence            3568899999999999999999999998762  3456677766655      333321000    001111111111111


Q ss_pred             HHHHHHHHHHH--hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          285 DAASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       285 ~~ae~lie~AL--~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ..+-..+...+  ..|..||+|+|+.....++.+++.+++
T Consensus       108 ~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~  147 (469)
T 1bif_A          108 LAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence            11111224445  578899999999999999988887764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.56  E-value=2.9e-07  Score=80.12  Aligned_cols=38  Identities=29%  Similarity=0.534  Sum_probs=33.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..|.+|+|+|+|||||||+++.|++.+|+       .+++.|++-
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~-------~~i~~d~~~   41 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGW-------VHLSAGDLL   41 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCC-------eEeeHHHHH
Confidence            35789999999999999999999999865       899987653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.56  E-value=5.2e-07  Score=80.32  Aligned_cols=90  Identities=16%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccch---------HHHHHHhcCCCCChhhHhHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD---------VIYRALSSKGHHDDMLQTAELV  279 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D---------~irk~L~~~G~~~d~~~aa~~v  279 (400)
                      ...|.+|+|.|+|||||||+++.|++.+|+       .+|+.|++-...         ...+.+...|... +   ....
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~-------~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~-~---~~~~   80 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSF-------VHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV-P---QEIT   80 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSC-------EEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCC-C---HHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCc-------eEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcC-C---HHHH
Confidence            456889999999999999999999999855       899988643100         0001111111110 0   0112


Q ss_pred             HHHHHHHHHHHHHHHHhCC-CcEEEECcCCChHHH
Q 015774          280 HQSSTDAASSLLVTALNEG-RDVIMDGTLSWVPFV  313 (400)
Q Consensus       280 ~~~~~~~ae~lie~AL~eG-~dVIIDgT~~~~~~r  313 (400)
                          ...+...+..++..| ..+|+||.....+..
T Consensus        81 ----~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~  111 (203)
T 1ukz_A           81 ----LALLRNAISDNVKANKHKFLIDGFPRKMDQA  111 (203)
T ss_dssp             ----HHHHHHHHHHHHHTTCCEEEEETCCCSHHHH
T ss_pred             ----HHHHHHHHHhhhccCCCeEEEeCCCCCHHHH
Confidence                223344556677788 589999986655433

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.48  E-value=3.7e-07  Score=82.53  Aligned_cols=99  Identities=10%  Similarity=0.091  Sum_probs=59.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ...+.+|+|.|+|||||||+++.|+..++. ..|..++++++|.++.      .+... ..  +.. ...  ......+.
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-~~g~~~~~~~~d~~r~------~l~~~-~~--~~~-~~r--~~~~~~~~   88 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDGDNIRF------GLNKD-LG--FSE-ADR--NENIRRIA   88 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEECHHHHTT------TTTTT-CC--SSH-HHH--HHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhcc-ccCCcEEEECChHHhh------hhccc-cC--CCH-HHH--HHHHHHHH
Confidence            356789999999999999999999998841 1122478999887762      22211 00  100 110  11112223


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      .++..+++.|..||+|.+......++.+..++
T Consensus        89 ~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~  120 (211)
T 1m7g_A           89 EVAKLFADSNSIAITSFISPYRKDRDTARQLH  120 (211)
T ss_dssp             HHHHHHHHTTCEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEecCCccHHHHHHHHHHh
Confidence            35666788999999995543334444444444

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.46  E-value=4e-07  Score=79.60  Aligned_cols=36  Identities=19%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+.+|+|.|+|||||||+++.|++.+|+       .+++.|++
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~-------~~i~~d~~   38 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGF-------KKLSTGDI   38 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTC-------EEECHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-------eEecHHHH
Confidence            4678999999999999999999999865       89998754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.46  E-value=4.1e-07  Score=81.58  Aligned_cols=98  Identities=10%  Similarity=0.101  Sum_probs=62.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ..++.+|+|.|+|||||||+++.|+..++.  .+.-++++++|.++.      .+... ..-.....     ........
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~--~G~~~~~~d~d~~~~------~~~~~-~~~~~~~~-----~~~~~~~~   87 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ--KGKLCYILDGDNVRH------GLNRD-LSFKAEDR-----AENIRRVG   87 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHTT------TTTTT-CCSSHHHH-----HHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEecCchhhh------Hhhcc-cCcChHHH-----HHHHHHHH
Confidence            467899999999999999999999999842  111234899888763      12211 11001110     11112233


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      .++......|..||.......+..++.+.+.+
T Consensus        88 ~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~  119 (200)
T 3uie_A           88 EVAKLFADAGIICIASLISPYRTDRDACRSLL  119 (200)
T ss_dssp             HHHHHHHHTTCEEEEECCCCCHHHHHHHHHTS
T ss_pred             HHHHHHHhCCceEEEecCCchHHHHHHHHHhc
Confidence            35555667899999998888877777665543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.45  E-value=5.5e-07  Score=78.87  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +..|+|+|+|||||||+++.|++.+|+       .++|.|++.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~-------~~i~~d~~~   40 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKR-------ILYDSDKEI   40 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCC-------CEEEHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEChHHH
Confidence            558899999999999999999999966       799988775

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.44  E-value=1.5e-06  Score=78.71  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.|..|+|.|+|||||||+++.|++.+++       .++++|++
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-------~~i~~d~~   38 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHA-------AHLATGDM   38 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCc-------eEEehhHH
Confidence            35678999999999999999999999965       78998665

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.42  E-value=9.5e-07  Score=76.86  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChh---hHhHHHHHHHHHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDM---LQTAELVHQSSTDAASS  289 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~---~~aa~~v~~~~~~~ae~  289 (400)
                      .+|+|.|+|||||||+++.|++.++  ..+..+.+++.|++-     .+.+...+.....   .......+......+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD--NQGINNKIINYGDFM-----LATALKLGYAKDRDEMRKLSVEKQKKLQIDAAK   74 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH--TTTCCEEEEEHHHHH-----HHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEEECChHH-----HHHHHhcccccchhhhhcCCHHHHHHHHHHHHH
Confidence            4799999999999999999999984  223346888755432     2222111111100   00000100111122223


Q ss_pred             HHHHHH--hCCCcEEEECc
Q 015774          290 LLVTAL--NEGRDVIMDGT  306 (400)
Q Consensus       290 lie~AL--~eG~dVIIDgT  306 (400)
                      .+..++  ..|..||+|+.
T Consensus        75 ~i~~~l~~~~~~~vi~d~~   93 (194)
T 1nks_A           75 GIAEEARAGGEGYLFIDTH   93 (194)
T ss_dssp             HHHHHHHHTCSSEEEEEEC
T ss_pred             HHHHHhhccCCCEEEECCc
Confidence            355666  78999999985

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=9e-07  Score=79.28  Aligned_cols=38  Identities=26%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .++.+|+|.|+|||||||+++.|++.+|+       .+++.|++.
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~-------~~i~~d~~~   60 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV-------PFIDLDWYI   60 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCC-------CEEcchHHH
Confidence            45678999999999999999999999965       689988764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.41  E-value=5.3e-07  Score=87.39  Aligned_cols=110  Identities=10%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHHh
Q 015774          114 YVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKV-TKDLKMKRVFSTLVEEMKAIRR  192 (400)
Q Consensus       114 ~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v-~~~~~vkr~~~~liee~~~i~~  192 (400)
                      +.+.++||++              .|+.++++.+..      ..+++..++.++... .....+...+...+.+   +..
T Consensus        38 ~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~l~   94 (296)
T 2px0_A           38 LPEPLRKAEK--------------LLQETGIKESTK------TNTLKKLLRFSVEAGGLTEENVVGKLQEILCD---MLP   94 (296)
T ss_dssp             -CCHHHHHHH--------------HHHHSCCCHHHH------HHHHHHHHHHHHSSSCCCTTTHHHHHHHHHHT---TSC
T ss_pred             cHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhhcccCCCHHHHHHHHHHHHHH---HhC
Confidence            3467899999              999999999888      666666654433322 1122333333333332   321


Q ss_pred             hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774          193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (400)
Q Consensus       193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~  256 (400)
                           .   ..++.. ...|.++++.|++||||||++..|+..+. +..|..+.+++.|.++..
T Consensus        95 -----~---~~~~~~-~~~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G~~V~lv~~D~~r~~  148 (296)
T 2px0_A           95 -----S---ADKWQE-PIHSKYIVLFGSTGAGKTTTLAKLAAISM-LEKHKKIAFITTDTYRIA  148 (296)
T ss_dssp             -----C---GGGSCC-CCCSSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCCEEEEECCCSSTT
T ss_pred             -----C---cccccc-cCCCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCEEEEEecCcccch
Confidence                 0   001111 24678999999999999999999998872 134668899999998853

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.40  E-value=5e-07  Score=80.63  Aligned_cols=38  Identities=21%  Similarity=0.200  Sum_probs=33.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ...|.+|+|.|+|||||||+++.|++.+++       .+++.|++
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~-------~~i~~d~~   54 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI-------PQISTGEL   54 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------cEEehhHH
Confidence            467889999999999999999999999965       68887654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.38  E-value=6.5e-07  Score=80.46  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHH---HHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQS---STDAASSL  290 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~---~~~~ae~l  290 (400)
                      .|+|.|+|||||||+++.|++.+|+       .+++.|++-     ++.+... .+ ............   .......+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~-------~~i~~d~~~-----r~~~~~~-~~-~~~~~~~~~~~g~~~~~~~~~~~   67 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEI-------PHISTGDMF-----RAAIKNG-TE-LGLKAKSFMDQGNLVPDEVTIGI   67 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC-------CEEEHHHHH-----HHHHHTT-CH-HHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEeeHHHHH-----HHHHhcC-CH-HHHHHHHHHHCCCCCCHHHHHHH
Confidence            5789999999999999999999965       788876543     1222211 00 000000000000   01122234


Q ss_pred             HHHHHhC---CCcEEEECcCCChHHHHHHHHHH
Q 015774          291 LVTALNE---GRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       291 ie~AL~e---G~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      +...+..   |..+|+|+..........+...+
T Consensus        68 ~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~  100 (216)
T 3fb4_A           68 VHERLSKDDCQKGFLLDGFPRTVAQADALDSLL  100 (216)
T ss_dssp             HHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHH
Confidence            4445543   88999999877766555554443

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.37  E-value=1.6e-06  Score=79.37  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +|+|.|+|||||||+++.|++.+++       .++++|++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~-------~~i~~dd~   34 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSL-------AHIESGGI   34 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTC-------EEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------eEEchHHH
Confidence            6899999999999999999999855       78988665

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.37  E-value=8.3e-07  Score=82.76  Aligned_cols=38  Identities=16%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ...|.+|+|.|+|||||||+++.|++.+|+       .++++|++
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~-------~~is~~~~   63 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCY-------CHLSTGDL   63 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCC-------eEEecHHH
Confidence            357899999999999999999999999855       89987654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.36  E-value=1.2e-06  Score=76.92  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +++.+|+|.|+|||||||+++.|+..++     .+.+++++|++.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~   46 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLW   46 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchh
Confidence            4678999999999999999999998863     367899988875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.34  E-value=6.9e-07  Score=80.44  Aligned_cols=94  Identities=17%  Similarity=0.159  Sum_probs=52.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHH---HHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQS---STDAASSL  290 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~---~~~~ae~l  290 (400)
                      .|+|.|+|||||||+++.|++.+|+       .+++.|++-     ++.+... . .............   .......+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~-------~~i~~d~~~-----r~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~   67 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGI-------PHISTGDMF-----RAAMKEE-T-PLGLEAKSYIDKGELVPDEVTIGI   67 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSC-------CEEEHHHHH-----HHHHHTT-C-HHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEEeHHHHH-----HHHHhcC-C-HHHHHHHHHHHCCCCCCHHHHHHH
Confidence            4789999999999999999999865       789876543     1222111 0 0000000000000   00111223


Q ss_pred             HHHHHh---CCCcEEEECcCCChHHHHHHHHHHH
Q 015774          291 LVTALN---EGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       291 ie~AL~---eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      +...+.   .|..+|+|+..........+...+.
T Consensus        68 ~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~  101 (216)
T 3dl0_A           68 VKERLGKDDCERGFLLDGFPRTVAQAEALEEILE  101 (216)
T ss_dssp             HHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHH
T ss_pred             HHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHH
Confidence            344444   3889999997777666655555443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.33  E-value=1.2e-06  Score=76.37  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=31.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.+|+|.|+|||||||+++.|++.++  ..+.+..+++.|++
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~i~~~~~   42 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR--KEGVNYKMVSFGSV   42 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH--TTTCCCEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH--hcCcceEEEehHHH
Confidence            56899999999999999999999985  11112578886643

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.33  E-value=3.2e-06  Score=74.51  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV  292 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie  292 (400)
                      .+++|.|+|||||||+++.|+..+      .+.+++++|+++..      . ..+...+...  ........+.....+.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~------~g~~~i~~d~~~~~------~-~~~~~~~~~~--~~~~~~~~~~l~~~~~   67 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQL------DNSAYIEGDIINHM------V-VGGYRPPWES--DELLALTWKNITDLTV   67 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS------SSEEEEEHHHHHTT------C-CTTCCCGGGC--HHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhccc------CCeEEEcccchhhh------h-ccccccCccc--hhHHHHHHHHHHHHHH
Confidence            588999999999999999999865      24588998877531      1 1111111110  0000112222333444


Q ss_pred             HHHhCCCcEEEECcCCChHHHHHHHHH
Q 015774          293 TALNEGRDVIMDGTLSWVPFVEQTIAM  319 (400)
Q Consensus       293 ~AL~eG~dVIIDgT~~~~~~re~~i~~  319 (400)
                      ..+..|.++|+|++. .+...+.+...
T Consensus        68 ~~~~~~~~~ild~~~-~~~~~~~~~~~   93 (189)
T 2bdt_A           68 NFLLAQNDVVLDYIA-FPDEAEALAQT   93 (189)
T ss_dssp             HHHHTTCEEEEESCC-CHHHHHHHHHH
T ss_pred             HHHhcCCcEEEeecc-CHHHHHHHHHH
Confidence            556788999999964 45544444444

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.32  E-value=6.9e-07  Score=79.53  Aligned_cols=30  Identities=20%  Similarity=0.129  Sum_probs=26.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ...|.+|+|+|+|||||||+++.|++.+++
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            346789999999999999999999999865

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.32  E-value=1.8e-06  Score=78.43  Aligned_cols=36  Identities=25%  Similarity=0.186  Sum_probs=31.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +..|+|.|+|||||||+++.|++.+++       .+++.|++-
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~-------~~i~~d~li   40 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGL-------AHLSTGDML   40 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCc-------eEEehhHHH
Confidence            457899999999999999999999965       899987643

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.31  E-value=4.3e-06  Score=80.83  Aligned_cols=110  Identities=19%  Similarity=0.270  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhhhhh-hH-HHHHHHHHHHHHHHHHh
Q 015774          115 VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKD-LK-MKRVFSTLVEEMKAIRR  192 (400)
Q Consensus       115 ~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v~~~-~~-vkr~~~~liee~~~i~~  192 (400)
                      .++++||+.              .||.++.+.+..      ..+++..+...-.+++.. .. ...++.-.++++.....
T Consensus        28 ~~~l~~l~~--------------~Ll~ad~~~~~~------~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~   87 (295)
T 1ls1_A           28 KATLREIRR--------------ALMDADVNLEVA------RDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG   87 (295)
T ss_dssp             HHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHC
Confidence            577888887              999999998877      566666665444444421 11 12333334444332211


Q ss_pred             hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                       .    .  ..++...  .|.++.+.|++|+||||++..|+..+  ...+..+.+++.|..+.
T Consensus        88 -~----~--~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~--~~~~~~v~l~~~d~~~~  139 (295)
T 1ls1_A           88 -G----E--ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRP  139 (295)
T ss_dssp             -S----S--CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEECCSSCH
T ss_pred             -C----C--CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcccH
Confidence             0    0  0233322  78899999999999999999999887  44567889999998874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.31  E-value=4e-06  Score=77.25  Aligned_cols=93  Identities=25%  Similarity=0.276  Sum_probs=58.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC-CccccchHHHHHHhcCCCCChhhHhHHHHHH-H--HHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA-DAFKETDVIYRALSSKGHHDDMLQTAELVHQ-S--STDAASS  289 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda-DefRe~D~irk~L~~~G~~~d~~~aa~~v~~-~--~~~~ae~  289 (400)
                      +|+|.|+|||||||.|+.|++.+|+       .+|++ |-||      +.+....  .-.......... .  ....+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~-------~~istGdllR------~~i~~~t--~lg~~~~~~~~~G~lvpd~iv~~   66 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGF-------VHISTGDILR------EAVQKGT--PLGKKAKEYMERGELVPDDLIIA   66 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC-------EEEEHHHHHH------HHHHHTC--HHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC-------eEEcHHHHHH------HHHHhcC--hhhhhHHHHHhcCCcCCHHHHHH
Confidence            6889999999999999999999966       89985 3344      3333210  000000000000 0  0233445


Q ss_pred             HHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      ++...+.+...+|+||--.+....+.+..+..
T Consensus        67 lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~   98 (206)
T 3sr0_A           67 LIEEVFPKHGNVIFDGFPRTVKQAEALDEMLE   98 (206)
T ss_dssp             HHHHHCCSSSCEEEESCCCSHHHHHHHHHHHH
T ss_pred             HHHHhhccCCceEecCCchhHHHHHHHHhhHH
Confidence            67778888888999999888777666655443

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.30  E-value=3e-06  Score=74.96  Aligned_cols=90  Identities=21%  Similarity=0.191  Sum_probs=49.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCC---CCChhhHhHHHHHH-HHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG---HHDDMLQTAELVHQ-SSTDA  286 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G---~~~d~~~aa~~v~~-~~~~~  286 (400)
                      +|.+|+|.|+|||||||+++.|++.++..  + +++..+.. +  .+.+++.+...+   ..+..  .....+. .-...
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~--g-~~~~~~~~-~--~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~r~~~   74 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELK--R-DVYLTEWN-S--SDWIHDIIKEAKKKDLLTPL--TFSLIHATDFSDR   74 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTT--S-CEEEEETT-C--CCHHHHHHHHHTTTSCCCHH--HHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhc--C-CEEEecCC-c--HHHHHHHHhccccccCCCHH--HHHHHHHHHHHHH
Confidence            46899999999999999999999998642  2 33332211 1  112223332211   11111  1111111 11122


Q ss_pred             HHHHHHHHHhCCCcEEEECcCC
Q 015774          287 ASSLLVTALNEGRDVIMDGTLS  308 (400)
Q Consensus       287 ae~lie~AL~eG~dVIIDgT~~  308 (400)
                      ....+..+++.|..||+|+.+.
T Consensus        75 ~~~~i~~~l~~g~~vi~D~~~~   96 (213)
T 2plr_A           75 YERYILPMLKSGFIVISDRYIY   96 (213)
T ss_dssp             HHHTHHHHHHTTCEEEEESCHH
T ss_pred             HHHHHHHHHhCCCEEEEeCcHh
Confidence            2334566788999999998543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.30  E-value=4.7e-06  Score=77.77  Aligned_cols=36  Identities=17%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      .+.|.+|+|.|+|||||||.|+.|++.+|+       .+|++.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~-------~hIstG   61 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHF-------NHLSSG   61 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCC-------EEECHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCC-------ceEcHH
Confidence            367889999999999999999999999966       899863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.29  E-value=2.5e-06  Score=77.83  Aligned_cols=38  Identities=18%  Similarity=0.159  Sum_probs=31.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..|.+|+|.|+|||||||+++.|++.+++       .+++.|++-
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-------~~i~~d~~~   42 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFEL-------KHLSSGDLL   42 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSS-------EEEEHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCC-------eEEechHHH
Confidence            35679999999999999999999999965       889987643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.29  E-value=2.2e-06  Score=75.45  Aligned_cols=92  Identities=22%  Similarity=0.276  Sum_probs=61.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      +++.++.|.|+|||||||+++.+..         +..+++.|.++      ..+...  +... .....++.    ....
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~~~------g~~~~~--~~~~-~~~~~~~~----~~~~   64 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDFCR------GLMSDD--ENDQ-TVTGAAFD----VLHY   64 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHHHH------HHHCSS--TTCG-GGHHHHHH----HHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHHHH------HHhcCc--ccch-hhHHHHHH----HHHH
Confidence            4788999999999999999999653         22467766544      444332  1111 11111222    2223


Q ss_pred             HHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      .....+..|..+++|.++.....+.+.+.+++..
T Consensus        65 ~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral   98 (171)
T 4gp7_A           65 IVSKRLQLGKLTVVDATNVQESARKPLIEMAKDY   98 (171)
T ss_dssp             HHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHc
Confidence            4555778999999999999988888998888764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.27  E-value=3.2e-06  Score=73.72  Aligned_cols=86  Identities=21%  Similarity=0.183  Sum_probs=49.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc---hHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~---D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l  290 (400)
                      +|+|.|+|||||||+++.|++.+.-    .+..++++|+-...   +.+.+.+.. |..+ +.................+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~----~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~~~l~~~   75 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ----KGYFVSLYREPGGTKVGEVLREILLT-EELD-ERTELLLFEASRSKLIEEK   75 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEESSCSSHHHHHHHHHHHH-SCCC-HHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeCCCCCchHHHHHHHHcC-CCCC-HHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999998710    12357777764321   112222221 2111 1111111111112334456


Q ss_pred             HHHHHhCCCcEEEEC
Q 015774          291 LVTALNEGRDVIMDG  305 (400)
Q Consensus       291 ie~AL~eG~dVIIDg  305 (400)
                      +..++.+|..||+|.
T Consensus        76 i~~~l~~~~~vi~dr   90 (195)
T 2pbr_A           76 IIPDLKRDKVVILDR   90 (195)
T ss_dssp             HHHHHHTTCEEEEES
T ss_pred             HHHHHhCCCEEEECc
Confidence            667889999999994

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.23  E-value=5.5e-06  Score=87.42  Aligned_cols=99  Identities=11%  Similarity=0.134  Sum_probs=66.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      ...|.+|+++|+|||||||+++.|++.+++.  | ..++++++|.++      +.+.+. ..  +.. .+.  ....+.+
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~--G~~~~~~lD~D~ir------~~l~~~-~~--f~~-~er--~~~i~ri  458 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQ--GGRSVSLLLGDTVR------HELSSE-LG--FTR-EDR--HTNIQRI  458 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHH--CSSCEEEEEHHHHH------HHTCTT-CC--CSH-HHH--HHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhccc--CCceEEEECcHHHH------HHhccc-cC--CCh-hHH--HHHHHHH
Confidence            3567899999999999999999999998631  2 357889987765      444332 11  111 111  1112233


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      ..++...+++|..||.+.+...+..++.+.++++
T Consensus       459 ~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~  492 (573)
T 1m8p_A          459 AFVATELTRAGAAVIAAPIAPYEESRKFARDAVS  492 (573)
T ss_dssp             HHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHH
Confidence            4566777889999999977766777777766654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.21  E-value=5e-06  Score=71.57  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|+|+|+|||||||+++.|++.+|+       .+++.|.+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~-------~~id~d~~~   37 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGY-------EFVDTDIFM   37 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC-------cEEcccHHH
Confidence            36899999999999999999999965       799988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.21  E-value=2.4e-06  Score=73.41  Aligned_cols=34  Identities=24%  Similarity=0.097  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|+|.|+|||||||+++.|++.+++       .+++.|++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~-------~~i~~d~~~   35 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNI-------PFYDVDEEV   35 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC-------CEEECcHHH
Confidence            6899999999999999999999965       689988764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.20  E-value=8e-06  Score=74.97  Aligned_cols=46  Identities=20%  Similarity=0.171  Sum_probs=32.2

Q ss_pred             cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       200 ~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.|.|... ...+..|+|.|+|||||||+++.|++.+++       .++++|++
T Consensus         5 ~~~~p~~~-~~~~~~I~l~G~~GsGKsT~a~~La~~l~~-------~~i~~d~l   50 (233)
T 1ak2_A            5 PAAEPVPE-SPKGVRAVLLGPPGAGKGTQAPKLAKNFCV-------CHLATGDM   50 (233)
T ss_dssp             ----------CCCCEEEEECCTTSSHHHHHHHHHHHHTC-------EEEEHHHH
T ss_pred             CCCCCCCC-CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------ceecHHHH
Confidence            33444432 345678999999999999999999999955       78998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.20  E-value=2.1e-06  Score=76.39  Aligned_cols=29  Identities=28%  Similarity=0.329  Sum_probs=26.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ..|.+|+|.|+|||||||+++.|++.+++
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.20  E-value=7.2e-07  Score=79.12  Aligned_cols=39  Identities=21%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHh-ccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKE-SFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~-lg~~~~~~~avvIdaDefR  254 (400)
                      ...+..|+|+|+|||||||+++.|++. +|+       .++|+|++-
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~-------~~id~d~~~   46 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAELDGF-------QHLEVGKLV   46 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTE-------EEEEHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-------EEeeHHHHH
Confidence            445678999999999999999999999 655       899988754

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.19  E-value=3.6e-06  Score=86.91  Aligned_cols=92  Identities=9%  Similarity=0.078  Sum_probs=67.7

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..-.+.|||.+|+++++++...+.+..|++.+..-..      ..+-.+-......+..+++.|+||+||||+|+.+++.
T Consensus        27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~------~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKK------NSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHH------TTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhch------hhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999999999987654221      1111111111235678999999999999999999999


Q ss_pred             ccccCCCCCeEEEeCCccccchH
Q 015774          236 SFWSGAATNAVVVEADAFKETDV  258 (400)
Q Consensus       236 lg~~~~~~~avvIdaDefRe~D~  258 (400)
                      +++     .++.+++.+++..+.
T Consensus       101 l~~-----~~i~in~s~~~~~~~  118 (516)
T 1sxj_A          101 LGY-----DILEQNASDVRSKTL  118 (516)
T ss_dssp             TTC-----EEEEECTTSCCCHHH
T ss_pred             cCC-----CEEEEeCCCcchHHH
Confidence            965     677788777765433

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.19  E-value=1.1e-06  Score=82.57  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=31.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|+|+|+|||||||+++.|++.+++       .+++.|.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~-------~~i~~D~~~   36 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGW-------PVVALDRVQ   36 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCC-------CEEECCSGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCC-------eEEeccHHh
Confidence            47999999999999999999999854       799999975

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.18  E-value=3.8e-06  Score=88.08  Aligned_cols=96  Identities=14%  Similarity=0.064  Sum_probs=63.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~  289 (400)
                      ..|.+|+++|+|||||||+++.|++.++.  .+..+.++++|.++      +.+.+.. .  +... +.  ......+..
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~--~G~~~~~ld~D~ir------~~l~~~~-~--f~~~-er--~~~l~~i~~  435 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQA--RGRKVTLLDGDVVR------THLSRGL-G--FSKE-DR--ITNILRVGF  435 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECHHHHH------HHTCTTC-C--SSHH-HH--HHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhh--cCCeEEEECchHhh------hhhcccc-c--ccHH-HH--HHHHHHHHH
Confidence            45789999999999999999999999853  34567899988765      4454321 1  1111 11  111122333


Q ss_pred             HHHHHHhCCCcEEEECcCCChHHHHHHHHH
Q 015774          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (400)
Q Consensus       290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~  319 (400)
                      ++...++.|..||+|+++..+..++.+.+.
T Consensus       436 ~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~  465 (546)
T 2gks_A          436 VASEIVKHNGVVICALVSPYRSARNQVRNM  465 (546)
T ss_dssp             HHHHHHHTTCEEEEECCCCCHHHHHHHHTT
T ss_pred             HHHHHHhCCCEEEEEcCCCCHHHHHHHHHH
Confidence            566678899999999988877665555433

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.18  E-value=1.1e-05  Score=71.17  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=24.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .|.+|+|.|+|||||||+++.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999999998

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.18  E-value=2.6e-06  Score=77.30  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|.+|+|.|+|||||||+++.|++.+++       .+++.|++-
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~-------~~i~~d~~~   40 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQL-------AHISAGDLL   40 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC-------EECCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-------ceecHHHHH
Confidence            5678999999999999999999999955       889877643

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.18  E-value=1.9e-06  Score=82.26  Aligned_cols=71  Identities=18%  Similarity=0.278  Sum_probs=59.1

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+.|||++|++++++..+...+..+++.                      .+.|.++|++|+||+||||+++.+++.+
T Consensus        15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~----------------------~~~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           15 ILEQKYRPSTIDECILPAFDKETFKSITSK----------------------GKIPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             SHHHHSCCCSTTTSCCCHHHHHHHHHHHHT----------------------TCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             hHHHhhCCCCHHHHhCcHHHHHHHHHHHHc----------------------CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            457889999999999999888777776663                      4567789999999999999999999998


Q ss_pred             cccCCCCCeEEEeCCccc
Q 015774          237 FWSGAATNAVVVEADAFK  254 (400)
Q Consensus       237 g~~~~~~~avvIdaDefR  254 (400)
                      +.     +++.+++.++.
T Consensus        73 ~~-----~~~~i~~~~~~   85 (324)
T 3u61_B           73 NA-----DMMFVNGSDCK   85 (324)
T ss_dssp             TE-----EEEEEETTTCC
T ss_pred             CC-----CEEEEcccccC
Confidence            54     67778877665

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.17  E-value=7.5e-06  Score=87.55  Aligned_cols=95  Identities=12%  Similarity=0.049  Sum_probs=60.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc---cccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA  286 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l---g~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~  286 (400)
                      ..|.+|+|+|+|||||||+++.|++.+   |+     .++.+|.|.+|.      .+... ..-.....     ....+.
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~-----~~v~lDgD~iR~------~L~~~-~~fs~~dr-----ee~~r~  112 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-----PCYTLDGDNIRQ------GLNKN-LGFSPEDR-----EENVRR  112 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-----CEEEESHHHHTT------TTTTT-CCSSHHHH-----HHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-----eEEEechHHhhh------ccCcc-ccCChhhh-----HHHHHH
Confidence            368899999999999999999999998   54     677888777662      22221 01011111     111122


Q ss_pred             HHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774          287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR  321 (400)
Q Consensus       287 ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar  321 (400)
                      +..++..+++.|..||.+.+......++.+.++++
T Consensus       113 i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~  147 (630)
T 1x6v_B          113 IAEVAKLFADAGLVCITSFISPYTQDRNNARQIHE  147 (630)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHH
Confidence            23456667889999998865544445666666554

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.16  E-value=1e-06  Score=75.40  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=31.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|+|+|+|||||||+++.|++.+++       .+++.|.+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~-------~~i~~d~~~   36 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKY-------PIIKGSSFE   36 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCC-------CEEECCCHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC-------eeecCcccc
Confidence            37899999999999999999999965       789999876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.16  E-value=5.5e-06  Score=72.22  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|+|+|+|||||||+++.|++.+++       .+++.|.+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~-------~~~d~d~~~   39 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDL-------VFLDSDFLI   39 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCC-------CEEcccHHH
Confidence            5889999999999999999999965       899988765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.11  E-value=7.6e-07  Score=78.05  Aligned_cols=35  Identities=23%  Similarity=0.180  Sum_probs=31.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+|+|+|+|||||||+++.|++.+|+       .+++.|++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~-------~~id~D~~~   37 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGV-------GLLDTDVAI   37 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCC-------CEEeCchHH
Confidence            35899999999999999999999966       699988765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.07  E-value=1.5e-06  Score=75.12  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+|+|.|+|||||||+++.|+..+++       .++++|.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~-------~~id~d~~~   39 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-------EFYDSDQEI   39 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTC-------EEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEeccHHH
Confidence            468999999999999999999999854       889988654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.07  E-value=1.3e-06  Score=75.61  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -+.|+|.|+|||||||+++.|++.+|+       .++|+|++.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~-------~~id~D~~~   42 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKL-------EVLDTDMII   42 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEChHHH
Confidence            458999999999999999999999976       689988764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.06  E-value=4.7e-07  Score=81.46  Aligned_cols=28  Identities=29%  Similarity=0.406  Sum_probs=25.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+.+|+|+|+|||||||+++.|++.+
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            4567899999999999999999999987

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.03  E-value=1e-05  Score=73.10  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .|+|.|+|||||||+++.|++.+|+       .++++|++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~-------~~i~~d~~   34 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGI-------PQISTGDM   34 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC-------CEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------eEEeHHHH
Confidence            4799999999999999999999865       78887654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.03  E-value=1.7e-05  Score=75.68  Aligned_cols=37  Identities=22%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ...|.+|.|+|+|||||||+++.|+ .+|+       .+|++|.+
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~-------~~id~D~~  108 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGA-------YIIDSDHL  108 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTC-------EEEEHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCC-------cEEehhHH
Confidence            3568899999999999999999999 5754       79999887

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.02  E-value=4.1e-06  Score=77.98  Aligned_cols=47  Identities=26%  Similarity=0.362  Sum_probs=37.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhcccc---CCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~---~~~~~avvIdaDefRe  255 (400)
                      ...|.+|.|+|+|||||||+++.|++.+|++   ..+.++.+++.|+|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            4578899999999999999999999998752   0123567999999874

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.02  E-value=2.3e-06  Score=74.85  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..+.+|+++|+|||||||+++.|++.+++       .+++.|++.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~-------~~~~~d~~~   46 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGL-------KYINVGDLA   46 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCC-------eEEEHHHHH
Confidence            45668899999999999999999999955       788877654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.99  E-value=4.6e-05  Score=66.55  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=32.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc---cccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l---g~~~~~~~avvIdaDefR  254 (400)
                      .++.+|++.|+|||||||+++.|+..+   |+     .++.+++|.++
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~-----~~i~~d~~~~~   45 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-----PCYTLDGDNIR   45 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-----CEEEEEHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCC-----cEEEECChHHH
Confidence            357899999999999999999999987   43     56677877665

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.99  E-value=2.9e-06  Score=74.81  Aligned_cols=38  Identities=29%  Similarity=0.481  Sum_probs=33.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ...|.+|.|+|+|||||||+++.|++. |+       .++|+|++.
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~-------~~id~d~~~   42 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GY-------PVLDLDALA   42 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TC-------CEEEHHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CC-------EEEcccHHH
Confidence            457889999999999999999999998 76       799999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.94  E-value=1.2e-05  Score=74.31  Aligned_cols=76  Identities=25%  Similarity=0.263  Sum_probs=53.8

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774          163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA  242 (400)
Q Consensus       163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~  242 (400)
                      ++..|+++.+.+.+++.+..+++.   +..      ......+.  .+.|.-+++.|+||+||||+++.++..++.    
T Consensus         7 ~~~~~~~i~G~~~~~~~l~~~~~~---~~~------~~~~~~~~--~~~~~~vll~G~~GtGKT~la~~la~~~~~----   71 (257)
T 1lv7_A            7 IKTTFADVAGCDEAKEEVAELVEY---LRE------PSRFQKLG--GKIPKGVLMVGPPGTGKTLLAKAIAGEAKV----   71 (257)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHHHH---HHC------GGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTC----
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHH---HhC------HHHHHHcC--CCCCCeEEEECcCCCCHHHHHHHHHHHcCC----
Confidence            467899999999999988888765   221      11111111  234556899999999999999999999853    


Q ss_pred             CCeEEEeCCccc
Q 015774          243 TNAVVVEADAFK  254 (400)
Q Consensus       243 ~~avvIdaDefR  254 (400)
                       ..+.+++.++.
T Consensus        72 -~~~~i~~~~~~   82 (257)
T 1lv7_A           72 -PFFTISGSDFV   82 (257)
T ss_dssp             -CEEEECSCSST
T ss_pred             -CEEEEeHHHHH
Confidence             56778877664

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.93  E-value=2.6e-05  Score=77.17  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|.+|+|+|+|||||||++..|+++++       ..+|+.|.+.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~-------~~iis~Ds~q   40 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALP-------CELISVDSAL   40 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC-------EEEEEECTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC-------CcEEeccchh
Confidence            356899999999999999999999984       4899999874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.90  E-value=1.9e-05  Score=72.20  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      ..|+++.+.+.++..+..+++.++.      +   ......  ....|.-+++.|+||+||||+|+.+++.++.     .
T Consensus         3 ~~~~~i~G~~~~~~~l~~~~~~~~~------~---~~~~~~--g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~   66 (262)
T 2qz4_A            3 VSFKDVAGMHEAKLEVREFVDYLKS------P---ERFLQL--GAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----P   66 (262)
T ss_dssp             CCTTSSCSCHHHHHHHHHHHHHHHC------C---C--------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----C
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHHC------H---HHHHHc--CCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----C
Confidence            4688899999998888888765211      0   000000  1245667899999999999999999999854     6


Q ss_pred             eEEEeCCccc
Q 015774          245 AVVVEADAFK  254 (400)
Q Consensus       245 avvIdaDefR  254 (400)
                      .+.++..++.
T Consensus        67 ~~~~~~~~~~   76 (262)
T 2qz4_A           67 FLAMAGAEFV   76 (262)
T ss_dssp             EEEEETTTTS
T ss_pred             EEEechHHHH
Confidence            7778877664

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.89  E-value=3.3e-05  Score=76.95  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=33.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.|.+|+|+||+||||||++..||++++       ..+||+|.+.
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-------~eiIs~Ds~q   75 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-------LEVINSDKMQ   75 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC-------EEEEECCSST
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC-------CcEEcccccc
Confidence            3567999999999999999999999994       4899999983

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.87  E-value=3.6e-05  Score=71.44  Aligned_cols=29  Identities=21%  Similarity=0.459  Sum_probs=26.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ...+.+|++.|+|||||||+++.|++.++
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            34788999999999999999999999983

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.87  E-value=7.7e-06  Score=73.79  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=31.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|.+|.|+|++||||||+++.|++ +|+       .++++|.+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~-------~~id~D~~~   38 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGI-------NVIDADIIA   38 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTC-------EEEEHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCC-------EEEEccHHH
Confidence            578999999999999999999998 754       899988763

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.86  E-value=6.9e-06  Score=73.94  Aligned_cols=36  Identities=25%  Similarity=0.484  Sum_probs=31.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+|.|.|+|||||||+++.|++.+|+       .++++|++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~-------~~~d~g~i~   40 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQW-------HLLDSGAIY   40 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC-------CcccCccee
Confidence            568999999999999999999999865       789988765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.86  E-value=7e-06  Score=74.74  Aligned_cols=38  Identities=26%  Similarity=0.292  Sum_probs=33.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ....+|.|+|++||||||+++.|++.+|+       .+||+|.+-
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~-------~vid~D~~~   47 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA-------HVVNVDRIG   47 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCC-------EEEECcHHH
Confidence            34568999999999999999999999855       899999874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.85  E-value=3.4e-05  Score=73.78  Aligned_cols=84  Identities=18%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+.+|+..|+.+++...+++.+..+++..+.-                  ...+.-+++.|+||+||||+|+.+++.+
T Consensus        18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~------------------~~~~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR------------------NECLDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT------------------TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc------------------CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999988888874321                  1234457999999999999999999998


Q ss_pred             cccCCCCCeEEEeCCccccchHHHHHH
Q 015774          237 FWSGAATNAVVVEADAFKETDVIYRAL  263 (400)
Q Consensus       237 g~~~~~~~avvIdaDefRe~D~irk~L  263 (400)
                      +.     ..+.++...+.........+
T Consensus        80 ~~-----~~~~~~~~~~~~~~~~~~~~  101 (338)
T 3pfi_A           80 SA-----NIKTTAAPMIEKSGDLAAIL  101 (338)
T ss_dssp             TC-----CEEEEEGGGCCSHHHHHHHH
T ss_pred             CC-----CeEEecchhccchhHHHHHH
Confidence            54     67778877665433333333

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.85  E-value=3.7e-05  Score=76.17  Aligned_cols=83  Identities=19%  Similarity=0.242  Sum_probs=52.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc---chH-----HHHHHhcCCC------CChhhHhHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE---TDV-----IYRALSSKGH------HDDMLQTAE  277 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe---~D~-----irk~L~~~G~------~~d~~~aa~  277 (400)
                      |.+|+|+||+||||||++..|++.+       +..+|++|.+--   .|.     --..+.+..+      ..+..+.+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~   75 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL-------NGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVA   75 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT-------TEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC-------ccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHH
Confidence            5689999999999999999999998       458999998721   100     0011111100      011122222


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcEEEEC
Q 015774          278 LVHQSSTDAASSLLVTALNEGRDVIMDG  305 (400)
Q Consensus       278 ~v~~~~~~~ae~lie~AL~eG~dVIIDg  305 (400)
                      ..    ...+...++...+.|..+||-|
T Consensus        76 ~F----~~~a~~~i~~i~~~gk~pIlVG   99 (322)
T 3exa_A           76 DF----QDLATPLITEIHERGRLPFLVG   99 (322)
T ss_dssp             HH----HHHHHHHHHHHHHTTCEEEEES
T ss_pred             HH----HHHHHHHHHHHHhCCCcEEEEc
Confidence            22    3455668888899999877774

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.84  E-value=0.00011  Score=67.88  Aligned_cols=93  Identities=17%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAAS  288 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae  288 (400)
                      .+.+|++.|++||||||+++.|++.+.  ..+..++... ++.=.--..+++.+.......-..++....+... .....
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~   82 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLA   82 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999983  2333444332 1100000113344433211010112222222211 23344


Q ss_pred             HHHHHHHhCCCcEEEEC
Q 015774          289 SLLVTALNEGRDVIMDG  305 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDg  305 (400)
                      ..+..++++|..||+|-
T Consensus        83 ~~i~p~l~~g~~Vi~DR   99 (213)
T 4edh_A           83 GVIRPALARGAVVLCDR   99 (213)
T ss_dssp             HTHHHHHHTTCEEEEES
T ss_pred             HHHHHHHHCCCEEEECc
Confidence            56888999999999993

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.84  E-value=6.4e-06  Score=73.52  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+|.|.|+|||||||+++.|+. +|+       .++|+|.+.
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~-------~~id~d~~~   36 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGV-------PLVDADVVA   36 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTC-------CEEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCC-------cccchHHHH
Confidence            35799999999999999999987 754       789988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.83  E-value=2.2e-05  Score=68.80  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.+++..|+.+++.......+..++..                      .+.|..+++.|+||+||||+++.+++.+++
T Consensus        14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           14 ARKWRPQTFADVVGQEHVLTALANGLSL----------------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             HHHTCCCSGGGCCSCHHHHHHHHHHHHH----------------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             hhccCCccHHHHhCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            5678999999999888777766666554                      234568999999999999999999998753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.82  E-value=1.7e-05  Score=70.93  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=34.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ...+.+|.|+|+|||||||+++.|+..+      .++.+++.|.+.
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~------~~~~~i~~D~~~   57 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHL------PNCSVISQDDFF   57 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTS------TTEEEEEGGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhc------CCcEEEeCCccc
Confidence            4567899999999999999999999987      145899999875

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.81  E-value=1.3e-05  Score=75.30  Aligned_cols=72  Identities=22%  Similarity=0.315  Sum_probs=52.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..+.+||..|+.+++.+.+...+..+++.                      .+.|. +++.|+||+||||+++.+++.+.
T Consensus        15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT----------------------GSMPH-LLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HHHHTCCCSTTTCCSCHHHHHHHHHHHHH----------------------TCCCE-EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             hhhccCCCCHHHhhCCHHHHHHHHHHHHc----------------------CCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence            35679999999999988887777766654                      23445 89999999999999999999863


Q ss_pred             ccCCCCCeEEEeCCc
Q 015774          238 WSGAATNAVVVEADA  252 (400)
Q Consensus       238 ~~~~~~~avvIdaDe  252 (400)
                      .+......+.+++.+
T Consensus        72 ~~~~~~~~~~~~~~~   86 (327)
T 1iqp_A           72 GENWRHNFLELNASD   86 (327)
T ss_dssp             GGGHHHHEEEEETTC
T ss_pred             CCcccCceEEeeccc
Confidence            210011245666544

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.81  E-value=1.8e-05  Score=76.50  Aligned_cols=56  Identities=21%  Similarity=0.361  Sum_probs=46.5

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+.|||+.|.++.++..+...+...++.                      .+.|. +++.|+||+||||+++.++..+
T Consensus        15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~----------------------g~~~~-~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           15 WVEKYRPETLDEVYGQNEVITTVRKFVDE----------------------GKLPH-LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             HHHHTCCSSGGGCCSCHHHHHHHHHHHHT----------------------TCCCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred             hHHHhCCCcHHHhcCcHHHHHHHHHHHhc----------------------CCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999988877777666654                      33455 8999999999999999999986

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.78  E-value=5e-05  Score=66.08  Aligned_cols=73  Identities=19%  Similarity=0.290  Sum_probs=48.1

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.+++..|+.+++.......+..+++.                      ...|. +++.|+||+||||+++.+++.+..
T Consensus         8 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~   64 (226)
T 2chg_A            8 VEKYRPRTLDEVVGQDEVIQRLKGYVER----------------------KNIPH-LLFSGPPGTGKTATAIALARDLFG   64 (226)
T ss_dssp             HHHTSCSSGGGCCSCHHHHHHHHHHHHT----------------------TCCCC-EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             HHhcCCCCHHHHcCcHHHHHHHHHHHhC----------------------CCCCe-EEEECCCCCCHHHHHHHHHHHHhc
Confidence            3568888999988877766655555433                      11222 899999999999999999987621


Q ss_pred             cCCCCCeEEEeCCccc
Q 015774          239 SGAATNAVVVEADAFK  254 (400)
Q Consensus       239 ~~~~~~avvIdaDefR  254 (400)
                      .......+.++.....
T Consensus        65 ~~~~~~~~~~~~~~~~   80 (226)
T 2chg_A           65 ENWRDNFIEMNASDER   80 (226)
T ss_dssp             GGGGGGEEEEETTCTT
T ss_pred             cccccceEEecccccc
Confidence            1111234556654433

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.77  E-value=9.7e-06  Score=71.68  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.|+|+|||||||+++.|++.+|+       .+++.|.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~-------~~~d~d~~~   37 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGV-------PYLSSGLLY   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC-------ceeccchHH
Confidence            8999999999999999999999965       799988776

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.77  E-value=8.6e-05  Score=65.05  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +|+|.|+|||||||+++.|++.+++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC
Confidence            6899999999999999999999954

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.77  E-value=9.2e-05  Score=69.33  Aligned_cols=94  Identities=17%  Similarity=0.099  Sum_probs=53.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE-E-eCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-V-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TD  285 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv-I-daDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~  285 (400)
                      ...+.+|++.|++||||||+++.|++.++. ..+.++++ . .++.=.-...+++.+......+  ..+....+... ..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~-~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~--~~~e~llf~a~R~~   94 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE-IYGVNNVVLTREPGGTLLNESVRNLLFKAQGLD--SLSELLFFIAMRRE   94 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCC--HHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh-ccCceeeEeeeCCCCChHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHH
Confidence            467899999999999999999999998832 02334444 2 2322110112334444321111  11111121111 33


Q ss_pred             HHHHHHHHHHhCCCcEEEEC
Q 015774          286 AASSLLVTALNEGRDVIMDG  305 (400)
Q Consensus       286 ~ae~lie~AL~eG~dVIIDg  305 (400)
                      ....++..++++|..||+|-
T Consensus        95 ~~~~~I~paL~~g~~VI~DR  114 (223)
T 3ld9_A           95 HFVKIIKPSLMQKKIVICDR  114 (223)
T ss_dssp             HHHHTHHHHHHTTCEEEEES
T ss_pred             HHHHHHHHHHhcCCeEEEcc
Confidence            34456778999999999995

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.75  E-value=9.9e-05  Score=72.95  Aligned_cols=38  Identities=16%  Similarity=0.256  Sum_probs=33.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..|.+|+|+||+||||||++..|++.+       +..+|++|.+-
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~q   45 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKIL-------PVELISVDSAL   45 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEECCTTT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhC-------CCcEEeccccc
Confidence            457899999999999999999999998       45899999863

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.73  E-value=3.5e-05  Score=73.95  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.|||..|+.+++...+...+...++.                      .+.|..+++.|+||+||||+++.+++.+++
T Consensus         7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~----------------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A            7 ARKWRPQTFADVVGQEHVLTALANGLSL----------------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             HHHTCCCSTTTSCSCHHHHHHHHHHHHH----------------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             HHhhCCCchhhccCcHHHHHHHHHHHHh----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5679999999999988877777666644                      345668999999999999999999998854

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.70  E-value=8.7e-06  Score=78.14  Aligned_cols=56  Identities=18%  Similarity=0.352  Sum_probs=43.3

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.|||+.|+.++++..+...+..++..                     ..+.|. +++.|+||+||||+++.++..+
T Consensus         5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~~---------------------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E            5 VDKYRPKSLNALSHNEELTNFLKSLSDQ---------------------PRDLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             TTTTCCCSGGGCCSCHHHHHHHHTTTTC---------------------TTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             hhccCCCCHHHhcCCHHHHHHHHHHHhh---------------------CCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999988776655444310                     134566 8999999999999999999965

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.70  E-value=6.7e-05  Score=70.43  Aligned_cols=78  Identities=15%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      .+++..|+.+.+...+++.+..+++.-..  .      ..+...+   ...|..+++.|+||+||||+|+.++..++.  
T Consensus        14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~--~------~~~~~~~---~~~~~~vll~Gp~GtGKT~la~~la~~~~~--   80 (297)
T 3b9p_A           14 GGAKVEWTDIAGQDVAKQALQEMVILPSV--R------PELFTGL---RAPAKGLLLFGPPGNGKTLLARAVATECSA--   80 (297)
T ss_dssp             CSSCCCGGGSCCCHHHHHHHHHHTHHHHH--C------GGGSCGG---GCCCSEEEEESSSSSCHHHHHHHHHHHTTC--
T ss_pred             CCCCCCHHHhCChHHHHHHHHHHHHhhhh--C------HHHHhcC---CCCCCeEEEECcCCCCHHHHHHHHHHHhCC--
Confidence            34567899999999998888887764111  0      1111111   235678999999999999999999999853  


Q ss_pred             CCCCeEEEeCCccc
Q 015774          241 AATNAVVVEADAFK  254 (400)
Q Consensus       241 ~~~~avvIdaDefR  254 (400)
                         ..+.+++.++.
T Consensus        81 ---~~~~i~~~~l~   91 (297)
T 3b9p_A           81 ---TFLNISAASLT   91 (297)
T ss_dssp             ---EEEEEESTTTS
T ss_pred             ---CeEEeeHHHHh
Confidence               56667766554

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.68  E-value=8.2e-05  Score=76.33  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=54.4

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      -+|++|.+-+.+++.+.+.|+--..  .      ..+...+  .-+.|.-|||.||||+|||++|+++|.++++     +
T Consensus       178 v~~~digGl~~~k~~l~e~v~~pl~--~------p~~f~~~--g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-----~  242 (437)
T 4b4t_L          178 ITFDGIGGLTEQIRELREVIELPLK--N------PEIFQRV--GIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-----N  242 (437)
T ss_dssp             SCSGGGCSCHHHHHHHHHHHHHHHH--C------HHHHHHH--CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----E
T ss_pred             CChhHhCChHHHHHHHHHHHHHHHh--C------HHHHHhC--CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----C
Confidence            5789999988999888888774111  0      0111111  1367889999999999999999999999965     6


Q ss_pred             eEEEeCCccc
Q 015774          245 AVVVEADAFK  254 (400)
Q Consensus       245 avvIdaDefR  254 (400)
                      .+.+++.++.
T Consensus       243 ~~~v~~s~l~  252 (437)
T 4b4t_L          243 FIFSPASGIV  252 (437)
T ss_dssp             EEEEEGGGTC
T ss_pred             EEEEehhhhc
Confidence            7777766654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.68  E-value=5.1e-05  Score=71.71  Aligned_cols=82  Identities=23%  Similarity=0.235  Sum_probs=60.0

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      .+|+..|+.+++.....+.+..+++....-                  ...+..+++.|+||+||||+|+.+++.++.  
T Consensus         5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~------------------~~~~~~vll~G~~GtGKT~la~~i~~~~~~--   64 (324)
T 1hqc_A            5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR------------------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV--   64 (324)
T ss_dssp             CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH------------------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC--
T ss_pred             ccCcccHHHhhCHHHHHHHHHHHHHHHHcc------------------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC--
Confidence            478899999999988888888777763221                  123456789999999999999999999853  


Q ss_pred             CCCCeEEEeCCccccchHHHHHHhc
Q 015774          241 AATNAVVVEADAFKETDVIYRALSS  265 (400)
Q Consensus       241 ~~~~avvIdaDefRe~D~irk~L~~  265 (400)
                         ..+.++...+.....+...+..
T Consensus        65 ---~~~~~~~~~~~~~~~l~~~l~~   86 (324)
T 1hqc_A           65 ---NLRVTSGPAIEKPGDLAAILAN   86 (324)
T ss_dssp             ---CEEEECTTTCCSHHHHHHHHTT
T ss_pred             ---CEEEEeccccCChHHHHHHHHH
Confidence               6677887776544444444433

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.68  E-value=1.8e-05  Score=70.31  Aligned_cols=33  Identities=30%  Similarity=0.332  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.|+|+|||||||+++.|+. +|+       .+++.|.+.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~-------~~i~~d~~~   35 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGA-------YVLDADKLI   35 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTC-------EEEEHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCC-------EEEEccHHH
Confidence            689999999999999999999 754       899988864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00013  Score=74.24  Aligned_cols=75  Identities=13%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHH-HHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEE-MKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA  242 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee-~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~  242 (400)
                      .-+|++|-+-+.+++.+.+.|+- ++.         -++...+  .-+.|.-+||.||||+|||++|+++|.++++    
T Consensus       144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~---------pe~f~~~--gi~~prGvLL~GPPGTGKTllAkAiA~e~~~----  208 (405)
T 4b4t_J          144 DSTYDMVGGLTKQIKEIKEVIELPVKH---------PELFESL--GIAQPKGVILYGPPGTGKTLLARAVAHHTDC----  208 (405)
T ss_dssp             SCCGGGSCSCHHHHHHHHHHTHHHHHC---------HHHHHHH--TCCCCCCEEEESCSSSSHHHHHHHHHHHHTC----
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHhC---------HHHHHhC--CCCCCCceEEeCCCCCCHHHHHHHHHHhhCC----
Confidence            35899999988888888887763 110         0000000  1356788999999999999999999999965    


Q ss_pred             CCeEEEeCCccc
Q 015774          243 TNAVVVEADAFK  254 (400)
Q Consensus       243 ~~avvIdaDefR  254 (400)
                       +.+.+++.++.
T Consensus       209 -~f~~v~~s~l~  219 (405)
T 4b4t_J          209 -KFIRVSGAELV  219 (405)
T ss_dssp             -EEEEEEGGGGS
T ss_pred             -CceEEEhHHhh
Confidence             66777766554

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00011  Score=75.30  Aligned_cols=76  Identities=17%  Similarity=0.136  Sum_probs=54.9

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      ..+|++|.+-+.+++.+.+.|+--..  .      ..+...  ..-+.|.-|||.||||+|||++|+++|.++++     
T Consensus       177 ~~t~~digGl~~~k~~l~e~v~~pl~--~------pe~f~~--~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-----  241 (434)
T 4b4t_M          177 TETYSDVGGLDKQIEELVEAIVLPMK--R------ADKFKD--MGIRAPKGALMYGPPGTGKTLLARACAAQTNA-----  241 (434)
T ss_dssp             SCCGGGSCSCHHHHHHHHHHTHHHHH--C------SHHHHH--HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----
T ss_pred             CCChHhcCcHHHHHHHHHHHHHHHHh--C------HHHHHh--CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----
Confidence            36899999999999888877764111  0      000000  01367889999999999999999999999965     


Q ss_pred             CeEEEeCCccc
Q 015774          244 NAVVVEADAFK  254 (400)
Q Consensus       244 ~avvIdaDefR  254 (400)
                      +.+.+++.++.
T Consensus       242 ~f~~v~~s~l~  252 (434)
T 4b4t_M          242 TFLKLAAPQLV  252 (434)
T ss_dssp             EEEEEEGGGGC
T ss_pred             CEEEEehhhhh
Confidence            66777766554

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.65  E-value=5.2e-05  Score=74.43  Aligned_cols=81  Identities=21%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ++..+++..|+.+.+...++..+.+++..-  +..      ..+...+   ...|.-+||.|+||+||||+|+.++..++
T Consensus        74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~--~~~------~~~~~~~---~~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A           74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWP--MLR------PDIFTGL---RGPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHH--HHC------TTTSCGG---GSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             cccCCCCCCHHHhCChHHHHHHHHHHHHHH--hhC------hHhHhhc---cCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            334456778899999888888887777641  110      1111111   24567899999999999999999999985


Q ss_pred             ccCCCCCeEEEeCCccc
Q 015774          238 WSGAATNAVVVEADAFK  254 (400)
Q Consensus       238 ~~~~~~~avvIdaDefR  254 (400)
                      .     ..+.+++.++.
T Consensus       143 ~-----~~~~i~~~~l~  154 (357)
T 3d8b_A          143 A-----TFFSISASSLT  154 (357)
T ss_dssp             C-----EEEEEEGGGGC
T ss_pred             C-----eEEEEehHHhh
Confidence            4     66777776654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.65  E-value=5.6e-05  Score=67.87  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ...+.+|.|+|++||||||+++.|+..+.  ..+..+.+++.|.+..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d~~~~   63 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMDDHIV   63 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGCC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccCcccC
Confidence            35688999999999999999999998762  2244677788888763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.65  E-value=2e-06  Score=78.44  Aligned_cols=83  Identities=20%  Similarity=0.339  Sum_probs=48.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAE  277 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg--~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~  277 (400)
                      .|+|+||+||||||+++.|.+++.  +              +.+|.++.+++.++|.      +.+... .   +..++.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~------~~i~~g-~---flE~~~   72 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK------SMIKNN-E---FIEWAQ   72 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH------HHHHTT-C---EEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHH------HHHHcC-C---EEEEEE
Confidence            378999999999999999988752  1              2335567777766664      223221 1   000000


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcEEEECcC
Q 015774          278 LVHQSSTDAASSLLVTALNEGRDVIMDGTL  307 (400)
Q Consensus       278 ~v~~~~~~~ae~lie~AL~eG~dVIIDgT~  307 (400)
                       +|...+.....-++..+++|.+||+|...
T Consensus        73 -~~g~~YGt~~~~v~~~l~~g~~vil~id~  101 (186)
T 1ex7_A           73 -FSGNYYGSTVASVKQVSKSGKTCILDIDM  101 (186)
T ss_dssp             -ETTEEEEEEHHHHHHHHHHTSEEEEECCH
T ss_pred             -EcCceeeeecceeeehhhCCCEEEecCCH
Confidence             00101111112345588899999999753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.63  E-value=4.8e-06  Score=76.81  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=24.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+.+|+|.||+||||||+++.|+..+
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            356789999999999999999999876

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.63  E-value=3.7e-05  Score=75.65  Aligned_cols=84  Identities=18%  Similarity=0.157  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHH
Q 015774          154 LKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIM  233 (400)
Q Consensus       154 ~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA  233 (400)
                      +.+.+...+.+.+|+++.+...+++.+.+.+..-..  .      ..+..   .....|.-|||.|+||+||||+|+.++
T Consensus        37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~--~------~~~~~---~~~~~~~~iLL~GppGtGKT~la~ala  105 (355)
T 2qp9_X           37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVK--F------PHLFK---GNRKPTSGILLYGPPGTGKSYLAKAVA  105 (355)
T ss_dssp             ----------CCCGGGSCCGGGHHHHHHHHTHHHHH--C------GGGGC---SSCCCCCCEEEECSTTSCHHHHHHHHH
T ss_pred             HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHh--C------HHHHh---cCCCCCceEEEECCCCCcHHHHHHHHH
Confidence            334566677788999999999999988887764111  0      01111   112455678899999999999999999


Q ss_pred             HhccccCCCCCeEEEeCCcc
Q 015774          234 KESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       234 ~~lg~~~~~~~avvIdaDef  253 (400)
                      ..++.     +.+.+++.++
T Consensus       106 ~~~~~-----~~~~v~~~~l  120 (355)
T 2qp9_X          106 TEANS-----TFFSVSSSDL  120 (355)
T ss_dssp             HHHTC-----EEEEEEHHHH
T ss_pred             HHhCC-----CEEEeeHHHH
Confidence            99854     5566665443

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.62  E-value=2.1e-05  Score=70.65  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=32.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |.+|.|+|+|||||||+++.|++.+|+       .+++.|.+.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~-------~~~~~d~~~   38 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSM-------IYVDTGAMY   38 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC-------EEEEHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC-------ceecCChHH
Confidence            678999999999999999999999865       899988764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.62  E-value=2.4e-05  Score=73.78  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=32.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..|.+|.+.|+|||||||+++.|++.+|+       .+++.|.+.
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~-------~~~d~g~~~   44 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGA-------RYLDTGAMY   44 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CcccCCcHH
Confidence            45789999999999999999999999965       789988764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.61  E-value=0.00012  Score=68.25  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.+|.|.|++||||||+++.||+++|+       .++|.|.++
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~-------~~~d~~~~~   49 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGI-------HFYDDDILK   49 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTC-------EEECHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCC-------cEEcHHHHH
Confidence            4679999999999999999999999976       789988766

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.61  E-value=8.7e-05  Score=75.68  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.+|+|+||+||||||++..|++.++       ..+|++|.+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~-------~~iis~Ds~   36 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN-------GEVINSDSM   36 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT-------EEEEECCTT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC-------CeEeecCcc
Confidence            56899999999999999999999984       478999984

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.61  E-value=2.4e-05  Score=72.14  Aligned_cols=76  Identities=20%  Similarity=0.264  Sum_probs=50.2

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      ...+.+|+++.+.+.++..+..++..+..         ..+...+.  -..|.-+++.|+||+||||+++.++..++   
T Consensus         9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~---------~~~~~~~~--~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---   74 (254)
T 1ixz_A            9 EAPKVTFKDVAGAEEAKEELKEIVEFLKN---------PSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEAR---   74 (254)
T ss_dssp             CCCSCCGGGCCSCHHHHHHHHHHHHHHHC---------HHHHHHTT--CCCCSEEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred             CCCCCCHHHhCCcHHHHHHHHHHHHHHHC---------HHHHHHcC--CCCCCeEEEECCCCCCHHHHHHHHHHHhC---
Confidence            34456888888888888887777665321         01111111  12233489999999999999999999874   


Q ss_pred             CCCCeEEEeCCc
Q 015774          241 AATNAVVVEADA  252 (400)
Q Consensus       241 ~~~~avvIdaDe  252 (400)
                        .+.+.+++.+
T Consensus        75 --~~~i~~~~~~   84 (254)
T 1ixz_A           75 --VPFITASGSD   84 (254)
T ss_dssp             --CCEEEEEHHH
T ss_pred             --CCEEEeeHHH
Confidence              3667776543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.61  E-value=2.9e-05  Score=71.30  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..+.+|.|+|+|||||||+++.|++.+|+       .++++|.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~-------~~~d~d~~~   51 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF-------TYLDTGAMY   51 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCC-------ceecCCCee
Confidence            46779999999999999999999999965       799988775

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.60  E-value=4.6e-05  Score=71.39  Aligned_cols=55  Identities=16%  Similarity=0.298  Sum_probs=44.9

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+||..|+.+++.+.+...+..++..                      .+.|. +++.|+||+||||+++.+++.+
T Consensus        12 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           12 VEKYRPQVLSDIVGNKETIDRLQQIAKD----------------------GNMPH-MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             HHHTCCSSGGGCCSCTHHHHHHHHHHHS----------------------CCCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHCCHHHHHHHHHHHHc----------------------CCCCe-EEEECcCCCCHHHHHHHHHHHh
Confidence            5679999999999988877766666543                      23455 8999999999999999999986

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00017  Score=73.75  Aligned_cols=75  Identities=19%  Similarity=0.180  Sum_probs=53.9

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      -+|++|.+-+.+++.+.+.++-...  .      ..+...+  .-+.|.-||+.||||+|||++|+++|.+++.     +
T Consensus       169 v~~~digGl~~~k~~l~e~v~~pl~--~------p~~~~~~--g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-----~  233 (428)
T 4b4t_K          169 VTYADVGGLDMQKQEIREAVELPLV--Q------ADLYEQI--GIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-----A  233 (428)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHHHHH--C------HHHHHHH--CCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-----E
T ss_pred             CCHHHhccHHHHHHHHHHHHHHHHh--C------HHHHHhC--CCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----C
Confidence            5899999988888888887764111  0      0111111  1367889999999999999999999999965     6


Q ss_pred             eEEEeCCccc
Q 015774          245 AVVVEADAFK  254 (400)
Q Consensus       245 avvIdaDefR  254 (400)
                      .+.+++.++.
T Consensus       234 ~~~v~~~~l~  243 (428)
T 4b4t_K          234 FIRVNGSEFV  243 (428)
T ss_dssp             EEEEEGGGTC
T ss_pred             eEEEecchhh
Confidence            6777765554

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00016  Score=74.78  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             ccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCE
Q 015774          134 SHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPV  213 (400)
Q Consensus       134 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~  213 (400)
                      ++.++.|...|-.+..+.-.  .+-++..=.-+|++|.+-+.+++.+.+.|+--..  .      ..+...+  .-+.|.
T Consensus       177 ~~~~~~i~~~lp~~~d~~v~--~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~--~------pe~f~~~--Gi~ppr  244 (467)
T 4b4t_H          177 DRSKYNIELPLPPRIDPSVT--MMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLL--S------PERFATL--GIDPPK  244 (467)
T ss_dssp             CTTSCCCCCSSCSSSCCCCC--CCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHH--C------HHHHHHH--TCCCCS
T ss_pred             ccCcceeeecCCCccCCccc--eeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhc--C------HHHHHHC--CCCCCC
Confidence            44555666666655443111  0111111226899999999999988887763100  0      0000000  136788


Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -|||.||||+|||++|+++|.++++     +.+.+++.++.
T Consensus       245 GILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L~  280 (467)
T 4b4t_H          245 GILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSELV  280 (467)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGC
T ss_pred             ceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHhh
Confidence            9999999999999999999999965     66777766554

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.59  E-value=5.5e-05  Score=75.35  Aligned_cols=35  Identities=23%  Similarity=0.512  Sum_probs=32.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.+|+|+|++||||||++..|++.+       ++.+|+.|.+
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l-------~~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKF-------NGEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT-------TEEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHc-------CCceeccccc
Confidence            4699999999999999999999998       4589999998

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.58  E-value=0.00033  Score=65.98  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=51.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC-eEEEe-CCccccchHHHHHHhcCCCCChh-hHhHH-HHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVE-ADAFKETDVIYRALSSKGHHDDM-LQTAE-LVHQSSTD  285 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~-avvId-aDefRe~D~irk~L~~~G~~~d~-~~aa~-~v~~~~~~  285 (400)
                      ..+.+|++.|++||||||+++.|++.+..  .+.. ++... ++.=.-...+++.+......... ..+.. ++...-..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~--~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~  102 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ--NGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ  102 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999998842  3334 33332 11100012233334321000111 11111 12122234


Q ss_pred             HHHHHHHHHHhCCCcEEEE
Q 015774          286 AASSLLVTALNEGRDVIMD  304 (400)
Q Consensus       286 ~ae~lie~AL~eG~dVIID  304 (400)
                      .....+..++++|..||+|
T Consensus       103 ~~~~~I~paL~~g~~VI~D  121 (236)
T 3lv8_A          103 LVENVIKPALARGEWVVGD  121 (236)
T ss_dssp             HHHHTHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHcCCEEEEe
Confidence            4455788899999999999

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.00029  Score=72.42  Aligned_cols=77  Identities=10%  Similarity=0.125  Sum_probs=55.7

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774          163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA  242 (400)
Q Consensus       163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~  242 (400)
                      =.-+|++|-+-+.+++.+.+.|+--   ..  .   .++...+  .-+.|.-|||.||||+|||++|+++|.+++.    
T Consensus       177 p~v~~~DIgGld~~k~~L~e~v~~P---l~--~---pe~f~~~--Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~----  242 (437)
T 4b4t_I          177 PTESYSDIGGLESQIQEIKESVELP---LT--H---PELYEEM--GIKPPKGVILYGAPGTGKTLLAKAVANQTSA----  242 (437)
T ss_dssp             CCCCGGGTCSCHHHHHHHHHHHHHH---HH--C---CHHHHHH--TCCCCSEEEEESSTTTTHHHHHHHHHHHHTC----
T ss_pred             CCCcceecCcHHHHHHHHHHHHHHH---Hh--C---HHHHHhC--CCCCCCCCceECCCCchHHHHHHHHHHHhCC----
Confidence            3468999999999998888887741   10  0   0111101  1367889999999999999999999999965    


Q ss_pred             CCeEEEeCCccc
Q 015774          243 TNAVVVEADAFK  254 (400)
Q Consensus       243 ~~avvIdaDefR  254 (400)
                       +.+.+++.++.
T Consensus       243 -~fi~v~~s~l~  253 (437)
T 4b4t_I          243 -TFLRIVGSELI  253 (437)
T ss_dssp             -EEEEEESGGGC
T ss_pred             -CEEEEEHHHhh
Confidence             66777766654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.57  E-value=0.00011  Score=68.35  Aligned_cols=76  Identities=18%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      +-+|+.+.+.+.+++.+.+.+.....-        ..+...+  ....|.-+++.|+||+||||+++.++..++.     
T Consensus        13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~--------~~~~~~~--~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----   77 (285)
T 3h4m_A           13 NVRYEDIGGLEKQMQEIREVVELPLKH--------PELFEKV--GIEPPKGILLYGPPGTGKTLLAKAVATETNA-----   77 (285)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHC--------HHHHHHH--CCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhC--------HHHHHhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----
Confidence            357888888888888887776542110        0000000  0245667999999999999999999999853     


Q ss_pred             CeEEEeCCccc
Q 015774          244 NAVVVEADAFK  254 (400)
Q Consensus       244 ~avvIdaDefR  254 (400)
                      ..+.++..++.
T Consensus        78 ~~~~v~~~~~~   88 (285)
T 3h4m_A           78 TFIRVVGSELV   88 (285)
T ss_dssp             EEEEEEGGGGC
T ss_pred             CEEEEehHHHH
Confidence            66677766553

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.57  E-value=8.1e-05  Score=72.29  Aligned_cols=74  Identities=20%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .....+|++.|+...+...+...++..++..+.                  ....|..+++.|+||+||||+++.++..+
T Consensus        14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~------------------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKM------------------RGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH------------------HTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHh------------------cCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            345678999999999888777777777664211                  02345678999999999999999999998


Q ss_pred             cccCCCCCeEEEeCCcc
Q 015774          237 FWSGAATNAVVVEADAF  253 (400)
Q Consensus       237 g~~~~~~~avvIdaDef  253 (400)
                      +.     +....++..+
T Consensus        76 ~~-----~~~~~sg~~~   87 (334)
T 1in4_A           76 QT-----NIHVTSGPVL   87 (334)
T ss_dssp             TC-----CEEEEETTTC
T ss_pred             CC-----CEEEEechHh
Confidence            53     4444555443

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.57  E-value=0.00019  Score=67.21  Aligned_cols=91  Identities=20%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC----CCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHH-H
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA----ATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQ-S  282 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~----~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~-~  282 (400)
                      ...+.+|++.|++||||||+++.|++.+..  .    +..++... ++.=..-..+++.+... ...+  .+....+. .
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~--~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~-~~~~--~~~~llf~a~   96 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQE--RLGPAGRHVVVTREPGGTRLGETLREILLNQ-PMDL--ETEALLMFAG   96 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHHH--HHGGGTCCEEEEESSSSSHHHHHHHHHHHHS-CCCH--HHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHh--hccccceeeeeecCCCCChHHHHHHHHHHcC-CCCH--HHHHHHHHHH
Confidence            356789999999999999999999999832  1    22333332 11000001133333331 1111  11111111 1


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEE
Q 015774          283 STDAASSLLVTALNEGRDVIMD  304 (400)
Q Consensus       283 ~~~~ae~lie~AL~eG~dVIID  304 (400)
                      -+......+..++++|..||+|
T Consensus        97 R~~~~~~~i~p~l~~g~~VI~D  118 (227)
T 3v9p_A           97 RREHLALVIEPALARGDWVVSD  118 (227)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEe
Confidence            1333445788899999999999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.57  E-value=2.3e-05  Score=72.37  Aligned_cols=36  Identities=22%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .|.+|+|.|+|||||||+++.|++.+|+       ..++.|++
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~-------~~~~~G~i   61 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGL-------QHLSSGHF   61 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCC-------CCEEHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCC-------eEecHHHH
Confidence            4789999999999999999999999865       55665543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.56  E-value=6.6e-05  Score=63.75  Aligned_cols=56  Identities=13%  Similarity=0.188  Sum_probs=38.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.+++..|+.+++.....+.+.   +.    ..                ...+..+++.|+||+||||+++.+++.+
T Consensus        12 l~~~~~~~~~~~~~g~~~~~~~l~---~~----l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           12 LTERAEQGKLDPVIGRDEEIRRTI---QV----LQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHHTTCSCCCCSCHHHHHHHH---HH----HT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhhccccccccchHHHHHHH---HH----Hh----------------cCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            455678888888877654322222   21    10                1234567899999999999999999987

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.56  E-value=6.4e-05  Score=67.09  Aligned_cols=40  Identities=18%  Similarity=0.393  Sum_probs=32.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +++.+|.|.|++||||||+++.|+..++     +.+.+++.|.+-
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~~i~~v~~d~~~   43 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG-----ERVALLPMDHYY   43 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG-----GGEEEEEGGGCB
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecCccc
Confidence            4678999999999999999999999874     135788888754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.55  E-value=3.1e-05  Score=73.81  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -..+.|||..|+.++++..+.+.+..+++.                      ...|. +++.|+||+||||+++.+++.+
T Consensus        26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKS----------------------ANLPH-MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC----------------------TTCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             cHHHhcCCCCHHHhhCCHHHHHHHHHHHhc----------------------CCCCE-EEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999988877655544432                      22344 8999999999999999999986


Q ss_pred             ccc-CCCCCeEEEeCCccc
Q 015774          237 FWS-GAATNAVVVEADAFK  254 (400)
Q Consensus       237 g~~-~~~~~avvIdaDefR  254 (400)
                      +.+ .....++.+++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~  101 (353)
T 1sxj_D           83 YGPDLMKSRILELNASDER  101 (353)
T ss_dssp             HHHHHHTTSEEEECSSSCC
T ss_pred             CCCcccccceEEEcccccc
Confidence            420 001245566665543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.54  E-value=6.9e-05  Score=71.31  Aligned_cols=74  Identities=16%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             hhhhhhhhhhHHHHHHHHHHH-HHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~lie-e~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      -+|++|.+-+.+++.+.+.+. .+..         ..+...+.  -..|.-++|.|+||+||||+++.|+..++.     
T Consensus         7 ~~~~di~g~~~~~~~l~~~i~~~~~~---------~~~l~~~~--l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----   70 (274)
T 2x8a_A            7 VTWADIGALEDIREELTMAILAPVRN---------PDQFKALG--LVTPAGVLLAGPPGCGKTLLAKAVANESGL-----   70 (274)
T ss_dssp             -----CCHHHHHHHHHHHHHTHHHHS---------HHHHHHTT--CCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHhhC---------HHHHHHcC--CCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----
Confidence            468888888888887776554 2110         11111111  122334999999999999999999999853     


Q ss_pred             CeEEEeCCccc
Q 015774          244 NAVVVEADAFK  254 (400)
Q Consensus       244 ~avvIdaDefR  254 (400)
                      +.+.+++.++.
T Consensus        71 ~~i~i~g~~l~   81 (274)
T 2x8a_A           71 NFISVKGPELL   81 (274)
T ss_dssp             EEEEEETTTTC
T ss_pred             CEEEEEcHHHH
Confidence            56778776553

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.54  E-value=3.3e-05  Score=76.37  Aligned_cols=81  Identities=19%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ++..+++..|+.+++...+++.+..++.....  .      ..+...+   ...+.-+||.|+||+|||++|+.++.+++
T Consensus       105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~--~------~~~~~~~---~~~~~~vLL~GppGtGKT~la~aia~~~~  173 (389)
T 3vfd_A          105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSL--R------PELFTGL---RAPARGLLLFGPPGNGKTMLAKAVAAESN  173 (389)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHH--C------TTTSCGG---GCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             hhccCCCCChHHhCCHHHHHHHHHHHHHHhcc--C------HHHhccc---CCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            44556788999999999999888888764211  0      1111111   23466899999999999999999999985


Q ss_pred             ccCCCCCeEEEeCCccc
Q 015774          238 WSGAATNAVVVEADAFK  254 (400)
Q Consensus       238 ~~~~~~~avvIdaDefR  254 (400)
                      .     .++.+++.++.
T Consensus       174 ~-----~~~~v~~~~l~  185 (389)
T 3vfd_A          174 A-----TFFNISAASLT  185 (389)
T ss_dssp             C-----EEEEECSCCC-
T ss_pred             C-----cEEEeeHHHhh
Confidence            4     67778877665

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.54  E-value=4e-05  Score=71.68  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..+.+|.|.|++||||||+++.|++++|+       .+++.|.+.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~-------~~~d~g~i~   62 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNW-------RLLDSGAIY   62 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTC-------EEEEHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCC-------CcCCCCcee
Confidence            34578999999999999999999999976       788877654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.53  E-value=2.7e-05  Score=74.98  Aligned_cols=43  Identities=30%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .+.+|.|+|++||||||+++.|++.++.  .+.++.+|++|+|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--EGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH--HTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhh--cCCCeeEeecchhhc
Confidence            4668999999999999999999998741  122478999999974

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.53  E-value=0.00014  Score=70.49  Aligned_cols=76  Identities=14%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      +-+|+++.+.+.+++.+.+.+.--..  .      ..+..   ....+|.-+||.|+||+|||++|+.++..+.    +.
T Consensus         8 ~~~~~di~G~~~~k~~l~~~v~~p~~--~------~~~~~---~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~   72 (322)
T 1xwi_A            8 NVKWSDVAGLEGAKEALKEAVILPIK--F------PHLFT---GKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NS   72 (322)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHHHHHHH--C------GGGSC---TTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----SC
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHHh--C------HHHHh---CCCCCCceEEEECCCCccHHHHHHHHHHHcC----CC
Confidence            45799999999999888888764111  0      01111   1134567899999999999999999999872    13


Q ss_pred             CeEEEeCCccc
Q 015774          244 NAVVVEADAFK  254 (400)
Q Consensus       244 ~avvIdaDefR  254 (400)
                      +.+.+++.++.
T Consensus        73 ~~~~i~~~~l~   83 (322)
T 1xwi_A           73 TFFSISSSDLV   83 (322)
T ss_dssp             EEEEEECCSSC
T ss_pred             cEEEEEhHHHH
Confidence            56667766553

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.52  E-value=0.00011  Score=72.38  Aligned_cols=47  Identities=21%  Similarity=0.253  Sum_probs=37.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ...|.+|.|.|++||||||+++.|...+.-...++.+.+++.|.|.-
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~  135 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY  135 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence            46799999999999999999999998873111245678899999863

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.49  E-value=6.8e-05  Score=63.96  Aligned_cols=56  Identities=16%  Similarity=0.221  Sum_probs=39.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.+|+..|+.+++.......   +++.    +.                ...+..+++.|+||+||||+++.+++.+
T Consensus        12 l~~~~~~~~~~~~~g~~~~~~~---l~~~----l~----------------~~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           12 LTALARAGKLDPVIGRDTEIRR---AIQI----LS----------------RRTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             HHHHHHTTCSCCCCSCHHHHHH---HHHH----HT----------------SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHhccccchhhcchHHHHH---HHHH----Hh----------------CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4567888899988776553222   2222    11                1234467999999999999999999987

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.48  E-value=8.5e-05  Score=70.99  Aligned_cols=74  Identities=20%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      +..|+++.+...+++.+.++++.-..  .      ......+  .-..|..++|.|+||+||||+|+.++..++.     
T Consensus        11 ~~~~~di~G~~~~~~~l~~~v~~~~~--~------~~~~~~~--~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----   75 (301)
T 3cf0_A           11 QVTWEDIGGLEDVKRELQELVQYPVE--H------PDKFLKF--GMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----   75 (301)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHHHHHHH--C------HHHHHHH--CCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHhh--C------HHHHHHc--CCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----
Confidence            45788898888888888887764110  0      0000000  1246778999999999999999999999843     


Q ss_pred             CeEEEeCCc
Q 015774          244 NAVVVEADA  252 (400)
Q Consensus       244 ~avvIdaDe  252 (400)
                      +.+.+++.+
T Consensus        76 ~~i~v~~~~   84 (301)
T 3cf0_A           76 NFISIKGPE   84 (301)
T ss_dssp             EEEEECHHH
T ss_pred             CEEEEEhHH
Confidence            556666433

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.48  E-value=0.00012  Score=70.52  Aligned_cols=77  Identities=17%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      .+.+.+|+++.+...+++.+..++.--...        ..+.   ......|.-+|+.|+||+|||++|+.+++.++.  
T Consensus        11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~--------~~~~---~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--   77 (322)
T 3eie_A           11 EKPNVKWEDVAGLEGAKEALKEAVILPVKF--------PHLF---KGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--   77 (322)
T ss_dssp             ECCCCCGGGSCSCHHHHHHHHHHTHHHHHC--------GGGC---CTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--
T ss_pred             cCCCCCHHHhcChHHHHHHHHHHHHHHHhC--------HHHH---hcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--
Confidence            345568999999999999988887642110        0010   111345678999999999999999999999853  


Q ss_pred             CCCCeEEEeCCcc
Q 015774          241 AATNAVVVEADAF  253 (400)
Q Consensus       241 ~~~~avvIdaDef  253 (400)
                         ..+.+++.++
T Consensus        78 ---~~~~v~~~~l   87 (322)
T 3eie_A           78 ---TFFSVSSSDL   87 (322)
T ss_dssp             ---EEEEEEHHHH
T ss_pred             ---CEEEEchHHH
Confidence               5666765443

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.48  E-value=0.00011  Score=66.87  Aligned_cols=35  Identities=14%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ..+|.|.|++||||||+++.||+++|+       .++|.|.+
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~-------~~~D~~~~   40 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNI-------PLYSKELL   40 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTC-------CEECHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCc-------CEECHHHH
Confidence            348999999999999999999999977       68885543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.46  E-value=0.00047  Score=65.07  Aligned_cols=33  Identities=24%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .-+-+.|+|||||||+++.|++.+++       .+|++|+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g~-------~~is~gd   41 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFGI-------PQISTGD   41 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC-------CEECHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhCC-------CeeechH
Confidence            34568899999999999999999965       7998754

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.46  E-value=0.00047  Score=64.16  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=29.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -..|-|+|.+||||||+++.|++ +|+       .+||+|.+-
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~-------~vidaD~ia   43 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGA-------SLVDTDLIA   43 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTC-------EEEEHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCC-------cEEECcHHH
Confidence            34788999999999999999988 755       899988654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.44  E-value=4.9e-05  Score=72.08  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ...|+|.|+|||||||+++.|+..+||       .++|.|.+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~-------~~~d~d~~~   83 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGY-------TFFDCDTLI   83 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC-------cEEeCcHHH
Confidence            457999999999999999999999976       799987654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.44  E-value=5.7e-05  Score=70.61  Aligned_cols=71  Identities=20%  Similarity=0.278  Sum_probs=48.0

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc
Q 015774          160 AATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS  239 (400)
Q Consensus       160 ~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~  239 (400)
                      +.|||..|+.+++...+...+..+++.                      ...|. +++.|+||+||||+++.+++.+..+
T Consensus         9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~   65 (319)
T 2chq_A            9 EKYRPRTLDEVVGQDEVIQRLKGYVER----------------------KNIPH-LLFSGPPGTGKTATAIALARDLFGE   65 (319)
T ss_dssp             TTTSCSSGGGSCSCHHHHHHHHTTTTT----------------------TCCCC-EEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCHHHHhCCHHHHHHHHHHHhC----------------------CCCCe-EEEECcCCcCHHHHHHHHHHHhcCC
Confidence            458999999999888766655444322                      23344 8999999999999999999986211


Q ss_pred             CCCCCeEEEeCCcc
Q 015774          240 GAATNAVVVEADAF  253 (400)
Q Consensus       240 ~~~~~avvIdaDef  253 (400)
                      ......+.+++.+.
T Consensus        66 ~~~~~~~~~~~~~~   79 (319)
T 2chq_A           66 NWRDNFIEMNASDE   79 (319)
T ss_dssp             CHHHHCEEEETTST
T ss_pred             cccCCeEEEeCccc
Confidence            00113456665443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.44  E-value=9.6e-05  Score=69.36  Aligned_cols=73  Identities=21%  Similarity=0.276  Sum_probs=47.8

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      +.+|+++...+.++..+..++..+..         ..+...+.  -..|.-++|.|+||+||||+++.|+..++     .
T Consensus        36 ~~~~~~i~g~~~~~~~l~~l~~~~~~---------~~~l~~~~--~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~   99 (278)
T 1iy2_A           36 KVTFKDVAGAEEAKEELKEIVEFLKN---------PSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEAR-----V   99 (278)
T ss_dssp             CCCGGGSSSCHHHHHHHHHHHHHHHC---------HHHHHHTT--CCCCCEEEEECCTTSSHHHHHHHHHHHTT-----C
T ss_pred             CCCHHHhCChHHHHHHHHHHHHHHHC---------HHHHHHcC--CCCCCeEEEECCCcChHHHHHHHHHHHcC-----C
Confidence            45788888888777777777664321         01111111  12233389999999999999999999874     3


Q ss_pred             CeEEEeCCc
Q 015774          244 NAVVVEADA  252 (400)
Q Consensus       244 ~avvIdaDe  252 (400)
                      +.+.+++.+
T Consensus       100 ~~i~~~~~~  108 (278)
T 1iy2_A          100 PFITASGSD  108 (278)
T ss_dssp             CEEEEEHHH
T ss_pred             CEEEecHHH
Confidence            667776543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.42  E-value=0.00082  Score=62.12  Aligned_cols=92  Identities=16%  Similarity=0.144  Sum_probs=50.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCC-CeEEEe-CCccccchHHHHHHhcCC---CCChhhHhHHHHHH-HHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT-NAVVVE-ADAFKETDVIYRALSSKG---HHDDMLQTAELVHQ-SSTD  285 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~-~avvId-aDefRe~D~irk~L~~~G---~~~d~~~aa~~v~~-~~~~  285 (400)
                      +.+|++.|++||||||.++.|++.+.  ..+. .+++.. +..-.-...+++.+....   ...-...+....+- .-..
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~   80 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ   80 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHH
Confidence            57899999999999999999999983  2332 333222 111000122334443211   01101111111111 1133


Q ss_pred             HHHHHHHHHHhCCCcEEEEC
Q 015774          286 AASSLLVTALNEGRDVIMDG  305 (400)
Q Consensus       286 ~ae~lie~AL~eG~dVIIDg  305 (400)
                      .....+..++++|..||.|-
T Consensus        81 ~~~~~i~paL~~g~~VI~DR  100 (213)
T 4tmk_A           81 LVETVIKPALANGTWVIGDR  100 (213)
T ss_dssp             HHHHTHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHCCCEEEEcC
Confidence            44557888999999999993

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.42  E-value=0.00017  Score=74.57  Aligned_cols=74  Identities=19%  Similarity=0.227  Sum_probs=53.2

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      .+|+++.+...++..+.++++.++.         ......+.  .+.|.-++|.|+||+||||+++.++.+.+.     .
T Consensus        13 ~~f~di~G~~~~~~~l~e~v~~l~~---------~~~~~~~g--~~~p~gvLL~GppGtGKT~Laraia~~~~~-----~   76 (476)
T 2ce7_A           13 VTFKDVGGAEEAIEELKEVVEFLKD---------PSKFNRIG--ARMPKGILLVGPPGTGKTLLARAVAGEANV-----P   76 (476)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHC---------THHHHTTT--CCCCSEEEEECCTTSSHHHHHHHHHHHHTC-----C
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHhhC---------hHHHhhcC--CCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----C
Confidence            4799999999999888888775321         00111111  234556899999999999999999999853     6


Q ss_pred             eEEEeCCccc
Q 015774          245 AVVVEADAFK  254 (400)
Q Consensus       245 avvIdaDefR  254 (400)
                      .+.+++.+|.
T Consensus        77 f~~is~~~~~   86 (476)
T 2ce7_A           77 FFHISGSDFV   86 (476)
T ss_dssp             EEEEEGGGTT
T ss_pred             eeeCCHHHHH
Confidence            6778766654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.41  E-value=0.00036  Score=73.43  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .++.+|+|.|+|||||||+++.|+..++- ..+..+.++++|.++
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~-~~G~~i~~lDgD~~~  410 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLME-MGGRCVTLLDGDIVR  410 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHT-TCSSCEEEESSHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcc-cCCceEEEECCcHHH
Confidence            46789999999999999999999999842 111235579988765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.40  E-value=8.4e-05  Score=64.95  Aligned_cols=42  Identities=14%  Similarity=0.217  Sum_probs=31.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..+++.|+||+||||+++.++..+. +..+..++.++.+++
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~~~~~~~~~   78 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRGYFFDTKDL   78 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCCCEEEHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeEEEEEHHHH
Confidence            366889999999999999999998872 122345667765544

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.39  E-value=0.0014  Score=59.92  Aligned_cols=88  Identities=18%  Similarity=0.354  Sum_probs=50.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSL  290 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae~l  290 (400)
                      ..|.+-|+.||||||.++.|++.+.   .+.+++... ++.-.....+++.+......+ + .+....+... .......
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~---~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~-~-~~~~lLf~a~R~~~~~~~   77 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV---KDYDVIMTREPGGVPTGEEIRKIVLEGNDMD-I-RTEAMLFAASRREHLVLK   77 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT---TTSCEEEEESSTTCHHHHHHHHHHHSSCCCC-H-HHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH---CCCCEEEeeCCCCChHHHHHHHHHhcccCCC-H-HHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999982   234444432 222111223444443321111 1 2222222211 2234557


Q ss_pred             HHHHHhCCCcEEEEC
Q 015774          291 LVTALNEGRDVIMDG  305 (400)
Q Consensus       291 ie~AL~eG~dVIIDg  305 (400)
                      +..++++|..||.|-
T Consensus        78 i~p~l~~g~~Vi~DR   92 (205)
T 4hlc_A           78 VIPALKEGKVVLCDR   92 (205)
T ss_dssp             HHHHHHTTCEEEEEC
T ss_pred             HHHHHHcCCEEEecC
Confidence            788999999999994

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.39  E-value=0.00079  Score=62.54  Aligned_cols=88  Identities=19%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CC-ccccchHHHHHHhcCC-CCChhhHhHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-AD-AFKETDVIYRALSSKG-HHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aD-efRe~D~irk~L~~~G-~~~d~~~aa~~v~~~~~~~a  287 (400)
                      .+.+|++.|++||||||+++.|++.++.     .+.++. ++ .-.--..+++.+.... ..+  ..+....+...-...
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-----~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~--~~~~~llf~a~R~~~   76 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP-----NCKLLKFPERSTRIGGLINEYLTDDSFQLS--DQAIHLLFSANRWEI   76 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS-----SEEEEESSCTTSHHHHHHHHHHHCTTSCCC--HHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc-----cceEEEecCCCChHHHHHHHHHHhcccCCC--HHHHHHHHHHHHHHH
Confidence            5779999999999999999999999942     233322 21 0000011334443321 111  122222222221112


Q ss_pred             HHHHHHHHhCCCcEEEEC
Q 015774          288 SSLLVTALNEGRDVIMDG  305 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDg  305 (400)
                      ...+..++++|..||.|-
T Consensus        77 ~~~I~paL~~g~~VI~DR   94 (216)
T 3tmk_A           77 VDKIKKDLLEGKNIVMDR   94 (216)
T ss_dssp             HHHHHHHHHTTCEEEEES
T ss_pred             HHHHHHHHHcCCEEEEec
Confidence            246778999999999994

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.38  E-value=0.0008  Score=61.05  Aligned_cols=87  Identities=16%  Similarity=0.218  Sum_probs=50.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV  292 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie  292 (400)
                      +|.+-|+-||||||.++.|++.+  ...+.++++.. ++.-.....+++.+... ... + .+....+..........+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L--~~~g~~v~~treP~~t~~~~~ir~~l~~~-~~~-~-~~~~ll~~a~r~~~~~~I~   76 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYL--EKRGKKVILKREPGGTETGEKIRKILLEE-EVT-P-KAELFLFLASRNLLVTEIK   76 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCSSHHHHHHHHHHHHS-CCC-H-HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCCcHHHHHHHHhhcc-cCC-h-HHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999988  44455655542 21111122333434332 111 1 1112222222222334578


Q ss_pred             HHHhCCCcEEEEC
Q 015774          293 TALNEGRDVIMDG  305 (400)
Q Consensus       293 ~AL~eG~dVIIDg  305 (400)
                      .++++|..||.|-
T Consensus        77 ~~L~~g~~Vi~DR   89 (197)
T 3hjn_A           77 QYLSEGYAVLLDR   89 (197)
T ss_dssp             HHHTTTCEEEEES
T ss_pred             HHHHCCCeEEecc
Confidence            8999999999994

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.36  E-value=3.3e-05  Score=71.52  Aligned_cols=74  Identities=19%  Similarity=0.283  Sum_probs=47.4

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774          164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT  243 (400)
Q Consensus       164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~  243 (400)
                      +.+|+++++...++..+..+++.+..         ......+.  .+.|.-+++.|+||+||||+|+.++..++.     
T Consensus         7 ~~~~~~i~G~~~~~~~l~~~~~~~~~---------~~~~~~~~--~~~~~~vll~G~~GtGKT~la~~la~~~~~-----   70 (268)
T 2r62_A            7 NVRFKDMAGNEEAKEEVVEIVDFLKY---------PERYANLG--AKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-----   70 (268)
T ss_dssp             CCCSTTSSSCTTTHHHHHHHHHHHHC---------HHHHHHHS--CCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-----
T ss_pred             CCCHHHhCCcHHHHHHHHHHHHHHHC---------hHHHHHCC--CCCCceEEEECCCCCcHHHHHHHHHHHhCC-----
Confidence            35677788877777777776664211         00000011  233444889999999999999999999853     


Q ss_pred             CeEEEeCCcc
Q 015774          244 NAVVVEADAF  253 (400)
Q Consensus       244 ~avvIdaDef  253 (400)
                      ..+.++..++
T Consensus        71 ~~~~v~~~~~   80 (268)
T 2r62_A           71 PFFSMGGSSF   80 (268)
T ss_dssp             CCCCCCSCTT
T ss_pred             CEEEechHHH
Confidence            4555655544

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.35  E-value=0.00064  Score=63.74  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774          168 EKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV  247 (400)
Q Consensus       168 ~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv  247 (400)
                      +.+.+...+...+...+.....-.              ..+.+++..+++.|+||+||||+|+.+++.+..  .+...+.
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~--------------~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~   80 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGL--------------KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIR   80 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTC--------------SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEE
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCC--------------CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEE
Confidence            456677777777777776632211              111334568999999999999999999998732  2345788


Q ss_pred             EeCCccccc
Q 015774          248 VEADAFKET  256 (400)
Q Consensus       248 IdaDefRe~  256 (400)
                      ++...+...
T Consensus        81 ~~~~~~~~~   89 (311)
T 4fcw_A           81 IDMTEYMEK   89 (311)
T ss_dssp             EEGGGCCST
T ss_pred             eeccccccc
Confidence            888777643

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.33  E-value=9.9e-05  Score=70.59  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=33.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+.|..+|+.|+||+|||++|+.+++.++.     ..+.++..++
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~-----~~i~v~~~~l   72 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGI-----NPIMMSAGEL   72 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTC-----CCEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeHHHh
Confidence            467889999999999999999999999964     7788875444

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.32  E-value=0.00012  Score=64.47  Aligned_cols=27  Identities=33%  Similarity=0.612  Sum_probs=24.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .++.+|.|.|+|||||||+++.|+..+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            357799999999999999999999876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.31  E-value=0.00018  Score=64.82  Aligned_cols=43  Identities=28%  Similarity=0.325  Sum_probs=33.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+.++.|.|+|||||||+++.|+..+.-  .+.....|.-|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~--~g~~~g~v~~d~~~   62 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSA--QGLPAEVVPMDGFH   62 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHH--TTCCEEEEESGGGB
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCceEEEecCCCc
Confidence            56889999999999999999999998731  12245666666654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.30  E-value=0.00011  Score=74.66  Aligned_cols=78  Identities=15%  Similarity=0.118  Sum_probs=51.2

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC
Q 015774          162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA  241 (400)
Q Consensus       162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~  241 (400)
                      +.+.+|+++.+...+++.+...+..-  +..      ..+..   .....|.-+||.|+||+|||++|+.++..+.    
T Consensus       128 ~~~~~~~di~G~~~~k~~l~~~v~~p--~~~------~~~~~---~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----  192 (444)
T 2zan_A          128 RPNVKWSDVAGLEGAKEALKEAVILP--IKF------PHLFT---GKRTPWRGILLFGPPGTGKSYLAKAVATEAN----  192 (444)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHTHH--HHC------TTTTS---GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHH--hhC------HHHhh---ccCCCCceEEEECCCCCCHHHHHHHHHHHcC----
Confidence            45678999999888888887776531  110      01110   1124567899999999999999999999972    


Q ss_pred             CCCeEEEeCCccc
Q 015774          242 ATNAVVVEADAFK  254 (400)
Q Consensus       242 ~~~avvIdaDefR  254 (400)
                      +.+.+.+++.++.
T Consensus       193 ~~~~~~v~~~~l~  205 (444)
T 2zan_A          193 NSTFFSISSSDLV  205 (444)
T ss_dssp             SSEEEEECCC---
T ss_pred             CCCEEEEeHHHHH
Confidence            1355667765543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.30  E-value=0.00024  Score=68.43  Aligned_cols=47  Identities=19%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ...+.+|.|.|++||||||+++.|+..++-....+.+.+|+.|.+..
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~  123 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC
Confidence            35788999999999999999999999763001234578889888763

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.29  E-value=0.0005  Score=66.35  Aligned_cols=55  Identities=20%  Similarity=0.248  Sum_probs=38.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCccccchHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRAL  263 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDefRe~D~irk~L  263 (400)
                      ...|.+|.|+|++||||||+++.|+..++-.+...+++.+ +.|.|--....+..+
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l   83 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL   83 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence            4578999999999999999999999988421000234555 999987444444433

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.29  E-value=0.00036  Score=72.53  Aligned_cols=76  Identities=21%  Similarity=0.284  Sum_probs=54.5

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774          163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA  242 (400)
Q Consensus       163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~  242 (400)
                      .+.+|+++.+...++..+.+++..++.         ......+.  .+.|.-++|.|+||+||||+++.++...+     
T Consensus        26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~---------~~~~~~lg--~~ip~GvLL~GppGtGKTtLaraIa~~~~-----   89 (499)
T 2dhr_A           26 PKVTFKDVAGAEEAKEELKEIVEFLKN---------PSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEAR-----   89 (499)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHHHHC---------GGGTTTTS--CCCCSEEEEECSSSSSHHHHHHHHHHHTT-----
T ss_pred             CCCCHHHcCCcHHHHHHHHHHHHHhhc---------hhhhhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHhC-----
Confidence            356899999999999888888776321         11111111  23344599999999999999999999874     


Q ss_pred             CCeEEEeCCccc
Q 015774          243 TNAVVVEADAFK  254 (400)
Q Consensus       243 ~~avvIdaDefR  254 (400)
                      .+.+.+++.+|.
T Consensus        90 ~~~i~i~g~~~~  101 (499)
T 2dhr_A           90 VPFITASGSDFV  101 (499)
T ss_dssp             CCEEEEEGGGGT
T ss_pred             CCEEEEehhHHH
Confidence            367888876664

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.28  E-value=0.00021  Score=68.83  Aligned_cols=71  Identities=14%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             HHhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          160 AATRKQR-FEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       160 ~~~r~~r-f~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +.+|+.. |+.+++.+..++.+..+...+..                  ....+..+|+.|+||+||||+|+.+++.++.
T Consensus        35 ~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~------------------~~~~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           35 DALEPRQASQGMVGQLAARRAAGVVLEMIRE------------------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TTSCBCSEETTEESCHHHHHHHHHHHHHHHT------------------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             cccCcCcchhhccChHHHHHHHHHHHHHHHc------------------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3467766 99999999988888777665221                  1223578999999999999999999999853


Q ss_pred             cCCCCCeEEEeCC
Q 015774          239 SGAATNAVVVEAD  251 (400)
Q Consensus       239 ~~~~~~avvIdaD  251 (400)
                         ....+.++..
T Consensus        97 ---~~~~~~~~~~  106 (368)
T 3uk6_A           97 ---DTPFTAIAGS  106 (368)
T ss_dssp             ---SCCEEEEEGG
T ss_pred             ---cCCcccccch
Confidence               1234455543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.27  E-value=0.00015  Score=65.51  Aligned_cols=27  Identities=30%  Similarity=0.597  Sum_probs=24.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +++.+|+|.|||||||||+++.|+..+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            467899999999999999999999987

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.27  E-value=0.00035  Score=71.34  Aligned_cols=67  Identities=15%  Similarity=0.192  Sum_probs=50.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHH---HHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774          158 IMAATRKQRFEKVTKDLKMK---RVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vk---r~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~  234 (400)
                      ..+.+||+.|+.+++...+.   ..+...++.                      . .+..+++.|+||+||||+|+.|++
T Consensus        16 la~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~----------------------~-~~~~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEA----------------------G-HLHSMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             HHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH----------------------T-CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc----------------------C-CCcEEEEECCCCCcHHHHHHHHHH
Confidence            45779999999999988777   444444443                      1 224689999999999999999999


Q ss_pred             hccccCCCCCeEEEeCCc
Q 015774          235 ESFWSGAATNAVVVEADA  252 (400)
Q Consensus       235 ~lg~~~~~~~avvIdaDe  252 (400)
                      .++.     ..+.+++..
T Consensus        73 ~~~~-----~f~~l~a~~   85 (447)
T 3pvs_A           73 YANA-----DVERISAVT   85 (447)
T ss_dssp             HTTC-----EEEEEETTT
T ss_pred             HhCC-----CeEEEEecc
Confidence            9843     556666544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.24  E-value=0.00045  Score=61.39  Aligned_cols=42  Identities=5%  Similarity=0.087  Sum_probs=33.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+..+++.|+||+||||+++.+++.+..  .+..+..++.+++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~~~~   92 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGIHA   92 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHHHH
Confidence            4567899999999999999999998742  34567888877765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.23  E-value=0.0002  Score=66.17  Aligned_cols=51  Identities=27%  Similarity=0.357  Sum_probs=33.8

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc---CCCCCeEEEeCCccc
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAFK  254 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~---~~~~~avvIdaDefR  254 (400)
                      .+...-+.+.+|-|.|++||||||+++.|+..+|..   .....+.+++.|.|-
T Consensus        17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~   70 (245)
T 2jeo_A           17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY   70 (245)
T ss_dssp             ------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred             ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence            333334678899999999999999999999987531   001234577777654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.23  E-value=0.00055  Score=64.25  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC--CCCeE
Q 015774          169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAV  246 (400)
Q Consensus       169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~--~~~av  246 (400)
                      .+++...+++.+..++..+.. ..  ......    + ...+.+.-+++.|+||+||||+|+.+++.++....  ...++
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~-~~--~~~~~g----~-~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~  103 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLV-ER--ARQKLG----L-AHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLV  103 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHH-HH--HHHHHT----C-CSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEE
T ss_pred             HccChHHHHHHHHHHHHHHHh-HH--HHHHcC----C-CCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEE
Confidence            678888888888888775321 00  000000    0 11244557899999999999999999988743111  12456


Q ss_pred             EEeCCccc
Q 015774          247 VVEADAFK  254 (400)
Q Consensus       247 vIdaDefR  254 (400)
                      .++++++.
T Consensus       104 ~~~~~~l~  111 (309)
T 3syl_A          104 SVTRDDLV  111 (309)
T ss_dssp             EECGGGTC
T ss_pred             EEcHHHhh
Confidence            77766653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.21  E-value=0.00037  Score=61.66  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      |..+++.|+||+||||+++.++..+.  ..+..+++++..++
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~~~   93 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVPEL   93 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhHHH
Confidence            46789999999999999999999873  33456677765443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.20  E-value=0.00021  Score=63.01  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=24.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .++.++.|.|+|||||||+++.|+..+
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            456799999999999999999999876

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.19  E-value=0.00048  Score=69.79  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCe
Q 015774          166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA  245 (400)
Q Consensus       166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~a  245 (400)
                      .|+.+++.+.++..+..+++-++.                  ....|.-+|+.|+||+||||+|+.+++.++.   ....
T Consensus        35 ~~~~iiG~~~~~~~l~~~~~~~~~------------------~~~~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~   93 (456)
T 2c9o_A           35 AASGLVGQENAREACGVIVELIKS------------------KKMAGRAVLLAGPPGTGKTALALAIAQELGS---KVPF   93 (456)
T ss_dssp             EETTEESCHHHHHHHHHHHHHHHT------------------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCE
T ss_pred             chhhccCHHHHHHHHHHHHHHHHh------------------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCC---CceE
Confidence            578899999998888888765321                  1234567899999999999999999999862   1355


Q ss_pred             EEEeCCccc
Q 015774          246 VVVEADAFK  254 (400)
Q Consensus       246 vvIdaDefR  254 (400)
                      +.+++-++.
T Consensus        94 ~~~~~~~~~  102 (456)
T 2c9o_A           94 CPMVGSEVY  102 (456)
T ss_dssp             EEEEGGGGC
T ss_pred             EEEeHHHHH
Confidence            666655443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.18  E-value=0.00027  Score=73.87  Aligned_cols=43  Identities=7%  Similarity=0.202  Sum_probs=34.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +++.+|++.|+|||||||+++.|++++++-..+..+.++|+|.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            4678999999999999999999999996311123457899886

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.17  E-value=0.00052  Score=75.34  Aligned_cols=71  Identities=15%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      -+|++|.+-+..+..+.+.++-   -+.  .   ..+...+-  .+.|.-|||.||||+|||++|+.+|.+++.     .
T Consensus       201 v~~~dIgGl~~~~~~l~e~v~~---pl~--~---p~~f~~~g--~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~  265 (806)
T 3cf2_A          201 VGYDDIGGCRKQLAQIKEMVEL---PLR--H---PALFKAIG--VKPPRGILLYGPPGTGKTLIARAVANETGA-----F  265 (806)
T ss_dssp             CCGGGCCSCCTTHHHHHHHHHH---HHH--C---CGGGTSCC--CCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----E
T ss_pred             CChhhhcCHHHHHHHHHHHHHH---Hcc--C---HHHHhhcC--CCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----e
Confidence            5788888877877777777653   111  0   11111111  367889999999999999999999999864     5


Q ss_pred             eEEEeC
Q 015774          245 AVVVEA  250 (400)
Q Consensus       245 avvIda  250 (400)
                      .+.|++
T Consensus       266 ~~~v~~  271 (806)
T 3cf2_A          266 FFLING  271 (806)
T ss_dssp             EEEEEH
T ss_pred             EEEEEh
Confidence            566653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.11  E-value=0.0007  Score=63.03  Aligned_cols=72  Identities=25%  Similarity=0.332  Sum_probs=46.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774          169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (400)
Q Consensus       169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI  248 (400)
                      .+++...+++.+...+...  ...      ..+..++.. ...|.-+++.|+||+||||+++.+++.++.     ..+.+
T Consensus        16 ~i~G~~~~~~~l~~~l~~~--~~~------~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~l~~-----~~~~i   81 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNR--WRR------MQLQEPLRH-EVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKV   81 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHH--HHT------TSSCHHHHH-HCCCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEE
T ss_pred             hcCChHHHHHHHHHHHHHH--Hhh------hhhcccccc-cCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEE
Confidence            4666667766666655531  110      111111111 234567889999999999999999999853     67788


Q ss_pred             eCCccc
Q 015774          249 EADAFK  254 (400)
Q Consensus       249 daDefR  254 (400)
                      +..++.
T Consensus        82 ~~~~~~   87 (310)
T 1ofh_A           82 EATKFT   87 (310)
T ss_dssp             EGGGGS
T ss_pred             cchhcc
Confidence            877664

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.09  E-value=0.00029  Score=62.04  Aligned_cols=26  Identities=15%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.++.|.|+|||||||+++.|+..+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34689999999999999999999876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.08  E-value=0.0014  Score=62.74  Aligned_cols=39  Identities=15%  Similarity=0.222  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDefR  254 (400)
                      .+++.|+||+||||+++.++..+.  .. +..++.+++....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~   85 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYR   85 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCC
Confidence            889999999999999999999872  12 2356777755544

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.01  E-value=0.00087  Score=64.47  Aligned_cols=27  Identities=33%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..|..+++.|+||+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456689999999999999999999876

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0021  Score=63.21  Aligned_cols=52  Identities=19%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-----CCCeEEEeCCccccchHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-----ATNAVVVEADAFKETDVIY  260 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-----~~~avvIdaDefRe~D~ir  260 (400)
                      ...|..+++.|+||+|||++++.+++++.-...     .-.++.|++-.+......|
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~   98 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY   98 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence            356778899999999999999999999831100     1135677766655433333

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.98  E-value=0.0016  Score=63.39  Aligned_cols=71  Identities=17%  Similarity=0.118  Sum_probs=43.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          170 VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       170 v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      +++...+++.+...+.....-..      ......  .....|.-+++.|+||+||||+|+.|++.++.     ..+.++
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~------~~~~~~--~~~~~~~~vll~GppGtGKT~la~~ia~~~~~-----~~~~~~   83 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLR------NGDTSN--GVELGKSNILLIGPTGSGKTLLAETLARLLDV-----PFTMAD   83 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHH------TTSCSS--SCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEE
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhc------cccccc--cccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEec
Confidence            56677777777666653222111      000000  00234556899999999999999999999853     566676


Q ss_pred             CCcc
Q 015774          250 ADAF  253 (400)
Q Consensus       250 aDef  253 (400)
                      .-++
T Consensus        84 ~~~l   87 (363)
T 3hws_A           84 ATTL   87 (363)
T ss_dssp             HHHH
T ss_pred             hHHh
Confidence            5443

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.96  E-value=0.0011  Score=61.36  Aligned_cols=40  Identities=18%  Similarity=0.157  Sum_probs=31.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .-+++.|+||+|||++|+.+++.++  ..+...+.++...+.
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~~   69 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN   69 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGSC
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCCC
Confidence            3578899999999999999999873  233467888877764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.96  E-value=0.0023  Score=62.65  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+..+++.|.||+||||+...|+...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356688999999999999999998754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.96  E-value=0.00044  Score=61.32  Aligned_cols=42  Identities=12%  Similarity=0.223  Sum_probs=32.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...++++.|+|||||||++..++...  ...+.++.+++.+.-
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~~   62 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEES   62 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSSC
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEcccC
Confidence            356799999999999999999999664  123457788887763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.91  E-value=0.00062  Score=61.27  Aligned_cols=42  Identities=17%  Similarity=0.324  Sum_probs=33.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...++++.|+|||||||++..++...  ...+.++++++.+.-
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEEH   62 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence            456799999999999999999887764  223567888988764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.89  E-value=0.0015  Score=64.02  Aligned_cols=42  Identities=19%  Similarity=0.199  Sum_probs=34.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ...+.+|.++|.||+||||++..|+..+  ...+..+.+++.|-
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l--~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHL--IERGHRVAVLAVDP  117 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEEEC-
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHH--HhCCCceEEEecCC
Confidence            3456788999999999999999999887  34567888999884

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.89  E-value=0.00068  Score=58.78  Aligned_cols=43  Identities=26%  Similarity=0.384  Sum_probs=33.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ....+++.|+||+||||+++.++..+.  ..+...+.++..++..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~~~   77 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASMPL   77 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHhhH
Confidence            345788999999999999999999872  2334578888777653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.87  E-value=0.0014  Score=60.06  Aligned_cols=41  Identities=17%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ...+.++++.|.+|+||||++..|+..+  . .+..+.+|+.|-
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l--~-~g~~v~vvd~D~   51 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYL--E-DNYKVAYVNLDT   51 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHH--T-TTSCEEEEECCS
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHH--H-CCCeEEEEeCCC
Confidence            4567899999999999999999999887  3 566888999884

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.87  E-value=0.00033  Score=65.26  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+|.+|++.|++||||||+++.|++.+
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4678999999999999999999999998

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.86  E-value=0.0018  Score=55.07  Aligned_cols=38  Identities=16%  Similarity=0.079  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -+++.|+||+|||++|+.++....  ..+...+ ++...+.
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~~~~   63 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YRELTPD   63 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEECCTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECCCCC
Confidence            368999999999999999998762  2334556 7765543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.85  E-value=0.00027  Score=62.66  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +|.|.|++||||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999999884

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.84  E-value=0.0015  Score=62.30  Aligned_cols=64  Identities=11%  Similarity=-0.005  Sum_probs=46.1

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..++.+|+.-++.+++...+++.+...+..                       ..  -+++.|+||+|||++++.+++.+
T Consensus        16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~-----------------------~~--~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           16 NKIKEVIDEVGKVVVGQKYMINRLLIGICT-----------------------GG--HILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             HHHHHHHHHHTTTCCSCHHHHHHHHHHHHH-----------------------TC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccceeCcHHHHHHHHHHHHc-----------------------CC--eEEEECCCCCcHHHHHHHHHHHh
Confidence            457788998889898887766544332221                       12  47889999999999999999988


Q ss_pred             cccCCCCCeEEEeC
Q 015774          237 FWSGAATNAVVVEA  250 (400)
Q Consensus       237 g~~~~~~~avvIda  250 (400)
                      +.     ....++.
T Consensus        71 ~~-----~~~~i~~   79 (331)
T 2r44_A           71 DL-----DFHRIQF   79 (331)
T ss_dssp             TC-----CEEEEEC
T ss_pred             CC-----CeEEEec
Confidence            53     4555553

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.80  E-value=0.0019  Score=66.45  Aligned_cols=71  Identities=23%  Similarity=0.339  Sum_probs=46.4

Q ss_pred             hhhhhhHHHHHHHHHHHH-HHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774          169 KVTKDLKMKRVFSTLVEE-MKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV  247 (400)
Q Consensus       169 ~v~~~~~vkr~~~~liee-~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv  247 (400)
                      .|++.+.+++.+...+.. |+...         +...+. ....|.-|+|.|+||+||||+++.||..+++     ..+.
T Consensus        16 ~IvGqe~ak~~l~~av~~~~~r~~---------~~~~~~-~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-----~~~~   80 (444)
T 1g41_A           16 HIIGQADAKRAVAIALRNRWRRMQ---------LQEPLR-HEVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIK   80 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHH---------SCTTTT-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEE
T ss_pred             HhCCHHHHHHHHHHHHHHHHhhhc---------cccccc-cccCCceEEEEcCCCCCHHHHHHHHHHHcCC-----Ccee
Confidence            467777777777666643 22221         111111 0124556899999999999999999999964     6677


Q ss_pred             EeCCccc
Q 015774          248 VEADAFK  254 (400)
Q Consensus       248 IdaDefR  254 (400)
                      +++..+.
T Consensus        81 v~~~~~~   87 (444)
T 1g41_A           81 VEATKFT   87 (444)
T ss_dssp             EEGGGGC
T ss_pred             ecchhhc
Confidence            7765554

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.80  E-value=0.00077  Score=61.85  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=24.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .|.+|++.|++||||||+++.|++.+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            37899999999999999999999998

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.78  E-value=0.0012  Score=58.36  Aligned_cols=38  Identities=21%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +...++++.|+|||||||++..++...     +.++++++.+.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~-----~~~v~~i~~~~   55 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGLLS-----GKKVAYVDTEG   55 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHHHH-----CSEEEEEESSC
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEEECCC
Confidence            456799999999999999999999832     45788898876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.77  E-value=0.0016  Score=67.33  Aligned_cols=78  Identities=13%  Similarity=0.154  Sum_probs=53.7

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      ..++.+|+.+.+....++.+.++++....-        ..+...+  ....|.-+||.|+||+|||++|+.++.+++.  
T Consensus       197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~--------~~~~~~~--g~~~~~~vLL~GppGtGKT~lAraia~~~~~--  264 (489)
T 3hu3_A          197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRH--------PALFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETGA--  264 (489)
T ss_dssp             HHTCCCGGGCCSCHHHHHHHHHHTHHHHHC--------HHHHHHH--TCCCCCEEEEECSTTSSHHHHHHHHHHHCSS--
T ss_pred             ccCCCCHHHcCCHHHHHHHHHHHHHHHhhC--------HHHHHhc--CCCCCCcEEEECcCCCCHHHHHHHHHHHhCC--
Confidence            456678999999988888888887742110        0000111  0245667999999999999999999999843  


Q ss_pred             CCCCeEEEeCCcc
Q 015774          241 AATNAVVVEADAF  253 (400)
Q Consensus       241 ~~~~avvIdaDef  253 (400)
                         ..+.+++.++
T Consensus       265 ---~fv~vn~~~l  274 (489)
T 3hu3_A          265 ---FFFLINGPEI  274 (489)
T ss_dssp             ---EEEEEEHHHH
T ss_pred             ---CEEEEEchHh
Confidence               5667765443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.76  E-value=0.0014  Score=63.73  Aligned_cols=45  Identities=20%  Similarity=0.244  Sum_probs=34.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefR  254 (400)
                      .+.+.+|.|.|+|||||||+++.|+..+.- ..| ..+.+|.-|.+-
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~~~v~~v~qd~~~  132 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHHPRVDLVTTDGFL  132 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc-cCCCCeEEEEecCccC
Confidence            467899999999999999999999987631 111 346677767654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.75  E-value=0.0013  Score=61.18  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      ..|.-+++.|+||+||||+|+.+++.++.     ..+.++
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-----~~~~i~   96 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-----PFIKIC   96 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTC-----SEEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEe
Confidence            46678999999999999999999999854     555554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.74  E-value=0.0006  Score=61.26  Aligned_cols=26  Identities=42%  Similarity=0.723  Sum_probs=21.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++.++.|.|+|||||||+++.|...+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            35678999999999999999999865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.74  E-value=0.00099  Score=63.57  Aligned_cols=42  Identities=21%  Similarity=0.297  Sum_probs=32.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+..+++.|+||+||||+++.+++.+.  ..+..++.++++++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSADDFA   77 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHHHHH
Confidence            345678999999999999999999872  123467888876653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.71  E-value=0.00048  Score=62.71  Aligned_cols=28  Identities=29%  Similarity=0.548  Sum_probs=18.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHH-Hhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIM-KES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA-~~l  236 (400)
                      -+++.++.|.|+|||||||+++.|+ ..+
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3467799999999999999999999 654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.66  E-value=0.0018  Score=57.59  Aligned_cols=43  Identities=12%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~----~~~~~avvIdaDe  252 (400)
                      +...++.|.|+|||||||+++.|+...-.+    ....+.+.++.+.
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            467899999999999999999998743110    0123467788765

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.65  E-value=0.0017  Score=61.87  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=32.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~----~~~~~avvIdaDefRe  255 (400)
                      ..|..+++.|+||+||||+++.+++.+...    +.+..++.+++.....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   91 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET   91 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence            456688999999999999999999887100    0012556777665543

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.63  E-value=0.0015  Score=58.78  Aligned_cols=37  Identities=14%  Similarity=0.098  Sum_probs=28.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      ..++.++|++||||||++..|+..+  ...+..+.+|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l--~~~g~~v~~ik~   40 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA--VREGWRVGTVKH   40 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh--HhcCCeeeEEEe
Confidence            3478899999999999999999887  233445556653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.63  E-value=0.0017  Score=58.31  Aligned_cols=43  Identities=12%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe  252 (400)
                      +...++.+.|+|||||||++..++...-.+.    .+.++++++.+.
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            4667999999999999999999998521111    235778898776

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.58  E-value=0.0012  Score=60.97  Aligned_cols=28  Identities=25%  Similarity=0.471  Sum_probs=24.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+...++.|.|||||||||+.+.|+..+
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            4667899999999999999999999876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.58  E-value=0.0018  Score=60.45  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=30.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -.+..|++.|++||||||+|.+|+++.+        .+|+.|...
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~--------~iIsdDs~~   68 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH--------RLIADDRVD   68 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC--------EEEESSEEE
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC--------eEEecchhh
Confidence            3567899999999999999999999862        577766544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.58  E-value=0.0013  Score=59.10  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++..++.|.|+|||||||+++.|+..+
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            567799999999999999999999876

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.54  E-value=0.013  Score=61.05  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++..+++.|+||+||||+++.|+..++     .....++.+.+.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~  145 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVR  145 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccc
Confidence            466899999999999999999999984     355666655543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.50  E-value=0.002  Score=62.86  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=31.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.-+++.|+||+||||+|+.+++.++.     ..+.++...+.
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~-----~~~~~~~~~~~  109 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDI-----PIAISDATSLT  109 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGCC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCC-----CEEEecchhhh
Confidence            4456899999999999999999999853     56777765543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.49  E-value=0.0013  Score=60.07  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=23.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.++.|.|++||||||+++.|+..+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            467789999999999999999999876

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.45  E-value=0.0015  Score=58.26  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .+.|.|+|||||||+++.|+..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.44  E-value=0.0021  Score=60.97  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ++..++++.|++||||||+.+.|+..+.-  ...+.+.++.|.+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~--~~~G~I~~~g~~i   64 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPI   64 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHH--HCCCEEEEEESSC
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCC--CCCCEEEEcCCcc
Confidence            45679999999999999999999987621  1124466665554

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.41  E-value=0.0041  Score=60.02  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.-+++.|+||+|||+++..++..+.- ..+..+++++..++
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~~l  192 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFPSF  192 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHHHH
Confidence            457889999999999999999998730 23456677775443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.40  E-value=0.0026  Score=59.94  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=32.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ....+++|.|+|||||||++..|+...- +..+..+.+++.+.
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEE   74 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEEEeCcC
Confidence            5677999999999999999999998762 12233667777654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.38  E-value=0.0015  Score=63.87  Aligned_cols=43  Identities=26%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..+.+|.+.|+||+||||++..|+..+  ...+..+.+++.|-..
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~--~~~~~~v~v~~~d~~~   96 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL--IREGLKVAVIAVDPSS   96 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCC-
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEeecCCc
Confidence            466788889999999999999998876  2335577888877654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.37  E-value=0.0033  Score=66.02  Aligned_cols=65  Identities=15%  Similarity=0.155  Sum_probs=45.9

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      .+|++.|+.+.+...+.+.+...++.                         ...+++.|+||+||||+++.|+..+..  
T Consensus        34 ~~rp~~l~~i~G~~~~l~~l~~~i~~-------------------------g~~vll~Gp~GtGKTtlar~ia~~l~~--   86 (604)
T 3k1j_A           34 EVPEKLIDQVIGQEHAVEVIKTAANQ-------------------------KRHVLLIGEPGTGKSMLGQAMAELLPT--   86 (604)
T ss_dssp             CCCSSHHHHCCSCHHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHHHHHHHHTSCC--
T ss_pred             cccccccceEECchhhHhhccccccC-------------------------CCEEEEEeCCCCCHHHHHHHHhccCCc--
Confidence            57889999999988776554443332                         236799999999999999999998843  


Q ss_pred             CCCCeEEEeCCc
Q 015774          241 AATNAVVVEADA  252 (400)
Q Consensus       241 ~~~~avvIdaDe  252 (400)
                      ...+.+.+..+.
T Consensus        87 ~~~~~~~~~~~~   98 (604)
T 3k1j_A           87 ETLEDILVFPNP   98 (604)
T ss_dssp             SSCEEEEEECCT
T ss_pred             ccCCeEEEeCCc
Confidence            122334554443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.35  E-value=0.0025  Score=56.06  Aligned_cols=27  Identities=22%  Similarity=0.636  Sum_probs=24.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++..++.+.|++||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            567799999999999999999999987

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.35  E-value=0.0026  Score=64.87  Aligned_cols=57  Identities=14%  Similarity=0.211  Sum_probs=40.1

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+.+|+.+|+.+++.....+.+...+..                       ..+.-+++.|+||+||||+++.|+..+
T Consensus       169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r-----------------------~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-----------------------RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-----------------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCccCcHHHHHHHHHHHhc-----------------------cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            356678899999998876554433322211                       112234789999999999999999986

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.34  E-value=0.0022  Score=58.32  Aligned_cols=33  Identities=18%  Similarity=0.378  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +|++.|++||||||+|..|+.. +.     .+++|++..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~-----~~~yiaT~~   33 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-AP-----QVLYIATSQ   33 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CS-----SEEEEECCC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CC-----CeEEEecCC
Confidence            4799999999999999999976 43     677888744

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.32  E-value=0.0025  Score=60.59  Aligned_cols=44  Identities=18%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDef  253 (400)
                      ..+..+++.|+||+||||+++.+++.+.-... +..++.+++...
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~   87 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI   87 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence            45678899999999999999999997711000 125567775433

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.32  E-value=0.0024  Score=57.24  Aligned_cols=25  Identities=28%  Similarity=0.301  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+++++|+|||||||++..++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999998888775

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.29  E-value=0.0029  Score=63.12  Aligned_cols=43  Identities=16%  Similarity=0.173  Sum_probs=34.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...+++|.|+|||||||++..++...  ...+..+++|+++.-.
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~  101 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHAL  101 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEeccccc
Confidence            457899999999999999999999876  2345578899987643

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.10  E-value=0.0044  Score=57.84  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI  248 (400)
                      .+..+++++|+||+||||.+..++.++  .+.+..+.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~   46 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVF   46 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEE
Confidence            456799999999999999999999887  3445577776

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=96.04  E-value=0.0064  Score=58.84  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=35.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +.+++++|-.|+||||++..||..+  ...+..+.+||+|-
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~l--A~~G~rVLlvD~D~   52 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWM--ARSGKKTLVISTDP   52 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEECCS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH--HHCCCcEEEEeCCC
Confidence            6899999999999999999999887  55678999999996

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.04  E-value=0.004  Score=61.55  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=34.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...++++.|+|||||||++..++...  ...+..+++++++.-
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~  100 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHA  100 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCC
Confidence            356799999999999999999998765  223567899998863

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.03  E-value=0.0053  Score=62.14  Aligned_cols=43  Identities=21%  Similarity=0.326  Sum_probs=31.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +..+++.|+||+||||+++.++..+.-...+..++.+++.+|.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            5568999999999999999999987211113466788877663

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.01  E-value=0.0049  Score=67.30  Aligned_cols=57  Identities=14%  Similarity=0.160  Sum_probs=39.0

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+.+|+.+|+.+++.+...+.+..       ++.                .+.+.-+++.|+||+||||+++.++..+
T Consensus       159 ~l~~~~r~~~ld~viGr~~~i~~l~~-------~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          159 DLTRLAAEGKLDPVIGRDEEIRRVIQ-------ILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHH-------HHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCcccCCcHHHHHHHHH-------HHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            35677899999998876633222222       221                1122235889999999999999999987

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.00  E-value=0.0031  Score=57.64  Aligned_cols=27  Identities=33%  Similarity=0.589  Sum_probs=24.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+++.+|.+.|++||||||+++.|+..
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            467889999999999999999999876

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.99  E-value=0.0047  Score=57.56  Aligned_cols=45  Identities=13%  Similarity=0.274  Sum_probs=32.8

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      .+...-++..++.+.|+|||||||+.+.|+..+..   ..+.+.+++-
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~   64 (243)
T 1mv5_A           20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQ   64 (243)
T ss_dssp             EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTE
T ss_pred             EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE
Confidence            33333467889999999999999999999987521   2345666653

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.99  E-value=0.0076  Score=55.05  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc-cc--CCC-CCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF-WS--GAA-TNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg-~~--~~~-~~avvIdaDefR  254 (400)
                      .|.+++++|+||||||+++..++...- +.  ..+ ..+.+.+.|++.
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~   51 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK   51 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc
Confidence            567999999999999999988654431 00  122 334456666554

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.98  E-value=0.019  Score=55.54  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=26.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ++-|..+++.|+||+||||+|+.+++.+..
T Consensus        21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           21 GRGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             TCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            456889999999999999999999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.96  E-value=0.0061  Score=59.93  Aligned_cols=41  Identities=24%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ...+|.|.|+|||||||+...|...+  ...+..+.++..|-.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~--~~~~~~v~V~~~dp~  113 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML--TERGHKLSVLAVDPS  113 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEECCC-
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh--hhcCCeEEEEeecCC
Confidence            46689999999999999999999865  223446667766644

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.93  E-value=0.0029  Score=60.16  Aligned_cols=54  Identities=20%  Similarity=0.196  Sum_probs=36.6

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..++..|+.+++...+++.+.   ..  .++                ....|  ++|.|+||+|||++|+.+++.++
T Consensus        17 ~~~~~~f~~i~G~~~~~~~l~---~~--~~~----------------~~~~~--vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           17 TRPVFPFSAIVGQEDMKLALL---LT--AVD----------------PGIGG--VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             -CCCCCGGGSCSCHHHHHHHH---HH--HHC----------------GGGCC--EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCCCCCchhccChHHHHHHHH---HH--hhC----------------CCCce--EEEECCCCccHHHHHHHHHHhCc
Confidence            345678999988877655321   11  111                01123  89999999999999999999873

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=95.93  E-value=0.0082  Score=59.06  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=36.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+.+.+++++|-.|+||||++..||..+  ...+..+++||+|-
T Consensus        13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~l--a~~g~~vllid~D~   54 (334)
T 3iqw_A           13 QRSLRWIFVGGKGGVGKTTTSCSLAIQL--AKVRRSVLLLSTDP   54 (334)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH--TTSSSCEEEEECCS
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHH--HhCCCcEEEEECCC
Confidence            3456899999999999999999999988  56778999999993

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.92  E-value=0.0064  Score=56.98  Aligned_cols=43  Identities=16%  Similarity=0.141  Sum_probs=31.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccC---------CCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG---------AATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~---------~~~~avvIdaDef  253 (400)
                      ....+++|.|+|||||||++..++.... ++         .+..+.+++.++-
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~   79 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDP   79 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCC
Confidence            4667999999999999999999987541 11         1245677876653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.91  E-value=0.0037  Score=58.16  Aligned_cols=43  Identities=21%  Similarity=0.167  Sum_probs=33.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -.+..++.+.|+|||||||+.+.|+.-+.   ...+-+.+++.++.
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~   70 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTN   70 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcc
Confidence            46778999999999999999999997652   12355777765554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.91  E-value=0.0061  Score=59.72  Aligned_cols=42  Identities=21%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .....++.|.|+|||||||+.+.|+..+  ...++.+.+++.|-
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~--~~~~g~v~i~~~d~   93 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLL--TAAGHKVAVLAVDP   93 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhh--hhCCCEEEEEEEcC
Confidence            3567899999999999999999999765  22334555555443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.90  E-value=0.037  Score=59.15  Aligned_cols=39  Identities=21%  Similarity=0.263  Sum_probs=32.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ..-+++.|+||+|||++|+.+++.++     .+.+.++..++.+
T Consensus       488 ~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~  526 (758)
T 1r6b_X          488 VGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYME  526 (758)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSS
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcc
Confidence            34789999999999999999999984     3677888776653

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.89  E-value=0.0052  Score=61.05  Aligned_cols=42  Identities=12%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...++++.|+||+||||++..++...  ...+..+++|+++.-
T Consensus        61 ~~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s  102 (356)
T 1u94_A           61 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHA  102 (356)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCC
Confidence            356799999999999999999998875  223557899998653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.88  E-value=0.0056  Score=65.73  Aligned_cols=57  Identities=14%  Similarity=0.211  Sum_probs=40.6

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+.+|+.+|+.+++.+...+.+...+..                       +.+.=+|+.|+||+||||+|+.|++.+
T Consensus       169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~-----------------------~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-----------------------RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-----------------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCccCchHHHHHHHHHHhC-----------------------CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            345677888999998876655543332211                       122236899999999999999999986

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.88  E-value=0.0043  Score=58.97  Aligned_cols=43  Identities=21%  Similarity=0.143  Sum_probs=32.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -+...++.|.|+|||||||+++.|+.-+.-   ..+.+.+++.++.
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~   76 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHLLGQNLN   76 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEETTEETT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECC
Confidence            356789999999999999999999986621   2455777665543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.88  E-value=0.012  Score=52.23  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+..|++.|.+||||||++..|+..++-   ...+.+++.|...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~---~~~~~~i~~d~~~   69 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGN---EVKIGAMLGDVVS   69 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTT---TSCEEEEECSCCC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhcc---CCeEEEEecCCCC
Confidence            3457888899999999999999988631   2456677777654

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=95.86  E-value=0.0073  Score=59.29  Aligned_cols=42  Identities=21%  Similarity=0.318  Sum_probs=36.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ...+.+++++|..|+||||++..||..+  ...+..+++||+|-
T Consensus        23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~l--A~~G~rVLlvD~D~   64 (349)
T 3ug7_A           23 KDGTKYIMFGGKGGVGKTTMSAATGVYL--AEKGLKVVIVSTDP   64 (349)
T ss_dssp             SCSCEEEEEECSSSTTHHHHHHHHHHHH--HHSSCCEEEEECCT
T ss_pred             cCCCEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence            3567899999999999999999999887  45677999999997

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.86  E-value=0.0052  Score=61.07  Aligned_cols=27  Identities=33%  Similarity=0.506  Sum_probs=24.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++..+++++|++||||||+++.|+..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            456799999999999999999999876

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.86  E-value=0.0061  Score=54.59  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .++.++|++||||||++..|...+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            478899999999999999999875

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=95.85  E-value=0.0081  Score=58.41  Aligned_cols=42  Identities=21%  Similarity=0.335  Sum_probs=36.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...+++++|-.|+||||++..||..+  ...|..+.+||+|--
T Consensus        17 ~~~~i~v~sgkGGvGKTTva~~LA~~l--A~~G~rVllvD~D~~   58 (329)
T 2woo_A           17 TSLKWIFVGGKGGVGKTTTSCSLAIQM--SKVRSSVLLISTDPA   58 (329)
T ss_dssp             TTCCEEEEECSSSSSHHHHHHHHHHHH--HTSSSCEEEEECCTT
T ss_pred             CCCEEEEEeCCCCCcHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence            456789999999999999999999988  566789999999953

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.83  E-value=0.0049  Score=61.86  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=25.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -+.+.++++.|+|||||||+++.|+..+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4567899999999999999999999887

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.82  E-value=0.0088  Score=60.49  Aligned_cols=58  Identities=21%  Similarity=0.387  Sum_probs=33.6

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +--+..+||..|+..+.+.+  +++..+.+.   +.                 ...+ .++|.|+||+||||++..++..
T Consensus        12 ~~~~~~~~p~~~~~Ln~~Q~--~av~~~~~~---i~-----------------~~~~-~~li~G~aGTGKT~ll~~~~~~   68 (459)
T 3upu_A           12 SGLVPRGSHMTFDDLTEGQK--NAFNIVMKA---IK-----------------EKKH-HVTINGPAGTGATTLTKFIIEA   68 (459)
T ss_dssp             ---------CCSSCCCHHHH--HHHHHHHHH---HH-----------------SSSC-EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCccccCCCccccCCHHHH--HHHHHHHHH---Hh-----------------cCCC-EEEEEeCCCCCHHHHHHHHHHH
Confidence            34578899999998765443  233333332   11                 1122 8899999999999999999988


Q ss_pred             c
Q 015774          236 S  236 (400)
Q Consensus       236 l  236 (400)
                      +
T Consensus        69 l   69 (459)
T 3upu_A           69 L   69 (459)
T ss_dssp             H
T ss_pred             H
Confidence            7

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.82  E-value=0.0098  Score=60.38  Aligned_cols=40  Identities=28%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +..+++++|++||||||+.+.|+..+.  ...++ +++..|.+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~-I~~~ed~i  205 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN--SSERN-ILTVEDPI  205 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSC-EEEEESSC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCE-EEEecccc
Confidence            456999999999999999999998873  22333 44444544

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.81  E-value=0.018  Score=55.67  Aligned_cols=40  Identities=10%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCCCeEEEeCC
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEAD  251 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg-~~~~~~~avvIdaD  251 (400)
                      +..+++.|+||+||||++..+++..+ |....+++..++++
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~   58 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE   58 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence            56899999999999999999998642 23345688889876

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.81  E-value=0.0049  Score=55.31  Aligned_cols=43  Identities=21%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...+++++|.||+||||++..++.... ...+..+++++.++-
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~~   70 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEER   70 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSC
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccCC
Confidence            5677999999999999999998765421 112346778887654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.80  E-value=0.0036  Score=57.78  Aligned_cols=43  Identities=21%  Similarity=0.184  Sum_probs=32.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -++..++.+.|+|||||||+.+.|+.-+..   ..+-+.+++-++.
T Consensus        27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   69 (224)
T 2pcj_A           27 VKKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVD   69 (224)
T ss_dssp             EETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence            356779999999999999999999976521   2355777665443

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.76  E-value=0.0099  Score=56.12  Aligned_cols=41  Identities=10%  Similarity=0.209  Sum_probs=33.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ...-|+++|.||+||||++-.++..+  ...|.++++++.|.-
T Consensus         5 g~l~I~~~~kgGvGKTt~a~~la~~l--~~~G~~V~v~d~D~q   45 (228)
T 2r8r_A            5 GRLKVFLGAAPGVGKTYAMLQAAHAQ--LRQGVRVMAGVVETH   45 (228)
T ss_dssp             CCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCCT
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHH--HHCCCCEEEEEeCCC
Confidence            34569999999999999999999887  345678889998863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.76  E-value=0.0059  Score=52.92  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      |-+.++.|++||||||++.+|.--++
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            44899999999999999999987664

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.76  E-value=0.013  Score=64.05  Aligned_cols=41  Identities=20%  Similarity=0.355  Sum_probs=33.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ..+++.|+||+|||++|+.|+..+.  ..+...+.++..++.+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~  629 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYME  629 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccc
Confidence            4889999999999999999999873  2344678898887764

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.75  E-value=0.0089  Score=54.34  Aligned_cols=38  Identities=21%  Similarity=0.163  Sum_probs=31.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      ....++++.|+|||||||.+-.++.++  .+.+..+.++.
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~--~~~g~kV~v~k   43 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA--KIAKQKIQVFK   43 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEE
Confidence            345799999999999999999999998  34566777663

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.75  E-value=0.0045  Score=55.94  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++.+.|+|||||||+++.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            57899999999999999999887

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.74  E-value=0.0048  Score=57.47  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=26.5

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       205 l~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +...-++..++.|.|++||||||+.+.|+..+
T Consensus        24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33334677899999999999999999998875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.73  E-value=0.0072  Score=58.41  Aligned_cols=24  Identities=42%  Similarity=0.744  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+++|+|++||||||+.+.|+...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            378899999999999999999764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.72  E-value=0.012  Score=57.50  Aligned_cols=43  Identities=12%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe  252 (400)
                      +...++++.|+||+||||++..++...-.+.    .+.++++|+++.
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            5678999999999999999999998631111    345788999877

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.71  E-value=0.013  Score=54.40  Aligned_cols=46  Identities=15%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL  263 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L  263 (400)
                      ..++.+|+++|.|||||+|++..+.+.+|.    .++.+++     =.|++.+..
T Consensus         8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~----~~~~vv~-----msD~iK~~~   53 (202)
T 3ch4_B            8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA----DVCAVLR-----LSGPLKEQY   53 (202)
T ss_dssp             CCCSEEEEEEECTTSSHHHHHHHHHHHHCT----TTEEEEC-----THHHHHHHH
T ss_pred             cCCCEEEEEECCCCCChHHHHHHHHHHcCC----CCceEEE-----ccHHHHHHH
Confidence            356789999999999999999999987742    1344554     246665544

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.70  E-value=0.0087  Score=57.85  Aligned_cols=43  Identities=16%  Similarity=0.323  Sum_probs=33.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~----~~~~~avvIdaDe  252 (400)
                      +...++++.|+||+||||++..++...-.+    +.+.++++|+++.
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            456799999999999999999999764111    0145789999887

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=95.68  E-value=0.0086  Score=57.53  Aligned_cols=43  Identities=16%  Similarity=0.278  Sum_probs=33.6

Q ss_pred             CCCEEEEEEc-CCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGG-GMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G-~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ..+.+|+++| .+|+||||++..||..+  ...+..+++||+|.-+
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~l--A~~G~rVLLID~D~r~  145 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVI--AQSDQKVLFIDADLRR  145 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHH--HHTTCCEEEEECCTTT
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHH--HhCCCcEEEEECCCCC
Confidence            3445666655 58999999999999988  4567789999999754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.67  E-value=0.0081  Score=64.22  Aligned_cols=57  Identities=14%  Similarity=0.127  Sum_probs=39.6

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+.+|+.+|+.+++.....+.   +++    ++.                ...+.-+++.|+||+||||+++.|+..+
T Consensus       175 ~l~~~~~~~~~d~~iGr~~~i~~---l~~----~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          175 NLNQLARVGGIDPLIGREKELER---AIQ----VLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             BHHHHHHTTCSCCCCSCHHHHHH---HHH----HHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCCCccCCHHHHHH---HHH----HHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            45677888999988876543322   222    221                1233456899999999999999999987

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.67  E-value=0.0057  Score=57.30  Aligned_cols=37  Identities=24%  Similarity=0.146  Sum_probs=28.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      ++ .++.+.|+|||||||+.+.|+.-+..   ..+-+.+++
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g   59 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNG   59 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETT
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC
Confidence            45 89999999999999999999987621   234466654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.67  E-value=0.014  Score=55.97  Aligned_cols=41  Identities=22%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.-+++.|+||+|||++|+.++....  ..+...+.++...+.
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~~   65 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAALN   65 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSCC
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCCC
Confidence            34578999999999999999999762  234467888877765

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=95.64  E-value=0.0099  Score=56.32  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=33.3

Q ss_pred             CCEEEEEE-cCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMG-GGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~-G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.+|+++ +.+|+||||++..||..+  ...+..+++||+|.-+
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~l--A~~G~rVLLID~D~~~  123 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAY--AQAGYKTLIVDGDMRK  123 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCSSS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCC
Confidence            44555555 559999999999999988  4567799999999765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.63  E-value=0.013  Score=62.81  Aligned_cols=43  Identities=19%  Similarity=0.503  Sum_probs=34.1

Q ss_pred             CCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          211 SPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       211 ~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .|. .+++.|+||+|||++|+.+++.+.  ..+.+.+.++..++.+
T Consensus       519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~  562 (758)
T 3pxi_A          519 RPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYME  562 (758)
T ss_dssp             SCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhccc
Confidence            343 689999999999999999999872  2345778888777764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.62  E-value=0.0056  Score=57.93  Aligned_cols=42  Identities=26%  Similarity=0.297  Sum_probs=32.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.|.|+|||||||+.+.|+.-+..   ..+.+.+++.++
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~   70 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNI   70 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEc
Confidence            467789999999999999999999977621   235567766444

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.62  E-value=0.011  Score=57.19  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=33.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+..+++++|.||+||||++..++....  .++.++++++.++
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a--~~g~~vl~~slE~  106 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEM  106 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHH--TTTCEEEEEESSS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEECCC
Confidence            5677999999999999999999997753  2345778888764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.61  E-value=0.0067  Score=57.54  Aligned_cols=44  Identities=16%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.|.|+|||||||+.+.|+.....+ ...+.+.+++.++
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~i   86 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYE-VTGGTVEFKGKDL   86 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEEG
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEEC
Confidence            4677899999999999999999999852100 0124566766544

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.59  E-value=0.014  Score=52.53  Aligned_cols=40  Identities=15%  Similarity=0.139  Sum_probs=33.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDef  253 (400)
                      ..+.+.++-.|+||||++..||..+  ... +..+.+||.|--
T Consensus         5 ~vI~v~s~kGGvGKTt~a~~LA~~l--a~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            5 RVFGFVSAKGGDGGSCIAANFAFAL--SQEPDIHVLAVDISLP   45 (245)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHH--TTSTTCCEEEEECCTT
T ss_pred             eEEEEECCCCCcchHHHHHHHHHHH--HhCcCCCEEEEECCCC
Confidence            4566777889999999999999998  555 789999999965

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.59  E-value=0.0088  Score=55.99  Aligned_cols=25  Identities=20%  Similarity=0.131  Sum_probs=22.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+++.||||+||||+|..|++.+
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999999987

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.57  E-value=0.0051  Score=57.31  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.+.|+|||||||+.+.|+.-+..   ..+.+.+++-.+
T Consensus        29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~   70 (240)
T 1ji0_A           29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDI   70 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence            356779999999999999999999987521   234566665444

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.57  E-value=0.006  Score=57.14  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHh--ccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKE--SFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~--lg~~~~~~~avvIdaDefR  254 (400)
                      -++..++.|.|+|||||||+.+.|+..  +.-   ..+.+.+++-++.
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~   70 (250)
T 2d2e_A           26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENIL   70 (250)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECC
Confidence            356779999999999999999999985  210   1245777665543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.55  E-value=0.0061  Score=57.97  Aligned_cols=42  Identities=19%  Similarity=0.287  Sum_probs=31.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.|.|+|||||||+.+.|+..+..   ..+-+.+++-++
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i   88 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINL   88 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEES
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEC
Confidence            467789999999999999999999977621   234566765443

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.53  E-value=0.0057  Score=51.88  Aligned_cols=32  Identities=19%  Similarity=0.135  Sum_probs=24.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +++.|+||+|||++|+.++...+      ..+.++..+
T Consensus        30 vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~   61 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHKNGT------PWVSPARVE   61 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT
T ss_pred             EEEECCCCccHHHHHHHHHHhCC------CeEEechhh
Confidence            68899999999999999988751      445565443

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=95.53  E-value=0.0087  Score=53.63  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      |.++|-.|+||||++..||..+  ...+..+.+||.|-
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~   38 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIM--ASDYDKIYAVDGDP   38 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHH--TTTCSCEEEEEECT
T ss_pred             EEEecCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence            3448999999999999999998  56678999999997

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.52  E-value=0.0054  Score=56.72  Aligned_cols=28  Identities=39%  Similarity=0.496  Sum_probs=25.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -++..++.+.|++||||||+.+.|+..+
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           31 IERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567799999999999999999999876

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.52  E-value=0.0054  Score=57.71  Aligned_cols=42  Identities=24%  Similarity=0.158  Sum_probs=31.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.+.|+|||||||+.+.|+.-+..   ..+.+.+++-++
T Consensus        30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~   71 (257)
T 1g6h_A           30 VNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDI   71 (257)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence            356789999999999999999999977621   234566765444

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.51  E-value=0.0065  Score=57.41  Aligned_cols=42  Identities=21%  Similarity=0.157  Sum_probs=32.3

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       208 ~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .-++..++.|.|++||||||+.+.|+..+.   . .+.+.+++-++
T Consensus        42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i   83 (260)
T 2ghi_A           42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNV   83 (260)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEG
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEh
Confidence            346778999999999999999999998762   1 35577766444

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=95.50  E-value=0.013  Score=57.87  Aligned_cols=41  Identities=20%  Similarity=0.331  Sum_probs=36.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~--~~~~~avvIdaDe  252 (400)
                      ....+++++|-.|.||||++..||..+  .  ..|..+.+||+|-
T Consensus        16 ~~~~i~v~sgKGGvGKTTvaanLA~~l--A~~~~G~rVLLvD~D~   58 (354)
T 2woj_A           16 TTHKWIFVGGKGGVGKTTSSCSIAIQM--ALSQPNKQFLLISTDP   58 (354)
T ss_dssp             SSCCEEEEEESTTSSHHHHHHHHHHHH--HHHCTTSCEEEEECCS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHH--HHhcCCCeEEEEECCC
Confidence            346799999999999999999999888  5  6678999999997

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.50  E-value=0.0065  Score=57.48  Aligned_cols=42  Identities=24%  Similarity=0.139  Sum_probs=31.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -.+..++.|.|+|||||||+.+.|+.-+..   ..+.+.+++-.+
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~   79 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNV   79 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEET
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence            467789999999999999999999977521   234566665443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.50  E-value=0.0085  Score=59.50  Aligned_cols=26  Identities=35%  Similarity=0.480  Sum_probs=23.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.-+++++|++||||||+.+.++..+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34599999999999999999998876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.49  E-value=0.011  Score=57.80  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=23.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ...+.|.|+|||||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            57889999999999999999999873

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.48  E-value=0.013  Score=53.67  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ...-+++.|+||+||||++.+|.++
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4568999999999999999999986

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=95.48  E-value=0.014  Score=55.01  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=23.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+|.++|.+||||||+++.|...+|+
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~   27 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSA   27 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            47899999999999999999998865

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.46  E-value=0.0092  Score=59.53  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=33.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...+++|.|+||+||||++..++...  ...+..+++|+++.-
T Consensus        72 ~~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s  113 (366)
T 1xp8_A           72 PRGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHA  113 (366)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCC
T ss_pred             cCCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence            356689999999999999999998875  223568899998864

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=95.45  E-value=0.011  Score=61.71  Aligned_cols=42  Identities=19%  Similarity=0.324  Sum_probs=36.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ...+.+++++|.+|+||||++..||..+  ...|..+++||+|-
T Consensus         5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~l--A~~G~rVLlvd~D~   46 (589)
T 1ihu_A            5 QNIPPYLFFTGKGGVGKTSISCATAIRL--AEQGKRVLLVSTDP   46 (589)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCT
T ss_pred             CCCCEEEEEeCCCcCHHHHHHHHHHHHH--HHCCCcEEEEECCC
Confidence            3456789999999999999999999987  45677899999994

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.45  E-value=0.0059  Score=57.27  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -++..++.|.|+|||||||+.+.|+.-+..   ..+.+.+++-++.
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~   74 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLA   74 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhh
Confidence            356789999999999999999999887621   2355777765443

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.45  E-value=0.0069  Score=57.32  Aligned_cols=28  Identities=32%  Similarity=0.379  Sum_probs=25.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -....++.|.|+|||||||+.+.|+.-+
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4677899999999999999999998765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.45  E-value=0.007  Score=57.61  Aligned_cols=42  Identities=19%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.|.|+|||||||+.+.|+..+.-   ..+.+.+++-++
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i   83 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPL   83 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEG
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEc
Confidence            467789999999999999999999987621   235577766444

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.44  E-value=0.0056  Score=58.66  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=31.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++.+.|+|||||||+.+.|+.-+.-   ..+.+.+++.++
T Consensus        31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i   72 (275)
T 3gfo_A           31 IKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPI   72 (275)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence            356789999999999999999999976521   234566766544

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.44  E-value=0.0058  Score=59.57  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      -++..++.|.|++||||||+++.|+.-+.-   ..+.+.+++-+++.
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~  120 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQ  120 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEccc
Confidence            366789999999999999999999887621   23557787766653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.43  E-value=0.005  Score=56.81  Aligned_cols=41  Identities=20%  Similarity=0.157  Sum_probs=30.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -++..++.+.|+|||||||+.+.|+..+..   ..+.+.+++.+
T Consensus        32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~   72 (214)
T 1sgw_A           32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVP   72 (214)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEE
Confidence            356778999999999999999999876521   23456666543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.42  E-value=0.035  Score=49.33  Aligned_cols=39  Identities=15%  Similarity=0.282  Sum_probs=27.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+..|++.|.+|+||||++..|+....-   ......|+.|.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~---~~~~~~i~~d~   75 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD---KYKIACIAGDV   75 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTT---TCCEEEEEEET
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhcc---CCeEEEEECCC
Confidence            3456777799999999999999988631   13445566553

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.40  E-value=0.0098  Score=61.83  Aligned_cols=40  Identities=20%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDef  253 (400)
                      .+..++++|++||||||+++.|+..+.  . ..+.+.| +.+++
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~--~-~~giitied~~E~  299 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP--P-DAKVVSIEDTREI  299 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC--T-TCCEEEEESSCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC--C-CCCEEEEcCcccc
Confidence            455799999999999999999998773  1 2344554 34434

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.40  E-value=0.0089  Score=52.32  Aligned_cols=40  Identities=28%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.+.++-.|+||||++..||..+  ...+..+.+||.|--.
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~~   42 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQM   42 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTTC
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCCC
Confidence            455667889999999999999988  4567789999999544

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.39  E-value=0.015  Score=57.29  Aligned_cols=44  Identities=9%  Similarity=0.191  Sum_probs=32.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccc-cCC---CCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW-SGA---ATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~-~~~---~~~avvIdaDef  253 (400)
                      +...++.|.|+|||||||++..++..... +..   ++.++.|++...
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            56789999999999999999999987521 111   134588887653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.39  E-value=0.0085  Score=58.53  Aligned_cols=28  Identities=18%  Similarity=0.104  Sum_probs=25.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -++..++.|.|+|||||||+++.|+.-+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3567799999999999999999999876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.39  E-value=0.018  Score=57.81  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ..|+|.|+|||||||+++.|+..+++
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            46888999999999999999998865

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=95.38  E-value=0.015  Score=57.54  Aligned_cols=40  Identities=20%  Similarity=0.352  Sum_probs=35.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCC
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEAD  251 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~--~~~~~avvIdaD  251 (400)
                      ..+.+++++|-.|+||||++..||..+  .  ..+..+++||+|
T Consensus        16 ~~~~i~~~~gkGGvGKTt~a~~lA~~l--a~~~~g~~vllid~D   57 (348)
T 3io3_A           16 DSLKWIFVGGKGGVGKTTTSSSVAVQL--ALAQPNEQFLLISTD   57 (348)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHHHH--HHHCTTSCEEEEECC
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHH--HHhcCCCeEEEEECC
Confidence            456799999999999999999999887  5  567899999999

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.35  E-value=0.011  Score=58.26  Aligned_cols=36  Identities=25%  Similarity=0.528  Sum_probs=28.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      ...+++++|++||||||+++.|+..+.-   ..+.+.++
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie  209 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF---DQRLITIE  209 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC---CceEEEEC
Confidence            4458899999999999999999988731   34556665

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.32  E-value=0.0066  Score=55.66  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..++.+.|++||||||+++.|+..
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458889999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.32  E-value=0.0068  Score=57.10  Aligned_cols=40  Identities=28%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ....++.+.|+|||||||+.+.|+..+.  . . +-+.+++..+
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p-~-G~i~~~g~~~   63 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTS--G-K-GSIQFAGQPL   63 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC--C-E-EEEEETTEEG
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC--C-C-eEEEECCEEC
Confidence            5677999999999999999999998762  1 2 4566655433

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.29  E-value=0.021  Score=53.50  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +++|.|++|+||||+++.++++.+     ...++++...+
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~-----~~~~~~~~~~~   66 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELN-----LPYIYLDLRKF   66 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT-----CCEEEEEGGGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEEchhh
Confidence            899999999999999999999873     24678886654

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.29  E-value=0.017  Score=54.77  Aligned_cols=44  Identities=25%  Similarity=0.261  Sum_probs=31.0

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      |..++.....+.+++|+|||||||.+-.++.+.  .+.+.+++++.
T Consensus        11 p~~~~~~~g~l~v~~G~MgsGKTT~lL~~~~r~--~~~g~kvli~k   54 (234)
T 2orv_A           11 PGSPSKTRGQIQVILGPMFSGKSTELMRRVRRF--QIAQYKCLVIK   54 (234)
T ss_dssp             -------CCEEEEEECCTTSCHHHHHHHHHHHH--HTTTCCEEEEE
T ss_pred             CCCCCCCceEEEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEe
Confidence            333334567899999999999999999998887  45666776664

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=95.29  E-value=0.02  Score=54.81  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=35.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +..++.+.++.+|+||||++..||..+  ...+..+++||+|.-+
T Consensus        91 ~~kvI~vts~kgG~GKTtva~nLA~~l--A~~G~rVLLID~D~~~  133 (286)
T 3la6_A           91 QNNVLMMTGVSPSIGMTFVCANLAAVI--SQTNKRVLLIDCDMRK  133 (286)
T ss_dssp             TCCEEEEEESSSSSSHHHHHHHHHHHH--HTTTCCEEEEECCTTT
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHH--HhCCCCEEEEeccCCC
Confidence            345566777789999999999999988  5567899999999865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.28  E-value=0.007  Score=57.02  Aligned_cols=28  Identities=29%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -++..++.+.|+|||||||+.+.|+..+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           28 LNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567799999999999999999999875

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.28  E-value=0.016  Score=55.47  Aligned_cols=43  Identities=16%  Similarity=0.287  Sum_probs=32.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----------CCC----CCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----------GAA----TNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~----------~~~----~~avvIdaDe  252 (400)
                      +...+++++|+||+||||++..++...-.+          ..+    .++++|+++.
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~  152 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG  152 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence            467899999999999999999998752111          122    4778899886

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=95.26  E-value=0.016  Score=53.24  Aligned_cols=39  Identities=23%  Similarity=0.266  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.++|-.|+||||++..||..+  ...+..+.+||.|--.
T Consensus         3 vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~q~   41 (269)
T 1cp2_A            3 QVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECTTS
T ss_pred             EEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCCCC
Confidence            45557999999999999999988  4567799999999643

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.25  E-value=0.0074  Score=57.81  Aligned_cols=41  Identities=20%  Similarity=0.080  Sum_probs=30.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -++..++.|.|+|||||||+.+.|+..+..   ..+.+.+++-+
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~   84 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGKM   84 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTBC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCEE
Confidence            356779999999999999999999987621   23456666543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.22  E-value=0.013  Score=50.65  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .|-+.++.|++||||||+..+|.--+
T Consensus        22 ~~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           22 KEGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999999988655

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.19  E-value=0.02  Score=55.36  Aligned_cols=27  Identities=33%  Similarity=0.375  Sum_probs=23.9

Q ss_pred             CCCEEEEE--EcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLM--GGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL--~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..|..++|  .|+||+||||+++.+++.+
T Consensus        48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            35678888  9999999999999999876

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.13  E-value=0.017  Score=56.82  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL  263 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L  263 (400)
                      -+++.|++||||||+++.++..+  ...+..++++|.+  .+...+.+.+
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~--~~~~~~~~~~D~~--~~~~~~~~~~   82 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLRE--YMQGSRVIIIDPE--REYKEMCRKL   82 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEESS--CCSHHHHHHT
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHH--HHCCCEEEEEeCC--cCHHHHHHHc
Confidence            36789999999999999998876  2345677888765  3333444443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.12  E-value=0.012  Score=57.53  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=27.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      ..++++.|++||||||+++.|+..+.-   ..+.+.++
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~  205 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIE  205 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEEC
Confidence            458899999999999999999988732   34556665

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=95.10  E-value=0.015  Score=53.56  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=33.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+++.+.++-.|+||||++..||..+  . .+..+.+||.|--.
T Consensus        27 ~~vI~v~s~kGGvGKTT~a~~LA~~l--a-~g~~VlliD~D~~~   67 (267)
T 3k9g_A           27 PKIITIASIKGGVGKSTSAIILATLL--S-KNNKVLLIDMDTQA   67 (267)
T ss_dssp             CEEEEECCSSSSSCHHHHHHHHHHHH--T-TTSCEEEEEECTTC
T ss_pred             CeEEEEEeCCCCchHHHHHHHHHHHH--H-CCCCEEEEECCCCC
Confidence            34455668899999999999999998  4 57899999999643

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=94.98  E-value=0.018  Score=51.76  Aligned_cols=39  Identities=21%  Similarity=0.377  Sum_probs=32.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+.+.++-.|+||||++..||..+  ...+..+.+||.|.-
T Consensus         4 ~i~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~   42 (237)
T 1g3q_A            4 IISIVSGKGGTGKTTVTANLSVAL--GDRGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCCCC
Confidence            466677889999999999999988  445778999999974

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=94.97  E-value=0.022  Score=52.75  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ...+.+.++-.|+||||++..||..+  ...+.++.+||.|--.
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~~~   59 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHY--ARQGKKVGILDADFLG   59 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHH--HHTTCCEEEEECCSSC
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCC
Confidence            34566778889999999999999988  4457789999999765

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.94  E-value=0.015  Score=58.61  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.|.|+|||||||+.+.|+.-..-   ..+-+.+++.++
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~   67 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRM   67 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence            456789999999999999999999987621   234466665544

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=94.91  E-value=0.023  Score=53.06  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      ....+++++|+|||||||.+-.++.++  .+.+.+++++.
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kVli~k   63 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT--QFAKQHAIVFK   63 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEE
Confidence            456899999999999999999999988  45667777774

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.91  E-value=0.0082  Score=53.51  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=25.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .++.+.|++||||||+++.|+..+.-.+-..+.+.+++..+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i   43 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD   43 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence            36788999999999999999988731000134566665543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.90  E-value=0.021  Score=57.62  Aligned_cols=43  Identities=9%  Similarity=0.146  Sum_probs=31.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe  252 (400)
                      ....++.|.|+|||||||++..|+-..-.+.    .+.++++|++..
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            4567999999999999999998763321110    234578899876

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=94.89  E-value=0.039  Score=54.28  Aligned_cols=39  Identities=18%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      ..++.+.+|-.|+||||++..||..+  ...+.++++||.|
T Consensus       143 ~kvIav~s~KGGvGKTT~a~nLA~~L--a~~g~rVlliD~D  181 (373)
T 3fkq_A          143 SSVVIFTSPCGGVGTSTVAAACAIAH--ANMGKKVFYLNIE  181 (373)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH--HHHTCCEEEEECC
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHH--HhCCCCEEEEECC
Confidence            34455666799999999999999887  3456789999999

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=94.89  E-value=0.019  Score=53.74  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.++|-.|+||||++..||..+  ...+..+.+||.|--.
T Consensus         4 vIavs~KGGvGKTT~a~nLA~~L--a~~G~rVlliD~D~q~   42 (289)
T 2afh_E            4 QCAIYGKGGIGKSTTTQNLVAAL--AEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEECSSS
T ss_pred             EEEEeCCCcCcHHHHHHHHHHHH--HHCCCeEEEEecCCCC
Confidence            45558999999999999999987  4457789999999643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.88  E-value=0.012  Score=56.65  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=27.3

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+...-++..++.+.|++||||||+.+.|+..+
T Consensus        55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3333334677899999999999999999998775

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=94.84  E-value=0.027  Score=52.77  Aligned_cols=41  Identities=12%  Similarity=0.162  Sum_probs=32.9

Q ss_pred             CEEEEEE--cCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMG--GGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~--G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+.+..  +-.|+||||++..||..+  ...+..+.+||.|--.
T Consensus        35 ~~i~v~~~s~KGGvGKTT~a~nLA~~l--a~~G~rVlliD~D~q~   77 (298)
T 2oze_A           35 EAIVILNNYFKGGVGKSKLSTMFAYLT--DKLNLKVLMIDKDLQA   77 (298)
T ss_dssp             SCEEEEECCSSSSSSHHHHHHHHHHHH--HHTTCCEEEEEECTTC
T ss_pred             cEEEEEeccCCCCchHHHHHHHHHHHH--HhCCCeEEEEeCCCCC
Confidence            3455555  699999999999999887  4467789999999754

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=94.84  E-value=0.024  Score=51.94  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+.+.++-.|+||||++..||..+  ...+..+.+||.|.-
T Consensus         4 ~I~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~   42 (263)
T 1hyq_A            4 TITVASGKGGTGKTTITANLGVAL--AQLGHDVTIVDADIT   42 (263)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH--HHTTCCEEEEECCCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHH--HhCCCcEEEEECCCC
Confidence            466778899999999999999988  445778999999974

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=94.83  E-value=0.02  Score=51.99  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+.+.++-.|+||||++..||..+  ...+.++.+||.|.
T Consensus         4 vi~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~   41 (260)
T 3q9l_A            4 IIVVTSGKGGVGKTTSSAAIATGL--AQKGKKTVVIDFAI   41 (260)
T ss_dssp             EEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCC
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHH--HhCCCcEEEEECCC
Confidence            466778889999999999999988  45677999999997

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.82  E-value=0.022  Score=57.60  Aligned_cols=42  Identities=12%  Similarity=0.202  Sum_probs=33.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+..+++++|+||+||||++..++...-. ..+.++.+++.+.
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEM  242 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCC
Confidence            56779999999999999999999887521 1244788888765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.80  E-value=0.014  Score=55.47  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+.|+|||||||+.+.|+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999876

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.80  E-value=0.013  Score=55.75  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+...-+ ..++.+.|+|||||||+.+.|+..+
T Consensus        22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            33443346 7899999999999999999998765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.79  E-value=0.016  Score=57.97  Aligned_cols=42  Identities=17%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.|.|+|||||||+.+.|+.-..-   ..+-+.+++.++
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~i   68 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGKTI   68 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence            356789999999999999999999986521   234466655433

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.78  E-value=0.029  Score=50.58  Aligned_cols=39  Identities=13%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.+.++-.|+||||++..||..+  ...+ ++.+||.|.-.
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~l--a~~g-~VlliD~D~q~   40 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYL--ALQG-ETLLIDGDPNR   40 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH--HTTS-CEEEEEECTTC
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHH--HhcC-CEEEEECCCCC
Confidence            466778999999999999999998  4567 99999999654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.75  E-value=0.024  Score=53.17  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=27.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+++|.|++|+||||+++.++++.+       .++++.+.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeec
Confidence            4889999999999999999998863       47777543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.75  E-value=0.017  Score=47.49  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -|++.|.+|+||||++..+....
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47889999999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.74  E-value=0.016  Score=50.74  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+.|.|++||||||+.+.++...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3578999999999999999999865

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.74  E-value=0.022  Score=56.40  Aligned_cols=42  Identities=12%  Similarity=0.301  Sum_probs=33.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+..+++++|.||+||||++..++...-  ..+.++.+++.+.=
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSlEms   85 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSLEMS   85 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEESSSC
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCC
Confidence            4567999999999999999999988752  24557788887653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.73  E-value=0.017  Score=50.59  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .-+.|.|++||||||+.+.|....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            457899999999999999999763

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.70  E-value=0.017  Score=57.50  Aligned_cols=41  Identities=15%  Similarity=0.109  Sum_probs=30.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -+...++.|.|+|||||||+.+.|+.-..-   ..+-+.+++.+
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~   66 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVL   66 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEE
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEE
Confidence            457789999999999999999999976521   23445665433

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.66  E-value=0.018  Score=47.75  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|++.|.+|+||||+...|....
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC
Confidence            4457899999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.65  E-value=0.018  Score=47.52  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |++.|.+|+||||++..+....
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6888999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.65  E-value=0.022  Score=58.68  Aligned_cols=41  Identities=17%  Similarity=0.048  Sum_probs=30.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHH--HHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDI--MKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~L--A~~lg~~~~~~~avvIdaDef  253 (400)
                      +...+++|.|+|||||||+++.+  +....   .+.+.+.|+..+.
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~   79 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEET   79 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence            46789999999999999999994  44331   1246788887663

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.63  E-value=0.018  Score=57.40  Aligned_cols=42  Identities=19%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.|.|+|||||||+.+.|+.-..-   ..+-+.+++.++
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i   67 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDV   67 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence            456789999999999999999999976521   234466655433

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.63  E-value=0.012  Score=51.46  Aligned_cols=28  Identities=21%  Similarity=0.394  Sum_probs=23.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ......+.|.|+|||||||+.+.|+...
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3566789999999999999999987543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.59  E-value=0.01  Score=65.18  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +.|.-+|+.||||+|||.+|+++|.+++.     +.+.+++.+
T Consensus       509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-----~f~~v~~~~  546 (806)
T 3cf2_A          509 TPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPE  546 (806)
T ss_dssp             CCCSCCEEESSTTSSHHHHHHHHHHTTTC-----EEEECCHHH
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHhCC-----ceEEeccch
Confidence            56777999999999999999999999864     445555433

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.57  E-value=0.027  Score=57.46  Aligned_cols=43  Identities=12%  Similarity=0.104  Sum_probs=34.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ....+++|+|.||+||||++..++...- ...+.++++++.++=
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~~a-~~~g~~vl~~s~E~s  282 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQWG-TAMGKKVGLAMLEES  282 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHHHT-TTSCCCEEEEESSSC
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHHHH-HhcCCcEEEEeccCC
Confidence            4667999999999999999999998762 112567889987653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.55  E-value=0.031  Score=57.60  Aligned_cols=41  Identities=15%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+..+++|.|+|||||||++..++...  ...+..++.+..++
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~--~~~G~~vi~~~~ee  319 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENA--CANKERAILFAYEE  319 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEESSS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH--HhCCCCEEEEEEeC
Confidence            466799999999999999999999876  22344566676554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.54  E-value=0.017  Score=57.53  Aligned_cols=41  Identities=22%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -+...++.|.|+|||||||+.+.|+.-...   ..+-+.++..+
T Consensus        38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~   78 (355)
T 1z47_A           38 IREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKR   78 (355)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEE
Confidence            356779999999999999999999976521   23446665433

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.53  E-value=0.025  Score=47.49  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.-|++.|.+|+||||+...|....
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCc
Confidence            44568899999999999999998763

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.53  E-value=0.02  Score=57.33  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=30.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -+...++.|.|+|||||||+.+.|+.-...   ..+-+.+++.+
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~   74 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRD   74 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEE
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEE
Confidence            456789999999999999999999976521   23446666543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.52  E-value=0.025  Score=59.08  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=32.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++..++.+.|++||||||+++.|+..+.-   ..+.+.+++-+++
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~  408 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYDV---DSGSICLDGHDVR  408 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEhh
Confidence            45678999999999999999999987631   2355777765554

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.52  E-value=0.021  Score=47.02  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .=|++.|.+|+||||+...+....
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999998654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.50  E-value=0.021  Score=47.06  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|++.|.+|+||||+...|....
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            3458899999999999999998764

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.49  E-value=0.024  Score=57.70  Aligned_cols=43  Identities=12%  Similarity=0.020  Sum_probs=34.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+..+++++|.||+||||++..++...-.  .+.++++++.++=.
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~--~g~~vl~fSlEms~  237 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLEMGK  237 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHH--TTCEEEEECSSSCT
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHH--cCCEEEEEECCCCH
Confidence            46679999999999999999999987632  35578888877543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.48  E-value=0.015  Score=57.61  Aligned_cols=42  Identities=19%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -+...++.|.|+|||||||+.+.|+.-..   ...+-+.+++.++
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i   64 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDV   64 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEEC
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEEC
Confidence            46678999999999999999999997652   1234566765444

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.47  E-value=0.026  Score=48.23  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.-|++.|.+|+||||+...|...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.46  E-value=0.027  Score=47.45  Aligned_cols=27  Identities=26%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.-|++.|.+|+||||+...|....
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            455678899999999999999998753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.45  E-value=0.021  Score=57.19  Aligned_cols=43  Identities=21%  Similarity=0.266  Sum_probs=32.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -++..++-+.|+|||||||+.+.|+.-+.   -..+-+.+++.++.
T Consensus        51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~   93 (366)
T 3tui_C           51 VPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELT   93 (366)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECC
Confidence            46778999999999999999999998652   12355777765554

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=94.45  E-value=0.021  Score=52.71  Aligned_cols=41  Identities=17%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+.+.+.++-.|+||||++..||..+  ...+..+.+||.|-.
T Consensus         6 ~~vI~v~s~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~   46 (257)
T 1wcv_1            6 VRRIALANQKGGVGKTTTAINLAAYL--ARLGKRVLLVDLDPQ   46 (257)
T ss_dssp             CCEEEECCSSCCHHHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred             CEEEEEEeCCCCchHHHHHHHHHHHH--HHCCCCEEEEECCCC
Confidence            34555667888999999999999988  445779999999974

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.45  E-value=0.025  Score=51.05  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=23.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .|-+.++.|++||||||+..+|.--++
T Consensus        22 ~~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           22 KEGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            467999999999999999999876654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.44  E-value=0.024  Score=48.74  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=21.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.-|+|.|.||+||||+...|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457899999999999999999875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.41  E-value=0.023  Score=47.10  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .=|++.|.+|+||||+...|....
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            347899999999999999998764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.41  E-value=0.035  Score=55.97  Aligned_cols=42  Identities=10%  Similarity=0.102  Sum_probs=33.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+..+++|+|.||+||||++..++...-. ..+.++++++...
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~  239 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM  239 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC
Confidence            45679999999999999999999887521 2355788888764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.41  E-value=0.024  Score=48.10  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHh
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..|.+.|.||+||||+...|...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.36  E-value=0.02  Score=57.30  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=29.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      -+...++.|.|+|||||||+.+.|+.-..-   ..+-+.+++
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g   64 (372)
T 1g29_1           26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGD   64 (372)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETT
T ss_pred             EcCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECC
Confidence            356779999999999999999999976521   224455554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.34  E-value=0.024  Score=47.11  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .=|++.|.+|+||||+...|....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            458899999999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.33  E-value=0.029  Score=48.26  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+.-|+|.|.+|+||||+...|....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344578899999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.30  E-value=0.024  Score=47.13  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHh
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .=|++.|.+|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.28  E-value=0.023  Score=59.32  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=32.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++..++.+.|++||||||+++.|+..+.-   ..+.+.+++-+++
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~  408 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLR  408 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEcc
Confidence            45568999999999999999999987621   2355777765554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.23  E-value=0.026  Score=47.50  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|++.|.+|+||||+...|....
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            3458999999999999999998654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.23  E-value=0.025  Score=46.99  Aligned_cols=24  Identities=29%  Similarity=0.536  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .=|++.|.+|+||||+...|....
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            447899999999999999998653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.22  E-value=0.039  Score=46.90  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.-|+|.|.+|+||||+...|....
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCc
Confidence            345668999999999999999998763

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.19  E-value=0.025  Score=56.92  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=32.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -+...++.|.|++||||||+.+.|+.-+.    ..+-+.+++.++.
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~   85 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWD   85 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECC
Confidence            46778999999999999999999997652    2355777776554

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.19  E-value=0.026  Score=56.06  Aligned_cols=35  Identities=9%  Similarity=0.143  Sum_probs=27.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      .+.++++.|+||+||||++..++...|     ..+.+++.
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~  156 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATV  156 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEe
Confidence            456789999999999999999998742     35566665

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.18  E-value=0.027  Score=46.94  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|++.|.+|+||||+...+....
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4568999999999999999998663

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.17  E-value=0.016  Score=57.56  Aligned_cols=28  Identities=25%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -+...++.|.|+|||||||+.+.|+.-.
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3567899999999999999999999765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.14  E-value=0.03  Score=47.03  Aligned_cols=26  Identities=15%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.-|++.|.+|+||||+...|....
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            45568999999999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.14  E-value=0.029  Score=46.46  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .=|++.|.+|+||||+...|....
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            347899999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.14  E-value=0.033  Score=49.11  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+.-|++.|++|+||||++..|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344568899999999999999999865

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.09  E-value=0.027  Score=56.00  Aligned_cols=39  Identities=13%  Similarity=0.127  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ++++.|+||+||||++-.++....-...+..+++||+..
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            799999999999999998877652101145678898765

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.08  E-value=0.029  Score=47.05  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..-|+|.|.+|+||||+...|....
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568999999999999999998764

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.08  E-value=0.034  Score=58.42  Aligned_cols=45  Identities=24%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI  259 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~i  259 (400)
                      ..++++.|+||+||||++..++..+  ...+..+. +-+-+-+..+.+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l--~~~g~~Vl-~~ApT~~Aa~~L  248 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA--ESLGLEVG-LCAPTGKAARRL  248 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEE-EEESSHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEE-EecCcHHHHHHh
Confidence            4588999999999999999998876  23344444 444444433333

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.08  E-value=0.042  Score=45.82  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=22.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.-|++.|.+|+||||+...+....
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            345678999999999999999997653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.03  E-value=0.032  Score=46.25  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +.=|++.|.+|+||||+...|...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            446899999999999999999865

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.02  E-value=0.032  Score=55.11  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +-++++.|++||||||+...|.-.
T Consensus        23 ~g~~~i~G~NGaGKTTll~ai~~a   46 (365)
T 3qf7_A           23 SGITVVEGPNGAGKSSLFEAISFA   46 (365)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            348889999999999999998743

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.00  E-value=0.034  Score=47.76  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.-|++.|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4456888999999999999999865

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.97  E-value=0.032  Score=47.29  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|+|.|.+|+||||++..|....
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568999999999999999998753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=93.95  E-value=0.034  Score=53.98  Aligned_cols=28  Identities=29%  Similarity=0.392  Sum_probs=23.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      -.|-+.++.|+|||||||+..++.--+.
T Consensus        21 f~~~~~~i~G~NGsGKS~lleAi~~~l~   48 (339)
T 3qkt_A           21 FKEGINLIIGQNGSGKSSLLDAILVGLY   48 (339)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            3577999999999999999999865443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.91  E-value=0.032  Score=53.61  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..++.+.|+|||||||+.+.|+ ..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            4588999999999999999999 65

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.90  E-value=0.043  Score=46.13  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=21.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.=|+|.|.+|+||||+...|...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            3456899999999999999999865

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.88  E-value=0.033  Score=46.47  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      =|++.|.+|+||||+...+...
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3789999999999999999743

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=93.88  E-value=0.019  Score=60.01  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=33.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ++..++.+.|++||||||+++.|+..+.-   ..+.+.+++-+++.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~  407 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKD  407 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGG
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEhhh
Confidence            45668999999999999999999987631   23557787766653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.86  E-value=0.038  Score=46.23  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|+|.|.+|+||||+...|....
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCC
Confidence            3458999999999999999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.86  E-value=0.03  Score=46.55  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      =|++.|.+|+||||+...+...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            3789999999999999998643

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=93.83  E-value=0.041  Score=52.99  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=22.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+++.||||+|||+++..|+..+
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhh
Confidence            3479999999999999999999975

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.81  E-value=0.028  Score=48.59  Aligned_cols=22  Identities=41%  Similarity=0.761  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      -|+|.|.||+||||+...++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999873

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.80  E-value=0.035  Score=46.55  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .-|++.|.+|+||||+...|....
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            457888999999999999998653

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=93.78  E-value=0.024  Score=58.81  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      -+||.|+||+|||++|+.|+..++
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             eeEeecCchHHHHHHHHHHHHHHh
Confidence            468999999999999999999873

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.77  E-value=0.036  Score=46.77  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|+|.|.+|+||||+...|....
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Confidence            4568999999999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.76  E-value=0.046  Score=47.43  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+.=|+|.|.+|+||||+...|...-
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence            345668999999999999999998763

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=93.76  E-value=0.09  Score=51.80  Aligned_cols=41  Identities=12%  Similarity=0.081  Sum_probs=31.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCCc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA  252 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~----~~~~~avvIdaDe  252 (400)
                      .++.+.+|-.|+||||++..||..+--.    ..+..+++||.|-
T Consensus       109 ~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~  153 (398)
T 3ez2_A          109 YVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP  153 (398)
T ss_dssp             EEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence            3455666889999999999999877210    2367899999995

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.76  E-value=0.027  Score=59.19  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=32.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++..++.+.|++||||||+++.|+..+.-   ..+.+.+++-+++
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~  420 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIR  420 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGG
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhh
Confidence            45678999999999999999999987631   2355777776555

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.74  E-value=0.03  Score=58.80  Aligned_cols=43  Identities=23%  Similarity=0.210  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ++..++.+.|++||||||+++.|+..+.-   ..+.+.+++-+++.
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~~i~~  409 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDELDVRT  409 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSSBGGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCEEccc
Confidence            45668999999999999999999887631   24568888777664

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.73  E-value=0.035  Score=47.60  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.-|++.|.+|+||||++..|....
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCC
Confidence            34568899999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.70  E-value=0.036  Score=47.10  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|++.|.+|+||||+...|....
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568899999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.70  E-value=0.037  Score=46.70  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=21.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|++.|.+|+||||+...|....
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34468999999999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=93.69  E-value=0.03  Score=57.41  Aligned_cols=26  Identities=15%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...++.|.|++||||||+++.|+...
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            45678899999999999999999865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.66  E-value=0.041  Score=45.63  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |++.|.+|+||||+...+....
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999998654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.66  E-value=0.035  Score=46.58  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.=|+|.|.+|+||||+...|...
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3446899999999999999999764

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=93.66  E-value=0.11  Score=53.26  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+.++.|.|++|.||||+|.+++..
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence            34678999999999999999999753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.66  E-value=0.034  Score=47.43  Aligned_cols=23  Identities=22%  Similarity=0.383  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      -|+|.|.+|+||||+...|....
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            57788999999999999998763

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.65  E-value=0.04  Score=47.21  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|+|.|.+|+||||+...|....
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34568999999999999999998754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.63  E-value=0.037  Score=46.89  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|++.|.+|+||||+...|....
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC
Confidence            4458999999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.60  E-value=0.039  Score=57.62  Aligned_cols=28  Identities=36%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .++..++-|.|+|||||||+.+.|+..+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3567899999999999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.56  E-value=0.037  Score=57.66  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=24.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+..++.|.|+|||||||+.+.|+..+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567799999999999999999999865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.56  E-value=0.041  Score=46.36  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.-|+|.|.+|+||||+...|....
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC
Confidence            34568999999999999999998754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.56  E-value=0.038  Score=47.03  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |++.|.+|+||||+...+....
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            6789999999999999998764

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=93.52  E-value=0.052  Score=53.33  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      -....+++.|+||+||||+|.+|.++
T Consensus       145 ~~g~gvli~G~sG~GKStlal~l~~~  170 (312)
T 1knx_A          145 VFGVGVLLTGRSGIGKSECALDLINK  170 (312)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            35678999999999999999999875

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.52  E-value=0.07  Score=52.45  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ...-+++.|.+|+||||++.+|..+
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            4578999999999999999999886

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=93.50  E-value=0.042  Score=51.74  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+.+.++-.|+||||++..||..+  ...+..+.+||.|-
T Consensus         6 vI~v~s~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~   43 (286)
T 2xj4_A            6 VIVVGNEKGGAGKSTIAVHLVTAL--LYGGAKVAVIDLDL   43 (286)
T ss_dssp             EEEECCSSSCTTHHHHHHHHHHHH--HHTTCCEEEEECCT
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCC
Confidence            455666888999999999999988  45677899999998

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=93.48  E-value=0.044  Score=46.92  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+.-|+|.|.+|+||||+...|...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            45567899999999999999999865

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=93.47  E-value=0.11  Score=52.80  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.++.+.|+|||||||+.+.|+...
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            45689999999999999999999843

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.45  E-value=0.043  Score=47.26  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|+|.|.+|+||||+...|....
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.45  E-value=0.04  Score=55.02  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..++.+.|+|||||||+++.|+...
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCEEEEECCCCccHHHHHHHHhccc
Confidence            4588999999999999999999765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.42  E-value=0.036  Score=56.62  Aligned_cols=27  Identities=26%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             CCCEE--EEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVL--LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~l--ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.+  +.|.|+|||||||+.+.|+...
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            46667  8999999999999999998763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.42  E-value=0.039  Score=46.74  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=21.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~  234 (400)
                      +.+.-|++.|.+|+||||+...+..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567889999999999999999874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.41  E-value=0.056  Score=45.88  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...-|+|.|.+|+||||+...|....
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34468999999999999999998763

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=93.40  E-value=0.046  Score=46.17  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .=|++.|.+|+||||+...+....
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999998653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.36  E-value=0.048  Score=46.44  Aligned_cols=25  Identities=28%  Similarity=0.181  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..=|+|.|.+|+||||+.+.+...+
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3458999999999999998887665

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.30  E-value=0.046  Score=46.95  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|++.|.+|+||||+...|....
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34567899999999999999998764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.28  E-value=0.055  Score=49.64  Aligned_cols=28  Identities=29%  Similarity=0.523  Sum_probs=22.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+.-|+|.|.+||||||+...|...-
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456678999999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.27  E-value=0.068  Score=45.87  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+.=|++.|.+|+||||+...|...
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence            34566899999999999999999874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.23  E-value=0.05  Score=46.47  Aligned_cols=25  Identities=28%  Similarity=0.504  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.-|+|.|.+|+||||+...|....
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3568999999999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=93.22  E-value=0.053  Score=46.98  Aligned_cols=26  Identities=15%  Similarity=0.427  Sum_probs=22.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.-|+|.|.+|+||||+...|....
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            45568999999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.21  E-value=0.038  Score=52.93  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..++.+.|+|||||||+.+.|+...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccc
Confidence            4588999999999999999998765

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=93.16  E-value=0.08  Score=55.07  Aligned_cols=41  Identities=20%  Similarity=0.257  Sum_probs=34.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ...+++++|.+|+||||++..||..+  ...+..+.++|.|-.
T Consensus       326 ~~~~~~~~~~~g~Gktt~a~~lA~~l--~~~g~~vllvD~Dp~  366 (589)
T 1ihu_A          326 EHGLIMLMGKGGVGKTTMAAAIAVRL--ADMGFDVHLTTSDPA  366 (589)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESCCC
T ss_pred             CCeEEEEecCCCCChhhHHHHHHHHH--HHCCCcEEEEeCCCc
Confidence            45788999999999999999999887  445778999999943

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=93.14  E-value=0.062  Score=48.18  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+.-|+|.|.+|+||||++..|...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44567899999999999999999765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.12  E-value=0.063  Score=46.37  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|+|.|.+|+||||+...|....
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3458899999999999999998654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=93.11  E-value=0.052  Score=46.03  Aligned_cols=24  Identities=17%  Similarity=0.185  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +.-|++.|.+|+||||+...|...
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            456889999999999999999854

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=93.09  E-value=0.053  Score=46.63  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..=|+|.|.+|+||||+...|...-
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568999999999999999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=93.07  E-value=0.051  Score=49.29  Aligned_cols=27  Identities=30%  Similarity=0.441  Sum_probs=22.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+.-|+|.|.+|+||||+...|....
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence            345678999999999999999998765

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=93.07  E-value=0.083  Score=48.67  Aligned_cols=39  Identities=23%  Similarity=0.188  Sum_probs=27.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      ....+.++.|+|||||||-+-..+..+  ...+.+++++.+
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~--~~~~~kvl~~kp   56 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRF--QIAQYKCLVIKY   56 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEcc
Confidence            456899999999999996666555555  234567777753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.03  E-value=0.067  Score=46.07  Aligned_cols=26  Identities=38%  Similarity=0.479  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+.-|++.|.+|+||||+...+...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45567899999999999999999865

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=93.00  E-value=0.15  Score=49.39  Aligned_cols=25  Identities=32%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.-|+|.|.+|+||||++..|...
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~  188 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLG  188 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSS
T ss_pred             CcceEEEECCCCccHHHHHHHHhCC
Confidence            3456899999999999999998754

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=92.99  E-value=0.081  Score=49.65  Aligned_cols=38  Identities=26%  Similarity=0.233  Sum_probs=28.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      ....+.+++|++||||||.+-..+.++  ...+.+++++.
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~--~~~g~kvli~k   63 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRG--IYAKQKVVVFK   63 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH--HHcCCceEEEE
Confidence            467899999999999999666666666  33456777663

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.95  E-value=0.07  Score=45.54  Aligned_cols=27  Identities=41%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.-|++.|.+|+||||+...+....
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            456678999999999999999998653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.93  E-value=0.052  Score=47.11  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .=|+|.|.+|+||||+...|....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            458999999999999999998754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=92.92  E-value=0.088  Score=51.95  Aligned_cols=26  Identities=31%  Similarity=0.276  Sum_probs=24.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +...+.+.|+|||||||+.+.|+...
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56789999999999999999999987

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.92  E-value=0.057  Score=47.02  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ++.-|++.|.+|+||||+...+...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3446789999999999999999874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.89  E-value=0.06  Score=46.30  Aligned_cols=26  Identities=12%  Similarity=0.147  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|+|.|.+|+||||+...|....
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence            44568999999999999999998653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.87  E-value=0.056  Score=46.81  Aligned_cols=26  Identities=19%  Similarity=0.416  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|++.|.+|+||||+...|....
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34568999999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.85  E-value=0.079  Score=45.45  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +.+.-|+|.|.+|+||||+...|...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45667899999999999999999854

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.85  E-value=0.061  Score=46.45  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..=|+|.|.+|+||||+...|....
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            3458999999999999999998764

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=92.83  E-value=0.069  Score=63.90  Aligned_cols=43  Identities=12%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +++..+++.||||+||||+|..++...  ...+..+++++.+...
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEccccc
Confidence            468899999999999999999998876  2456789999987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=92.83  E-value=0.058  Score=47.07  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|+|.|.+|+||||+...|....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            4468899999999999999998653

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=92.83  E-value=0.059  Score=53.86  Aligned_cols=28  Identities=21%  Similarity=0.141  Sum_probs=24.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ..|.++++.|++||||||+...+.--++
T Consensus        24 ~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           24 GESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3467999999999999999999987654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=92.80  E-value=0.074  Score=44.86  Aligned_cols=26  Identities=15%  Similarity=0.174  Sum_probs=21.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|++.|.+|+||||+...+....
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568889999999999999998654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=92.79  E-value=0.062  Score=46.40  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|+|.|.+|+||||+...|....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3458999999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.74  E-value=0.052  Score=56.55  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +...++.|.|+|||||||+++.|+..+
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999999865

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.71  E-value=0.063  Score=46.85  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|+|.|.+|+||||++..|....
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34568999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.67  E-value=0.066  Score=46.45  Aligned_cols=26  Identities=15%  Similarity=0.346  Sum_probs=21.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...=|+|.|.+|+||||+...+....
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568999999999999999888764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.67  E-value=0.06  Score=57.18  Aligned_cols=27  Identities=37%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++..++-|.|+|||||||+.+.|+..+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            567799999999999999999999876

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.67  E-value=0.08  Score=46.09  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=22.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.=|+|.|.+|+||||++..|....
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            456678999999999999999998654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=92.66  E-value=0.069  Score=52.43  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~  234 (400)
                      ..|-+.+++|++||||||+..+|.-
T Consensus        23 f~~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           23 FEKGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999875

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=92.60  E-value=0.14  Score=52.24  Aligned_cols=84  Identities=17%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC--eEEEeCCccccchHHHHHHhcC-------CCCChhhHhHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN--AVVVEADAFKETDVIYRALSSK-------GHHDDMLQTAELVHQ  281 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~--avvIdaDefRe~D~irk~L~~~-------G~~~d~~~aa~~v~~  281 (400)
                      ..+-+.+.|+||+||||+++.|+....  ..+++  ++++-.|+-.+  .. ..+...       ...+++.    ..|-
T Consensus       173 rGQr~~IvG~sG~GKTtLl~~Iar~i~--~~~~~v~~I~~lIGER~~--Ev-~~~~~~~~~~vV~atadep~----~~r~  243 (422)
T 3ice_A          173 RGQRGLIVAPPKAGKTMLLQNIAQSIA--YNHPDCVLMVLLIDERPE--EV-TEMQRLVKGEVVASTFDEPA----SRHV  243 (422)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHHH--HHCTTSEEEEEEESSCHH--HH-HHHHTTCSSEEEEECTTSCH----HHHH
T ss_pred             CCcEEEEecCCCCChhHHHHHHHHHHh--hcCCCeeEEEEEecCChH--HH-HHHHHHhCeEEEEeCCCCCH----HHHH
Confidence            456788999999999999999987641  11123  34554443221  11 112111       0111111    1223


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEE
Q 015774          282 SSTDAASSLLVTALNEGRDVIM  303 (400)
Q Consensus       282 ~~~~~ae~lie~AL~eG~dVII  303 (400)
                      .+...+-.++++..++|+||+|
T Consensus       244 ~~a~~alt~AEyfrd~G~dVLi  265 (422)
T 3ice_A          244 QVAEMVIEKAKRLVEHKKDVII  265 (422)
T ss_dssp             HHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCEEE
Confidence            3334455577777789998875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.60  E-value=0.055  Score=57.36  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=24.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ....++.|.|+|||||||+++.|+..+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999999865

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.60  E-value=0.047  Score=52.51  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |-+.++.|++||||||+..+|.--+
T Consensus        24 ~g~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           24 DRVTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHh
Confidence            3499999999999999999998443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=92.55  E-value=0.07  Score=46.07  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=22.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.=|++.|.+|+||||+...+....
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            44568999999999999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=92.54  E-value=0.069  Score=46.24  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...=|+|.|.+|+||||+...+....
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence            34568999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=92.51  E-value=0.052  Score=45.90  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.=|+|.|.+|+||||+...+....
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3458999999999999999998763

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.48  E-value=0.064  Score=55.61  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=22.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .++.|.|++||||||+.+.|+.-+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            899999999999999999999865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.48  E-value=0.072  Score=45.96  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.+.-|+|.|.+|+||||+...|....
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCC
Confidence            344568999999999999999998654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.47  E-value=0.056  Score=57.29  Aligned_cols=27  Identities=22%  Similarity=0.339  Sum_probs=24.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ....++.|.|+|||||||+.+.|+..+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            566799999999999999999999865

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=92.42  E-value=0.088  Score=55.51  Aligned_cols=47  Identities=19%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL  263 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L  263 (400)
                      +.+|-||||+||||++..+...+-  ..+..+.+.. -+=...|.+.+.|
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~--~~~~~ILv~a-~TN~AvD~i~erL  253 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAV--KQGLKVLCCA-PSNIAVDNLVERL  253 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEE-SSHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEc-CchHHHHHHHHHH
Confidence            678999999999998888776652  2344544443 2222234444444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.40  E-value=0.052  Score=56.68  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +...++.|.|++||||||+++.|+..+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999999865

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=92.40  E-value=0.11  Score=54.77  Aligned_cols=49  Identities=22%  Similarity=0.246  Sum_probs=32.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS  264 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~  264 (400)
                      +.++.|+||+||||++..++..+-  ...+.-+++-+.+=+..|.+.+.+.
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l~--~~~~~~ilv~a~tn~A~~~l~~~l~  245 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHLA--RQGNGPVLVCAPSNIAVDQLTEKIH  245 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH--TSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEeCcHHHHHHHHHHHH
Confidence            678999999999999998877651  1122334554444444566666654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=92.37  E-value=0.16  Score=50.21  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+.|.|||||||+.+.|....
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58899999999999999998654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.36  E-value=0.065  Score=49.93  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .-|.+.|.|||||||+...|....
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            457899999999999999998653

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=92.35  E-value=0.03  Score=54.95  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .+. ++.|.|+|||||||+.+.|.--++
T Consensus        59 ~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           59 GGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             CSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            445 999999999999999999966553

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=92.33  E-value=0.046  Score=53.64  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=34.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ++.+.++-.|+||||++..||..+  ...+..+++||.|--..
T Consensus         3 vIav~s~KGGvGKTT~a~nLA~~L--A~~G~rVLlID~D~q~~   43 (361)
T 3pg5_A            3 TISFFNNKGGVGKTTLSTNVAHYF--ALQGKRVLYVDCDPQCN   43 (361)
T ss_dssp             EEEBCCSSCCHHHHHHHHHHHHHH--HHTTCCEEEEECCTTCT
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHH--HhCCCcEEEEEcCCCCC
Confidence            566778999999999999999888  45678999999997653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=92.31  E-value=0.061  Score=51.63  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHh
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .-|.|.|++||||||+.+.|...
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            34689999999999999998754

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=92.29  E-value=0.075  Score=52.77  Aligned_cols=37  Identities=30%  Similarity=0.513  Sum_probs=26.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      ..=+++.|++||||||++..+...+  ...+..++++|+
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li~~~--~~~g~~viv~Dp   89 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELAYTG--LLRGDRMVIVDP   89 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHH--HHTTCEEEEEEE
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEeC
Confidence            3457889999999999988776654  122456677764

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=92.28  E-value=0.063  Score=53.10  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=24.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ++..|.+-|+-||||||+++.|++.++
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            467999999999999999999999984

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.25  E-value=0.082  Score=46.36  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...-|+|.|.+|+||||+...|....
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468889999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=92.24  E-value=0.075  Score=46.55  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.=|+|.|.+|+||||+...|...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3456889999999999999999754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.24  E-value=0.098  Score=45.48  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.-|+|.|.+|+||||+...|....
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC
Confidence            45578999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	400
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	4e-05

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK 266
            +  SP   L+GG  G+GK+++   I +E+  +      +V++ D FK+    +  L   
Sbjct: 27  KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV-----IVIDNDTFKQQHPNFDELVKL 81

Query: 267 GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKS 326
              D      + V   S     +++    ++G +++++GT        QT  M +     
Sbjct: 82  YEKD----VVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYE 137

Query: 327 RY 328
             
Sbjct: 138 TK 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	400
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.43
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.22
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.19
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.18
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.0
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.98
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.98
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.91
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.9
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.87
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.85
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.78
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.74
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.74
d1okkd2	207	GTPase domain of the signal recognition particle r	98.69
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.65
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.64
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.61
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.61
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.55
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.52
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.51
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.48
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.44
d1vmaa1	81	Signal recognition particle receptor, FtsY {Thermo	98.44
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.41
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.4
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.39
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.38
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.36
d2qy9a1	84	Signal recognition particle receptor, FtsY {Escher	98.36
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.35
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.35
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.33
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.3
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.29
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.24
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.23
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.18
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.18
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.16
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.16
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.15
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.14
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.13
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.09
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.08
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.06
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.04
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.03
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.02
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.01
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.99
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.95
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.88
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.84
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.83
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.76
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.76
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.73
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.7
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.63
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.62
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.61
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.55
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.48
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.47
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.46
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.41
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.38
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.36
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.35
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.33
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.33
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.33
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.3
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.21
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.17
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.11
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.1
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.04
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.92
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.86
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.84
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.76
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.75
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.71
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.71
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.69
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.67
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.56
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.53
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.43
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.37
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.36
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.29
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.02
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.99
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.96
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.86
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.84
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.84
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.84
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.81
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.81
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.77
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.71
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.7
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.69
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.65
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.64
d1okkd1	58	Signal recognition particle receptor, FtsY {Thermu	95.61
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.53
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.53
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.52
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.48
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.44
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.44
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.44
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.38
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.38
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.38
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.34
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.26
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.17
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.16
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.15
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.14
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.12
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.11
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.1
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.1
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.07
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.06
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.0
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.99
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.92
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.84
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.81
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.73
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.7
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.69
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.67
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.66
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.62
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.58
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.56
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.48
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.45
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.42
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.4
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.4
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.36
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.34
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.34
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.33
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.3
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.16
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.15
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.11
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.05
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.92
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.88
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.79
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.78
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.74
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.65
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.63
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.6
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.6
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.59
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.54
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.54
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.45
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.43
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.42
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.41
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.35
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.35
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.31
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.3
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.25
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.14
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.09
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.09
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.01
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.99
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.98
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.96
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.92
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.9
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.88
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.83
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.78
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.76
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.76
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.7
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	92.69
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.66
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.59
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.58
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.56
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.52
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.46
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.37
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.33
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	92.29
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.2
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.2
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.18
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.15
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.05
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.04
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.03
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.87
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.82
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.74
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.73
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.72
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	91.71
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.71
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.71
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.68
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.68
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.68
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.67
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.53
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.26
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.16
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.13
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.02
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	90.98
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.97
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	90.66
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.63
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.58
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.31
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.26
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.23
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.96
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.86
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	89.52
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	89.47
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.19
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.96
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	88.34
d1tuea_	205	Replication protein E1 helicase domain {Human papi	88.25
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	87.69
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	87.45
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.23
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.47
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.83
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.76
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.56
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.3
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.93
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.57
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	84.38
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	84.38
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.1
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	84.06
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.78
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.63
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.64
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	82.61
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	82.46
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	82.15
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	81.91
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	81.9
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	81.76

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.7e-13  Score=120.66  Aligned_cols=80  Identities=28%  Similarity=0.351  Sum_probs=66.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      .+.|.+|+|+|+|||||||+|+.|+..++|       .+|+.|+++...                            ...
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~-------~~i~~D~~~~~~----------------------------~~~   55 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGY-------VHVNRDTLGSWQ----------------------------RCV   55 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTC-------EEEEHHHHCSHH----------------------------HHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCC-------EEEchHHHHHHH----------------------------HHH
Confidence            468999999999999999999999998855       899988876310                            112


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      ..+..++.+|.+||+|+|+.....+..++.++++.
T Consensus        56 ~~~~~~l~~g~~vIiD~t~~~~~~R~~~~~~a~~~   90 (172)
T d1yj5a2          56 SSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDA   90 (172)
T ss_dssp             HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCceeeCcCCCHHHHHHHHHHHHhc
Confidence            34556899999999999999999999999998763

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=3e-11  Score=104.98  Aligned_cols=104  Identities=13%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC-----ChhhHhHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-----DDMLQTAELVHQSSTD  285 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~-----~d~~~aa~~v~~~~~~  285 (400)
                      .|++|+|+|+|||||||+|++|++.++|  .+.++.++++|.+|      ..+.+....     ................
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~~l~~--~~~~~~~~~~D~~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTRYLNF--IGVPTREFNVGQYR------RDMVKTYKSFEFFLPDNEEGLKIRKQCALA   72 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHH------HHHHCSCCCGGGGCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh--cCCCCeEEccccee------hhhccccccccccccccccchhhHHHHHHH
Confidence            3899999999999999999999999976  35678899988766      444432110     0111111112122233


Q ss_pred             HHHHHHHHHHh-CCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          286 AASSLLVTALN-EGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       286 ~ae~lie~AL~-eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .....+..+.. .|..||+|+++.....+..+..+++.
T Consensus        73 ~~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~  110 (213)
T d1bifa1          73 ALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ  110 (213)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHh
Confidence            33444444443 56688999999999999998887765

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.19  E-value=4.3e-11  Score=107.90  Aligned_cols=127  Identities=22%  Similarity=0.352  Sum_probs=90.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          172 KDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       172 ~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      .+...+..+...++++.+    .           ......|..|||.|||||||||+|+.|+..++     .+.+.|++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~----~-----------~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~-----~~~~~i~~d   66 (273)
T d1gvnb_           7 TDKQFENRLNDNLEELIQ----G-----------KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDND   66 (273)
T ss_dssp             CHHHHHHHHHHHHHHHHT----T-----------CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECTH
T ss_pred             ChHHHHHHHHHHHHHHHh----c-----------ccCCCCCEEEEEECCCCCCHHHHHHHHHHHhh-----cceEEEecH
Confidence            455666666666665211    0           01256899999999999999999999999985     488999999


Q ss_pred             ccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          252 AFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       252 efRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      +|+..++.+..+...    .........+..........+..++..+.+.++|.|+........++..+..
T Consensus        67 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (273)
T d1gvnb_          67 TFKQQHPNFDELVKL----YEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQA  133 (273)
T ss_dssp             HHHTTSTTHHHHHHH----HGGGCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHT
T ss_pred             HHHHHhccCcccchh----hhHHHHHHHHhhccchHHHHHHHHHhhCCCCcccccccchHHHHHHHHHHHH
Confidence            998766555444331    1122333444444555666777888999999999999988888777777654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.18  E-value=4.7e-11  Score=99.32  Aligned_cols=95  Identities=17%  Similarity=0.176  Sum_probs=64.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCC---hhhHhHHHHHHHHHHHHH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD---DMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~---d~~~aa~~v~~~~~~~ae  288 (400)
                      +.+|+|+|+|||||||+|++|++..      .+..+++.|+++      +.+.......   ......    ........
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~------~~~~~~~~d~~~------~~~~~~~~~~~~~~~~~~~----~~~~~~~~   65 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYR------QSIMAHEERDEYKYTKKKE----GIVTGMQF   65 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS------TTEEEECHHHHH------HHHTTSCCGGGCCCCHHHH----HHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC------CCCEEechHHHH------HHHhcccchhhhhhhhhhh----HHHHHHHH
Confidence            4689999999999999999998775      367999988765      3443321110   011111    22223344


Q ss_pred             HHHHHHHhCC---CcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTALNEG---RDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL~eG---~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      .++..++..|   .++|+|+++..+..+.++..++++
T Consensus        66 ~~~~~~~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~  102 (152)
T d1ly1a_          66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE  102 (152)
T ss_dssp             HHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCCcccccccCCHHHHHHHHHhhhh
Confidence            4566666655   479999999999999999888876

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.00  E-value=4.6e-10  Score=94.48  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=57.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l  290 (400)
                      .+.+|+|.|+|||||||+++.|++++|+     ..+.++.|+++      ..+....... ...................
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~-----~~~~~~~d~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   70 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHSDDLW------GYIKHGRIDP-WLPQSHQQNRMIMQIAADV   70 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSS-----CEEEECTTHHH------HTCCSSCCCT-TSSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEecHHHHH------HHHhcCCccc-ccchhhhHHHHHHHHHHHH
Confidence            5789999999999999999999999975     77889988876      3332221100 0000011112223334446


Q ss_pred             HHHHHhCCCcEEEECcCC
Q 015774          291 LVTALNEGRDVIMDGTLS  308 (400)
Q Consensus       291 ie~AL~eG~dVIIDgT~~  308 (400)
                      +...+..+.+||+|++..
T Consensus        71 ~~~~~~~~~~vi~~~~~~   88 (176)
T d1zp6a1          71 AGRYAKEGYFVILDGVVR   88 (176)
T ss_dssp             HHHHHHTSCEEEECSCCC
T ss_pred             HHHHHhcCCCeEeccccc
Confidence            667788999999999875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.98  E-value=1e-09  Score=91.80  Aligned_cols=95  Identities=17%  Similarity=0.182  Sum_probs=56.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CC----CChhhHhHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GH----HDDMLQTAELVHQSSTD  285 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~----~~d~~~aa~~v~~~~~~  285 (400)
                      .+.+|+|+|+|||||||+|+.|++++++     ..++++.|.+.....  ...... ..    .+....... .......
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~-----~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   73 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPE-----PWLAFGVDSLIEAMP--LKMQSAEGGIEFDADGGVSIGP-EFRALEG   73 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSS-----CEEEEEHHHHHHHSC--GGGGTSTTSEEECTTSCEEECH-HHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC-----CeEEeecchhhcccc--ccccchhHHhhhhcccchhHHH-HHHHHHH
Confidence            3568999999999999999999999964     667788777652100  001110 00    000000000 0011222


Q ss_pred             HHHHHHHHHHhCCCcEEEECcCCChHHH
Q 015774          286 AASSLLVTALNEGRDVIMDGTLSWVPFV  313 (400)
Q Consensus       286 ~ae~lie~AL~eG~dVIIDgT~~~~~~r  313 (400)
                      .....+......+.++|++.++......
T Consensus        74 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~  101 (178)
T d1qhxa_          74 AWAEGVVAMARAGARIIIDDVFLGGAAA  101 (178)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCTTTHHH
T ss_pred             HHHHHHHHHHhhccceEEeeeecchHHH
Confidence            3334556677899999999998766543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.98  E-value=5.9e-10  Score=92.63  Aligned_cols=87  Identities=20%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV  292 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie  292 (400)
                      .+|+|+|+|||||||+|+.|++.++      ..+++++|.++.      .+.+. .... .. ....+..........+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~------~~~~~~~d~~~~------~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~   67 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD------NSAYIEGDIINH------MVVGG-YRPP-WE-SDELLALTWKNITDLTV   67 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS------SEEEEEHHHHHT------TCCTT-CCCG-GG-CHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC------CCEEEehHHHHH------HHhcc-ccch-hH-HHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999984      447888887763      22221 1111 11 11122233344555677


Q ss_pred             HHHhCCCcEEEECcCCChHHHH
Q 015774          293 TALNEGRDVIMDGTLSWVPFVE  314 (400)
Q Consensus       293 ~AL~eG~dVIIDgT~~~~~~re  314 (400)
                      ..+..+.++|+|++......+.
T Consensus        68 ~~~~~~~~~iid~~~~~~~~~~   89 (176)
T d2bdta1          68 NFLLAQNDVVLDYIAFPDEAEA   89 (176)
T ss_dssp             HHHHTTCEEEEESCCCHHHHHH
T ss_pred             HHHhcCCCcccccccccHHHHH
Confidence            7889999999999988655543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.9e-09  Score=98.71  Aligned_cols=108  Identities=17%  Similarity=0.297  Sum_probs=75.6

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc---C-CCC----ChhhHh
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS---K-GHH----DDMLQT  275 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~---~-G~~----~d~~~a  275 (400)
                      |+......|.+|+|+||+|+||||++.+||.++  ..++.++.+|.+|+||....  ++|..   . +.+    .+....
T Consensus         1 Pl~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~--~~~g~kV~lit~Dt~R~gA~--eQL~~~a~~l~v~~~~~~~~~d~   76 (211)
T d2qy9a2           1 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF--EQQGKSVMLAAGDTFRAAAV--EQLQVWGQRNNIPVIAQHTGADS   76 (211)
T ss_dssp             CCCCCSCTTEEEEEECCTTSCHHHHHHHHHHHH--HTTTCCEEEECCCTTCHHHH--HHHHHHHHHTTCCEECCSTTCCH
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEecccccccch--hhhhhhhhhcCCcccccccCCCH
Confidence            444446789999999999999999999999887  56678999999999995332  34411   1 111    111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          276 AELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       276 a~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                      .        ..+...++.+..+++++|+-+|.++.+.-...++..++.
T Consensus        77 ~--------~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l  116 (211)
T d2qy9a2          77 A--------SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI  116 (211)
T ss_dssp             H--------HHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred             H--------HHHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHH
Confidence            1        223334555777899999999999888777777766554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=5.4e-09  Score=87.74  Aligned_cols=93  Identities=10%  Similarity=0.087  Sum_probs=62.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ...|.+|+|+|+|||||||+++.|++++++       .+++.|+++.... ....... ... ....    +........
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~-------~~~~~d~~~~~~~-~~~~~~~-~~~-~~~~----~~~~~~~~~   68 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHA-------AFLDGDFLHPRRN-IEKMASG-EPL-NDDD----RKPWLQALN   68 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTC-------EEEEGGGGCCHHH-HHHHHTT-CCC-CHHH----HHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CeechhhhhHHHH-hhhhccC-cce-ehhh----hHHHHHHHH
Confidence            467899999999999999999999999965       8899999885322 2222221 110 0111    122233344


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHH
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQ  315 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~  315 (400)
                      ..+...+..+..++++.......+++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (171)
T d1knqa_          69 DAAFAMQRTNKVSLIVCSALKKHYRDL   95 (171)
T ss_dssp             HHHHHHHHHCSEEEEECCCCSHHHHHH
T ss_pred             HHHHHHHhccCceEeeccchHHHHHHH
Confidence            566677888999999988877665543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.87  E-value=3e-09  Score=95.94  Aligned_cols=98  Identities=10%  Similarity=0.111  Sum_probs=70.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA  287 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~a  287 (400)
                      ..+|.+|+|+|+|||||||+|+.|++.+.. ..+.+++++|+|.+|.      .+... +.. .     + ........+
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~-~~~~~~~~ldgD~iR~------~l~~~l~ys-~-----~-~r~~~~~r~   86 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDGDNIRF------GLNKDLGFS-E-----A-DRNENIRRI   86 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEECHHHHTT------TTTTTCCSS-H-----H-HHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHH-hcCceEEEEcchHHHH------hhcCCCCCC-h-----h-HHHHHHHHH
Confidence            578999999999999999999999987621 1134789999999983      33321 111 1     1 112233445


Q ss_pred             HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      ..++......|..||++.+......++.+.++.
T Consensus        87 ~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~  119 (208)
T d1m7ga_          87 AEVAKLFADSNSIAITSFISPYRKDRDTARQLH  119 (208)
T ss_dssp             HHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCceeeecccccHHHHHHHHHHh
Confidence            557777899999999999999988888776654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=3.3e-09  Score=95.24  Aligned_cols=92  Identities=9%  Similarity=0.079  Sum_probs=68.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ++.|||+.|++++.++..++.+..|++.|+......      ...........+..+++.||||+||||+|+.||+.++.
T Consensus         5 ~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~------~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2           5 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNS------FKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTT------TCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             ccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhh------hhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999887654311      00011111234457899999999999999999999964


Q ss_pred             cCCCCCeEEEeCCccccchHHHH
Q 015774          239 SGAATNAVVVEADAFKETDVIYR  261 (400)
Q Consensus       239 ~~~~~~avvIdaDefRe~D~irk  261 (400)
                           ++..++..+.+....++.
T Consensus        79 -----~~~~~~~~~~~~~~~~~~   96 (253)
T d1sxja2          79 -----DILEQNASDVRSKTLLNA   96 (253)
T ss_dssp             -----EEEEECTTSCCCHHHHHH
T ss_pred             -----hhhccccccchhhHHHHH
Confidence                 678888877775444443

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=9e-09  Score=87.97  Aligned_cols=100  Identities=11%  Similarity=0.064  Sum_probs=66.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      +.++.+|+|+|+|||||||+|+.|+++++++  ..+...++.|.++.      .... .........     ........
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~--~~~~~~~~~d~~~~------~~~~-~~~~~~~~~-----~~~~~~~~   81 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCH--GIPCYTLDGDNIRQ------GLNK-NLGFSPEDR-----EENVRRIA   81 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHHHHT--TCCEEEECHHHHTT------TTTT-TCCSSHHHH-----HHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCccchhHHhhhc------cccc-ccchhhhHH-----HHHHHHHH
Confidence            3468899999999999999999999999762  33455666665552      1111 011111111     11223344


Q ss_pred             HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      ..+....+.+..++++.+.........+..+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (195)
T d1x6va3          82 EVAKLFADAGLVCITSFISPYTQDRNNARQIHEG  115 (195)
T ss_dssp             HHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccccccccchHHHHHHHHHHHhc
Confidence            5677789999999999999988888777666554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=1.2e-08  Score=93.34  Aligned_cols=104  Identities=22%  Similarity=0.339  Sum_probs=70.0

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc---C-CC----CChhhHhHHHH
Q 015774          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS---K-GH----HDDMLQTAELV  279 (400)
Q Consensus       208 ~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~---~-G~----~~d~~~aa~~v  279 (400)
                      +...|.+|+|+||+|+||||++.+||.++  ..++..+.+|.+|+||....  ++|..   . +.    ..+....+.  
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~--~~~~~kV~lit~Dt~R~gA~--eQL~~~a~~l~i~~~~~~~~~d~~~--   80 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAADTFRAAAI--EQLKIWGERVGATVISHSEGADPAA--   80 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEECTTCHHHH--HHHHHHHHHHTCEEECCSTTCCHHH--
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCceEEEeecccccchh--HHHHHHhhhcCccccccCCCCcHHH--
Confidence            36789999999999999999999999987  45678899999999995332  33311   1 11    011111111  


Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774          280 HQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (400)
Q Consensus       280 ~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv  323 (400)
                            .+......+..+++++|+-+|.++.+.-.+.++..++.
T Consensus        81 ------~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~  118 (213)
T d1vmaa2          81 ------VAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKV  118 (213)
T ss_dssp             ------HHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHH
Confidence                  11223334667899999999988777666666655543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=1.2e-08  Score=91.29  Aligned_cols=72  Identities=21%  Similarity=0.207  Sum_probs=57.2

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC
Q 015774          162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA  241 (400)
Q Consensus       162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~  241 (400)
                      +||++|+++++++.+++.+..|++..+.-                  .+.+.-+|+.||||+||||+|+.|++++++   
T Consensus         3 ~RP~~~~divGqe~~~~~l~~~i~~~~~~------------------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~---   61 (238)
T d1in4a2           3 LRPKSLDEFIGQENVKKKLSLALEAAKMR------------------GEVLDHVLLAGPPGLGKTTLAHIIASELQT---   61 (238)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHH------------------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC---
T ss_pred             CCCCcHHHcCChHHHHHHHHHHHHHHHhc------------------CCCCCeEEEECCCCCcHHHHHHHHHhccCC---
Confidence            69999999999999999999999864331                  122224678999999999999999999975   


Q ss_pred             CCCeEEEeCCccccc
Q 015774          242 ATNAVVVEADAFKET  256 (400)
Q Consensus       242 ~~~avvIdaDefRe~  256 (400)
                        +...+++-+.+..
T Consensus        62 --~~~~~~~~~~~~~   74 (238)
T d1in4a2          62 --NIHVTSGPVLVKQ   74 (238)
T ss_dssp             --CEEEEETTTCCSH
T ss_pred             --CcccccCcccccH
Confidence              6677776555543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.69  E-value=2.2e-08  Score=91.01  Aligned_cols=102  Identities=16%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc---C-CCC----ChhhHhHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS---K-GHH----DDMLQTAELVH  280 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~---~-G~~----~d~~~aa~~v~  280 (400)
                      .++|.+|+|+|++|+||||++.+||..+  ...+..+.+|.+|++|....  ++|..   . +.+    ........   
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~--~~~g~kV~lit~Dt~R~gA~--eQL~~~a~~l~i~~~~~~~~~d~~~---   75 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYY--QNLGKKVMFCAGDTFRAAGG--TQLSEWGKRLSIPVIQGPEGTDPAA---   75 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEECCCCSSTTHH--HHHHHHHHHHTCCEECCCTTCCHHH---
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEeccccccch--hhHhhcccccCceEEeccCCccHHH---
Confidence            4578899999999999999999999987  56678899999999996443  33311   1 110    01111111   


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          281 QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       281 ~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                           .+......+..+++++|+-+|.++.++-...+...++
T Consensus        76 -----~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~  112 (207)
T d1okkd2          76 -----LAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKK  112 (207)
T ss_dssp             -----HHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHH
Confidence                 1222333355678999999999876665555554443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=1.5e-08  Score=90.74  Aligned_cols=71  Identities=25%  Similarity=0.264  Sum_probs=55.7

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774          161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG  240 (400)
Q Consensus       161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~  240 (400)
                      |+||++|+++++++.+++.+..|++..+.                  ....|.-+|+.||||+||||+|+.+++++++  
T Consensus         2 ~~RP~~~ddivGq~~~~~~L~~~i~~~~~------------------~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~--   61 (239)
T d1ixsb2           2 ALRPKTLDEYIGQERLKQKLRVYLEAAKA------------------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGV--   61 (239)
T ss_dssp             CCCCCSGGGSCSCHHHHHHHHHHHHHHTT------------------SSSCCCCEEEECCTTSCHHHHHHHHHHHHTC--
T ss_pred             CcCCCCHHHhCCHHHHHHHHHHHHHHHHh------------------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--
Confidence            46999999999999999999999875221                  0222334678999999999999999999965  


Q ss_pred             CCCCeEEEeCCccc
Q 015774          241 AATNAVVVEADAFK  254 (400)
Q Consensus       241 ~~~~avvIdaDefR  254 (400)
                         +...+++-++.
T Consensus        62 ---~~~~~~~~~~~   72 (239)
T d1ixsb2          62 ---NLRVTSGPAIE   72 (239)
T ss_dssp             ---CEEEEETTTCC
T ss_pred             ---CeEeccCCccc
Confidence               66777755544

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.64  E-value=5.6e-08  Score=84.24  Aligned_cols=38  Identities=29%  Similarity=0.563  Sum_probs=33.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ...|.+|++.|+|||||||+|+.|++.+|+       .+|+++++
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~-------~~i~~g~~   40 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGW-------VHLSAGDL   40 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCC-------EEEEHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCC-------ceEchhhH
Confidence            467999999999999999999999999976       89987654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.61  E-value=4.7e-08  Score=81.32  Aligned_cols=30  Identities=13%  Similarity=0.217  Sum_probs=27.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ..++.+|+|+|+|||||||+|++|++++++
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            467899999999999999999999999854

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.61  E-value=5.1e-08  Score=88.89  Aligned_cols=95  Identities=18%  Similarity=0.243  Sum_probs=59.7

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC----CCC----ChhhHh
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----GHH----DDMLQT  275 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~----G~~----~d~~~a  275 (400)
                      |+..+.+.|.+|+|.||+|+||||++.+||..+  ...+..+.+|.+|.+|....  ++|..-    |.+    .+....
T Consensus         4 ~~~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~--~~~g~kV~lit~Dt~R~ga~--eQL~~~a~~l~v~~~~~~~~~~~   79 (211)
T d1j8yf2           4 PKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFY--KKKGFKVGLVGADVYRPAAL--EQLQQLGQQIGVPVYGEPGEKDV   79 (211)
T ss_dssp             CCCSCSSSSEEEEEECSCCC----HHHHHHHHH--HHTTCCEEEEECCCSSHHHH--HHHHHHHHHHTCCEECCTTCCCH
T ss_pred             cccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCceEEEEeeccccchh--HHHHHhccccCcceeecccchhh
Confidence            344456789999999999999999999999987  55677899999999995333  333110    111    011111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCCh
Q 015774          276 AELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWV  310 (400)
Q Consensus       276 a~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~  310 (400)
                      .        ..+...+..+..++.++|+-+|.++.
T Consensus        80 ~--------~~~~~a~~~~~~~~~d~IlIDTaGr~  106 (211)
T d1j8yf2          80 V--------GIAKRGVEKFLSEKMEIIIVDTAGRH  106 (211)
T ss_dssp             H--------HHHHHHHHHHHHTTCSEEEEECCCSC
T ss_pred             h--------HHHHHHHHHhhccCCceEEEecCCcC
Confidence            1        12222444466788988888888764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.55  E-value=1.9e-08  Score=89.59  Aligned_cols=74  Identities=22%  Similarity=0.301  Sum_probs=55.9

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      -.+.|||++|++++++.+++..+..|++.                      .+.|. +++.||||+||||+|+.++++++
T Consensus        14 w~~ky~P~~~~diig~~~~~~~l~~~i~~----------------------~~~~~-lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          14 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT----------------------GSMPH-LLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHTCCCSTTTCCSCHHHHHHHHHHHHH----------------------TCCCE-EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCe-EEEECCCCCcHHHHHHHHHHHHH
Confidence            47999999999999999999999888876                      22343 67899999999999999999864


Q ss_pred             ccCCCCCeEEEeCCccc
Q 015774          238 WSGAATNAVVVEADAFK  254 (400)
Q Consensus       238 ~~~~~~~avvIdaDefR  254 (400)
                      ......+.+.+++-+.+
T Consensus        71 ~~~~~~~~~e~n~s~~~   87 (231)
T d1iqpa2          71 GENWRHNFLELNASDER   87 (231)
T ss_dssp             GGGHHHHEEEEETTCHH
T ss_pred             hcccCCCeeEEecCccc
Confidence            31111244566654443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.52  E-value=4.9e-08  Score=88.62  Aligned_cols=102  Identities=21%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc---C-CCC----ChhhHhHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS---K-GHH----DDMLQTAELVH  280 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~---~-G~~----~d~~~aa~~v~  280 (400)
                      .+.|.+|+|.|++|+||||++.+||..+  ...+.++.+|++|+||....  ++|..   . +.+    .+.....    
T Consensus         7 ~~~~~vi~lvGp~GvGKTTTiaKLA~~~--~~~g~kV~lit~Dt~R~gA~--eQL~~~a~~l~v~~~~~~~~~~~~----   78 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRPAAR--EQLRLLGEKVGVPVLEVMDGESPE----   78 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEECCSSCHHHH--HHHHHHHHHHTCCEEECCTTCCHH----
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEecccccchHH--HHHHHHHHhcCCccccccccchhh----
Confidence            3568899999999999999999999988  55678899999999996433  33311   1 111    0111111    


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          281 QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       281 ~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                          ..+......+..+++++|+-+|.++.+.-...+....+
T Consensus        79 ----~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~  116 (207)
T d1ls1a2          79 ----SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR  116 (207)
T ss_dssp             ----HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhhccCcceeecccccchhhhhhHHHHHH
Confidence                11111223355678888888888776665555555444

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=3e-07  Score=74.69  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|+|+|+|||||||+|+.||+++++       .+++.|.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~-------~~id~~~~~   37 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNM-------EFYDSDQEI   37 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTC-------EEEEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC-------CeEeechhH
Confidence            4777899999999999999999965       788876654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=4.3e-08  Score=87.20  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=55.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.|||++|++++++.++...+..|+++                      ...|. +++.||||+||||+|+.+++.++.
T Consensus         6 ~eKyrP~~~~d~ig~~~~~~~L~~~~~~----------------------~~~~~-~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2           6 VEKYRPQVLSDIVGNKETIDRLQQIAKD----------------------GNMPH-MIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             HHHTCCSSGGGCCSCTHHHHHHHHHHHS----------------------CCCCC-EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             HhHhCCCCHHHhcCCHHHHHHHHHHHHc----------------------CCCCe-EEEECCCCCCchhhHHHHHHHHhc
Confidence            5789999999999999988888887764                      23344 568999999999999999998753


Q ss_pred             cCCCCCeEEEeCCccc
Q 015774          239 SGAATNAVVVEADAFK  254 (400)
Q Consensus       239 ~~~~~~avvIdaDefR  254 (400)
                      +....+++.+++-+.+
T Consensus        63 ~~~~~~~~~~n~~~~~   78 (224)
T d1sxjb2          63 RSYADGVLELNASDDR   78 (224)
T ss_dssp             GGHHHHEEEECTTSCC
T ss_pred             cccccccccccccccC
Confidence            2122245666665555

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=5.4e-07  Score=78.12  Aligned_cols=34  Identities=29%  Similarity=0.462  Sum_probs=29.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ..+|+|.|+|||||||+|+.|++.+||       .+|++++
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g~-------~~is~gd   41 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYSF-------VHLSAGD   41 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSC-------EEEEHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC-------eEEehhH
Confidence            446777799999999999999999976       8999644

>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=1.3e-07  Score=74.04  Aligned_cols=63  Identities=16%  Similarity=0.207  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHH
Q 015774           82 LCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAA  161 (400)
Q Consensus        82 ~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      |.||..|+-||++.+..+|...|++.+    +|++++||||+              .||++|+|++++      ..|++.
T Consensus         4 f~klk~gL~KTr~~~~~~l~~lf~~~~----iDe~~leeLEe--------------~LI~aDvGv~tt------~~Ii~~   59 (81)
T d1vmaa1           4 FDFLKKGLQKTKETFFGRVVKLLKGKK----LDDETREELEE--------------LLIQADVGVETT------EYILER   59 (81)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHTTCC----CCHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC----CCHHHHHHHHH--------------HHHHccCCHHHH------HHHHHH
Confidence            689999999999999999999998876    99999999999              999999999999      999999


Q ss_pred             hhhhhhh
Q 015774          162 TRKQRFE  168 (400)
Q Consensus       162 ~r~~rf~  168 (400)
                      .|++.++
T Consensus        60 lr~~~~~   66 (81)
T d1vmaa1          60 LEEKDGD   66 (81)
T ss_dssp             HTTCCSC
T ss_pred             HHhhhcc
Confidence            9987654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.41  E-value=1.7e-07  Score=81.14  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=32.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .|..|++.|+|||||||+|+.|++.+||       .+|++|++.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~-------~~is~~~~~   38 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQL-------AHISAGDLL   38 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC-------EECCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCC-------cEEehhHHH
Confidence            5778999999999999999999999976       899976654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.2e-07  Score=83.92  Aligned_cols=56  Identities=21%  Similarity=0.402  Sum_probs=47.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .+.|||++|++++++++++..+..|++.                      .+.|. +++.||||+||||+++.++++++
T Consensus         5 ~ekyrP~~~~divg~~~~~~~L~~~i~~----------------------~~~~~-lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2           5 VEKYRPETLDEVYGQNEVITTVRKFVDE----------------------GKLPH-LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHTCCSSGGGCCSCHHHHHHHHHHHHT----------------------TCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hhhhCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCe-EEEECCCCCChhHHHHHHHHHhh
Confidence            5789999999999999999988888764                      22344 56899999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.39  E-value=4.3e-07  Score=78.92  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +.|.+|+|.|+|||||||+++.|++.+||       .+|+++++
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~-------~~is~g~l   42 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGY-------THLSTGDL   42 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCC-------EEEEHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCC-------eeEeccHH
Confidence            36778999999999999999999999977       89997664

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.7e-06  Score=73.12  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=31.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      |.+|+|.|+|||||||+|+.|++.+|+       .+|+++++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~-------~~i~~g~l   35 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGY-------THLSAGEL   35 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC-------ceEcHHHH
Confidence            789999999999999999999999976       88886543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=2.8e-07  Score=78.25  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .|.+||+ |+|||||||+++.||+++||       .++|.|.+
T Consensus         1 ~p~Ivli-G~~G~GKSTig~~La~~l~~-------~fiD~D~~   35 (165)
T d2iyva1           1 APKAVLV-GLPGSGKSTIGRRLAKALGV-------GLLDTDVA   35 (165)
T ss_dssp             CCSEEEE-CSTTSSHHHHHHHHHHHHTC-------CEEEHHHH
T ss_pred             CCcEEEE-CCCCCCHHHHHHHHHHHhCC-------CeEeeccc
Confidence            3777766 99999999999999999977       68898865

>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=3.5e-07  Score=71.63  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=63.9

Q ss_pred             HHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhh
Q 015774           87 YEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQR  166 (400)
Q Consensus        87 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~r  166 (400)
                      .|+.||++++..+|..+|++.+    +|++++||||+              .||++|+|++++      ..|++++|.+.
T Consensus         1 kgL~KTr~~~~~~i~~l~~~~~----id~~~leeLEe--------------~LI~aDvG~~tt------~~ii~~lk~~~   56 (84)
T d2qy9a1           1 RSLLKTKENLGSGFISLFRGKK----IDDDLFEELEE--------------QLLIADVGVETT------RKIITNLTEGA   56 (84)
T ss_dssp             HHTTTTTTTSTTHHHHHHTTCB----CSHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHCCCC----CCHHHHHHHHH--------------HHHHccCCHHHH------HHHHHHHHHHH
Confidence            4788999999999999998876    99999999999              999999999999      99999999876


Q ss_pred             hhhh-hhhhHHHHHHHHHHHH
Q 015774          167 FEKV-TKDLKMKRVFSTLVEE  186 (400)
Q Consensus       167 f~~v-~~~~~vkr~~~~liee  186 (400)
                      +.+- .....++..+...+.+
T Consensus        57 ~~~~~~~~~~l~~~L~~~i~~   77 (84)
T d2qy9a1          57 SRKQLRDAEALYGLLKEEMGE   77 (84)
T ss_dssp             HHTTCCBGGGHHHHHHHHHHH
T ss_pred             hhcCCCCHHHHHHHHHHHHHH
Confidence            5544 4555666666666665

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.35  E-value=2.2e-07  Score=77.61  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +++|..|+|+|+|||||||+++.|+++++      ...+++.|++.
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~------~~~~~~~~~~~   41 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELD------GFQHLEVGKLV   41 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHST------TEEEEEHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhC------CCcEEeHHHHH
Confidence            35678899999999999999999999984      34666655544

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.35  E-value=3.7e-07  Score=77.88  Aligned_cols=33  Identities=27%  Similarity=0.485  Sum_probs=29.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |+|.|+|||||||+++.||+++||       .++|+|.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~-------~~id~D~~i   37 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGY-------EFVDTDIFM   37 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-------CEEehhhhh
Confidence            456799999999999999999977       799998765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.33  E-value=9.3e-08  Score=79.55  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=27.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      |+|+|+|||||||+|+.|++++|+       .+++.|+.
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~~-------~~i~~~~~   38 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSGL-------KYINVGDL   38 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCC-------EEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC-------cEEechHH
Confidence            568899999999999999999966       68886654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.30  E-value=7.4e-07  Score=75.84  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=28.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |+|.|+|||||||+++.||+.+|+       .++|+|.+-
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~-------~~~d~d~~i   35 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDL-------VFLDSDFLI   35 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-------CEEecCchh
Confidence            566799999999999999999976       799988653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=1.2e-06  Score=75.33  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |++.|+|||||||+++.|++++|+       .+|++|++.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~-------~~i~~~d~~   37 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHA-------AHLATGDML   37 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-------ceEeccccc
Confidence            566799999999999999999976       899987654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=1.9e-07  Score=82.49  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      .+.|||++|++++.++.+++.+..|++.                      ...|. +++.||||+||||+++.+++++..
T Consensus         3 ~~ky~P~~~~diig~~~~~~~l~~~i~~----------------------~~~~~-lll~Gp~G~GKTtl~~~i~~~l~~   59 (237)
T d1sxjd2           3 VEKYRPKNLDEVTAQDHAVTVLKKTLKS----------------------ANLPH-MLFYGPPGTGKTSTILALTKELYG   59 (237)
T ss_dssp             HHHTCCSSTTTCCSCCTTHHHHHHHTTC----------------------TTCCC-EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             chhhCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCe-EEEECCCCCChHHHHHHHHHHHcC
Confidence            4789999999999998887777766643                      12333 689999999999999999998511


Q ss_pred             -cCCCCCeEEEeCCccc
Q 015774          239 -SGAATNAVVVEADAFK  254 (400)
Q Consensus       239 -~~~~~~avvIdaDefR  254 (400)
                       .........++....+
T Consensus        60 ~~~~~~~~~~~~~~~~~   76 (237)
T d1sxjd2          60 PDLMKSRILELNASDER   76 (237)
T ss_dssp             HHHHTTSEEEECSSSCC
T ss_pred             Ccccccchhheeccccc
Confidence             0011244556665555

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.23  E-value=1.9e-06  Score=71.63  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=30.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+|+|.|+|||||||+++.|++++++  .+.++.+++.++
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~--~~~~~~~~~~~~   39 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK--EGVNYKMVSFGS   39 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT--TTCCCEEEEHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEecCC
Confidence            48999999999999999999999854  455666666443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.18  E-value=2.6e-06  Score=73.27  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC-ccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD-AFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD-efR  254 (400)
                      .+| |.|+|||||||+++.||+++|+       .+|+++ .||
T Consensus         5 rii-l~G~pGSGKsT~a~~La~~~g~-------~~i~~gdllr   39 (190)
T d1ak2a1           5 RAV-LLGPPGAGKGTQAPKLAKNFCV-------CHLATGDMLR   39 (190)
T ss_dssp             EEE-EECCTTSSHHHHHHHHHHHHTC-------EEEEHHHHHH
T ss_pred             EEE-EECCCCCCHHHHHHHHHHHhCC-------eEEeHHHHHH
Confidence            445 5699999999999999999966       899974 444

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=3.3e-07  Score=79.45  Aligned_cols=34  Identities=24%  Similarity=0.573  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefR  254 (400)
                      +|.+.|||||||||+|+.|++++|+       .+|| +|-||
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl-------~~iStGdLlR   39 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQW-------HLLDSGAIYR   39 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC-------EEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEECHHHHHH
Confidence            8899999999999999999999976       8998 56666

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.16  E-value=3.5e-06  Score=73.66  Aligned_cols=34  Identities=24%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .-|+|.|+|||||||+++.|++++|+       .+|+++++
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g~-------~~is~gdl   40 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFEL-------KHLSSGDL   40 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBCC-------EEEEHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHCC-------eEEcHHHH
Confidence            34556699999999999999999966       89998554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.16  E-value=9.1e-07  Score=74.92  Aligned_cols=45  Identities=16%  Similarity=0.143  Sum_probs=36.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ...|.+|-++|++||||||+|+.|++.++.  .+..+..++.|.+..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~--~~~~~~~~~~~~~~~   63 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMDDHIV   63 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc--ccccceecccccccc
Confidence            457999999999999999999999998853  344667788777653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.15  E-value=3.1e-07  Score=78.00  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |+|.|+|||||||+++.|++.+|+       .+|+++++-
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~-------~~i~~~~ll   35 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGI-------PHISTGDMF   35 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCC-------CEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC-------ceechhHHH
Confidence            789999999999999999999976       799877654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1.1e-06  Score=79.35  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      -+.|||++|++++++..++..+..++..                      .+.|..+|+.|+||+||||+|+.+++.++.
T Consensus         3 ~~KyrP~~~~dlig~~~~~~~L~~~i~~----------------------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_           3 ARKWRPQTFADVVGQEHVLTALANGLSL----------------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             HHHTCCSSGGGSCSCHHHHHHHHHHHHT----------------------TCCCSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             hhhhCCCCHHHccChHHHHHHHHHHHHc----------------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            4689999999999999998888777754                      345778999999999999999999998753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=2.1e-07  Score=82.88  Aligned_cols=55  Identities=18%  Similarity=0.349  Sum_probs=43.5

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          160 AATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       160 ~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.|||++|++++.++.+++.+..++..                     ....| -+++.||||+||||+++.+++++
T Consensus         3 eky~P~~~~diig~~~~~~~L~~~~~~---------------------~~~~~-~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2           3 DKYRPKSLNALSHNEELTNFLKSLSDQ---------------------PRDLP-HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             TTTCCCSGGGCCSCHHHHHHHHTTTTC---------------------TTCCC-CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             cccCCCCHHHccCcHHHHHHHHHHHHc---------------------CCCCC-eEEEECCCCCCHHHHHHHHHHhh
Confidence            579999999999998877776655432                     01223 37899999999999999999986

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.09  E-value=1.2e-06  Score=72.51  Aligned_cols=35  Identities=14%  Similarity=0.057  Sum_probs=29.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      -+..|++.|+|||||||+|+.|++.++.       .+++.|.
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~-------~~i~~~~   40 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNT-------TSAWEYG   40 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTC-------EEECCTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCC-------CeEeeeh
Confidence            3678999999999999999999999954       6776443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.08  E-value=2e-06  Score=71.90  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      .+|++.|+|||||||+++.|++.++.  .+..+.+++.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~--~~~~~~~~~~   37 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN--QGINNKIINY   37 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT--TTCCEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEEEC
Confidence            48899999999999999999999954  3455666663

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=2.5e-06  Score=78.95  Aligned_cols=74  Identities=23%  Similarity=0.255  Sum_probs=54.2

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      -+|++|.+-+.++..+.++|.-++.         ......+  ..+.|.-+|+.||||+|||++|+.||+.+++     .
T Consensus         9 ~t~~Di~Gl~~~k~~l~e~v~~~~~---------~~~~~~~--g~~~~~~iLL~GppGtGKT~la~~iA~~~~~-----~   72 (256)
T d1lv7a_           9 TTFADVAGCDEAKEEVAELVEYLRE---------PSRFQKL--GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-----P   72 (256)
T ss_dssp             CCGGGSCSCHHHHHHTHHHHHHHHC---------GGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTC-----C
T ss_pred             CCHHHHhchHHHHHHHHHHHHHHHC---------HHHHHHc--CCCCCCeEEeeCCCCCCccHHHHHHHHHcCC-----C
Confidence            4689999999999888877754221         1111111  1356888999999999999999999999965     7


Q ss_pred             eEEEeCCccc
Q 015774          245 AVVVEADAFK  254 (400)
Q Consensus       245 avvIdaDefR  254 (400)
                      .+.|+..++.
T Consensus        73 ~~~i~~~~l~   82 (256)
T d1lv7a_          73 FFTISGSDFV   82 (256)
T ss_dssp             EEEECSCSST
T ss_pred             EEEEEhHHhh
Confidence            7888877765

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=2.6e-06  Score=78.37  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=52.0

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      .+|++|.+-++++..+.+.+.-++.      +..+.   .  ...+.|.-+|+.||||+|||++|+.|++++++     .
T Consensus         6 ~~~~di~G~~~~k~~l~~~i~~l~~------~~~~~---~--~g~~~~~giLl~GppGtGKT~la~aia~~~~~-----~   69 (247)
T d1ixza_           6 VTFKDVAGAEEAKEELKEIVEFLKN------PSRFH---E--MGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----P   69 (247)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHC------HHHHH---H--TTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----C
T ss_pred             CcHHHHccHHHHHHHHHHHHHHHHC------HHHHH---H--cCCCCCceEEEecCCCCChhHHHHHHHHHcCC-----C
Confidence            4899999999998888766643210      00000   0  01356778999999999999999999999976     6


Q ss_pred             eEEEeCCcc
Q 015774          245 AVVVEADAF  253 (400)
Q Consensus       245 avvIdaDef  253 (400)
                      ++.|++.++
T Consensus        70 ~~~i~~~~l   78 (247)
T d1ixza_          70 FITASGSDF   78 (247)
T ss_dssp             EEEEEHHHH
T ss_pred             EEEEEhHHh
Confidence            777876554

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=7.6e-07  Score=76.19  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      |++.|+|||||||+++.|++.+|+       .+|++|++.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g~-------~~i~~~~l~   35 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLGI-------PQISTGELF   35 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC-------ceEchHHHH
Confidence            778899999999999999999976       788876643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.02  E-value=7.9e-07  Score=76.32  Aligned_cols=33  Identities=21%  Similarity=0.192  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -|++.|+|||||||+|+.|++++|+       .+|+++++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~-------~~is~gdl   34 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGT-------PHISTGDM   34 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC-------CEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC-------ceeeHHHH
Confidence            4788999999999999999999966       78886543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.3e-06  Score=74.97  Aligned_cols=44  Identities=27%  Similarity=0.422  Sum_probs=36.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccC---CCCCeEEEeCCccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSG---AATNAVVVEADAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~---~~~~avvIdaDefR  254 (400)
                      +|.+|-++|++||||||+++.|++.++...   ...++.+|+.|+|.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy   47 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   47 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccc
Confidence            589999999999999999999999986421   22357899999984

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.99  E-value=1.4e-06  Score=76.14  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC-Cccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA-DAFK  254 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda-DefR  254 (400)
                      .+.+|.+.|||||||||+|+.||+++|+       .+||+ |-||
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~-------~~istGdl~R   39 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGF-------TYLDTGAMYR   39 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCC-------EEEEHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCC-------cEECHHHHHH
Confidence            3567889999999999999999999976       89984 4444

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.2e-06  Score=74.70  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -|+|.|+|||||||+++.|++.+|+       .+|+++++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~-------~~i~~~~ll   35 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGI-------PQISTGDML   35 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC-------CEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------ceechhhHh
Confidence            3678899999999999999999966       789876543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.9e-05  Score=69.01  Aligned_cols=92  Identities=18%  Similarity=0.255  Sum_probs=51.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCcccc-chHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKE-TDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe-~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae  288 (400)
                      ...+|.+.|+.||||||.++.|++.+  .+.+.+++++. +..-.. ...++..+...... ++.. -...+........
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L--~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~-~~~~-~~~l~~~~r~~~~   77 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEAL--CAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV-EDHS-VHLLFSANRWEQV   77 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCC-CHHH-HHHHHHHHHHTTH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEeCCCCCcccchhhhhhhhccccc-chhh-hhhHHHHHHHHHH
Confidence            45789999999999999999999988  34455666653 110000 01122222222111 1111 1111111111112


Q ss_pred             HHHHHHHhCCCcEEEECc
Q 015774          289 SLLVTALNEGRDVIMDGT  306 (400)
Q Consensus       289 ~lie~AL~eG~dVIIDgT  306 (400)
                      ..+..++.+|..||+|-.
T Consensus        78 ~~i~~~l~~g~~VI~DRy   95 (209)
T d1nn5a_          78 PLIKEKLSQGVTLVVDRY   95 (209)
T ss_dssp             HHHHHHHHTTCEEEEESC
T ss_pred             HhHHHHhhcccceeecch
Confidence            467889999999999964

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=4.9e-06  Score=68.72  Aligned_cols=39  Identities=21%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.++|+|||||||++..|++.+  ...+..+.++..|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l--~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL--CARGIRPGLIKHTHHD   42 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCC-
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEecccccc
Confidence            68899999999999999999987  3445566777666543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.83  E-value=3.6e-06  Score=72.48  Aligned_cols=37  Identities=30%  Similarity=0.503  Sum_probs=31.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.|.+|-++|++||||||+|..|. ++|+       .++++|.+.
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~-~~g~-------~~~~~D~~~   37 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLR-SWGY-------PVLDLDALA   37 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHH-HTTC-------CEEEHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCC-------eEEEccHHH
Confidence            479999999999999999999985 5655       688888764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2e-05  Score=72.09  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHH-HHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          166 RFEKVTKDLKMKRVFSTLVEE-MKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       166 rf~~v~~~~~vkr~~~~liee-~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      +|++|.+-+.++..+.+.|.- ++.         .......  ..+.|.-+|+.||||+|||++++.++..+++     .
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~~l~~---------~~~~~~~--g~~~~~giLL~GppGtGKT~l~~ala~~~~~-----~   65 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVELPLRH---------PALFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETGA-----F   65 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHHHHHC---------HHHHHHC--CCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----E
T ss_pred             ChhhhccHHHHHHHHHHHHHHHhcC---------HHHHHhC--CCCCCceeEEecCCCCCchHHHHHHHHHhCC-----e
Confidence            578888888888777776653 111         0011100  1346778999999999999999999999865     5


Q ss_pred             eEEEeC
Q 015774          245 AVVVEA  250 (400)
Q Consensus       245 avvIda  250 (400)
                      .+.+++
T Consensus        66 ~~~i~~   71 (258)
T d1e32a2          66 FFLING   71 (258)
T ss_dssp             EEEECH
T ss_pred             EEEEEc
Confidence            555653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=6.4e-05  Score=65.53  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=51.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE--eCCccccchHHHHHHhcCCC----CChhhHhHHHHHHHHHHH
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV--EADAFKETDVIYRALSSKGH----HDDMLQTAELVHQSSTDA  286 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI--daDefRe~D~irk~L~~~G~----~~d~~~aa~~v~~~~~~~  286 (400)
                      .+|.+-|++||||||+++.|++.+  ...+-..+++  .++.-.....+++.+.....    .-++..............
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L--~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETL--EQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL   80 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHH--HHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH--HhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            578899999999999999999987  2233333333  22211111233333322111    001111112222223444


Q ss_pred             HHHHHHHHHhCCCcEEEECc
Q 015774          287 ASSLLVTALNEGRDVIMDGT  306 (400)
Q Consensus       287 ae~lie~AL~eG~dVIIDgT  306 (400)
                      ...++..++.+|..||+|-.
T Consensus        81 ~~~~i~~~l~~~~~vi~DRy  100 (210)
T d4tmka_          81 VETVIKPALANGTWVIGDRH  100 (210)
T ss_dssp             HHHTHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHcCCcccccch
Confidence            55677889999999999954

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=1.5e-05  Score=76.03  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=39.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~  256 (400)
                      .+.|.+|-|+|++||||||+|+.|...+.-...+..+.+|+.|.|.-.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~  124 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP  124 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECC
Confidence            578999999999999999999999998731123567899999999743

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=4e-05  Score=72.33  Aligned_cols=56  Identities=21%  Similarity=0.282  Sum_probs=40.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhcccc-CCCCCeEEEeCCccccchHHHHHHh
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS-GAATNAVVVEADAFKETDVIYRALS  264 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~-~~~~~avvIdaDefRe~D~irk~L~  264 (400)
                      .+.|.+|-|+|++||||||++..|...+.-. ....++++|+.|+|.-....+..|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~   80 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN   80 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHh
Confidence            5689999999999999999998876654100 0123678899999975555555553

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.63  E-value=3e-05  Score=72.84  Aligned_cols=72  Identities=25%  Similarity=0.337  Sum_probs=48.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774          169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (400)
Q Consensus       169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI  248 (400)
                      +|.+.+.++++++..|-.  .+.+      -.+..+... ..+|.-+|+.||||+|||++|+.||+.++.     +.+.+
T Consensus        15 ~ViGQd~A~~~l~~av~~--~~~r------~~~~~~~~~-~~~~~~iLl~GPpG~GKT~lAkalA~~~~~-----~~~~i   80 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRN--RWRR------MQLQEPLRH-EVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKV   80 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHH--HHHT------TSSCHHHHH-HCCCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEE
T ss_pred             cccChHHHHHHHHHHHHH--HHHH------hccCCCCcc-CCCCceEEEECCCCCCHHHHHHHHhhcccc-----chhcc
Confidence            467777888877765531  1111      111122221 235678889999999999999999999853     77888


Q ss_pred             eCCccc
Q 015774          249 EADAFK  254 (400)
Q Consensus       249 daDefR  254 (400)
                      +.-+|.
T Consensus        81 ~~s~~~   86 (309)
T d1ofha_          81 EATKFT   86 (309)
T ss_dssp             EGGGGS
T ss_pred             cccccc
Confidence            877765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.6e-05  Score=65.40  Aligned_cols=36  Identities=14%  Similarity=0.217  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      .|+|+|+||+||||+++.++..+  ...+..+..+..+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l--~~~~~~v~~~~~~   38 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL--KSSGVPVDGFYTE   38 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH--HHTTCCCEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEec
Confidence            58999999999999999999988  3344455444433

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.7e-06  Score=77.38  Aligned_cols=85  Identities=24%  Similarity=0.307  Sum_probs=49.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc---c--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhH
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF---W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ  274 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg---~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~  274 (400)
                      ..+|+|+||+||||||+.+.|.+.+.   +              +.+|.++.+|+-++|.      +.+.. |.-   ..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~------~~i~~-g~f---lE   71 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK------EMISR-DAF---LE   71 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH------HHHHT-TCE---EE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHH------HHhhh-hhh---ee
Confidence            46899999999999999999998753   2              1234456666655554      23322 110   00


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcC
Q 015774          275 TAELVHQSSTDAASSLLVTALNEGRDVIMDGTL  307 (400)
Q Consensus       275 aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~  307 (400)
                      ++ .+|...+.....-+...+++|.++|+|...
T Consensus        72 ~~-~~~g~~YGt~~~~v~~~~~~g~~~ildid~  103 (205)
T d1s96a_          72 HA-EVFGNYYGTSREAIEQVLATGVDVFLDIDW  103 (205)
T ss_dssp             EE-EETTEEEEEEHHHHHHHHTTTCEEEEECCH
T ss_pred             EE-EECCceeccccchHHHHHhcCCceeecCcH
Confidence            00 000101111112345589999999999654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.55  E-value=0.00013  Score=63.71  Aligned_cols=45  Identities=13%  Similarity=0.114  Sum_probs=31.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ...|..+++.|+||+||||+++.|++.+.- ......+.++.....
T Consensus        40 ~~~~~~lll~GppGtGKT~l~~~l~~~l~~-~~~~~~~~~~~~~~~   84 (276)
T d1fnna2          40 GHHYPRATLLGRPGTGKTVTLRKLWELYKD-KTTARFVYINGFIYR   84 (276)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTT-SCCCEEEEEETTTCC
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHHHhc-ccCCcEEEecchhhh
Confidence            346678999999999999999999998831 112233445554444

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3e-06  Score=73.83  Aligned_cols=24  Identities=17%  Similarity=0.427  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+|+|+||+||||||+.+.|.+++
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            368889999999999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.47  E-value=0.00034  Score=63.57  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      .+|.-|||.||||+|||++|+.||+++++     ..+.++
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~~~-----~~~~i~   72 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEESNF-----PFIKIC   72 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTC-----SEEEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhcccc-----cccccc
Confidence            34567999999999999999999999865     556665

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.46  E-value=1.6e-05  Score=75.27  Aligned_cols=43  Identities=33%  Similarity=0.468  Sum_probs=33.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      +.| +|-++|++||||||+++.|.+.++  ..+.++++|+.|+|..
T Consensus         3 k~p-IIgIaG~SGSGKTTva~~l~~i~~--~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           3 KHP-IISVTGSSGAGTSTVKHTFDQIFR--REGVKAVSIEGDAFHR   45 (288)
T ss_dssp             TSC-EEEEESCC---CCTHHHHHHHHHH--HHTCCEEEEEGGGGBS
T ss_pred             CCC-EEEEECCCCCcHHHHHHHHHHHHh--hcCCCeEEEeCCCCCc
Confidence            456 899999999999999999998873  3345778999999974

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.41  E-value=5.2e-05  Score=63.68  Aligned_cols=38  Identities=13%  Similarity=0.143  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +|-++|.+||||||++..|+.++  +..+..+.+|..|..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L--~~~g~~v~vik~d~~   40 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAA--VREGWRVGTVKHHGH   40 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEECCC-
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH--HhCCCeEEEEEeccC
Confidence            78899999999999999999988  556667777765543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00028  Score=60.43  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=28.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      .+|.+.|..||||||+++.|++.+  ...|.+++++.
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l--~~~g~~v~~~~   35 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAF--RAAGRSVATLA   35 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEe
Confidence            378999999999999999999987  33455666653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=1.9e-05  Score=72.72  Aligned_cols=74  Identities=20%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774          165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN  244 (400)
Q Consensus       165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~  244 (400)
                      .+|++|.+-++++..+.+.+.-...  .      .....  ......|.-|||.|+||+|||++++.+|..+++     +
T Consensus         4 ~~f~di~G~~~~k~~l~~~i~~~l~--~------~~~~~--~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~-----~   68 (265)
T d1r7ra3           4 VTWEDIGGLEDVKRELQELVQYPVE--H------PDKFL--KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----N   68 (265)
T ss_dssp             CSCSSCSSSSCCCCHHHHHTHHHHH--C------HHHHH--HCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC-----E
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhh--C------HHHHH--hCCCCCCCeEEEECCCCCcchhHHHHHHHHhCC-----c
Confidence            3677777777776666666543110  0      00000  001345778999999999999999999999965     5


Q ss_pred             eEEEeCCcc
Q 015774          245 AVVVEADAF  253 (400)
Q Consensus       245 avvIdaDef  253 (400)
                      .+.++..++
T Consensus        69 ~~~~~~~~l   77 (265)
T d1r7ra3          69 FISIKGPEL   77 (265)
T ss_dssp             EEEECHHHH
T ss_pred             EEEEEHHHh
Confidence            666764443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.35  E-value=4.3e-05  Score=63.75  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      |+++|+|||||||+++.++..++.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999998854

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.0005  Score=60.72  Aligned_cols=26  Identities=27%  Similarity=0.264  Sum_probs=24.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.+|.+-|+-||||||+++.|++.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            46799999999999999999999998

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5.1e-05  Score=66.76  Aligned_cols=35  Identities=31%  Similarity=0.491  Sum_probs=28.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +.+|-|+|++||||||+++.|. .+|+       .++|+|.+.
T Consensus         3 k~iIgitG~igSGKStv~~~l~-~~G~-------~vidaD~i~   37 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFA-DLGI-------NVIDADIIA   37 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH-HTTC-------EEEEHHHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHH-HCCC-------cEEEchHHH
Confidence            3588899999999999999876 5655       899977654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.33  E-value=0.0001  Score=64.13  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=28.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      .+|++.|++||||||+...|.+.+.   .+..+.+|+.|
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~---~~~~~~ivn~d   36 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLD   36 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh---hCCeEEEEecC
Confidence            4799999999999999999998762   35567777644

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.30  E-value=4.9e-05  Score=67.31  Aligned_cols=35  Identities=29%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefR  254 (400)
                      .+|-|+|++||||||+|+.|++.+|+       .+++ +|.++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~-------~~i~~aD~i~   37 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSA-------VKYQLAGPIK   37 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCE-------EECCTTHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCC-------eEEcccHHHH
Confidence            47899999999999999999999854       8998 67665

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.21  E-value=6.6e-05  Score=64.14  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=26.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..+|.+|.+.|+.||||||+++.|++.+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999999998

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.17  E-value=8.1e-05  Score=65.19  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=27.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      .+|-++|++||||||+++.|. .+|+       .++|+|.+
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~-------~vidaD~i   35 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGV-------PLVDADVV   35 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTC-------CEEEHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCC-------eEEEchHH
Confidence            578899999999999999886 5654       78997764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00068  Score=63.66  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=49.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774          168 EKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV  247 (400)
Q Consensus       168 ~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv  247 (400)
                      ++|.+.+.++..++.-|-....          .+    ..+.++...++++||||+|||.+|+.||+.++     .+.+.
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~----------~l----~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~   82 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARA----------GL----GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLR   82 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHT----------TC----SCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEE
T ss_pred             CeecChHHHHHHHHHHHHHHHc----------cC----CCCCCCceEEEEECCCcchhHHHHHHHHhhcc-----CCeeE
Confidence            5678888888888776653211          11    11122333788999999999999999999985     36788


Q ss_pred             EeCCccccc
Q 015774          248 VEADAFKET  256 (400)
Q Consensus       248 IdaDefRe~  256 (400)
                      +|.-+|.+.
T Consensus        83 ~d~s~~~~~   91 (315)
T d1r6bx3          83 FDMSEYMER   91 (315)
T ss_dssp             EEGGGCSSS
T ss_pred             eccccccch
Confidence            887777643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00013  Score=62.23  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=22.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+|+|+|||||||||+++.|.+++
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            589999999999999999999886

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.04  E-value=0.00039  Score=67.02  Aligned_cols=41  Identities=17%  Similarity=0.142  Sum_probs=33.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      .+.+..+++.||||+||||+|..|++.+|+     +++.+++-+.+
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~-----~~i~in~s~~r  191 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCGG-----KALNVNLPLDR  191 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCC-----EEECCSSCTTT
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEECcchh
Confidence            355669999999999999999999999964     55556666665

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00033  Score=62.91  Aligned_cols=41  Identities=20%  Similarity=0.330  Sum_probs=36.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD  251 (400)
                      +..|.+|+++|--|+||||++..||..+  .+.|..+.+||+|
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~l--A~~G~rVLlvD~D   45 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRL--AEQGKRVLLVSTD   45 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEECC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHH--HHCCCCEEEEeCC
Confidence            4568899999999999999999999988  6677899999999

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00063  Score=64.71  Aligned_cols=43  Identities=26%  Similarity=0.201  Sum_probs=34.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ..+...|=|+|+|||||||+...|...+  .+.+..+-++..|--
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~--~~~g~~vavlavDps   93 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLL--IREGLKVAVIAVDPS   93 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCC
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHH--HhcCCceeeecCCCc
Confidence            4568899999999999999999999877  445556666666644

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.84  E-value=0.00065  Score=64.49  Aligned_cols=43  Identities=21%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ......|=++|+|||||||+...|...+  ...+.++-+|..|--
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~--~~~g~~vaViavDps   90 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLL--TAAGHKVAVLAVDPS   90 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECGG
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHH--hhcCCceeeeecccc
Confidence            4567899999999999999999999875  344556666655543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.76  E-value=0.00055  Score=59.82  Aligned_cols=42  Identities=14%  Similarity=0.328  Sum_probs=35.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ++..++++.|+||+||||++..++...  ..++..+.+++.++-
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~--~~~~~~~~~is~e~~   65 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENA--CANKERAILFAYEES   65 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEESSSC
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH--HHhccccceeeccCC
Confidence            467799999999999999999999986  345667889987754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.75  E-value=0.00022  Score=62.55  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.++++.|+||+||||+++.+++.+
T Consensus        46 ~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          46 NMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             ceEEEeECCCCCCHHHHHHHHHHHH
Confidence            3467788999999999999999986

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.71  E-value=0.0025  Score=61.16  Aligned_cols=42  Identities=24%  Similarity=0.311  Sum_probs=33.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ..+|.-|||.||+|+|||.+|+.||+.++     .+.+.+|.-.|-+
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~-----~~~ir~D~s~~~e  106 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHLD-----IPIAISDATSLTE  106 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGCC-
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhcc-----cceeehhhhhccc
Confidence            34666799999999999999999999873     3667788777764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00038  Score=59.84  Aligned_cols=22  Identities=41%  Similarity=0.727  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|+|||||||||+++.|++++
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999999886

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00039  Score=60.12  Aligned_cols=23  Identities=43%  Similarity=0.723  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      |+|.|||||||||+++.|++.++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.0015  Score=64.50  Aligned_cols=40  Identities=33%  Similarity=0.438  Sum_probs=33.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .|.=|||.||||+|||.+|+.||+.++.     +.+.+|+-.|-+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fTe   87 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFTE   87 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC-
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeecceeee
Confidence            3556899999999999999999999853     678888888875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0011  Score=58.12  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=26.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .+-|..+++.|+||+||||+|..+++.+.
T Consensus        21 ~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          21 GRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            46788999999999999999999999873

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00069  Score=59.37  Aligned_cols=27  Identities=33%  Similarity=0.405  Sum_probs=25.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .|.+|.+-|+-||||||+++.|++.+.
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            389999999999999999999999983

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.0016  Score=61.26  Aligned_cols=71  Identities=17%  Similarity=0.347  Sum_probs=45.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeE
Q 015774          168 EKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV  246 (400)
Q Consensus       168 ~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~av  246 (400)
                      ++|.+.+.+...+..-+.....          .+    . ....|. +++++||||+|||.+|+.||+.+.  +...+.+
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~----------~l----~-~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~--~~~~~~~   85 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARA----------GL----K-DPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMI   85 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGG----------GC----S-CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEE
T ss_pred             CeEeCHHHHHHHHHHHHHHHhc----------CC----C-CCCCCceEEEEECCCcchHHHHHHHHHHHhc--CCCcceE
Confidence            4566666666666655543211          11    1 123444 789999999999999999999872  2234567


Q ss_pred             EEeCCcccc
Q 015774          247 VVEADAFKE  255 (400)
Q Consensus       247 vIdaDefRe  255 (400)
                      .++.-+|-.
T Consensus        86 ~~~~~~~~~   94 (315)
T d1qvra3          86 RIDMTEYME   94 (315)
T ss_dssp             EECTTTCCS
T ss_pred             EEecccccc
Confidence            787666654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0011  Score=59.39  Aligned_cols=42  Identities=19%  Similarity=0.275  Sum_probs=36.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .....||+++|-=|+||||++-.||..+  ...|..+++||.|-
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~l--A~~G~rVllvD~Dp   58 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRL--ADMGFDVHLTTSDP   58 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESCC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEeCCC
Confidence            4567899999999999999999998887  55678999999994

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00086  Score=55.17  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=23.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +...+++++|+||+||||++..++...
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999998764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.0028  Score=54.63  Aligned_cols=29  Identities=21%  Similarity=0.524  Sum_probs=27.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      +++.+|+|.|.-||||||+++.+++.+|+
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            46789999999999999999999999987

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.02  E-value=0.0026  Score=55.01  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=26.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      .+++|.|++|+||||+++.+++..+.     ....++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~-----~~~~i~~   62 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDL   62 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEG
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCC-----CeEEEEe
Confidence            47889999999999999999998843     4455543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.99  E-value=0.0014  Score=59.59  Aligned_cols=51  Identities=16%  Similarity=0.193  Sum_probs=38.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHH
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRA  262 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~  262 (400)
                      -++..++-+.|++||||||+.+.|+.-+.   -..+-+.+++-++....+.++.
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r~   73 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKHD   73 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHHT
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHhc
Confidence            36778999999999999999999998762   1345688888777655554443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0016  Score=59.47  Aligned_cols=44  Identities=20%  Similarity=0.223  Sum_probs=35.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      -++...+.+.|++||||||+++.|...+..   ..+.+.|++-++..
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~   69 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLAL   69 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcCCC---CCCEEEECCEEecc
Confidence            356789999999999999999999987632   34668888766664

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.86  E-value=0.0022  Score=55.52  Aligned_cols=44  Identities=11%  Similarity=0.237  Sum_probs=31.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccc----cCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW----SGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~----~~~~~~avvIdaDef  253 (400)
                      +...+++|.|+|||||||++-.++...-.    ...+..++.++...-
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT   81 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccch
Confidence            56789999999999999999999876411    011345566665443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.84  E-value=0.0041  Score=55.47  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=33.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .+..+++++|+||+||||++..++...- ...+.++.+++.+.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a-~~~g~~v~~~s~E~   74 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEE   74 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhh-hhcccceeEeeecc
Confidence            4668999999999999999999986531 13456888888764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0023  Score=58.55  Aligned_cols=45  Identities=18%  Similarity=0.197  Sum_probs=35.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~  256 (400)
                      -++..++.+.|++||||||+++.|..-+.   -..+.+.|++-++...
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~   81 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQY   81 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGB
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchh
Confidence            46778999999999999999999998762   1235688887766643

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.84  E-value=0.0029  Score=57.55  Aligned_cols=43  Identities=14%  Similarity=0.286  Sum_probs=32.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -++...+.+.|++||||||+++.|+.-+.-   ..+-+.+++-++.
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~   67 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPID   67 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEEST
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhhCC---CCCEEEECCEEec
Confidence            467889999999999999999999887631   2355777655444

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0045  Score=51.34  Aligned_cols=45  Identities=7%  Similarity=0.208  Sum_probs=35.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhcccc-CCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS-GAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~-~~~~~avvIdaDefR  254 (400)
                      .++.-.|++.|.+||||||+|.+|...+. + +-+..+..++.|.++
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~-q~~G~R~vtll~~~ni~   48 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFL-QFGGGRYYKIFEHNNKT   48 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHT-TSCSCCCEEECCCTTCH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHH-HhcCCcceEEecCCCHH
Confidence            35778999999999999999999988872 1 124567788888655

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0032  Score=55.92  Aligned_cols=32  Identities=38%  Similarity=0.641  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      +++++|..||||||+.+.+.+..    .+.++.+|-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~----~~~riaVI~   36 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ----HGYKIAVIE   36 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC----CCCCEEEEC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC----CCCcEEEEE
Confidence            68999999999999999998864    134555554

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0017  Score=55.48  Aligned_cols=45  Identities=11%  Similarity=0.180  Sum_probs=31.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccc----cCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW----SGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~----~~~~~~avvIdaDefR  254 (400)
                      +...+++++|+|||||||++..++...-+    ...+..++.++...-.
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~   80 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF   80 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCC
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchH
Confidence            45679999999999999999998765311    1123356777766543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0036  Score=52.83  Aligned_cols=38  Identities=13%  Similarity=0.146  Sum_probs=32.6

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          213 VLLLMGGG-MGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       213 ~lILL~G~-PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +-++++|- +|+||||++--|+..+  .+.|..+.++++|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL--a~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA--KAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH--HHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEECccc
Confidence            35789999 5999999999999998  66788999999774

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0035  Score=53.93  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=23.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +...+++++|+||+||||++..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            57789999999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.69  E-value=0.0028  Score=57.99  Aligned_cols=44  Identities=18%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      -++...+.+.|++||||||+++.|+.-+.-   ..+-+.+++-+++.
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~   81 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLRE   81 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcccCC---CccEEEECCcccch
Confidence            467789999999999999999999876621   23557777766654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0017  Score=56.26  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=22.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+|.+-|+.||||||+++.|++.+
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999988

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0041  Score=56.47  Aligned_cols=44  Identities=18%  Similarity=0.283  Sum_probs=33.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      -++..++-+.|++||||||+.+.++.-..   -..+-+.+++.++..
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~   66 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMND   66 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCC
Confidence            35778999999999999999999987652   234557777766543

>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.61  E-value=0.0037  Score=45.46  Aligned_cols=33  Identities=12%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhh
Q 015774          113 LYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQ  165 (400)
Q Consensus       113 l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~  165 (400)
                      ++++++||||+              .||++|+|++++      ..|++.+|.+
T Consensus         7 ~~d~~leeLEe--------------~Li~ADvGv~tt------~~ii~~Lr~~   39 (58)
T d1okkd1           7 NLEEVLEELEM--------------ALLAADVGLSAT------EEILQEVRAS   39 (58)
T ss_dssp             CHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHTT
T ss_pred             CcHHHHHHHHH--------------HHHHcccCHHHH------HHHHHHHHHH
Confidence            67899999999              999999999999      8899999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.53  E-value=0.0038  Score=53.03  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=24.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +...+++|.|+||+||||++..++...
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.53  E-value=0.0036  Score=50.07  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |++.|.||+||||+...|...-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999998654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.52  E-value=0.005  Score=58.47  Aligned_cols=38  Identities=11%  Similarity=0.089  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++|+.|+||+|||.+|+.||.+.+-   ..+.+.|++.++-
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~---~~~~~~~~~~~~~  162 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGG---KDKYATVRFGEPL  162 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHT---TSCCEEEEBSCSS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcC---CCCeEEEEhhHhh
Confidence            4566899999999999999999752   1244667766665

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.48  E-value=0.0029  Score=58.69  Aligned_cols=48  Identities=23%  Similarity=0.235  Sum_probs=34.1

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      =|..|++.+.+|+.+.-.     ++.                  ....=+||.|+||+||||+|+.++.-+
T Consensus         5 ~f~~I~Gq~~~kral~la-----a~~------------------~~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLT-----AVD------------------PGIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHH-----HHC------------------GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             ChhhccCcHHHHHHHHHH-----Hhc------------------cCCCeEEEECCCCccHHHHHHHHHHhC
Confidence            377888988888754311     110                  011236999999999999999999876

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.44  E-value=0.0031  Score=55.82  Aligned_cols=38  Identities=24%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      ++|.|+||+|||.++.++++++  ...+..++.++..++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~--~~~~~~~~~~~~~~~~   76 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSADDFA   76 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh--ccCccceEEechHHHH
Confidence            6899999999999999999987  3445677888877665

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.44  E-value=0.0038  Score=52.90  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +...++++.|+||+|||+++..++..... ..+..+.+++.++-.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~~~~~-~~~~~~~~~s~e~~~   67 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLYNGII-EFDEPGVFVTFEETP   67 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSCH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHH-hcCCCcccccccCCH
Confidence            56789999999999999999887643211 112356777776543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.44  E-value=0.0023  Score=56.33  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       208 ~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .-++..++.+.|++||||||+.+.|+..+.  . ..+-+.+++-.
T Consensus        23 ~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p-~~G~I~~~g~~   64 (200)
T d1sgwa_          23 TIEKGNVVNFHGPNGIGKTTLLKTISTYLK--P-LKGEIIYNGVP   64 (200)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSSC--C-SEEEEEETTEE
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccc--c-CCCEEEECCEe
Confidence            346778999999999999999999998762  1 23446666533

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.38  E-value=0.0045  Score=56.17  Aligned_cols=44  Identities=18%  Similarity=0.220  Sum_probs=34.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      -++..++-+.|++||||||+.+.|+.-+.-   ..+-+.+++.++..
T Consensus        29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p---~~G~I~~~G~~i~~   72 (240)
T d1ji0a_          29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITN   72 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTT
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEeccccccc
Confidence            356789999999999999999999987631   34557788777653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.38  E-value=0.0024  Score=58.63  Aligned_cols=45  Identities=20%  Similarity=0.229  Sum_probs=35.1

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       208 ~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .-++...+.+.|++||||||+++.|+..+..   ..+.+.++.-+++.
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~   84 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKD   84 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGG
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHhcCCc---cccccccCCEEccc
Confidence            3467789999999999999999999887632   34568887766664

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.34  E-value=0.0062  Score=53.16  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ...-+++.|+||+||||++-+|.++ |+
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~   39 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GH   39 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TC
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CC
Confidence            4567999999999999999999887 54

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.26  E-value=0.0075  Score=51.77  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      +|.+.+|-.|+||||++..||..+  ...+.++.+||.|-..
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~l--a~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVAL--AQLGHDVTIVDADITM   42 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH--HHTTCCEEEEECCCSS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH--HhCCCCEEEEeCCCCC
Confidence            466778999999999999999888  5567799999999654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0053  Score=48.66  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.||+||||+...|....
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.16  E-value=0.0065  Score=58.64  Aligned_cols=95  Identities=22%  Similarity=0.242  Sum_probs=54.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l  290 (400)
                      +-=+|+++|++||||||+...+...+.  ....+++-|+       ||+--.+.+.....-......    .    -...
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~--~~~~~i~tiE-------dPiE~~~~~~~q~~v~~~~~~----~----~~~~  219 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVE-------DPIEFDIDGIGQTQVNPRVDM----T----FARG  219 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEE-------SSCCSCCSSSEEEECBGGGTB----C----HHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhc--CCCceEEEec-------cCcccccCCCCeeeecCCcCC----C----HHHH
Confidence            345999999999999999999999873  2334544453       221000101000000000000    0    0124


Q ss_pred             HHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (400)
Q Consensus       291 ie~AL~eG~dVIIDgT~~~~~~re~~i~~ark  322 (400)
                      +..++...-|||+-|-...+......++.+..
T Consensus       220 l~~~lR~dPDvi~igEiRd~~ta~~a~~aa~t  251 (401)
T d1p9ra_         220 LRAILRQDPDVVMVGEIRDLETAQIAVQASLT  251 (401)
T ss_dssp             HHHHGGGCCSEEEESCCCSHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCEEEecCcCChHHHHHHHHHHhc
Confidence            55578888888888888887776666666543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.15  E-value=0.0046  Score=56.45  Aligned_cols=44  Identities=25%  Similarity=0.204  Sum_probs=34.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      -++..++-+.|++||||||+++.|+..+.   ...+-+.+++.++..
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~   70 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITN   70 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTT
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccc
Confidence            35778999999999999999999998762   134568888777654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.14  E-value=0.0068  Score=52.97  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=23.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ...-++++|++|+||||++-.|.++ |+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~   40 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NH   40 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CC
Confidence            4567899999999999999999876 44

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.007  Score=55.57  Aligned_cols=42  Identities=12%  Similarity=0.217  Sum_probs=35.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      +...++.+.|+||+||||++-.++...  ...+..+++||+..-
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~--q~~g~~~vyidtE~~   93 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHA   93 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCC
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHH--HcCCCEEEEEccccc
Confidence            466799999999999999999998887  445678899998753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.11  E-value=0.0083  Score=51.92  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~  238 (400)
                      ...-+++.|.||+||||++-+|.++ |+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~   40 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GH   40 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TC
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CC
Confidence            4568999999999999999999888 44

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.0059  Score=54.85  Aligned_cols=48  Identities=25%  Similarity=0.353  Sum_probs=36.1

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      ++...-+...++-+.|++||||||+.+.|+...  +  ..+.+.+++.++..
T Consensus        17 ~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~--~--~~G~I~~~g~~i~~   64 (231)
T d1l7vc_          17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--S--GKGSIQFAGQPLEA   64 (231)
T ss_dssp             SEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC--C--CSSEEEESSSBGGG
T ss_pred             CEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--C--CceEEEECCEECCc
Confidence            333334678899999999999999999998743  2  45668888776653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.10  E-value=0.0053  Score=56.90  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=29.5

Q ss_pred             cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       200 ~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ++-..+...-++..++.+.|++||||||+++.|+..+
T Consensus        50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3444444445678899999999999999999999876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.07  E-value=0.0051  Score=56.11  Aligned_cols=41  Identities=17%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      ++..++-+.|++||||||+++.|+.-..   -..+-+.+++.++
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i   67 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLV   67 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEe
Confidence            5678999999999999999999987652   1234466665443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.06  E-value=0.0051  Score=55.70  Aligned_cols=43  Identities=21%  Similarity=0.126  Sum_probs=32.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -+...++.+.|++||||||+.+.++.-...   ..+-+.+++-++.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p---~sG~I~~~g~~i~   70 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTN   70 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECT
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccCCCCC---CcceeEECCEEcC
Confidence            367889999999999999999998876521   3455777765553

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.00  E-value=0.0057  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHh
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .=|+|.|.|||||||+...|...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34788999999999999999865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.99  E-value=0.0064  Score=48.75  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      =|++.|.||+||||+...+...-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.92  E-value=0.007  Score=55.16  Aligned_cols=43  Identities=19%  Similarity=0.221  Sum_probs=32.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -++..++-+.|++||||||+.+.|+.-+.   -..+-+.+++-++.
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~   71 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVT   71 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECT
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecc
Confidence            46778999999999999999999998762   12345777755443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.84  E-value=0.0097  Score=56.02  Aligned_cols=87  Identities=17%  Similarity=0.258  Sum_probs=49.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~  293 (400)
                      |+++|++||||||+.+.|+....  . ....+.| ++.++.-        ...............       ....++..
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~--~-~~rivtiEd~~El~l--------~~~~~~~~~~~~~~~-------~~~~ll~~  230 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIP--K-EERIISIEDTEEIVF--------KHHKNYTQLFFGGNI-------TSADCLKS  230 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSC--T-TCCEEEEESSCCCCC--------SSCSSEEEEECBTTB-------CHHHHHHH
T ss_pred             EEEEeeccccchHHHHHHhhhcc--c-ccceeeccchhhhhc--------ccccccceeccccch-------hHHHHHHH
Confidence            78899999999999999998873  2 3345555 3444321        000000000000000       11235566


Q ss_pred             HHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774          294 ALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (400)
Q Consensus       294 AL~eG~dVIIDgT~~~~~~re~~i~~a  320 (400)
                      ++...-|.|+-|-...+.-.. +++.+
T Consensus       231 ~lR~~pd~iivgEiR~~ea~~-~l~a~  256 (323)
T d1g6oa_         231 CLRMRPDRIILGELRSSEAYD-FYNVL  256 (323)
T ss_dssp             HTTSCCSEEEESCCCSTHHHH-HHHHH
T ss_pred             HhccCCCcccCCccCchhHHH-HHHHH
Confidence            888888999999888765443 33333

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.0063  Score=55.48  Aligned_cols=43  Identities=21%  Similarity=0.266  Sum_probs=33.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -....++-+.|++||||||+++.|+.-..   -..+-+.+++-++.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~   70 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELT   70 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEEC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEee
Confidence            36678999999999999999999987652   23355777766554

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.73  E-value=0.0076  Score=55.00  Aligned_cols=40  Identities=23%  Similarity=0.189  Sum_probs=29.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe  255 (400)
                      .++.+.|++||||||+.+.|+.-+.   -..+.+.+++-++..
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~   64 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITP   64 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTT
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCc
Confidence            4666789999999999999998762   134557777655543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.70  E-value=0.0098  Score=50.16  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      -|. |.+.|.|||||||+...|...
T Consensus        23 ~~~-I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          23 LPE-IALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCE-EEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCE-EEEECCCCCCHHHHHHHhcCC
Confidence            344 778899999999999999753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.69  E-value=0.0066  Score=49.46  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +..=|+|.|.|||||||+...|....
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34458899999999999999997653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.67  E-value=0.058  Score=48.30  Aligned_cols=51  Identities=25%  Similarity=0.354  Sum_probs=33.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS  265 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~  265 (400)
                      +.|  |+|.|.+|+||+++|+.|....  .......+.++...+. .......|++
T Consensus        23 ~~p--vlI~Ge~GtGK~~~A~~ih~~s--~~~~~~~~~~~~~~~~-~~~~~~~lfg   73 (247)
T d1ny5a2          23 ECP--VLITGESGVGKEVVARLIHKLS--DRSKEPFVALNVASIP-RDIFEAELFG   73 (247)
T ss_dssp             CSC--EEEECSTTSSHHHHHHHHHHHS--TTTTSCEEEEETTTSC-HHHHHHHHHC
T ss_pred             CCC--EEEECCCCcCHHHHHHHHHHhc--CCcccccccchhhhhh-hcccHHHhcC
Confidence            456  4777999999999999998765  2334456677765554 2333355544

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.66  E-value=0.012  Score=50.31  Aligned_cols=38  Identities=21%  Similarity=0.407  Sum_probs=32.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +|.+.++-.|+||||++..||..+  ...+.++.+||.|.
T Consensus         4 vIav~~~kGGvGKTtia~nLA~~l--a~~g~~VlliD~D~   41 (237)
T d1g3qa_           4 IISIVSGKGGTGKTTVTANLSVAL--GDRGRKVLAVDGDL   41 (237)
T ss_dssp             EEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCT
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHH--HhCCCCEEEEeCCC
Confidence            345667889999999999999988  56678999999984

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.019  Score=50.64  Aligned_cols=43  Identities=14%  Similarity=0.051  Sum_probs=32.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc----c----cCCCCCeEEEeCCccc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF----W----SGAATNAVVVEADAFK  254 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg----~----~~~~~~avvIdaDefR  254 (400)
                      ..+.+|+|+||+||||++-.|+...-    |    ...+.++++++.++..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~   79 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP   79 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchH
Confidence            45889999999999999999887521    0    2234568889988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.58  E-value=0.0074  Score=49.91  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |++.|.||+||||+...|..+
T Consensus         3 I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999854

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.56  E-value=0.0081  Score=55.05  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++-+.|++||||||+++.|+.-+.   -..+-+.+++.++
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i   66 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNI   66 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEe
Confidence            35778999999999999999999986541   2235567765544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.48  E-value=0.0087  Score=49.43  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .|.|.|.||+||||+...|...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.021  Score=50.49  Aligned_cols=23  Identities=17%  Similarity=0.366  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      =++|.|+||+|||+++..||.+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            35899999999999999999876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.42  E-value=0.0092  Score=54.01  Aligned_cols=43  Identities=23%  Similarity=0.123  Sum_probs=33.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR  254 (400)
                      -++..++-+.|++||||||+.+.|+..+.-   ..+-+.+++-++.
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~~p---~~G~i~i~G~~i~   67 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVV   67 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECcEecc
Confidence            467889999999999999999999987631   2345667665554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.02  Score=52.72  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      =++|.|+||+|||+++..||.+.
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHH
Confidence            45799999999999999999875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.40  E-value=0.01  Score=49.89  Aligned_cols=24  Identities=21%  Similarity=0.549  Sum_probs=20.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +| .|+|.|.|||||||+...|...
T Consensus         3 ~p-~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           3 QP-SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CC-EEEEECSTTSSHHHHHHHHHHS
T ss_pred             CC-EEEEECCCCCCHHHHHHHHhCC
Confidence            46 4577999999999999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.36  E-value=0.01  Score=48.52  Aligned_cols=22  Identities=50%  Similarity=0.551  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |++.|.|||||||+...|....
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            7899999999999999997653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.34  E-value=0.012  Score=48.42  Aligned_cols=27  Identities=37%  Similarity=0.455  Sum_probs=22.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+...=|++.|.||+||||+...|...
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcC
Confidence            345566899999999999999998654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.34  E-value=0.0067  Score=55.43  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef  253 (400)
                      -++..++-+.|++||||||+.+.|+.-..   -..+-+.+++-++
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i   69 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLV   69 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEe
Confidence            35678999999999999999999998652   1234466655443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.33  E-value=0.018  Score=50.97  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=31.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .|.++|-=|+||||++-.|+..+  ...|.++.+||.|-
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~L--A~~G~rVllID~D~   39 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHH--HhCCCcEEEEecCC
Confidence            45568889999999999999998  56788999999995

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.30  E-value=0.027  Score=49.06  Aligned_cols=42  Identities=10%  Similarity=0.138  Sum_probs=33.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc-cccCCCCCeEEEeCC
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES-FWSGAATNAVVVEAD  251 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l-g~~~~~~~avvIdaD  251 (400)
                      +.+.-+++.|+||+||||+|..+++.. .+...+++++.|.+|
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~   55 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE   55 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC
Confidence            467799999999999999999999865 223345678888775

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.003  Score=51.31  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      |-+.+|.|++||||||+..+|.--++
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            44778999999999999999986653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.012  Score=47.69  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |++.|.||+||||+..+|...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999854

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.05  E-value=0.037  Score=50.10  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=22.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+|.|.|..|.||||+|+.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            45689999999999999999998763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.92  E-value=0.015  Score=49.50  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      -|+|.|+|||||||+...|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.033  Score=51.99  Aligned_cols=89  Identities=17%  Similarity=0.124  Sum_probs=49.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC-e-EEEeCCccccchHHHHHHhcC----CCCChhhHhHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-A-VVVEADAFKETDVIYRALSSK----GHHDDMLQTAELVHQSST  284 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~-a-vvIdaDefRe~D~irk~L~~~----G~~~d~~~aa~~v~~~~~  284 (400)
                      ..+=+++.|++|+||||++..+++....  +... + ++.-.++..+.-..+......    ...+++    ...+....
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~~~~~--~~~~~v~~~~~iger~~ev~~~~~~~~~~vv~~t~d~~----~~~r~~~~  115 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQSIAY--NHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEP----ASRHVQVA  115 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHHHHHH--HCTTSEEEEEEEEECHHHHHHHHHHCSSEEEEEETTSC----HHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEeeceeHHHHHhHHhhcceEEEeccCCCc----hhHHHHHH
Confidence            4455788899999999999999986522  1122 2 233345554322222222111    001111    11223344


Q ss_pred             HHHHHHHHHHHhCCCcEEEEC
Q 015774          285 DAASSLLVTALNEGRDVIMDG  305 (400)
Q Consensus       285 ~~ae~lie~AL~eG~dVIIDg  305 (400)
                      ..+-.+++...++|+||++=-
T Consensus       116 ~~a~~iAEyfrd~G~dVLli~  136 (289)
T d1xpua3         116 EMVIEKAKRLVEHKKDVIILL  136 (289)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhccCceeec
Confidence            456678888889999987643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.79  E-value=0.014  Score=51.83  Aligned_cols=17  Identities=35%  Similarity=0.655  Sum_probs=13.7

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKD  231 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~  231 (400)
                      ++|.|+|||||||++-.
T Consensus        17 ~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEECCCTTSCHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHH
Confidence            46779999999988644

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.78  E-value=0.017  Score=47.34  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.||+||||++..+...
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.74  E-value=0.017  Score=47.63  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |++.|.+|+||||++..+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999999865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.018  Score=47.65  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.||+||||++..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.018  Score=47.25  Aligned_cols=22  Identities=32%  Similarity=0.592  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.||+||||++..+...-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999988753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.60  E-value=0.019  Score=47.09  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|++|+||||+...|...-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            5678999999999999997754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.60  E-value=0.022  Score=52.38  Aligned_cols=41  Identities=17%  Similarity=0.234  Sum_probs=35.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +.+.++.+.|+|||||||++..++...  ...+..+++||+..
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~a--qk~g~~v~yiDtE~   95 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEH   95 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSC
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHH--HhCCCEEEEEECCc
Confidence            567799999999999999999988876  44567789999874

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.018  Score=48.10  Aligned_cols=21  Identities=38%  Similarity=0.485  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.||+||||++..|...
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678899999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.54  E-value=0.019  Score=47.64  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .|.|.|.||+||||+...|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.019  Score=47.40  Aligned_cols=21  Identities=33%  Similarity=0.656  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.+|+||||++..+...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.45  E-value=0.025  Score=52.10  Aligned_cols=41  Identities=20%  Similarity=0.244  Sum_probs=34.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      +...++.+.|+||+||||++-.++...  ...+..+++||+..
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~--q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEH   98 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHH--HHTTCEEEEEESSC
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHH--hcCCCEEEEEECCc
Confidence            567899999999999999998888765  34556778899877

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.43  E-value=0.019  Score=51.70  Aligned_cols=17  Identities=47%  Similarity=0.786  Sum_probs=14.0

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKD  231 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~  231 (400)
                      ++|.|+|||||||++-.
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            56779999999998754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.02  Score=46.88  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .|.|.|.||+||||+...|...
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.019  Score=53.99  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=25.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      ++|.|.+|||||+++..+....  -..+.+++++|+
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~--~~~g~~~iiiD~   86 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTG--LLRGDRMVIVDP   86 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH--HHTTCEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH--HhCCCCEEEEeC
Confidence            6889999999999988766554  123456677764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.022  Score=46.76  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.||+||||++..+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.022  Score=47.24  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~~   28 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRNE   28 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.31  E-value=0.022  Score=46.83  Aligned_cols=22  Identities=18%  Similarity=0.560  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHcCC
Confidence            6789999999999999987643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.022  Score=46.97  Aligned_cols=22  Identities=18%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+....
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6889999999999999998753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.25  E-value=0.018  Score=51.50  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |.+-++.|++||||||+..+|.--+
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4588999999999999999986654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.024  Score=46.39  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7888999999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.09  E-value=0.11  Score=49.95  Aligned_cols=21  Identities=19%  Similarity=0.485  Sum_probs=18.7

Q ss_pred             EEEcCCCCcHHHHHHHHHHhc
Q 015774          216 LMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       216 LL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +|.|+||+|||+++..||.+.
T Consensus        47 llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          47 VLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             EEEECTTSCHHHHHHHHHHHH
T ss_pred             eEECCCCCCHHHHHHHHHHHH
Confidence            567999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.09  E-value=0.026  Score=45.93  Aligned_cols=21  Identities=14%  Similarity=0.260  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.+|+||||++..+...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.027  Score=46.37  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6889999999999999998654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.99  E-value=0.032  Score=52.79  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=27.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI  248 (400)
                      .+..|.+-|+-|+||||+++.|++.++.   +.+++++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~---~~~v~~~   39 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASG---GSPTLYF   39 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGC---SSCEEEE
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhcc---CCCeEEE
Confidence            4568999999999999999999999842   2344444

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.98  E-value=0.017  Score=48.02  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=21.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +.-.=|++.|.|||||||+...+...
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            33455889999999999999998644

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.96  E-value=0.027  Score=46.97  Aligned_cols=22  Identities=18%  Similarity=0.558  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~~   26 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNKK   26 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999998643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.026  Score=53.66  Aligned_cols=21  Identities=29%  Similarity=0.703  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~  234 (400)
                      +.+|.|+||+||||++..+..
T Consensus       165 ~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHHHH
Confidence            789999999999999866443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.028  Score=46.42  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.||+||||++..+...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.028  Score=46.62  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            8899999999999999988643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.83  E-value=0.019  Score=47.49  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +..=|++.|.||+||||+...+....
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34457889999999999999987543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.028  Score=46.11  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||+...+...-
T Consensus         5 i~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            5788999999999999988653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.76  E-value=0.059  Score=48.30  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+.-|+|.|.||+||||+...|..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            35567889999999999999999865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.03  Score=45.90  Aligned_cols=22  Identities=14%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6889999999999999988643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.031  Score=45.94  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.+|+||||++..+...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998775

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.031  Score=45.82  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         6 i~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7888999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.031  Score=46.04  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.||+||||+...+...-
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7889999999999999988753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.59  E-value=0.043  Score=49.17  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      .|.+.|-=|+||||++--||..+  ...|..+.+||.|-
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~L--A~~G~rVLlID~Dp   40 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAAL--AEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEECS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEecCC
Confidence            34558999999999999988877  45677999999994

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.58  E-value=0.043  Score=43.57  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=25.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      -...+|.+++|||||+++-.++...+     ..++++.
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~-----~~vli~~   40 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQG-----YKVLVLN   40 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTT-----CCEEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcC-----CcEEEEc
Confidence            46789999999999999988776664     3666554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.56  E-value=0.03  Score=50.44  Aligned_cols=24  Identities=33%  Similarity=0.392  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...++.|+||+||||+...|..+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh
Confidence            366889999999999999997654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.52  E-value=0.033  Score=51.20  Aligned_cols=27  Identities=22%  Similarity=0.159  Sum_probs=22.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .|-+-++.|++||||||+..+|.--+|
T Consensus        24 ~~~l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          24 ESNFTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356888999999999999999865443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.46  E-value=0.034  Score=45.55  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||+...+...-
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6778999999999999998754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.036  Score=45.09  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.+|+||||++..+...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.037  Score=45.57  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||+...+....
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6889999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.29  E-value=0.053  Score=44.74  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+.=|.+.|.+|+||||+...|...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3455788899999999999999864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.036  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+....
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6788999999999999987653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=0.028  Score=45.65  Aligned_cols=26  Identities=23%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ..+.=|.+.|.|++||||+...|...
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34445888999999999999988543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.18  E-value=0.038  Score=46.72  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHhhCC
Confidence            6788999999999999988653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.039  Score=45.07  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         7 v~liG~~~vGKTsLl~~~~~~~   28 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEGQ   28 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6678999999999999988654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.041  Score=45.86  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      =|+|.|.+|+||||+...+...-
T Consensus         7 KivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47999999999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.04  E-value=0.012  Score=47.52  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |.+.|.|++||||+...|..+
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            688999999999999999765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.03  E-value=0.043  Score=45.28  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6789999999999999987653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.044  Score=45.31  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5677999999999999988764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.055  Score=44.68  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      =|+|.|.+|+||||++..+...-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37889999999999999988754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.74  E-value=0.048  Score=51.48  Aligned_cols=33  Identities=15%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI  248 (400)
                      .|.+-|+-||||||+++.|++.+..  .+.+++++
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~--~g~~v~~~   39 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI--TPNRILLI   39 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT--SGGGEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh--cCCceEEE
Confidence            4899999999999999999999843  23344454

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.73  E-value=0.037  Score=42.82  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=24.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHH-HHHHhccccCCCCCeEEEe
Q 015774          211 SPVLLLMGGGMGAGKSTVLK-DIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk-~LA~~lg~~~~~~~avvId  249 (400)
                      +....++.++||||||+++- .+....  ...+..++++.
T Consensus         6 ~~~~~il~~~tGsGKT~~~~~~~~~~~--~~~~~~vli~~   43 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFLPQILAEC--ARRRLRTLVLA   43 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHH--HHTTCCEEEEE
T ss_pred             cCCcEEEEcCCCCChhHHHHHHHHHHh--hhcCceeeeee
Confidence            45677999999999997774 334443  12334556664

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.1  Score=42.75  Aligned_cols=37  Identities=24%  Similarity=0.202  Sum_probs=29.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      ..|-+++|||.|||||-.-..+.++  ...+..++++.+
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~--~~~g~~v~~ikp   38 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRF--QIAQYKCLVIKY   38 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH--HTTTCCEEEEEE
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHH--HHcCCcEEEEec
Confidence            4578999999999999888888777  445677877764

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.71  E-value=0.09  Score=43.71  Aligned_cols=39  Identities=21%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      .....|-+++|||.|||||-.-..+.++  ...+.+++++.
T Consensus         4 ~~~G~l~lI~GpMfSGKTteLi~~~~~~--~~~g~~vl~i~   42 (141)
T d1xx6a1           4 KDHGWVEVIVGPMYSGKSEELIRRIRRA--KIAKQKIQVFK   42 (141)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred             CcceeEEEEEeccccHHHHHHHHHHHHh--hhcCCcEEEEE
Confidence            3467899999999999999999988887  33566777775

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.71  E-value=0.048  Score=44.66  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999988764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.71  E-value=0.051  Score=48.62  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      ...+++++|||++||||+.+.++--
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHH
Confidence            3468999999999999999987643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.68  E-value=0.034  Score=46.15  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |-+.|.|++||||+...|...
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999998643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.68  E-value=0.027  Score=46.61  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=8.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.+|+||||++..|...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999988753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.68  E-value=0.049  Score=44.53  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||+...+....
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6789999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.044  Score=45.49  Aligned_cols=19  Identities=42%  Similarity=0.573  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIM  233 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA  233 (400)
                      |+|.|.+||||||+...+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999983

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.53  E-value=0.033  Score=46.11  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |.+.|.|++||||+...|...
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            567899999999999999643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.054  Score=45.31  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||+...+...-
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            7999999999999999988754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.16  E-value=0.058  Score=48.05  Aligned_cols=23  Identities=39%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHh
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~  235 (400)
                      .+++|+|||.+||||+.+.++--
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            48999999999999999986543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.13  E-value=0.092  Score=45.51  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+||||||+...+....
T Consensus         9 illlG~~~vGKTsll~~~~~~~   30 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRILH   30 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999987554

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.02  E-value=0.061  Score=44.33  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6778999999999999998753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.98  E-value=0.025  Score=51.22  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...++.|+||+||||+...|....
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            455688999999999999997654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.06  Score=44.50  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.+|+||||++..+...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998764

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.66  E-value=0.082  Score=45.81  Aligned_cols=31  Identities=19%  Similarity=0.490  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      +||+.|+..||||.+|..|+...      ++.+.|.+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~------~~~~YiAT   31 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDA------PQVLYIAT   31 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSC------SSEEEEEC
T ss_pred             CEEEECCCCccHHHHHHHHHhcC------CCcEEEEc
Confidence            57999999999999999998553      46666664

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.042  Score=45.39  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |+|.|.+|+||||+...+...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            677899999999999987654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.58  E-value=0.082  Score=45.82  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=21.8

Q ss_pred             CEE-EEEEcCCCCcHHHHHHHHHHhcc
Q 015774          212 PVL-LLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       212 P~l-ILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      |++ |.+.|-+++||||++.+|....|
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            554 88999999999999999976543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.31  E-value=0.057  Score=51.06  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      .|.|-|+-||||||+++.|++.++
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            488999999999999999998873

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.077  Score=44.49  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||+...+...-
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.23  E-value=0.078  Score=44.25  Aligned_cols=22  Identities=23%  Similarity=0.447  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||++..+...-
T Consensus         5 ivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6789999999999999988764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.96  E-value=0.36  Score=44.32  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      =+.+.|++|+||||++..++...
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            36778889999999999998764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.86  E-value=0.088  Score=43.21  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||+...+....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999997765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.76  E-value=0.23  Score=47.28  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHH
Q 015774          211 SPVLLLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       211 ~P~lILL~G~PGSGKSTlAk~LA~  234 (400)
                      .|.=|.+.|.||+||||+...|..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            567799999999999999999974

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.52  E-value=0.12  Score=44.97  Aligned_cols=26  Identities=35%  Similarity=0.560  Sum_probs=21.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.|. |-+.|.|.+||||++..|....
T Consensus         4 r~p~-IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPI-VSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCE-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCE-EEEEeCCCccHHHHHHHHHhhc
Confidence            4676 7778999999999999998754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.47  E-value=0.14  Score=41.65  Aligned_cols=22  Identities=36%  Similarity=0.454  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|..|+||||+...+....
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~   26 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIH   26 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            6889999999999999987654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.19  E-value=0.17  Score=41.69  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=27.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      .+-++.|||.|||||-.-..+.++  ...+.+++++.+
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~~~~--~~~~~kv~~ikp   38 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKP   38 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEE
T ss_pred             EEEEEEccccCHHHHHHHHHHHHH--HHCCCcEEEEEE
Confidence            577999999999999666666666  335667777764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.11  Score=43.40  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 015774          215 LLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      |+|.|.+|+||||+...+...-
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999988764

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.34  E-value=0.16  Score=42.20  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=22.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId  249 (400)
                      .++++|+|||||.++-.++...- ...+..++++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~-~~~~~~il~i~   59 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRL-TKYGGKVLMLA   59 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH-HHSCSCEEEEC
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHH-HhcCCcEEEEc
Confidence            36789999999987776665331 22244566665

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=88.25  E-value=0.25  Score=43.77  Aligned_cols=28  Identities=18%  Similarity=0.077  Sum_probs=24.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      ++...+++.|||++|||+++..|.+-++
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            3446899999999999999999999883

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.69  E-value=0.19  Score=42.83  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=22.3

Q ss_pred             CCCCEE-EEEEcCCCCcHHHHHHHHHH
Q 015774          209 ERSPVL-LLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       209 ~~~P~l-ILL~G~PGSGKSTlAk~LA~  234 (400)
                      ..+|++ |.+.|-..+||||++..|..
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            446765 89999999999999999975

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=87.45  E-value=0.15  Score=42.48  Aligned_cols=21  Identities=29%  Similarity=0.294  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 015774          215 LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      |-+.|.|.|||||+...|...
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            789999999999999999854

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.23  E-value=0.21  Score=45.33  Aligned_cols=28  Identities=14%  Similarity=0.143  Sum_probs=24.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      +....+++.|+|++||||++..|.+-+|
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3455888899999999999999999985

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.47  E-value=0.49  Score=42.28  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=24.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ...+.-+.+.|.|.+||||++..|..+-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccc
Confidence            3567789999999999999999998764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.83  E-value=0.29  Score=44.91  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE--eCCccccchHHHHHHhcCCC----------CChhhHhHHHHHHH
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV--EADAFKETDVIYRALSSKGH----------HDDMLQTAELVHQS  282 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI--daDefRe~D~irk~L~~~G~----------~~d~~~aa~~v~~~  282 (400)
                      +.+.|++|+|||+++..+.....   ....++++  -+...++....++.+.+.+.          .+++.-    .+..
T Consensus        70 ~~Ifg~~g~GKt~l~~~~~~~~~---~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~----~r~~  142 (276)
T d1fx0a3          70 ELIIGDRQTGKTAVATDTILNQQ---GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPAT----LQYL  142 (276)
T ss_dssp             CBEEESSSSSHHHHHHHHHHTCC---TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGG----GTTH
T ss_pred             EeeccCCCCChHHHHHHHHhhhc---ccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHH----HHHH
Confidence            56688899999999988765541   11223332  23433333334444433211          111110    1122


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEE
Q 015774          283 STDAASSLLVTALNEGRDVIMD  304 (400)
Q Consensus       283 ~~~~ae~lie~AL~eG~dVIID  304 (400)
                      +...+-.+++...++|+||++=
T Consensus       143 a~~~a~tiAEyfrd~G~~Vlll  164 (276)
T d1fx0a3         143 APYTGAALAEYFMYRERHTLII  164 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCceeEE
Confidence            2345566788888999987653

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.76  E-value=0.17  Score=42.75  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             EEEEcCCCCcHHHHHHH-HHHhccccCCCCCeEEEe
Q 015774          215 LLMGGGMGAGKSTVLKD-IMKESFWSGAATNAVVVE  249 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~-LA~~lg~~~~~~~avvId  249 (400)
                      +++++|+|||||+++.. +...+.   .++.+++|.
T Consensus        43 ~il~apTGsGKT~~a~l~i~~~~~---~~~~vl~l~   75 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVV   75 (202)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred             EEEEcCCCCchhHHHHHHHHHHhh---ccCcceeec
Confidence            67999999999998754 333331   234666665

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.56  E-value=0.3  Score=42.05  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             CCEE-EEEEcCCCCcHHHHHHHHHHh
Q 015774          211 SPVL-LLMGGGMGAGKSTVLKDIMKE  235 (400)
Q Consensus       211 ~P~l-ILL~G~PGSGKSTlAk~LA~~  235 (400)
                      +|++ |.+.|-+.+||||++..|...
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            3655 889999999999999999763

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.30  E-value=0.78  Score=40.84  Aligned_cols=42  Identities=17%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe  252 (400)
                      ...|...||.|..|||||-++-..+...  -.++..++++-+-.
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~~~--~~~g~qv~~l~Pt~  114 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAFLA--VDNHKQVAVLVPTT  114 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHHHH--HTTTCEEEEECSSH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHHHH--HHcCCceEEEccHH
Confidence            4678899999999999999999877664  24566788876543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.93  E-value=0.63  Score=41.26  Aligned_cols=26  Identities=35%  Similarity=0.581  Sum_probs=21.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..|.+ +++|...|||||++..|+..-
T Consensus        25 ~~P~i-vvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          25 DLPQI-AVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCEE-EEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCeE-EEEcCCCCCHHHHHHHHhCCC
Confidence            46764 567999999999999998754

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.38  E-value=0.049  Score=47.22  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=16.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      .+.|.+|  .||   ||+|+.++|.+++
T Consensus         8 ~~Rpivi--~Gp---~K~ti~~~L~~~~   30 (199)
T d1kjwa2           8 YARPIII--LGP---TKDRANDDLLSEF   30 (199)
T ss_dssp             SCCCEEE--EST---THHHHHHHHHHHC
T ss_pred             CCCCEEE--ECc---CHHHHHHHHHHhC
Confidence            3456544  454   7999999999975

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=84.38  E-value=0.31  Score=50.03  Aligned_cols=27  Identities=30%  Similarity=0.402  Sum_probs=24.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.++.|++.|-+|||||+.++.+.+.+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999987776

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.10  E-value=0.33  Score=49.67  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=23.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.++.|++.|-+|||||+.++.+.+.+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999987765

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=84.06  E-value=0.75  Score=47.67  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=23.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.++.|++.|-+|||||+.++.+.+.+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998887765

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.78  E-value=1.1  Score=41.01  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=46.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc----cccCCCCC-e-EEEeCCc-cccchHHHHHHhcCCC----------CChhhHhH
Q 015774          214 LLLMGGGMGAGKSTVLKDIMKES----FWSGAATN-A-VVVEADA-FKETDVIYRALSSKGH----------HDDMLQTA  276 (400)
Q Consensus       214 lILL~G~PGSGKSTlAk~LA~~l----g~~~~~~~-a-vvIdaDe-fRe~D~irk~L~~~G~----------~~d~~~aa  276 (400)
                      =+.+.|++|+|||+++..++...    .+.....+ + ++.-.++ .++....++.+.+.+.          .+++   .
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~tvvv~~ts~~~---~  146 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA---A  146 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC---H
T ss_pred             EEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccceEEEEECCCCC---H
Confidence            35667999999999998877542    11111112 2 2222222 2232333344433211          1111   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEE--EECcCC
Q 015774          277 ELVHQSSTDAASSLLVTALNEGRDVI--MDGTLS  308 (400)
Q Consensus       277 ~~v~~~~~~~ae~lie~AL~eG~dVI--IDgT~~  308 (400)
                       ..+..+...+-.+++...++|+||+  +|++..
T Consensus       147 -~~r~~~~~~a~tiAEyfrd~G~~VLll~Dsltr  179 (285)
T d2jdia3         147 -PLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK  179 (285)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCCcEEEEEcChHH
Confidence             1122334456678888889999886  455444

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.63  E-value=0.29  Score=42.22  Aligned_cols=34  Identities=12%  Similarity=0.028  Sum_probs=23.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      +++.+|+|+|||+++-..+..+  ...+..+++|.+
T Consensus        61 ~~i~apTGsGKT~~~~~~~~~~--~~~~~rvliv~P   94 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMSLFL--ALKGKRCYVIFP   94 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHHHHH--HTTSCCEEEEES
T ss_pred             EEEEecCCChHHHHHHHHHHHH--HHhcCeEEEEec
Confidence            5677999999998876655443  223456777664

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=82.64  E-value=0.4  Score=49.25  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      ..|+.|++.|-+|||||+.++.+.+.+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999987765

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.61  E-value=0.46  Score=41.11  Aligned_cols=26  Identities=31%  Similarity=0.485  Sum_probs=22.0

Q ss_pred             CEE-EEEEcCCCCcHHHHHHHHHHhcc
Q 015774          212 PVL-LLMGGGMGAGKSTVLKDIMKESF  237 (400)
Q Consensus       212 P~l-ILL~G~PGSGKSTlAk~LA~~lg  237 (400)
                      |++ |.+.|--++||||++..|....|
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g   28 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRG   28 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHB
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcC
Confidence            555 88899999999999999976654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=82.46  E-value=0.42  Score=40.03  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             CCCEE-EEEEcCCCCcHHHHHHHHHH
Q 015774          210 RSPVL-LLMGGGMGAGKSTVLKDIMK  234 (400)
Q Consensus       210 ~~P~l-ILL~G~PGSGKSTlAk~LA~  234 (400)
                      ++|++ |-+.|-+.+||||+...|..
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHh
Confidence            35555 67889999999999999975

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.15  E-value=0.43  Score=49.07  Aligned_cols=27  Identities=33%  Similarity=0.457  Sum_probs=24.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.++.|++.|-+|||||+.++.+.+.+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999987765

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.91  E-value=0.42  Score=49.67  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=24.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (400)
Q Consensus       210 ~~P~lILL~G~PGSGKSTlAk~LA~~l  236 (400)
                      +.++.|++.|-+|||||+.++.+.+.+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999887765

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.90  E-value=0.63  Score=39.56  Aligned_cols=30  Identities=23%  Similarity=0.228  Sum_probs=23.5

Q ss_pred             EEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774          216 LMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       216 LL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda  250 (400)
                      ++.+++|+|||-++-.++.+++     ..+++|.+
T Consensus        89 ll~~~tG~GKT~~a~~~~~~~~-----~~~Liv~p  118 (206)
T d2fz4a1          89 CIVLPTGSGKTHVAMAAINELS-----TPTLIVVP  118 (206)
T ss_dssp             EEEESSSTTHHHHHHHHHHHSC-----SCEEEEES
T ss_pred             EEEeCCCCCceehHHhHHHHhc-----CceeEEEc
Confidence            4677999999999999998873     46666653

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=81.76  E-value=0.28  Score=43.01  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CCEEEEEEcCCCCcHHH-HHHHHHHhccccCCCCCeEEEeC
Q 015774          211 SPVLLLMGGGMGAGKST-VLKDIMKESFWSGAATNAVVVEA  250 (400)
Q Consensus       211 ~P~lILL~G~PGSGKST-lAk~LA~~lg~~~~~~~avvIda  250 (400)
                      +...+++.+++|||||+ ++-.+....  ...+..++++.+
T Consensus         8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~--~~~~~~~lvi~P   46 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKRYLPAIVREA--IKRGLRTLILAP   46 (305)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHH--HHHTCCEEEEES
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHHHHH--HhcCCEEEEEcc
Confidence            45678999999999996 333333322  112346677654