Citrus Sinensis ID: 015810

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
cccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEccccccHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccccEEEccccccccccccEEEEEEEEccccccEEEEEEccccccccccccEEEEEEccEEccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEccccEEEccccccEEEEcccccccccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
ccHHHHHHHHHcccccccccccEEEEcccccccccccHHcccccHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEcccccccccccccEEEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccEcccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MSFKSILQDVKgelgsisrkgfdvrfgygrsrshrvvqDCSVVVDAFKqscwanmppeLLRDVLLRIEasettwpprknvvacAGVCRSWREIMKEIVKTLEVsgkltfpislkqpgprgsllQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAArkcrrptctdyiislncddvskgsstyigrlrsnflgtkftiydghppnaearVTKCRSTRqvnmkqvspkllagnyHVAHISYELNvlgsrgprrmqcvmdaipassiepggvaptqtefhhsgldsfpsipffrsksiraenfqnDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASlengvagqehENVILQFgkvgkdvftmdyQYPISAFQAFAICLSSfdtkiace
msfksilqdvkgelgsisrkgfDVRFGYGrsrshrvvqdCSVVVDAFKQSCWANMPPELLRDVLLRIEasettwpprknvvacAGVCRSWREIMKEIVKTLevsgkltfpislkqpgprgSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDyiislncddvskgSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
**************GSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP*****RVTKC*****VNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAI************************FPSIPFFR*************KEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKI***
*SFKSILQDVKGELGS*************************************NMPPELLRDVLL***************************************GKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP****************************NYHVAHISYELNVLGSRGPRRMQCVM*************************************************EGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL**SL***VAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
*************LGSISRKGFDVR*********************FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP*****************MKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPAS******************************************KEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIAC*
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MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query400 2.2.26 [Sep-21-2011]
Q8VY21406 Tubby-like F-box protein yes no 1.0 0.985 0.815 0.0
Q10LG8403 Tubby-like F-box protein yes no 1.0 0.992 0.682 1e-163
Q8H485406 Tubby-like F-box protein yes no 1.0 0.985 0.647 1e-156
Q2QXB2445 Tubby-like F-box protein no no 1.0 0.898 0.537 1e-130
Q75HX5445 Tubby-like F-box protein no no 1.0 0.898 0.525 1e-128
Q53PP5440 Tubby-like F-box protein no no 0.997 0.906 0.523 1e-126
Q9SQU1380 Tubby-like F-box protein no no 0.93 0.978 0.571 1e-123
Q6NPQ1389 Tubby-like F-box protein no no 0.91 0.935 0.590 1e-122
Q944S3429 Tubby-like F-box protein no no 0.99 0.923 0.512 1e-121
Q69U54451 Tubby-like F-box protein no no 0.99 0.878 0.516 1e-121
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function desciption
 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/406 (81%), Positives = 366/406 (90%), Gaps = 6/406 (1%)

Query: 1   MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELL 60
           MSFKS++QD++GELGSISRKGFDVRFGYGRSRS RVVQD SV VDAFKQSCWA+MPPELL
Sbjct: 1   MSFKSLIQDMRGELGSISRKGFDVRFGYGRSRSQRVVQDTSVPVDAFKQSCWASMPPELL 60

Query: 61  RDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRG 120
           RDVL+RIE SE TWP RKNVV+CAGVCR+WREI+KEIV+  E+S KLTFPISLKQPGPRG
Sbjct: 61  RDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRG 120

Query: 121 SLLQCYIKRNRSSQTYYLYLGLNQ-SSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKG 179
           SL+QCYI RNRS+QTYYLYLGLNQ +SNDDGKFLLAA++ RRPTCTDYIISLNCDDVS+G
Sbjct: 121 SLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRG 180

Query: 180 SSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHIS 239
           S+TYIG+LRSNFLGTKFT+YD  P N   +VT+ RS+R +++KQVSP++ +GNY VAHIS
Sbjct: 181 SNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPVAHIS 240

Query: 240 YELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAE 299
           YELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  HS LDSFPS  FFRSKSIRAE
Sbjct: 241 YELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKSIRAE 300

Query: 300 NFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG 354
           +  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA+ ENG AG
Sbjct: 301 SLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPENGPAG 360

Query: 355 QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 400
            EHENVILQFGKVGKDVFTMDYQYPISAFQAF ICLSSFDTKIACE
Sbjct: 361 PEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406

Arabidopsis thaliana (taxid: 3702)
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q53PP5|TLP13_ORYSJ Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1 Back     alignment and function description
>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q944S3|TLP5_ARATH Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1 Back     alignment and function description
>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
225436797405 PREDICTED: tubby-like F-box protein 3-li 1.0 0.987 0.841 0.0
297828507407 hypothetical protein ARALYDRAFT_322431 [ 1.0 0.982 0.813 0.0
302399093401 TLP domain class transcription factor [M 0.992 0.990 0.814 0.0
334184979407 Tubby-like F-box protein 3 [Arabidopsis 1.0 0.982 0.813 0.0
30690823406 Tubby-like F-box protein 3 [Arabidopsis 1.0 0.985 0.815 0.0
388509992402 unknown [Lotus japonicus] 0.977 0.972 0.729 1e-173
255559330444 phosphoric diester hydrolase, putative [ 0.902 0.813 0.792 1e-170
356549056389 PREDICTED: tubby-like F-box protein 6-li 0.927 0.953 0.748 1e-169
357447461393 Tubby-like F-box protein [Medicago trunc 0.927 0.944 0.751 1e-168
356555565385 PREDICTED: tubby-like F-box protein 6-li 0.927 0.963 0.748 1e-167
>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/405 (84%), Positives = 372/405 (91%), Gaps = 5/405 (1%)

Query: 1   MSFKSILQDVKGELGSISRKGFDVRFGYG-RSRSHRVVQDCSVVVDAFKQSCWANMPPEL 59
           MSFKSI+QD++GE GSISRKGF+V+F YG RSRSHRVVQD S+VVDA +QSCWANMPPEL
Sbjct: 1   MSFKSIIQDMRGEFGSISRKGFEVKFNYGLRSRSHRVVQDSSMVVDALRQSCWANMPPEL 60

Query: 60  LRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPR 119
           LRDVL+RIEASE+TWPPRKNVVACAGVCRSWREI KEIVKT E+SGKLTFPISLKQPGPR
Sbjct: 61  LRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSGKLTFPISLKQPGPR 120

Query: 120 GSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKG 179
           GSLLQCYIKRNRS+QTY+LYLGLNQ+S DDGKFLLAARKCRRPTCTDYIISLN DDVSKG
Sbjct: 121 GSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISLNADDVSKG 180

Query: 180 SSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHIS 239
           S+TYIG+LRSNFLGTKFT+YD  PPNA AR++K RSTR++  +QVSP++ AGNY VAHIS
Sbjct: 181 STTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAGNYPVAHIS 240

Query: 240 YELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAE 299
           YELNVLGSRGPRRMQCVMDAIPA++IEPGGVAPTQTEF  S +DSFPS PFFRSKS R E
Sbjct: 241 YELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFVLSNVDSFPSFPFFRSKSNRTE 300

Query: 300 NFQ----NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQ 355
           +      +  K+ +LVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS ENGVAGQ
Sbjct: 301 SLHSGPLSGPKDEMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASAENGVAGQ 360

Query: 356 EHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 400
           EHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Sbjct: 361 EHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297828507|ref|XP_002882136.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata] gi|297327975|gb|EFH58395.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|302399093|gb|ADL36841.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|334184979|ref|NP_001189775.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|3738302|gb|AAC63644.1| putative tubby protein [Arabidopsis thaliana] gi|20197552|gb|AAM15124.1| putative tubby protein [Arabidopsis thaliana] gi|227204449|dbj|BAH57076.1| AT2G47900 [Arabidopsis thaliana] gi|330255815|gb|AEC10909.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30690823|ref|NP_850481.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|79324947|ref|NP_001031558.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|75248467|sp|Q8VY21.1|TLP3_ARATH RecName: Full=Tubby-like F-box protein 3; Short=AtTLP3 gi|18377640|gb|AAL66970.1| putative tubby protein [Arabidopsis thaliana] gi|20465543|gb|AAM20254.1| putative tubby protein [Arabidopsis thaliana] gi|27372514|gb|AAK98802.1| tubby-like protein 3 [Arabidopsis thaliana] gi|330255813|gb|AEC10907.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|330255814|gb|AEC10908.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388509992|gb|AFK43062.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255559330|ref|XP_002520685.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223540070|gb|EEF41647.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.752 0.661 0.509 1.9e-114
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.905 0.952 0.604 5.8e-114
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.865 0.806 0.515 5.5e-113
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.912 0.938 0.592 1.4e-112
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.732 0.658 0.491 4.9e-112
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.955 0.969 0.545 2.1e-107
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.955 0.924 0.509 4.4e-100
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.84 0.886 0.512 8.3e-90
UNIPROTKB|E1B8A6508 TUB "Uncharacterized protein" 0.232 0.183 0.52 1.7e-41
RGD|3918505 Tub "tubby homolog (mouse)" [R 0.232 0.184 0.52 3.4e-41
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 775 (277.9 bits), Expect = 1.9e-114, Sum P(3) = 1.9e-114
 Identities = 162/318 (50%), Positives = 228/318 (71%)

Query:     1 MSFKSILQDVKGELGSISRKGFDVRFGY-----GRSRSHRVVQDC--SVVVDAFKQSCWA 53
             MSF+SI++DV+  +GS+SR+ FD +        G+SR    VQD     +V   +++ WA
Sbjct:     1 MSFRSIVRDVRDSIGSLSRRSFDFKLSSLNKEGGKSRGS--VQDSHEEQLVVTIQETPWA 58

Query:    54 NMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISL 113
             N+PPELLRDV+ R+E SE+ WP R++VVACA VCRSWR++ KEIV++ E+SGK+TFP+SL
Sbjct:    59 NLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSL 118

Query:   114 KQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN-DDGKFLLAARKCRRPTCTDYIISLN 172
             KQPGPR + +QC+IKR++S+ TY+LYL L+ +   ++GKFLL+A++ RR T T+Y+IS++
Sbjct:   119 KQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMH 178

Query:   173 CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP-NAE-AR-VTKCRSTRQVNMKQVSPKLL 229
              D +S+ S+TYIG++RSNFLGTKF IYD  P  N+  AR V     +R+   K+VSPK+ 
Sbjct:   179 ADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYSKRVSPKVP 238

Query:   230 AGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF--HHSGLD-SFP 286
             +G+Y +A +SYELNVLG+RGPRRM C M++IPASS+  GG  P Q +     S LD SF 
Sbjct:   239 SGSYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFR 298

Query:   287 SIPFFRSKSIRAENFQND 304
             SI    S+ I  + + ND
Sbjct:   299 SITSSSSRKITYD-YSND 315
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8A6 TUB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H485TLP11_ORYSJNo assigned EC number0.64771.00.9852yesno
Q8VY21TLP3_ARATHNo assigned EC number0.81521.00.9852yesno
Q10LG8TLP6_ORYSJNo assigned EC number0.68231.00.9925yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_4002488
annotation not avaliable (407 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
pfam01167243 pfam01167, Tub, Tub family 1e-115
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  336 bits (864), Expect = e-115
 Identities = 128/282 (45%), Positives = 167/282 (59%), Gaps = 42/282 (14%)

Query: 116 PGPRGSLLQCYIKRNRSSQTYYLYLGLN---QSSNDDGKFLLAARKCRRPTCTDYIISLN 172
           P PRG  +QC I R++S   Y L+       +  N   KFLLAARK +R   ++Y+ISL+
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 173 CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 232
             D+S+    YIG+LRSNFLGTKFT++D      +AR+             V+PK+ +G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 233 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 292
             +A + YE NVLG RGPR+M  +M  IP+S        P Q       L S        
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPLNDQESLLS-------- 155

Query: 293 SKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGV 352
                   +QN  KE LLVL NKAPRW++QLQ + LNF+GRVT ASVKNFQ+       V
Sbjct: 156 -------RWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQI-------V 201

Query: 353 AGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 394
              + + ++LQFG+V KD+FTMDY+YP+SAFQAFAICLSSFD
Sbjct: 202 HASDPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 400
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.76
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.78
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.61
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.43
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.15
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 96.72
KOG2997366 consensus F-box protein FBX9 [General function pre 89.35
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-128  Score=951.73  Aligned_cols=353  Identities=58%  Similarity=0.941  Sum_probs=309.0

Q ss_pred             CchhhhhhhhccccCcceecceeeeecccCCcccceecccccccccccCCccCCCChHHHHHHHHhhhhcCCCCCCccce
Q 015810            1 MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNV   80 (400)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~v   80 (400)
                      |+++++++++++..      +++..........+..+++.. .+.....+.|++||||||+|+|+|+|++|+.||+|++|
T Consensus         1 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~~v   73 (355)
T KOG2502|consen    1 MGEDGPVRDPEDKS------SFRAPQGSGTKGPEDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRRNV   73 (355)
T ss_pred             CCccCccCCCCccc------chhcccccccccCCCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccccccc
Confidence            78999999998876      444444322111233333331 11111228999999999999999999999999999999


Q ss_pred             eeecccChhHHHHHHHHhcCccccceeeccccccCCCCCCceEEEEEEEeccCCeEEEEeecccCCC--CCCceEEEEEe
Q 015810           81 VACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN--DDGKFLLAARK  158 (400)
Q Consensus        81 v~ca~vc~~wr~~~~eiv~~pe~~g~ltFpisLkqPgPrd~~iqC~IkR~k~~~tY~Lyl~l~~~~~--~~gkfLLaArK  158 (400)
                      |+||+||+.||++++|||++|+.++++|||++|+||||+|.++||+|+|||+|++|+||++|.+++.  |++||||||||
T Consensus        74 vs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark  153 (355)
T KOG2502|consen   74 VSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARK  153 (355)
T ss_pred             ccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeee
Confidence            9999999999999999999999999999999999999999999999999999999999999998753  77999999999


Q ss_pred             cCCCCcceEEEEecCCCCCCCCcceeeEeeeceeecEEEEecCCCCCcccccccccccccccccccCccccCccEeEEEE
Q 015810          159 CRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHI  238 (400)
Q Consensus       159 ~rr~~tSnYiISld~~dlSr~S~~yvGKLRSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V  238 (400)
                      +||+||+|||||+|++||||++++||||||||||||||||||+|.++.          |.++      ++|+++|+||+|
T Consensus       154 ~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~----------r~~~------~~~~~~~~la~V  217 (355)
T KOG2502|consen  154 RRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNPS----------RRFN------KVPSGRQELAAV  217 (355)
T ss_pred             ecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCcc----------cccc------cCCcccceeeEE
Confidence            999999999999999999999999999999999999999999986543          2333      688999999999


Q ss_pred             EEEeeccCCCCCceeeEeeccCCccccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEecCCCc
Q 015810          239 SYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPR  318 (400)
Q Consensus       239 ~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~lvL~nK~P~  318 (400)
                      +||+||||+||||||+|+||+||.++  ++|.+|.|++..+..     .+  ++        +.+..++++++|+||+|+
T Consensus       218 ~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l--~r--------~~~k~~e~~lvL~NK~P~  280 (355)
T KOG2502|consen  218 IYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL--FR--------SQNKDKEGLLVLKNKTPR  280 (355)
T ss_pred             EEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh--hh--------ccccCcccceEeecCCCc
Confidence            99999999999999999999999987  899999987654421     01  11        112346899999999999


Q ss_pred             ccccccceEeccCCceeccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccc
Q 015810          319 WHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIA  398 (400)
Q Consensus       319 w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlA  398 (400)
                      |||++||||||||||||+||||||||||..       ++++|||||||||+|+|||||+||||+||||||||||||||||
T Consensus       281 wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKla  353 (355)
T KOG2502|consen  281 WNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLA  353 (355)
T ss_pred             cccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhcccccc
Confidence            999999999999999999999999999985       5699999999999999999999999999999999999999999


Q ss_pred             cC
Q 015810          399 CE  400 (400)
Q Consensus       399 CE  400 (400)
                      ||
T Consensus       354 Ce  355 (355)
T KOG2502|consen  354 CE  355 (355)
T ss_pred             CC
Confidence            98

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 2e-49
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 5e-49
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 1e-48
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 3e-44
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 2e-41
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 166/296 (56%), Gaps = 56/296 (18%)
Query: 115 QPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPTCTD 166
           +P P+G  ++C I R++         TY+L+L       +DGK  FLLA RK ++   ++
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSKTSN 78
Query: 167 YIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNMKQV 224
           Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD   +P  A +   +  + RQ      
Sbjct: 79  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ------ 132
Query: 225 SPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDS 284
                     +A + YE NVLG +GPR+M  +   +P  ++    V+      H + L  
Sbjct: 133 ---------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRPRNEHETLL-- 178
Query: 285 FPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 344
                           +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ+
Sbjct: 179 --------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI 224
Query: 345 VASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 400
           +        G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 225 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 2e-94
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 1e-91
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  283 bits (725), Expect = 2e-94
 Identities = 100/289 (34%), Positives = 148/289 (51%), Gaps = 42/289 (14%)

Query: 113 LKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGK-FLLAARKCRRPTCTDYIISL 171
           + +P P+G  ++C + R++      +Y       + + K FLLA RK +R    +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 172 NCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAG 231
           +  ++S+G   +IG+LRSN LG +FT++D                     +  S  + + 
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP---------------QRGYSTNVASL 133

Query: 232 NYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFF 291
              +A + YE NVLG RGPRRM  ++   P  S E   V           L         
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVII---PGMSAENERVPIRPRNASDGLL--------- 181

Query: 292 RSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENG 351
                    +QN   E L+ L NK P W++    + LNF GRVT ASVKNFQ+V +    
Sbjct: 182 -------VRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA---- 230

Query: 352 VAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 400
               + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+ACE
Sbjct: 231 ---DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.08
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.91
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.73
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.53
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.48
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 94.33
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.66
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 92.19
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 91.77
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=3.6e-90  Score=670.32  Aligned_cols=248  Identities=40%  Similarity=0.749  Sum_probs=189.2

Q ss_pred             cceeeccccccCCCCCCceEEEEEEEeccC------CeEEEEeecccCCCCCCceEEEEEecCCCCcceEEEEecCCCCC
Q 015810          104 SGKLTFPISLKQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVS  177 (400)
Q Consensus       104 ~g~ltFpisLkqPgPrd~~iqC~IkR~k~~------~tY~Lyl~l~~~~~~~gkfLLaArK~rr~~tSnYiISld~~dlS  177 (400)
                      ..+..|   |+||+|+|++|||+|+|||+|      ++|||||+     .++++|||||||+|+++|+||+||+|++||+
T Consensus        23 ~~~~~f---l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dls   94 (276)
T 2fim_A           23 MEPREF---VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLS   94 (276)
T ss_dssp             --CTTG---GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC--
T ss_pred             HHHHHH---hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcc
Confidence            345567   999999999999999999998      58999994     4678999999999999999999999999999


Q ss_pred             CCCcceeeEeeeceeecEEEEecCCCCCcccccccccccccccccccCccccCccEeEEEEEEEeeccCCCCCceeeEee
Q 015810          178 KGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVM  257 (400)
Q Consensus       178 r~S~~yvGKLRSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~~m  257 (400)
                      |++++|||||||||+||+|+|||+|.+++.+               .+|.++++++|||+|.||+||||++|||+|+|+|
T Consensus        95 r~s~~yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~i  159 (276)
T 2fim_A           95 RGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVII  159 (276)
T ss_dssp             ----CEEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEE
T ss_pred             cCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEe
Confidence            9999999999999999999999999876532               2566778899999999999999999999999998


Q ss_pred             ccCCccccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEecCCCcccccccceEeccCCceecc
Q 015810          258 DAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA  337 (400)
Q Consensus       258 ~~Ip~s~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~a  337 (400)
                      |.+   . ++|+..|.++   ....+++  +..+          .+.+.+++++|+||+|+|||++|||||||+||||+|
T Consensus       160 P~~---~-~~~~~~~~~p---~~~~~~l--l~~~----------~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a  220 (276)
T 2fim_A          160 PGM---S-AENERVPIRP---RNASDGL--LVRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA  220 (276)
T ss_dssp             ECB---C-TTSCBCCCCC---SSTTCSH--HHHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred             cCc---c-cCCCEecccC---CCccccc--chhh----------hccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence            653   2 2344333221   1111211  1111          123457899999999999999999999999999999


Q ss_pred             ccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccccC
Q 015810          338 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE  400 (400)
Q Consensus       338 SVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlACE  400 (400)
                      ||||||||+++       ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       221 SvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          221 SVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             ccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            99999999974       578999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 400
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 1e-100
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 0.001
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  298 bits (763), Expect = e-100
 Identities = 98/291 (33%), Positives = 149/291 (51%), Gaps = 42/291 (14%)

Query: 113 LKQPGPRGSLLQCYIKRNRSSQT---YYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYII 169
             +P P+G  ++C I R++       +  Y       +    FLLA RK ++   ++Y+I
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 170 SLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLL 229
           S++  D+S+G  +YIG+LRSN +GTKFT+YD      +A  +   S              
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT------------ 121

Query: 230 AGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIP 289
                +A + YE NVLG +GPR+M  ++  +             + E             
Sbjct: 122 -LRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHET------------ 168

Query: 290 FFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLE 349
                      +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ++    
Sbjct: 169 -------LLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG-- 219

Query: 350 NGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 400
                 + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 220 -----NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 97.99
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.01
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.81
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.98
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-85  Score=630.40  Aligned_cols=253  Identities=40%  Similarity=0.712  Sum_probs=210.2

Q ss_pred             ccceeeccccccCCCCCCceEEEEEEEeccCC------eEEEEeecccCCCCCCceEEEEEecCCCCcceEEEEecCCCC
Q 015810          103 VSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDV  176 (400)
Q Consensus       103 ~~g~ltFpisLkqPgPrd~~iqC~IkR~k~~~------tY~Lyl~l~~~~~~~gkfLLaArK~rr~~tSnYiISld~~dl  176 (400)
                      +..+..|   |.||||+|++|||+|+|||+|+      +|+|||+.   ..++++|||||||+|+++++|||||+|++|+
T Consensus         7 ~~~~~~F---l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~---~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~   80 (265)
T d1c8za_           7 VQDLEEF---ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDR---EDGKKVFLLAGRKRKKSKTSNYLISVDPTDL   80 (265)
T ss_dssp             CCSHHHH---HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEEC---TTSCEEEEEEEEEEESSSSEEEEEESCHHHH
T ss_pred             hhhHHHH---hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEcc---CCCceeEEEEEeeecCCCcceEEEEccHHHh
Confidence            3445567   9999999999999999999875      57778753   2345679999999999999999999999999


Q ss_pred             CCCCcceeeEeeeceeecEEEEecCCCCCcccccccccccccccccccCccccCccEeEEEEEEEeeccCCCCCceeeEe
Q 015810          177 SKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCV  256 (400)
Q Consensus       177 Sr~S~~yvGKLRSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~~  256 (400)
                      ||+|++|||||||||+||+|+|||+|.+++.+...             ++...+.++|||+|+||+||||++|||+|+|+
T Consensus        81 sr~s~~yvGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~  147 (265)
T d1c8za_          81 SRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVI  147 (265)
T ss_dssp             TTTCCCCSEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEE
T ss_pred             cccccceeEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEE
Confidence            99999999999999999999999999888765422             12223457899999999999999999999999


Q ss_pred             eccCCccccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEecCCCcccccccceEeccCCceec
Q 015810          257 MDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTV  336 (400)
Q Consensus       257 m~~Ip~s~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~  336 (400)
                      ||.++......        .+.+..+ .-..+.          .+.+...+++++|+||+|+||++++||+|||+||||+
T Consensus       148 ip~~~~~~~~~--------~~~p~~~-~~~~~~----------~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~  208 (265)
T d1c8za_         148 VPGMNMVHERV--------CIRPRNE-HETLLA----------RWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQ  208 (265)
T ss_dssp             EECBCTTSCBC--------CCCCSST-TSSHHH----------HHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEE
T ss_pred             ecCCCcccccc--------ccCCCCc-chhhhH----------HhhccCcccceEEecCCCeeeccCCEEEeccCCEEec
Confidence            98876432110        1111111 000111          1123456889999999999999999999999999999


Q ss_pred             cccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccccC
Q 015810          337 ASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE  400 (400)
Q Consensus       337 aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlACE  400 (400)
                      |||||||||++.       +++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       209 ~SvKNFql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         209 ASVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             CBTTEEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             cccceEEEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            999999999864       678899999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure