Citrus Sinensis ID: 015808

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

MRRTVSKITDWHLGFRNSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVANMNYATSSANLSEDPLKDKDNHRVSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccEEEcccccccHHHHccccccccHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHHccccccccccccccccEEEEcccccEEEEEccccccccccccccEEccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccc

ccccEEEEEcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEEEEEccccEEEEEcccccccccccccHcccHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHccccccEEEEcccHcHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEcccccccccccEccHHHHHHHHHHHcccccccccccccccEEEEEccccEEEEEEEEcccccccccccEEEEccccEEEEEEccccccHHHHHHccccHHHHHHHHHHHHHHcHHHcccccccccccccccEEEcc

mrrtvskitdwhlgfrnsnfflvdsqlgwlpsvltsgtddhllhKSVANMNyatssanlsedplkdkdnhrvSDMLIDSFGRMHTYLRISLTErcnlrchycmppegvdltpkpqllSLNEILRLAYLFVTSGvdkirltggeptvrKDIEEACFHLsklkglktlaMTTNGLTLArklpklkesgltsvnisldtlvpakfefltrrkGHEKVMESINAAIEVGYNPVKVNCVVmrgfnddeicdfveltrdrpinirfiefmpfdgnvwnvkkLVPYAEMLDTVVkkfpglrrmqdhptetaknfkidghhgnvsFITSMTEHFCAGCNrlrlladgnfkvclfgpsevslrdplrqnasdDELREIIGAAVKRKKAAHAGMFDIaktanrpmihigg

mrrtvskitdwhlgfrnSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVANMNYATssanlsedplkdkdNHRVSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTsgvdkirltggeptvrkDIEEACFHlsklkglktlaMTTNGLTLArklpklkesgltsvnisldtlvpaKFEFLTRRKGHEKVMESINAaievgynpVKVNCVVMRGFNDDEICDFVELTRDRPINIRFiefmpfdgnvWNVKKLVPYAEMLDTVVKKfpglrrmqDHPTETaknfkidghHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFgpsevslrdplrqnasdDELREIIGAAVKRKKAAHAGMfdiaktanrpmihigg

******KITDWHLGFRNSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVA*************************DMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRM******TAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSE******************IIGAAVKR**AAHAGMFDIA************

*********DWHLGFRN***********************************************************IDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP**RR*****TETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHA*********NRPMIHIGG

*RRTVSKITDWHLGFRNSNFFLVDSQLGW****************************************HRVSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHA*********NR*******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		400	2.2.26 [Sep-21-2011]
Q39055		390	Cyclic pyranopterin monop	yes	no	0.975	1.0	0.765	1e-180
Q5RKZ7		636	Molybdenum cofactor biosy	no	no	0.817	0.514	0.657	1e-127
Q9NZB8		636	Molybdenum cofactor biosy	no	no	0.815	0.512	0.647	1e-126
Q1JQD7		633	Molybdenum cofactor biosy	no	no	0.815	0.515	0.650	1e-122
Q54NM6		630	Molybdenum cofactor biosy	yes	no	0.86	0.546	0.532	1e-110
Q8IQF1		565	Molybdenum cofactor biosy	no	no	0.837	0.592	0.546	1e-102
Q20624		600	Molybdenum cofactor biosy	no	no	0.762	0.508	0.543	5e-91
Q93KD1		325	Cyclic pyranopterin monop	N/A	no	0.792	0.975	0.440	2e-71
Q2RGL2		323	Cyclic pyranopterin monop	yes	no	0.8	0.990	0.438	1e-70
Q0AVU6		326	Cyclic pyranopterin monop	yes	no	0.805	0.987	0.413	2e-70

>sp\|Q39055\|CNX2_ARATH Cyclic pyranopterin monophosphate synthase, mitochondrial OS=Arabidopsis thaliana GN=CNX2 PE=1 SV=1	Back alignment and function desciption

 Score =  632 bits (1630), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/400 (76%), Positives = 345/400 (86%), Gaps = 10/400 (2%)

Query: 1   MRRTVSKITDWHLGFRNSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVANMNYATSSANLS 60
           MRR  SKITD HLGF+NSNF LV S++G       SG+    +  + +   +++S A   
Sbjct: 1   MRRCFSKITDCHLGFKNSNFLLVGSEVG-------SGSVTRTITTTTSERLFSSSYAAHQ 53

Query: 61  EDPLKDKDNHRVSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLN 120
            D +KD   + VSDMLID FGR+HTYLRISLTERCNLRC YCMP EGV+LTPKPQLLS +
Sbjct: 54  VDQIKD---NPVSDMLIDKFGRLHTYLRISLTERCNLRCQYCMPSEGVELTPKPQLLSQS 110

Query: 121 EILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLP 180
           EI+RLA LFV++GV+KIRLTGGEPTVRKDIEE C  LS LKGLK LA+TTNG+TLA+KLP
Sbjct: 111 EIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKGLKNLAITTNGITLAKKLP 170

Query: 181 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN 240
           +LKE GL S+NISLDTLVPAKFEFLTRRKGH++VM+SI+ AIE+GYNPVKVNCV+MRG N
Sbjct: 171 RLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAIELGYNPVKVNCVIMRGLN 230

Query: 241 DDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHP 300
           DDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAE++D VVK+FP ++RMQDHP
Sbjct: 231 DDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEVMDKVVKRFPSIKRMQDHP 290

Query: 301 TETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQN 360
           TETAKNF IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLR  
Sbjct: 291 TETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRSG 350

Query: 361 ASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 400
           A D+ LREIIGAAVKRKKAAHAGM DIAKTANRPMIHIGG
Sbjct: 351 ADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390

Involved in molybdenum cofactor biosynthesis.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q5RKZ7\|MOCS1_MOUSE Molybdenum cofactor biosynthesis protein 1 OS=Mus musculus GN=Mocs1 PE=2 SV=2	Back alignment and function description

>sp\|Q9NZB8\|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3	Back alignment and function description

>sp\|Q1JQD7\|MOCS1_BOVIN Molybdenum cofactor biosynthesis protein 1 OS=Bos taurus GN=MOCS1 PE=2 SV=2	Back alignment and function description

>sp\|Q54NM6\|MOCS1_DICDI Molybdenum cofactor biosynthesis protein 1 OS=Dictyostelium discoideum GN=mocs1 PE=3 SV=1	Back alignment and function description

>sp\|Q8IQF1\|MOCS1_DROME Molybdenum cofactor biosynthesis protein 1 OS=Drosophila melanogaster GN=Mocs1 PE=2 SV=1	Back alignment and function description

>sp\|Q20624\|MOCS1_CAEEL Molybdenum cofactor biosynthesis protein 1 OS=Caenorhabditis elegans GN=F49E2.1 PE=2 SV=3	Back alignment and function description

>sp\|Q93KD1\|MOAA_EUBAC Cyclic pyranopterin monophosphate synthase OS=Eubacterium acidaminophilum GN=moaA PE=3 SV=2	Back alignment and function description

>sp\|Q2RGL2\|MOAA_MOOTA Cyclic pyranopterin monophosphate synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=moaA PE=3 SV=1	Back alignment and function description

>sp\|Q0AVU6\|MOAA_SYNWW Cyclic pyranopterin monophosphate synthase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=moaA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		400
42570346		390	Molybdopterin biosynthesis protein CNX2	0.975	1.0	0.765	1e-179
255542249		390	molybdopterin cofactor synthesis protein	0.97	0.994	0.776	1e-178
21592848		390	molybdopterin synthase (CNX2) [Arabidops	0.975	1.0	0.762	1e-178
297826647		389	hypothetical protein ARALYDRAFT_482122 [	0.972	1.0	0.762	1e-178
297741210		468	unnamed protein product [Vitis vinifera]	0.992	0.848	0.736	1e-176
356525689		400	PREDICTED: molybdopterin biosynthesis pr	0.992	0.992	0.741	1e-175
225450297		373	PREDICTED: molybdopterin biosynthesis pr	0.87	0.932	0.837	1e-173
356557102		399	PREDICTED: molybdopterin biosynthesis pr	0.992	0.994	0.743	1e-173
449436241		403	PREDICTED: molybdopterin biosynthesis pr	0.992	0.985	0.737	1e-173
449489090		403	PREDICTED: molybdopterin biosynthesis pr	0.992	0.985	0.737	1e-173

>gi|42570346|ref|NP_850177.2| Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana] gi|79323865|ref|NP_001031461.1| Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana] gi|3023535|sp|Q39055.1|CNX2_ARATH RecName: Full=Cyclic pyranopterin monophosphate synthase, mitochondrial; AltName: Full=Molybdenum cofactor biosynthesis enzyme CNX2; AltName: Full=Molybdopterin biosynthesis protein CNX2; AltName: Full=Molybdopterin precursor Z synthase; Flags: Precursor gi|662871|emb|CAA88107.1| Cnx2 [Arabidopsis thaliana] gi|17529062|gb|AAL38741.1| unknown protein [Arabidopsis thaliana] gi|20465495|gb|AAM20207.1| putative molybdopterin synthase (CNX2) [Arabidopsis thaliana] gi|330253514|gb|AEC08608.1| Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana] gi|330253515|gb|AEC08609.1| Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana]

Back alignment and taxonomy information

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 306/400 (76%), Positives = 345/400 (86%), Gaps = 10/400 (2%)

Query: 1   MRRTVSKITDWHLGFRNSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVANMNYATSSANLS 60
           MRR  SKITD HLGF+NSNF LV S++G       SG+    +  + +   +++S A   
Sbjct: 1   MRRCFSKITDCHLGFKNSNFLLVGSEVG-------SGSVTRTITTTTSERLFSSSYAAHQ 53

Query: 61  EDPLKDKDNHRVSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLN 120
            D +KD   + VSDMLID FGR+HTYLRISLTERCNLRC YCMP EGV+LTPKPQLLS +
Sbjct: 54  VDQIKD---NPVSDMLIDKFGRLHTYLRISLTERCNLRCQYCMPSEGVELTPKPQLLSQS 110

Query: 121 EILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLP 180
           EI+RLA LFV++GV+KIRLTGGEPTVRKDIEE C  LS LKGLK LA+TTNG+TLA+KLP
Sbjct: 111 EIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKGLKNLAITTNGITLAKKLP 170

Query: 181 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN 240
           +LKE GL S+NISLDTLVPAKFEFLTRRKGH++VM+SI+ AIE+GYNPVKVNCV+MRG N
Sbjct: 171 RLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAIELGYNPVKVNCVIMRGLN 230

Query: 241 DDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHP 300
           DDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAE++D VVK+FP ++RMQDHP
Sbjct: 231 DDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEVMDKVVKRFPSIKRMQDHP 290

Query: 301 TETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQN 360
           TETAKNF IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLR  
Sbjct: 291 TETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRSG 350

Query: 361 ASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 400
           A D+ LREIIGAAVKRKKAAHAGM DIAKTANRPMIHIGG
Sbjct: 351 ADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542249\|ref\|XP_002512188.1\| molybdopterin cofactor synthesis protein A, putative [Ricinus communis] gi\|223548732\|gb\|EEF50222.1\| molybdopterin cofactor synthesis protein A, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|21592848\|gb\|AAM64798.1\| molybdopterin synthase (CNX2) [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297826647\|ref\|XP_002881206.1\| hypothetical protein ARALYDRAFT_482122 [Arabidopsis lyrata subsp. lyrata] gi\|297327045\|gb\|EFH57465.1\| hypothetical protein ARALYDRAFT_482122 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297741210\|emb\|CBI32161.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356525689\|ref\|XP_003531456.1\| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Glycine max]	Back alignment and taxonomy information

>gi\|225450297\|ref\|XP_002267864.1\| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356557102\|ref\|XP_003546857.1\| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449436241\|ref\|XP_004135901.1\| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449489090\|ref\|XP_004158212.1\| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		400
TAIR\|locus:2827337		390	CNX2 "cofactor of nitrate redu	0.975	1.0	0.765	6.3e-163
UNIPROTKB\|F1NZS3		342	MOCS1 "Uncharacterized protein	0.82	0.959	0.646	8.2e-115
MGI\|MGI:1928904		636	Mocs1 "molybdenum cofactor syn	0.817	0.514	0.657	1.3e-114
RGD\|1308471		480	Mocs1 "molybdenum cofactor syn	0.817	0.681	0.648	9.4e-114
UNIPROTKB\|F1N8A1		366	MOCS1 "Uncharacterized protein	0.815	0.890	0.644	1.5e-113
UNIPROTKB\|E2RDQ4		634	MOCS1 "Uncharacterized protein	0.815	0.514	0.650	8.4e-113
UNIPROTKB\|Q1JQD7		633	MOCS1 "Molybdenum cofactor bio	0.815	0.515	0.650	1.1e-112
UNIPROTKB\|Q9NZB8		636	MOCS1 "Molybdenum cofactor bio	0.815	0.512	0.647	1.1e-112
UNIPROTKB\|F1RVP4		637	MOCS1 "Uncharacterized protein	0.815	0.511	0.634	1.4e-110
ZFIN\|ZDB-GENE-130215-1		402	mocs1 "molybdenum cofactor syn	0.835	0.830	0.625	1.8e-110

TAIR\|locus:2827337 CNX2 "cofactor of nitrate reductase and xanthine dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1586 (563.4 bits), Expect = 6.3e-163, P = 6.3e-163
 Identities = 306/400 (76%), Positives = 344/400 (86%)

Query:     1 MRRTVSKITDWHLGFRNSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVANMNYATSSANLS 60
             MRR  SKITD HLGF+NSNF LV S++G       SG+    +  + +   +++S A   
Sbjct:     1 MRRCFSKITDCHLGFKNSNFLLVGSEVG-------SGSVTRTITTTTSERLFSSSYAAHQ 53

Query:    61 EDPLKDKDNHRVSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLN 120
              D +KD     VSDMLID FGR+HTYLRISLTERCNLRC YCMP EGV+LTPKPQLLS +
Sbjct:    54 VDQIKDNP---VSDMLIDKFGRLHTYLRISLTERCNLRCQYCMPSEGVELTPKPQLLSQS 110

Query:   121 EILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLP 180
             EI+RLA LFV++GV+KIRLTGGEPTVRKDIEE C  LS LKGLK LA+TTNG+TLA+KLP
Sbjct:   111 EIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKGLKNLAITTNGITLAKKLP 170

Query:   181 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN 240
             +LKE GL S+NISLDTLVPAKFEFLTRRKGH++VM+SI+ AIE+GYNPVKVNCV+MRG N
Sbjct:   171 RLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAIELGYNPVKVNCVIMRGLN 230

Query:   241 DDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHP 300
             DDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAE++D VVK+FP ++RMQDHP
Sbjct:   231 DDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEVMDKVVKRFPSIKRMQDHP 290

Query:   301 TETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQN 360
             TETAKNF IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLR  
Sbjct:   291 TETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRSG 350

Query:   361 ASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 400
             A D+ LREIIGAAVKRKKAAHAGM DIAKTANRPMIHIGG
Sbjct:   351 ADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390

GO:0003824 "catalytic activity" evidence=IEA;IGI

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA;IGI

GO:0019008 "molybdopterin synthase complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

GO:0009507 "chloroplast" evidence=ISS

UNIPROTKB\|F1NZS3 MOCS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1928904 Mocs1 "molybdenum cofactor synthesis 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308471 Mocs1 "molybdenum cofactor synthesis 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8A1 MOCS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RDQ4 MOCS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q1JQD7 MOCS1 "Molybdenum cofactor biosynthesis protein 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NZB8 MOCS1 "Molybdenum cofactor biosynthesis protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVP4 MOCS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-130215-1 mocs1 "molybdenum cofactor synthesis 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1B3F3	MOAA_MYCSS	No assigned EC number	0.3963	0.81	0.9257	yes	no
Q9RJ47	MOAA_STRCO	No assigned EC number	0.4181	0.8125	0.9530	yes	no
A3Q648	MOAA_MYCSJ	No assigned EC number	0.3963	0.81	0.9257	yes	no
A4J6S5	MOAA_DESRM	No assigned EC number	0.4359	0.805	0.9907	yes	no
Q39055	CNX2_ARATH	No assigned EC number	0.765	0.975	1.0	yes	no
Q31JB9	MOAA_THICR	No assigned EC number	0.3584	0.805	0.9728	yes	no
B0TI16	MOAA_HELMI	No assigned EC number	0.4151	0.805	0.9847	yes	no
Q0AVU6	MOAA_SYNWW	No assigned EC number	0.4133	0.805	0.9877	yes	no
A4QDF8	MOAA_CORGB	No assigned EC number	0.3955	0.86	0.9124	yes	no
A1ULP7	MOAA_MYCSK	No assigned EC number	0.3963	0.81	0.9257	yes	no
Q8NR60	MOAA_CORGL	No assigned EC number	0.3927	0.86	0.9124	yes	no
Q7UT69	MOAA_RHOBA	No assigned EC number	0.4108	0.81	0.9025	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		400
PLN02951		373	PLN02951, PLN02951, Molybderin biosynthesis protei	0.0
PRK00164		331	PRK00164, moaA, molybdenum cofactor biosynthesis p	1e-141
TIGR02666		334	TIGR02666, moaA, molybdenum cofactor biosynthesis	1e-136
COG2896		322	COG2896, MoaA, Molybdenum cofactor biosynthesis en	1e-125
PRK13361		329	PRK13361, PRK13361, molybdenum cofactor biosynthes	4e-95
TIGR02668		302	TIGR02668, moaA_archaeal, probable molybdenum cofa	9e-74
pfam06463		127	pfam06463, Mob_synth_C, Molybdenum Cofactor Synthe	1e-49
pfam04055		165	pfam04055, Radical_SAM, Radical SAM superfamily	1e-32
COG0535		347	COG0535, COG0535, Predicted Fe-S oxidoreductases [	8e-25
cd01335		204	cd01335, Radical_SAM, Radical SAM superfamily	1e-19
TIGR02109		358	TIGR02109, PQQ_syn_pqqE, coenzyme PQQ biosynthesis	3e-17
PRK05301		378	PRK05301, PRK05301, pyrroloquinoline quinone biosy	6e-17
COG2100		414	COG2100, COG2100, Predicted Fe-S oxidoreductase [G	2e-13
TIGR04347		390	TIGR04347, pseudo_SAM_Halo, pseudo-rSAM protein/SP	2e-13
smart00729		216	smart00729, Elp3, Elongator protein 3, MiaB family	8e-13
TIGR04055		325	TIGR04055, rSAM_NirJ2, putative heme d1 biosynthes	3e-12
COG0641		378	COG0641, AslB, Arylsulfatase regulator (Fe-S oxido	3e-11
COG1964		475	COG1964, COG1964, Predicted Fe-S oxidoreductases [	6e-11
COG1180		260	COG1180, PflA, Pyruvate-formate lyase-activating e	1e-10
TIGR04133		350	TIGR04133, rSAM_w_lipo, radical SAM enzyme, rSAM/l	2e-09
TIGR04054		351	TIGR04054, rSAM_NirJ1, putative heme d1 biosynthes	4e-09
TIGR04317		349	TIGR04317, W_rSAM_matur, tungsten cofactor oxidore	1e-08
TIGR04251		353	TIGR04251, SCM_rSAM_ScmF, SynChlorMet cassette rad	4e-08
TIGR04053		365	TIGR04053, sam_11, radical SAM protein, BA_1875 fa	5e-08
TIGR03470		318	TIGR03470, HpnH, hopanoid biosynthesis associated	6e-08
TIGR02495		192	TIGR02495, NrdG2, anaerobic ribonucleoside-triphos	2e-07
TIGR04103		412	TIGR04103, rSAM_nif11_3, nif11-class peptide radic	6e-07
TIGR02493		235	TIGR02493, PFLA, pyruvate formate-lyase 1-activati	6e-07
TIGR03963		219	TIGR03963, rSAM_QueE_Clost, putative 7-cyano-7-dea	1e-06
TIGR03961		332	TIGR03961, rSAM_PTO1314, archaeal radical SAM prot	1e-06
TIGR04051		354	TIGR04051, rSAM_NirJ, heme d1 biosynthesis radical	2e-06
TIGR04321		507	TIGR04321, spiroSPASM, spiro-SPASM protein	2e-06
TIGR03962		339	TIGR03962, mycofact_rSAM, mycofactocin radical SAM	3e-06
TIGR04303		325	TIGR04303, GeoRSP_rSAM, GeoRSP system radical SAM/	1e-05
TIGR04163		428	TIGR04163, rSAM_cobopep, peptide-modifying radical	2e-04
COG0731		296	COG0731, COG0731, Fe-S oxidoreductases [Energy pro	2e-04
TIGR01290		442	TIGR01290, nifB, nitrogenase cofactor biosynthesis	3e-04
COG0602		212	COG0602, NrdG, Organic radical activating enzymes	3e-04
TIGR04269		363	TIGR04269, SAM_SPASM_FxsB, radical SAM/SPASM domai	4e-04
COG2108		353	COG2108, COG2108, Uncharacterized conserved protei	7e-04
TIGR03913		477	TIGR03913, rad_SAM_trio, Y_X(10)_GDL-associated ra	0.001
TIGR04250		358	TIGR04250, SCM_rSAM_ScmE, SynChlorMet cassette rad	0.001
COG0820		349	COG0820, COG0820, Predicted Fe-S-cluster redox enz	0.002
COG1060		370	COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a	0.002
TIGR04150		407	TIGR04150, pseudo_rSAM_GG, pseudo-rSAM protein, GG	0.003
TIGR03942		363	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-mat	0.004
TIGR03977		292	TIGR03977, rSAM_pair_HxsC, His-Xaa-Ser system radi	0.004
TIGR04080		440	TIGR04080, rSAM_pep_cyc, KxxxW cyclic peptide radi	0.004

>gnl\|CDD\|215513 PLN02951, PLN02951, Molybderin biosynthesis protein CNX2	Back alignment and domain information

 Score =  701 bits (1812), Expect = 0.0
 Identities = 291/396 (73%), Positives = 329/396 (83%), Gaps = 23/396 (5%)

Query: 5   VSKITDWHLGFRNSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVANMNYATSSANLSEDPL 64
           +SK+ D  LGFR+S+F L +                       +  + ++S A    DP 
Sbjct: 1   LSKLADLRLGFRSSSFQLQEPGS--------------------SIFSASSSYAADQVDPE 40

Query: 65  KDKDNHRVSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILR 124
                  VSDML+DSFGR H YLRISLTERCNLRC YCMP EGV+LTPK  LLS +EI+R
Sbjct: 41  ASNP---VSDMLVDSFGRRHNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVR 97

Query: 125 LAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE 184
           LA LFV +GVDKIRLTGGEPT+RKDIE+ C  LS LKGLKTLAMTTNG+TL+RKLP+LKE
Sbjct: 98  LAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKE 157

Query: 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEI 244
           +GLTS+NISLDTLVPAKFEFLTRRKGH++V+ESI+ AIE+GYNPVKVNCVVMRGFNDDEI
Sbjct: 158 AGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEI 217

Query: 245 CDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETA 304
           CDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAEM+D + ++FP L+R+QDHPT+TA
Sbjct: 218 CDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTA 277

Query: 305 KNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDD 364
           KNF+IDGH G+VSFITSMTEHFCAGCNRLRLLADGN KVCLFGPSEVSLRD LR  A DD
Sbjct: 278 KNFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNLKVCLFGPSEVSLRDALRSGADDD 337

Query: 365 ELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 400
           ELREIIGAAVKRKKAAHAGMFD+AKTANRPMIHIGG
Sbjct: 338 ELREIIGAAVKRKKAAHAGMFDLAKTANRPMIHIGG 373

Length = 373

>gnl\|CDD\|234672 PRK00164, moaA, molybdenum cofactor biosynthesis protein A; Reviewed	Back alignment and domain information

>gnl\|CDD\|233967 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A, bacterial	Back alignment and domain information

>gnl\|CDD\|225449 COG2896, MoaA, Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|237364 PRK13361, PRK13361, molybdenum cofactor biosynthesis protein A; Provisional	Back alignment and domain information

>gnl\|CDD\|233968 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal	Back alignment and domain information

>gnl\|CDD\|115139 pfam06463, Mob_synth_C, Molybdenum Cofactor Synthesis C	Back alignment and domain information

>gnl\|CDD\|217866 pfam04055, Radical_SAM, Radical SAM superfamily	Back alignment and domain information

>gnl\|CDD\|223609 COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|100105 cd01335, Radical_SAM, Radical SAM superfamily	Back alignment and domain information

>gnl\|CDD\|162708 TIGR02109, PQQ_syn_pqqE, coenzyme PQQ biosynthesis enzyme PqqE	Back alignment and domain information

>gnl\|CDD\|235397 PRK05301, PRK05301, pyrroloquinoline quinone biosynthesis protein PqqE; Provisional	Back alignment and domain information

>gnl\|CDD\|225011 COG2100, COG2100, Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|213960 TIGR04347, pseudo_SAM_Halo, pseudo-rSAM protein/SPASM domain protein	Back alignment and domain information

>gnl\|CDD\|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM	Back alignment and domain information

>gnl\|CDD\|188570 TIGR04055, rSAM_NirJ2, putative heme d1 biosynthesis radical SAM protein NirJ2	Back alignment and domain information

>gnl\|CDD\|223714 COG0641, AslB, Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224875 COG1964, COG1964, Predicted Fe-S oxidoreductases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224101 COG1180, PflA, Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|200384 TIGR04133, rSAM_w_lipo, radical SAM enzyme, rSAM/lipoprotein system	Back alignment and domain information

>gnl\|CDD\|188569 TIGR04054, rSAM_NirJ1, putative heme d1 biosynthesis radical SAM protein NirJ1	Back alignment and domain information

>gnl\|CDD\|234539 TIGR04317, W_rSAM_matur, tungsten cofactor oxidoreducase radical SAM maturase	Back alignment and domain information

>gnl\|CDD\|211974 TIGR04251, SCM_rSAM_ScmF, SynChlorMet cassette radical SAM/SPASM protein ScmF	Back alignment and domain information

>gnl\|CDD\|234449 TIGR04053, sam_11, radical SAM protein, BA_1875 family	Back alignment and domain information

>gnl\|CDD\|213816 TIGR03470, HpnH, hopanoid biosynthesis associated radical SAM protein HpnH	Back alignment and domain information

>gnl\|CDD\|233896 TIGR02495, NrdG2, anaerobic ribonucleoside-triphosphate reductase activating protein	Back alignment and domain information

>gnl\|CDD\|200354 TIGR04103, rSAM_nif11_3, nif11-class peptide radical SAM maturase 3	Back alignment and domain information

>gnl\|CDD\|131546 TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme	Back alignment and domain information

>gnl\|CDD\|188478 TIGR03963, rSAM_QueE_Clost, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, clostridial	Back alignment and domain information

>gnl\|CDD\|188476 TIGR03961, rSAM_PTO1314, archaeal radical SAM protein, PTO1314 family	Back alignment and domain information

>gnl\|CDD\|188566 TIGR04051, rSAM_NirJ, heme d1 biosynthesis radical SAM protein NirJ	Back alignment and domain information

>gnl\|CDD\|234542 TIGR04321, spiroSPASM, spiro-SPASM protein	Back alignment and domain information

>gnl\|CDD\|188477 TIGR03962, mycofact_rSAM, mycofactocin radical SAM maturase	Back alignment and domain information

>gnl\|CDD\|213916 TIGR04303, GeoRSP_rSAM, GeoRSP system radical SAM/SPASM protein	Back alignment and domain information

>gnl\|CDD\|200414 TIGR04163, rSAM_cobopep, peptide-modifying radical SAM enzyme CbpB	Back alignment and domain information

>gnl\|CDD\|223803 COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|233344 TIGR01290, nifB, nitrogenase cofactor biosynthesis protein NifB	Back alignment and domain information

>gnl\|CDD\|223675 COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|211992 TIGR04269, SAM_SPASM_FxsB, radical SAM/SPASM domain, FxsB family	Back alignment and domain information

>gnl\|CDD\|225019 COG2108, COG2108, Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|188428 TIGR03913, rad_SAM_trio, Y_X(10)_GDL-associated radical SAM protein	Back alignment and domain information

>gnl\|CDD\|211973 TIGR04250, SCM_rSAM_ScmE, SynChlorMet cassette radical SAM/SPASM protein ScmE	Back alignment and domain information

>gnl\|CDD\|223890 COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>gnl\|CDD\|234483 TIGR04150, pseudo_rSAM_GG, pseudo-rSAM protein, GG-Bacteroidales system	Back alignment and domain information

>gnl\|CDD\|188457 TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	Back alignment and domain information

>gnl\|CDD\|188492 TIGR03977, rSAM_pair_HxsC, His-Xaa-Ser system radical SAM maturase HxsC	Back alignment and domain information

>gnl\|CDD\|188595 TIGR04080, rSAM_pep_cyc, KxxxW cyclic peptide radical SAM maturase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		400
PLN02951		373	Molybderin biosynthesis protein CNX2	100.0
PRK13361		329	molybdenum cofactor biosynthesis protein A; Provis	100.0
COG2896		322	MoaA Molybdenum cofactor biosynthesis enzyme [Coen	100.0
KOG2876		323	consensus Molybdenum cofactor biosynthesis pathway	100.0
TIGR02666		334	moaA molybdenum cofactor biosynthesis protein A, b	100.0
PRK00164		331	moaA molybdenum cofactor biosynthesis protein A; R	100.0
TIGR02668		302	moaA_archaeal probable molybdenum cofactor biosynt	100.0
TIGR02109		358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	100.0
PRK05301		378	pyrroloquinoline quinone biosynthesis protein PqqE	100.0
TIGR03470		318	HpnH hopanoid biosynthesis associated radical SAM	100.0
PRK13758		370	anaerobic sulfatase-maturase; Provisional	100.0
PRK13745		412	anaerobic sulfatase-maturase; Provisional	100.0
COG0641		378	AslB Arylsulfatase regulator (Fe-S oxidoreductase)	99.97
COG0535		347	Predicted Fe-S oxidoreductases [General function p	99.97
TIGR01290		442	nifB nitrogenase cofactor biosynthesis protein Nif	99.94
TIGR02493		235	PFLA pyruvate formate-lyase 1-activating enzyme. A	99.93
COG2100		414	Predicted Fe-S oxidoreductase [General function pr	99.92
TIGR02495		191	NrdG2 anaerobic ribonucleoside-triphosphate reduct	99.92
PRK13762		322	tRNA-modifying enzyme; Provisional	99.92
PRK14456		368	ribosomal RNA large subunit methyltransferase N; P	99.92
PRK11145		246	pflA pyruvate formate lyase-activating enzyme 1; P	99.91
PF04055		166	Radical_SAM: Radical SAM superfamily; InterPro: IP	99.88
PRK14468		343	ribosomal RNA large subunit methyltransferase N; P	99.88
TIGR03822		321	AblA_like_2 lysine-2,3-aminomutase-related protein	99.88
PRK14469		343	ribosomal RNA large subunit methyltransferase N; P	99.88
smart00729		216	Elp3 Elongator protein 3, MiaB family, Radical SAM	99.88
TIGR00048		355	radical SAM enzyme, Cfr family. A Staphylococcus s	99.87
PRK14470		336	ribosomal RNA large subunit methyltransferase N; P	99.87
TIGR03820		417	lys_2_3_AblA lysine-2,3-aminomutase. This model de	99.86
PRK14459		373	ribosomal RNA large subunit methyltransferase N; P	99.86
PRK14455		356	ribosomal RNA large subunit methyltransferase N; P	99.86
COG1180		260	PflA Pyruvate-formate lyase-activating enzyme [Pos	99.85
PRK14460		354	ribosomal RNA large subunit methyltransferase N; P	99.85
TIGR02494		295	PFLE_PFLC glycyl-radical enzyme activating protein	99.85
TIGR03821		321	AblA_like_1 lysine-2,3-aminomutase-related protein	99.85
PRK14463		349	ribosomal RNA large subunit methyltransferase N; P	99.85
PRK14466		345	ribosomal RNA large subunit methyltransferase N; P	99.84
COG0731		296	Fe-S oxidoreductases [Energy production and conver	99.84
PRK07094		323	biotin synthase; Provisional	99.84
TIGR00238		331	KamA family protein. Note that the E. coli homolog	99.83
PRK14453		347	chloramphenicol/florfenicol resistance protein; Pr	99.83
cd01335		204	Radical_SAM Radical SAM superfamily. Enzymes of th	99.83
PRK14467		348	ribosomal RNA large subunit methyltransferase N; P	99.82
PRK14457		345	ribosomal RNA large subunit methyltransferase N; P	99.82
TIGR03278		404	methan_mark_10 putative methanogenesis marker prot	99.81
PRK14465		342	ribosomal RNA large subunit methyltransferase N; P	99.81
PRK09240		371	thiH thiamine biosynthesis protein ThiH; Reviewed	99.81
TIGR03365		238	Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn	99.8
PRK14462		356	ribosomal RNA large subunit methyltransferase N; P	99.79
PRK14454		342	ribosomal RNA large subunit methyltransferase N; P	99.79
PRK15108		345	biotin synthase; Provisional	99.78
TIGR00433		296	bioB biotin synthetase. Catalyzes the last step of	99.78
PRK06256		336	biotin synthase; Validated	99.77
PRK10076		213	pyruvate formate lyase II activase; Provisional	99.76
TIGR02351		366	thiH thiazole biosynthesis protein ThiH. Members t	99.76
PF06463		128	Mob_synth_C: Molybdenum Cofactor Synthesis C; Inte	99.75
PRK11194		372	ribosomal RNA large subunit methyltransferase N; P	99.75
PLN02389		379	biotin synthase	99.75
PRK05660		378	HemN family oxidoreductase; Provisional	99.73
TIGR00539		360	hemN_rel putative oxygen-independent coproporphyri	99.72
COG5014		228	Predicted Fe-S oxidoreductase [General function pr	99.72
TIGR03551		343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	99.72
PRK14461		371	ribosomal RNA large subunit methyltransferase N; P	99.71
PF13353		139	Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A	99.7
PRK14464		344	ribosomal RNA large subunit methyltransferase N; P	99.7
TIGR03699		340	mena_SCO4550 menaquinone biosynthesis protein, SCO	99.7
PRK14338		459	(dimethylallyl)adenosine tRNA methylthiotransferas	99.67
PRK08446		350	coproporphyrinogen III oxidase; Provisional	99.67
PRK06267		350	hypothetical protein; Provisional	99.66
COG0820		349	Predicted Fe-S-cluster redox enzyme [General funct	99.65
PF13394		119	Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B	99.65
PRK06245		336	cofG FO synthase subunit 1; Reviewed	99.64
PRK09249		453	coproporphyrinogen III oxidase; Provisional	99.64
TIGR00538		455	hemN oxygen-independent coproporphyrinogen III oxi	99.64
PRK13347		453	coproporphyrinogen III oxidase; Provisional	99.64
PRK08208		430	coproporphyrinogen III oxidase; Validated	99.63
PRK05799		374	coproporphyrinogen III oxidase; Provisional	99.63
TIGR00423		309	radical SAM domain protein, CofH subfamily. This p	99.63
PRK08508		279	biotin synthase; Provisional	99.62
TIGR01125		430	MiaB-like tRNA modifying enzyme YliG, TIGR01125. T	99.62
PRK14862		440	rimO ribosomal protein S12 methylthiotransferase;	99.62
PRK14334		440	(dimethylallyl)adenosine tRNA methylthiotransferas	99.61
COG1964		475	Predicted Fe-S oxidoreductases [General function p	99.61
PRK08599		377	coproporphyrinogen III oxidase; Provisional	99.61
PRK07360		371	FO synthase subunit 2; Reviewed	99.59
COG1509		369	KamA Lysine 2,3-aminomutase [Amino acid transport	99.58
COG0502		335	BioB Biotin synthase and related enzymes [Coenzyme	99.58
PRK08207		488	coproporphyrinogen III oxidase; Provisional	99.58
TIGR02026		497	BchE magnesium-protoporphyrin IX monomethyl ester	99.58
TIGR03700		351	mena_SCO4494 putative menaquinone biosynthesis pro	99.56
TIGR01212		302	radical SAM protein, TIGR01212 family. This unchar	99.56
PRK05904		353	coproporphyrinogen III oxidase; Provisional	99.55
TIGR01579		414	MiaB-like-C MiaB-like tRNA modifying enzyme. This	99.55
PRK12928		290	lipoyl synthase; Provisional	99.55
TIGR00510		302	lipA lipoate synthase. The family shows strong seq	99.55
TIGR03471		472	HpnJ hopanoid biosynthesis associated radical SAM	99.54
PLN02428		349	lipoic acid synthase	99.54
PRK14331		437	(dimethylallyl)adenosine tRNA methylthiotransferas	99.53
TIGR00089		429	RNA modification enzyme, MiaB family. This subfami	99.53
PRK14339		420	(dimethylallyl)adenosine tRNA methylthiotransferas	99.52
TIGR02491		154	NrdG anaerobic ribonucleoside-triphosphate reducta	99.52
PRK05481		289	lipoyl synthase; Provisional	99.52
PRK14332		449	(dimethylallyl)adenosine tRNA methylthiotransferas	99.51
COG2108		353	Uncharacterized conserved protein related to pyruv	99.51
PRK05628		375	coproporphyrinogen III oxidase; Validated	99.51
PRK09613		469	thiH thiamine biosynthesis protein ThiH; Reviewed	99.51
TIGR03550		322	F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav	99.51
PRK14336		418	(dimethylallyl)adenosine tRNA methylthiotransferas	99.5
PRK08444		353	hypothetical protein; Provisional	99.49
PRK14340		445	(dimethylallyl)adenosine tRNA methylthiotransferas	99.49
TIGR01574		438	miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3	99.49
PRK14335		455	(dimethylallyl)adenosine tRNA methylthiotransferas	99.49
PRK14325		444	(dimethylallyl)adenosine tRNA methylthiotransferas	99.49
PRK06294		370	coproporphyrinogen III oxidase; Provisional	99.48
PRK08445		348	hypothetical protein; Provisional	99.48
PRK14328		439	(dimethylallyl)adenosine tRNA methylthiotransferas	99.47
PRK14327		509	(dimethylallyl)adenosine tRNA methylthiotransferas	99.46
TIGR01578		420	MiaB-like-B MiaB-like tRNA modifying enzyme, archa	99.46
COG0621		437	MiaB 2-methylthioadenine synthetase [Translation,	99.45
PRK14330		434	(dimethylallyl)adenosine tRNA methylthiotransferas	99.44
PRK05927		350	hypothetical protein; Provisional	99.44
PRK14337		446	(dimethylallyl)adenosine tRNA methylthiotransferas	99.44
PRK14333		448	(dimethylallyl)adenosine tRNA methylthiotransferas	99.43
PRK11121		154	nrdG anaerobic ribonucleotide reductase-activating	99.42
PRK14326		502	(dimethylallyl)adenosine tRNA methylthiotransferas	99.42
PRK07379		400	coproporphyrinogen III oxidase; Provisional	99.41
PRK14329		467	(dimethylallyl)adenosine tRNA methylthiotransferas	99.4
PRK06582		390	coproporphyrinogen III oxidase; Provisional	99.38
PRK05926		370	hypothetical protein; Provisional	99.36
COG1313		335	PflX Uncharacterized Fe-S protein PflX, homolog of	99.36
COG1060		370	ThiH Thiamine biosynthesis enzyme ThiH and related	99.36
PTZ00413		398	lipoate synthase; Provisional	99.35
PRK08898		394	coproporphyrinogen III oxidase; Provisional	99.35
PRK09058		449	coproporphyrinogen III oxidase; Provisional	99.35
PRK09057		380	coproporphyrinogen III oxidase; Provisional	99.34
TIGR02826		147	RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph	99.28
PRK09234		843	fbiC FO synthase; Reviewed	99.27
COG0602		212	NrdG Organic radical activating enzymes [Posttrans	99.24
PRK09234		843	fbiC FO synthase; Reviewed	99.24
PRK08629		433	coproporphyrinogen III oxidase; Provisional	99.21
COG0635		416	HemN Coproporphyrinogen III oxidase and related Fe	99.2
TIGR01210		313	conserved hypothetical protein TIGR01210. This fam	99.16
COG0320		306	LipA Lipoate synthase [Coenzyme metabolism]	99.11
COG1856		275	Uncharacterized homolog of biotin synthetase [Func	99.07
KOG2900		380	consensus Biotin synthase [Coenzyme transport and	99.02
COG1533		297	SplB DNA repair photolyase [DNA replication, recom	99.01
PRK00955		620	hypothetical protein; Provisional	98.96
TIGR01211		522	ELP3 histone acetyltransferase, ELP3 family. The S	98.95
COG1625		414	Fe-S oxidoreductase, related to NifB/MoaA family [	98.94
COG1242		312	Predicted Fe-S oxidoreductase [General function pr	98.92
COG1032		490	Fe-S oxidoreductase [Energy production and convers	98.86
PRK01254		707	hypothetical protein; Provisional	98.83
cd03174		265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	98.77
COG2516		339	Biotin synthase-related enzyme [General function p	98.72
TIGR03279		433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.61
COG1243		515	ELP3 Histone acetyltransferase [Transcription / Ch	98.42
PF13186		64	SPASM: Iron-sulfur cluster-binding domain	98.13
KOG2672		360	consensus Lipoate synthase [Coenzyme transport and	97.87
COG1031		560	Uncharacterized Fe-S oxidoreductase [Energy produc	97.84
COG1244		358	Predicted Fe-S oxidoreductase [General function pr	97.79
KOG1160		601	consensus Fe-S oxidoreductase [Energy production a	97.54
PRK11858		378	aksA trans-homoaconitate synthase; Reviewed	97.52
cd07939		259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	97.4
cd07948		262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	97.38
TIGR02090		363	LEU1_arch isopropylmalate/citramalate/homocitrate	97.38
COG4277		404	Predicted DNA-binding protein with the Helix-hairp	97.15
TIGR02660		365	nifV_homocitr homocitrate synthase NifV. This fami	96.92
KOG4355		547	consensus Predicted Fe-S oxidoreductase [General f	96.71
cd07941		273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	96.64
cd07940		268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	96.62
cd07943		263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	96.58
PRK08195		337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	96.57
TIGR03217		333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	96.52
PRK09389		488	(R)-citramalate synthase; Provisional	96.35
PF00682		237	HMGL-like: HMGL-like of this family is not conserv	96.29
cd07938		274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	96.26
cd07944		266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	96.03
PLN02746		347	hydroxymethylglutaryl-CoA lyase	96.01
PRK14040		593	oxaloacetate decarboxylase; Provisional	95.87
PRK12331		448	oxaloacetate decarboxylase; Provisional	95.82
PRK00915		513	2-isopropylmalate synthase; Validated	95.61
KOG2535		554	consensus RNA polymerase II elongator complex, sub	95.6
PRK14041		467	oxaloacetate decarboxylase; Provisional	95.43
KOG2492		552	consensus CDK5 activator-binding protein [Signal t	95.43
PRK05692		287	hydroxymethylglutaryl-CoA lyase; Provisional	95.25
TIGR01108		582	oadA oxaloacetate decarboxylase alpha subunit. Thi	95.22
PRK09282		592	pyruvate carboxylase subunit B; Validated	95.05
cd07945		280	DRE_TIM_CMS Leptospira interrogans citramalate syn	94.92
TIGR00977		526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	94.7
cd07937		275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	94.4
PRK12344		524	putative alpha-isopropylmalate/homocitrate synthas	94.33
PLN02321		632	2-isopropylmalate synthase	94.21
PLN03228		503	methylthioalkylmalate synthase; Provisional	93.91
PRK12330		499	oxaloacetate decarboxylase; Provisional	93.8
COG0119		409	LeuA Isopropylmalate/homocitrate/citramalate synth	92.69
TIGR03849		237	arch_ComA phosphosulfolactate synthase. This model	92.59
PRK15452		443	putative protease; Provisional	91.67
TIGR00973		494	leuA_bact 2-isopropylmalate synthase, bacterial ty	91.49
cd07947		279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	91.16
PRK15447		301	putative protease; Provisional	90.51
PRK12581		468	oxaloacetate decarboxylase; Provisional	90.34
cd07942		284	DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and	89.39
PF02679		244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	88.45
PRK08091		228	ribulose-phosphate 3-epimerase; Validated	87.79
PF05853		272	DUF849: Prokaryotic protein of unknown function (D	87.12
COG0826		347	Collagenase and related proteases [Posttranslation	86.41
TIGR01496		257	DHPS dihydropteroate synthase. This model represen	85.06
cd00953		279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	84.7
cd00952		309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	84.53
cd01299		342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	84.14
PRK14847		333	hypothetical protein; Provisional	83.32
COG5016		472	Pyruvate/oxaloacetate carboxyltransferase [Energy	83.18
COG2875		254	CobM Precorrin-4 methylase [Coenzyme metabolism]	82.97
PTZ00445		219	p36-lilke protein; Provisional	82.61
PRK14042		596	pyruvate carboxylase subunit B; Provisional	82.58
COG0329		299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	82.5
PLN02417		280	dihydrodipicolinate synthase	82.2
PRK03170		292	dihydrodipicolinate synthase; Provisional	82.15
TIGR00620		199	sporelyase spore photoproduct lyase. This family i	80.77
PRK12999		1146	pyruvate carboxylase; Reviewed	80.75
cd07939		259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	80.72
cd00408		281	DHDPS-like Dihydrodipicolinate synthase family. A	80.33
COG0036		220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	80.15

>PLN02951 Molybderin biosynthesis protein CNX2	Back alignment and domain information

Probab=100.00  E-value=2.8e-57  Score=436.15  Aligned_cols=372  Identities=78%  Similarity=1.261  Sum_probs=316.7

Q ss_pred             hhhhhhcccCCCCCcccccccccCccccccCCCCccccccccccccc-ccccccCCCCCccccccCCCCCchhhhhcCCC
Q 015808            5 VSKITDWHLGFRNSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVANMN-YATSSANLSEDPLKDKDNHRVSDMLIDSFGRM   83 (400)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (400)
                      +|+|++..++++.+++....  ++.                   .-+ ++++-+..+.+++..   .|++.++.|.||+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~gr~   56 (373)
T PLN02951          1 LSKLADLRLGFRSSSFQLQE--PGS-------------------SIFSASSSYAADQVDPEAS---NPVSDMLVDSFGRR   56 (373)
T ss_pred             CchhhhhhhcccchhhhhhC--ccc-------------------ccccccccccccccccccC---CCCCcccccCCCCc
Confidence            57889988888876643321  110                   001 112223334455555   89999999999999


Q ss_pred             ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCC
Q 015808           84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL  163 (400)
Q Consensus        84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~  163 (400)
                      +.|+.|++|.+||++|.||+...+.........|+.+++.++++.+.+.|+..|.|+|||||+++++.++++++++..|+
T Consensus        57 ~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~gi  136 (373)
T PLN02951         57 HNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKGL  136 (373)
T ss_pred             ccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcCCC
Confidence            99999999999999999999875433333346699999999999999999999999999999999999999999886677


Q ss_pred             ceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhH
Q 015808          164 KTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE  243 (400)
Q Consensus       164 ~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~e  243 (400)
                      ..+.|+|||+++++.+..|.++|++.|+||+|+.+++.|+.+++.+++++++++|+.+.+.|+.++.+++|+++|.|+++
T Consensus       137 ~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~E  216 (373)
T PLN02951        137 KTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDE  216 (373)
T ss_pred             ceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHH
Confidence            56899999999998899999999999999999999999999998888999999999999999756999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCceEEEEcCCC
Q 015808          244 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMT  323 (400)
Q Consensus       244 l~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (400)
                      +.++++++++.|+.+++++++|+++..|.....++++++++.+.+.++.+.........++.+|.++++.+.++++.+++
T Consensus       217 i~~li~~a~~~gi~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y~~~~~~g~ig~I~~~s  296 (373)
T PLN02951        217 ICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNFRIDGHCGSVSFITSMT  296 (373)
T ss_pred             HHHHHHHHHhCCCeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEEEECCCCeEEEEEcCCc
Confidence            99999999999999999999999988877777889999999999987645544433456788898999999999999999


Q ss_pred             cCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhccccccccccccccccccC
Q 015808          324 EHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG  400 (400)
Q Consensus       324 ~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~~~~~~~~~~~~~~~~~~~  400 (400)
                      ..||++|+++.|++||+++||.|.+.+++|...++++..++.|.+.|..++.+|+..|..+.+-.....|.|..|||
T Consensus       297 ~~FC~~CnRlRltadG~l~~CL~~~~~~dl~~~l~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~m~~iGG  373 (373)
T PLN02951        297 EHFCAGCNRLRLLADGNLKVCLFGPSEVSLRDALRSGADDDELREIIGAAVKRKKAAHAGMFDLAKTANRPMIHIGG  373 (373)
T ss_pred             ccccccCCeEEEccCCcEEecCCCCCCcChHHHHhcCCCHHHHHHHHHHHHHhccccccccccccCCCcccccccCC
Confidence            99999999999999999999999999999999999988999999999999999999997543211122589999999

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional	Back alignment and domain information

>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]	Back alignment and domain information

>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]	Back alignment and domain information

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial	Back alignment and domain information

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed	Back alignment and domain information

>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal	Back alignment and domain information

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E	Back alignment and domain information

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional	Back alignment and domain information

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH	Back alignment and domain information

>PRK13758 anaerobic sulfatase-maturase; Provisional	Back alignment and domain information

>PRK13745 anaerobic sulfatase-maturase; Provisional	Back alignment and domain information

>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]	Back alignment and domain information

>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]	Back alignment and domain information

>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB	Back alignment and domain information

>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme	Back alignment and domain information

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein	Back alignment and domain information

>PRK13762 tRNA-modifying enzyme; Provisional	Back alignment and domain information

>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional	Back alignment and domain information

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation	Back alignment and domain information

>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein	Back alignment and domain information

>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM	Back alignment and domain information

>TIGR00048 radical SAM enzyme, Cfr family	Back alignment and domain information

>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase	Back alignment and domain information

>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family	Back alignment and domain information

>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein	Back alignment and domain information

>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>COG0731 Fe-S oxidoreductases [Energy production and conversion]	Back alignment and domain information

>PRK07094 biotin synthase; Provisional	Back alignment and domain information

>TIGR00238 KamA family protein	Back alignment and domain information

>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional	Back alignment and domain information

>cd01335 Radical_SAM Radical SAM superfamily	Back alignment and domain information

>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10	Back alignment and domain information

>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed	Back alignment and domain information

>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	Back alignment and domain information

>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK15108 biotin synthase; Provisional	Back alignment and domain information

>TIGR00433 bioB biotin synthetase	Back alignment and domain information

>PRK06256 biotin synthase; Validated	Back alignment and domain information

>PRK10076 pyruvate formate lyase II activase; Provisional	Back alignment and domain information

>TIGR02351 thiH thiazole biosynthesis protein ThiH	Back alignment and domain information

>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT)	Back alignment and domain information

>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PLN02389 biotin synthase	Back alignment and domain information

>PRK05660 HemN family oxidoreductase; Provisional	Back alignment and domain information

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase	Back alignment and domain information

>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit	Back alignment and domain information

>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A	Back alignment and domain information

>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family	Back alignment and domain information

>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK08446 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK06267 hypothetical protein; Provisional	Back alignment and domain information

>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]	Back alignment and domain information

>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A	Back alignment and domain information

>PRK06245 cofG FO synthase subunit 1; Reviewed	Back alignment and domain information

>PRK09249 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase	Back alignment and domain information

>PRK13347 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK08208 coproporphyrinogen III oxidase; Validated	Back alignment and domain information

>PRK05799 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>TIGR00423 radical SAM domain protein, CofH subfamily	Back alignment and domain information

>PRK08508 biotin synthase; Provisional	Back alignment and domain information

>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125	Back alignment and domain information

>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional	Back alignment and domain information

>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]	Back alignment and domain information

>PRK08599 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK07360 FO synthase subunit 2; Reviewed	Back alignment and domain information

>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]	Back alignment and domain information

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]	Back alignment and domain information

>PRK08207 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase	Back alignment and domain information

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family	Back alignment and domain information

>TIGR01212 radical SAM protein, TIGR01212 family	Back alignment and domain information

>PRK05904 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme	Back alignment and domain information

>PRK12928 lipoyl synthase; Provisional	Back alignment and domain information

>TIGR00510 lipA lipoate synthase	Back alignment and domain information

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ	Back alignment and domain information

>PLN02428 lipoic acid synthase	Back alignment and domain information

>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR00089 RNA modification enzyme, MiaB family	Back alignment and domain information

>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein	Back alignment and domain information

>PRK05481 lipoyl synthase; Provisional	Back alignment and domain information

>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]	Back alignment and domain information

>PRK05628 coproporphyrinogen III oxidase; Validated	Back alignment and domain information

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed	Back alignment and domain information

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit	Back alignment and domain information

>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK08444 hypothetical protein; Provisional	Back alignment and domain information

>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB	Back alignment and domain information

>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK06294 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK08445 hypothetical protein; Provisional	Back alignment and domain information

>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type	Back alignment and domain information

>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK05927 hypothetical protein; Provisional	Back alignment and domain information

>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional	Back alignment and domain information

>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK07379 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK06582 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK05926 hypothetical protein; Provisional	Back alignment and domain information

>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]	Back alignment and domain information

>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>PTZ00413 lipoate synthase; Provisional	Back alignment and domain information

>PRK08898 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK09058 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK09057 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein	Back alignment and domain information

>PRK09234 fbiC FO synthase; Reviewed	Back alignment and domain information

>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09234 fbiC FO synthase; Reviewed	Back alignment and domain information

>PRK08629 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]	Back alignment and domain information

>TIGR01210 conserved hypothetical protein TIGR01210	Back alignment and domain information

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]	Back alignment and domain information

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]	Back alignment and domain information

>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]	Back alignment and domain information

>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK00955 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family	Back alignment and domain information

>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]	Back alignment and domain information

>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>COG1032 Fe-S oxidoreductase [Energy production and conversion]	Back alignment and domain information

>PRK01254 hypothetical protein; Provisional	Back alignment and domain information

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily	Back alignment and domain information

>COG2516 Biotin synthase-related enzyme [General function prediction only]	Back alignment and domain information

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase	Back alignment and domain information

>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>PF13186 SPASM: Iron-sulfur cluster-binding domain	Back alignment and domain information

>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]	Back alignment and domain information

>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]	Back alignment and domain information

>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]	Back alignment and domain information

>PRK11858 aksA trans-homoaconitate synthase; Reviewed	Back alignment and domain information

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases	Back alignment and domain information

>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]	Back alignment and domain information

>TIGR02660 nifV_homocitr homocitrate synthase NifV	Back alignment and domain information

>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	Back alignment and domain information

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase	Back alignment and domain information

>PRK09389 (R)-citramalate synthase; Provisional	Back alignment and domain information

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members	Back alignment and domain information

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	Back alignment and domain information

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PLN02746 hydroxymethylglutaryl-CoA lyase	Back alignment and domain information

>PRK14040 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PRK12331 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PRK00915 2-isopropylmalate synthase; Validated	Back alignment and domain information

>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PRK14041 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional	Back alignment and domain information

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit	Back alignment and domain information

>PRK09282 pyruvate carboxylase subunit B; Validated	Back alignment and domain information

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein	Back alignment and domain information

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain	Back alignment and domain information

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	Back alignment and domain information

>PLN02321 2-isopropylmalate synthase	Back alignment and domain information

>PLN03228 methylthioalkylmalate synthase; Provisional	Back alignment and domain information

>PRK12330 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03849 arch_ComA phosphosulfolactate synthase	Back alignment and domain information

>PRK15452 putative protease; Provisional	Back alignment and domain information

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type	Back alignment and domain information

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>PRK15447 putative protease; Provisional	Back alignment and domain information

>PRK12581 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []	Back alignment and domain information

>PRK08091 ribulose-phosphate 3-epimerase; Validated	Back alignment and domain information

>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function	Back alignment and domain information

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01496 DHPS dihydropteroate synthase	Back alignment and domain information

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea	Back alignment and domain information

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)	Back alignment and domain information

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>PRK14847 hypothetical protein; Provisional	Back alignment and domain information

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]	Back alignment and domain information

>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]	Back alignment and domain information

>PTZ00445 p36-lilke protein; Provisional	Back alignment and domain information

>PRK14042 pyruvate carboxylase subunit B; Provisional	Back alignment and domain information

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PLN02417 dihydrodipicolinate synthase	Back alignment and domain information

>PRK03170 dihydrodipicolinate synthase; Provisional	Back alignment and domain information

>TIGR00620 sporelyase spore photoproduct lyase	Back alignment and domain information

>PRK12999 pyruvate carboxylase; Reviewed	Back alignment and domain information

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>cd00408 DHDPS-like Dihydrodipicolinate synthase family	Back alignment and domain information

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		400
1tv7_A		340	Structure Of The S-adenosylmethionine Dependent Enz		3e-52
2fb2_A		340	Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT		9e-50

>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme Moaa Length = 340

Back alignment and structure

Iteration: 1

Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 187/335 (55%), Gaps = 13/335 (3%) Query: 78 DSFGRMHTYLRISLTERCNLRCHYCMPPE--GVDLT--PKPQLLSLNEILRLAYLFVTSG 133 D GR LR+S+T+RCN RC YCMP E G D PK +LL+ +E+ R+A ++ G Sbjct: 7 DKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELG 66 Query: 134 VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193 V KIR+TGGEP +R+D++ L+++ G++ + +TTNGL L + KL ++GL +N+S Sbjct: 67 VKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVS 126 Query: 194 LDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 252 LD + F+ + R ++E I+ A +G N VKVN V+ +G NDD+I +E + Sbjct: 127 LDAIDDTLFQSINNRNIKATTILEQIDYATSIGLN-VKVNVVIQKGINDDQIIPMLEYFK 185 Query: 253 DRPINIRFIEFMPF-DGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDG 311 D+ I IRFIEFM + N W+ K+V EML + + F + E AK ++ Sbjct: 186 DKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKD 245 Query: 312 HHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSE-VSLRDPLRQNASDDELREII 370 + ITS+++ FC+ C R RL +DG F CLF + +++ +R +D+EL+E Sbjct: 246 NGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQF 305 Query: 371 GAAVKRKKAAHAGMFDIAKTANRP-----MIHIGG 400 A + + ++ ANR M +IGG Sbjct: 306 KALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG 340

PyMOL of 1tv7

>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT Length = 340

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		400
1tv8_A		340	MOAA, molybdenum cofactor biosynthesis protein A;	1e-175
2z2u_A		311	UPF0026 protein MJ0257; metal binding protein; 2.4	1e-19
2yx0_A		342	Radical SAM enzyme; predicted tRNA modification en	3e-16
3c8f_A		245	Pyruvate formate-lyase 1-activating enzyme; adoMet	2e-10
3can_A		182	Pyruvate-formate lyase-activating enzyme; structur	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Length = 340	Back alignment and structure

 Score =  492 bits (1268), Expect = e-175
 Identities = 117/341 (34%), Positives = 186/341 (54%), Gaps = 13/341 (3%)

Query: 72  VSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPE----GVDLTPKPQLLSLNEILRLAY 127
           + + + D  GR    LR+S+T+RCN RC YCMP E         PK +LL+ +E+ R+A 
Sbjct: 1   MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAK 60

Query: 128 LFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 187
           ++   GV KIR+TGGEP +R+D++     L+++ G++ + +TTNGL L +   KL ++GL
Sbjct: 61  VYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGL 120

Query: 188 TSVNISLDTLVPAKFEFLTRRKGH-EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICD 246
             +N+SLD +    F+ +  R      ++E I+ A  +G   VKVN V+ +G NDD+I  
Sbjct: 121 RRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NVKVNVVIQKGINDDQIIP 179

Query: 247 FVELTRDRPINIRFIEFMPFD-GNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAK 305
            +E  +D+ I IRFIEFM     N W+  K+V   EML  + + F        +  E AK
Sbjct: 180 MLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAK 239

Query: 306 NFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSE-VSLRDPLRQNASDD 364
            ++   +      ITS+++ FC+ C R RL +DG F  CLF   +  +++  +R   +D+
Sbjct: 240 YYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDE 299

Query: 365 ELREIIGAAVKRKKAAHAGMFDIAKTANRP-----MIHIGG 400
           EL+E   A  + +   ++        ANR      M +IGG
Sbjct: 300 ELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG 340

PyMOL of 1tv8

>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Length = 311	Back alignment and structure

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Length = 342	Back alignment and structure

>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Length = 245	Back alignment and structure

>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Length = 182	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		400
1tv8_A		340	MOAA, molybdenum cofactor biosynthesis protein A;	100.0
3c8f_A		245	Pyruvate formate-lyase 1-activating enzyme; adoMet	99.93
2yx0_A		342	Radical SAM enzyme; predicted tRNA modification en	99.92
2a5h_A		416	L-lysine 2,3-aminomutase; radical SAM, four-iron-f	99.92
2z2u_A		311	UPF0026 protein MJ0257; metal binding protein; 2.4	99.91
3iix_A		348	Biotin synthetase, putative; adoMet radical, SAM r	99.9
3rfa_A		404	Ribosomal RNA large subunit methyltransferase N; r	99.89
3t7v_A		350	Methylornithine synthase PYLB; TIM-barrel fold, mu	99.85
1r30_A		369	Biotin synthase; SAM radical protein, TIM barrel,	99.84
3can_A		182	Pyruvate-formate lyase-activating enzyme; structur	99.83
2qgq_A		304	Protein TM_1862; alpha-beta protein, structural ge	99.78
1olt_A		457	Oxygen-independent coproporphyrinogen III oxidase;	99.64
4fhd_A		368	Spore photoproduct lyase; partial TIM-barrel, DNA	98.48
2cw6_A		298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	97.85
1ydn_A		295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	97.83
2ftp_A		302	Hydroxymethylglutaryl-COA lyase; structural genomi	96.59
3ivs_A		423	Homocitrate synthase, mitochondrial; TIM barrel, m	96.5
1ydo_A		307	HMG-COA lyase; TIM-barrel protein, structural geno	96.32
2ztj_A		382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	96.0
3ble_A		337	Citramalate synthase from leptospira interrogans;	95.77
3ewb_X		293	2-isopropylmalate synthase; LEUA, structural genom	95.37
3rmj_A		370	2-isopropylmalate synthase; LEUA, truncation, neis	94.65
2nx9_A		464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	94.18
1rqb_A		539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	94.01
1nvm_A		345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	93.92
3eeg_A		325	2-isopropylmalate synthase; 11106D, beta barrel, P	92.7
1qwg_A		251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	90.41
2y7e_A		282	3-keto-5-aminohexanoate cleavage enzyme; lyase, al	89.96
1u83_A		276	Phosphosulfolactate synthase; structural genomics,	89.75
3lot_A		314	Uncharacterized protein; protein of unknown functi	89.65
3chv_A		284	Prokaryotic domain of unknown function (DUF849) W	87.97
3e02_A		311	Uncharacterized protein DUF849; structural genomic	87.79
3e49_A		311	Uncharacterized protein DUF849 with A TIM barrel;	87.06
1ydn_A		295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	85.5
3c6c_A		316	3-keto-5-aminohexanoate cleavage enzyme; DUF849 fa	85.37
2ftp_A		302	Hydroxymethylglutaryl-COA lyase; structural genomi	84.79
3no5_A		275	Uncharacterized protein; PFAM DUF849 domain contai	84.0
3dxi_A		320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	82.46
3dz1_A		313	Dihydrodipicolinate synthase; lysine biosynthesis,	81.21
2dqw_A		294	Dihydropteroate synthase; dimer, structural genomi	80.87
2d73_A		738	Alpha-glucosidase SUSB; glycoside hydrolase family	80.48
2nuw_A		288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	80.34
3flu_A		297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	80.19
1xky_A		301	Dihydrodipicolinate synthase; TIM barrel, , lysine	80.04

>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*	Back alignment and structure

Probab=100.00  E-value=1.2e-51  Score=395.89  Aligned_cols=325  Identities=35%  Similarity=0.613  Sum_probs=272.9

Q ss_pred             hhhhhcCCCccEEEEEcCcccCCCCCCCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhH
Q 015808           75 MLIDSFGRMHTYLRISLTERCNLRCHYCMPPE----GVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDI  150 (400)
Q Consensus        75 ~~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~----~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l  150 (400)
                      .+.|.||+.+.++.|.+|.+||++|.||+...    +.........|+.+++.++++.+.+.|+..|.|+|||||+++++
T Consensus         4 ~l~d~~gr~~~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~~~l   83 (340)
T 1tv8_A            4 QIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDL   83 (340)
T ss_dssp             CCBCTTSCBCCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTTH
T ss_pred             cCcCCCCCccCeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccchhhH
Confidence            37899999999999999999999999999865    22222345679999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCC-CHHHHHHHHHHHHHcCCCcE
Q 015808          151 EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPV  229 (400)
Q Consensus       151 ~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v  229 (400)
                      .++++++++..++..+.|+|||+++++.+..|.++|++.|+||+||.+++.|+.+++.+ +|++++++|+.+++.|+ ++
T Consensus        84 ~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~-~v  162 (340)
T 1tv8_A           84 DVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NV  162 (340)
T ss_dssp             HHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC-EE
T ss_pred             HHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCC-CE
Confidence            99999999865554789999999998888999999999999999999999999999988 89999999999999999 99


Q ss_pred             EEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCC-CCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEE
Q 015808          230 KVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGN-VWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFK  308 (400)
Q Consensus       230 ~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~-~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~  308 (400)
                      .++++++++.|.+++.++++++.++|+++.++.++|+++. .|.....++.+++++.+.+.+................|.
T Consensus       163 ~i~~vv~~g~n~~ei~~~~~~~~~~g~~~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~  242 (340)
T 1tv8_A          163 KVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYR  242 (340)
T ss_dssp             EEEEEECTTTTGGGHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHSCEEEECCSSTTCSSEEEE
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeeEcCCCccchhhcCCCHHHHHHHHHhhCCccccccCCCCCCCeEEE
Confidence            9999999988999999999999999999999999999764 455556788899999999887533321222344566778


Q ss_pred             eCCCCceEEEEcCCCcCcCCCCCeEEEccCCeEEeccCCC-CCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhcccccc
Q 015808          309 IDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGP-SEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDI  387 (400)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~C~~~~~l~I~~dG~v~pC~~~~-~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~~~~~~  387 (400)
                      ++++.+.++++.+.+..+|++|+++.|++||+||||.+.. .+++|+++++++..+++|.++|..++.+|+..|...-+-
T Consensus       243 ~~~~~~~~g~i~~~~~~~C~~c~~~~i~~dG~v~pC~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~  322 (340)
T 1tv8_A          243 HKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTA  322 (340)
T ss_dssp             ETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEESSSCCSSCCCCHHHHHHTCCCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             ECCCCeEEEEECCCCCccccCCCcEEECCCccEEeCCCCCCCCcchHHHHhCCCCHHHHHHHHHHHHHhCchhcCccccc
Confidence            8877788999999999999889999999999999999988 999999999999999999999999999999999841110


Q ss_pred             c-----cccccccccccC
Q 015808          388 A-----KTANRPMIHIGG  400 (400)
Q Consensus       388 ~-----~~~~~~~~~~~~  400 (400)
                      .     ....|+|+.|||
T Consensus       323 ~~~~~~~~~~~~m~~igg  340 (340)
T 1tv8_A          323 QTVANRQRKKINMNYIGG  340 (340)
T ss_dssp             HHHHHTC-----------
T ss_pred             ccccccCCCccccccCCC
Confidence            0     134789999999

PyMOL of 1tv8

>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*	Back alignment and structure

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}	Back alignment and structure

>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}	Back alignment and structure

>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}	Back alignment and structure

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*	Back alignment and structure

>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*	Back alignment and structure

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}	Back alignment and structure

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1	Back alignment and structure

>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}	Back alignment and structure

>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2	Back alignment and structure

>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*	Back alignment and structure

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*	Back alignment and structure

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}	Back alignment and structure

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*	Back alignment and structure

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}	Back alignment and structure

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*	Back alignment and structure

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*	Back alignment and structure

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}	Back alignment and structure

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}	Back alignment and structure

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}	Back alignment and structure

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*	Back alignment and structure

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5	Back alignment and structure

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1	Back alignment and structure

>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A	Back alignment and structure

>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1	Back alignment and structure

>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}	Back alignment and structure

>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A	Back alignment and structure

>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}	Back alignment and structure

>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}	Back alignment and structure

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}	Back alignment and structure

>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}	Back alignment and structure

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}	Back alignment and structure

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0	Back alignment and structure

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*	Back alignment and structure

>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*	Back alignment and structure

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A	Back alignment and structure

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0	Back alignment and structure

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		400
d1tv8a_		327	c.1.28.3 (A:) Molybdenum cofactor biosynthesis pro	4e-68
d1r30a_		312	c.1.28.1 (A:) Biotin synthase {Escherichia coli [T	4e-04

>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Length = 327	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

 Score =  216 bits (551), Expect = 4e-68
 Identities = 109/326 (33%), Positives = 174/326 (53%), Gaps = 6/326 (1%)

Query: 74  DMLIDSFGRMHTYLRISLTERCNLRCHYCMPPE----GVDLTPKPQLLSLNEILRLAYLF 129
           + + D  GR    LR+S+T+RCN RC YCMP E         PK +LL+ +E+ R+A ++
Sbjct: 1   EQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVY 60

Query: 130 VTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 189
              GV KIR+TGGEP +R+D++     L+++ G++ + +TTNGL L +   KL ++GL  
Sbjct: 61  AELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRR 120

Query: 190 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249
           +N+SLD +    F+ +  R      +             VKVN V+ +G NDD+I   +E
Sbjct: 121 INVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLE 180

Query: 250 LTRDRPINIRFIEFMPF-DGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFK 308
             +D+ I IRFIEFM   + N W+  K+V   EML  + + F        +  E AK ++
Sbjct: 181 YFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYR 240

Query: 309 IDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSE-VSLRDPLRQNASDDELR 367
              +      ITS+++ FC+ C R RL +DG F  CLF   +  +++  +R   +D+EL+
Sbjct: 241 HKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELK 300

Query: 368 EIIGAAVKRKKAAHAGMFDIAKTANR 393
           E   A  + +   ++        ANR
Sbjct: 301 EQFKALWQIRDDRYSDERTAQTVANR 326

PyMOL of d1tv8a_

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		400
d1tv8a_		327	Molybdenum cofactor biosynthesis protein A MoaA {S	100.0
d1r30a_		312	Biotin synthase {Escherichia coli [TaxId: 562]}	99.61
d1olta_		441	Oxygen-independent coproporphyrinogen III oxidase	99.26
d1qwga_		251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	90.37
d1nvma2		289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	86.76
d1u83a_		249	(2r)-phospho-3-sulfolactate synthase ComA {Bacillu	85.92
d1xkya1		292	Dihydrodipicolinate synthase {Bacillus anthracis [	80.28

>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.4e-40  Score=311.92  Aligned_cols=303  Identities=35%  Similarity=0.624  Sum_probs=243.6

Q ss_pred             hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHH
Q 015808           76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVD----LTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIE  151 (400)
Q Consensus        76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~----~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~  151 (400)
                      ..|+|+|.+.+|.|++|++||++|+||+......    ..+....|+.|++.++++++.+.|+..|.|+||||++++++.
T Consensus         3 ~~~~~~r~~~~l~ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~GGEp~l~~~~~   82 (327)
T d1tv8a_           3 IKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLD   82 (327)
T ss_dssp             CBCTTSCBCCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTTHH
T ss_pred             CccCCCCccCcEEEEeccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCCCcccccccHH
Confidence            5799999999999999999999999998654221    122345699999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCceEEEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCC-HHHHHHHHHHHHHcCCCcE
Q 015808          152 EACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPV  229 (400)
Q Consensus       152 ~~i~~~~~~~g~~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~-~~~v~~~i~~l~~~g~~~v  229 (400)
                      +++.++.+..+. ...++|||+++ ++.+..|+++|++.|+||+||.++++|+.++|.++ |++++++++.+.++|+ ++
T Consensus        83 e~i~~~~~~~~~-~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~-~~  160 (327)
T d1tv8a_          83 VLIAKLNQIDGI-EDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NV  160 (327)
T ss_dssp             HHHHHHTTCTTC-CEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC-EE
T ss_pred             HHHHHHhhhccc-cccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCC-Cc
Confidence            998888876555 45666777777 46679999999999999999999999999999765 9999999999999999 99


Q ss_pred             EEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeecCCC-CCCcccCCCCHHHHHHHHHHhCCCceecc-CCCCCCceeE
Q 015808          230 KVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQ-DHPTETAKNF  307 (400)
Q Consensus       230 ~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~-~~~~~~~~~~~~e~~~~i~~~~~~l~~~~-~~~~~~~~~~  307 (400)
                      .++++++++.|.+++.++++++.++++++.++.+++... .........+.++........+. +.... .........+
T Consensus       161 ~~~~~v~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~  239 (327)
T d1tv8a_         161 KVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFE-IDPVEPKYFGEVAKYY  239 (327)
T ss_dssp             EEEEEECTTTTGGGHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHSC-EEEECCSSTTCSSEEE
T ss_pred             ceeEEEecCccccccHHHHHHHHhhccccceeeeecccCcccccccccccHHHHHHHHHHhcc-cccccccccccchhhe
Confidence            999999988899999999999999999888887766543 33444455667776666666553 43332 2333444455


Q ss_pred             EeCCCCceEEEEcCCCcCcCCCCCeEEEccCCeEEeccCCC-CCCCchHHhhcCCCHHHHHHHHHHHHHhchhhh
Q 015808          308 KIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGP-SEVSLRDPLRQNASDDELREIIGAAVKRKKAAH  381 (400)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~C~~~~~l~I~~dG~v~pC~~~~-~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~  381 (400)
                      .........+........+|++|+.+.|+|||+|+||.|.. ..+.++++++++...+.|.+.|...+..|..+|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~c~~~~~~~I~~dG~v~PC~~~~~~~~n~~~~l~~~~~~~~l~~~~~~iw~~r~~~~  314 (327)
T d1tv8a_         240 RHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRY  314 (327)
T ss_dssp             EETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEESSSCCSSCCCCHHHHHHTCCCHHHHHHHHHHHHHTCCCCH
T ss_pred             eccccCcccceeccccccccCccCeEEEecCceEEeCCCCCcCCcCHHHHHhcCCCHHHHHHHHHHHHHcCCccC
Confidence            55555566777777777888899999999999999998754 568899999999998888887776655555444

PyMOL of d1tv8a_

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}	Back information, alignment and structure

>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure