Citrus Sinensis ID: 015819

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccc
mrgneteknmeesllipkeslssssttwgVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQaygaqqyqrigTQTYTAIFCLFLVCFPLSFLWIYAGKLLVligqdpqishEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIpicwslvyksglgnlGGALAIGISNWLNVTFLAIYMKFSTacaesrvpiSMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSgllpnpqleTSVLSVCLNTIQTLYAIPYGLGAAVSTRVSnelgagnvqKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG
mrgneteknmeesllipkeslssssTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDslqgvfsg
MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSglgnlggalaigiSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG
**************************TWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQG****
****************************GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG
************SLLIPK*********WGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG
********************LSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHii
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MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query399 2.2.26 [Sep-21-2011]
Q9SIA4476 MATE efflux family protei no no 0.977 0.819 0.515 1e-111
Q8GXM8476 MATE efflux family protei no no 0.974 0.817 0.503 1e-109
Q9SIA5476 MATE efflux family protei no no 0.974 0.817 0.498 1e-107
Q9SIA1477 MATE efflux family protei no no 0.977 0.817 0.491 1e-105
Q8RWF5483 MATE efflux family protei no no 0.977 0.807 0.491 1e-104
Q9SIA3476 MATE efflux family protei no no 0.977 0.819 0.482 1e-103
Q9LUH2477 MATE efflux family protei no no 0.974 0.815 0.332 2e-62
Q9LUH3469 MATE efflux family protei no no 0.917 0.780 0.349 7e-62
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.877 0.690 0.343 1e-52
Q3V050 573 Multidrug and toxin extru yes no 0.924 0.643 0.314 7e-46
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function desciption
 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/392 (51%), Positives = 269/392 (68%), Gaps = 2/392 (0%)

Query: 10  MEESLLIPKESLSSSSTTW--GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
           MEE  L+  E L     TW  G ++ E+KK   +AAPM AVT++QYLL V+S+M+ GH G
Sbjct: 1   MEEPFLLQDEHLVPCKDTWKSGQVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNG 60

Query: 68  QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
           +L LS  A+A S  +V+GFS+L G+A ALETLCGQAYGA+QY++IGT TY+A      +C
Sbjct: 61  ELQLSGVALATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPIC 120

Query: 128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
             +S LWIY  KLL+ +GQDP IS   G + +WL+PALFA+A   PL R+  +Q L++P+
Sbjct: 121 VLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPL 180

Query: 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 247
              +   L  HIP+CW+ VY  GLG+ G A+AI +S W  V  L+ Y+++S++C ++RV 
Sbjct: 181 LYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVF 240

Query: 248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTL 307
           +S +    I +FFHF +PSA M+CLEWW FELLIL SGLLPNP+LETSVLS+CL T    
Sbjct: 241 VSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSICLTTASLH 300

Query: 308 YAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVF 367
           Y IP G+ AAVSTRVSN+LGAG  Q ARV+V A + + + E+   S  LF  R + GY F
Sbjct: 301 YVIPGGVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAF 360

Query: 368 SNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG 399
           SN K+VVDYV  + PL+CLS I+D    V +G
Sbjct: 361 SNSKEVVDYVANLTPLLCLSFILDGFTAVLNG 392

Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
224108371482 predicted protein [Populus trichocarpa] 0.974 0.807 0.731 1e-170
225424132481 PREDICTED: MATE efflux family protein 5 0.969 0.804 0.741 1e-167
147787625481 hypothetical protein VITISV_022104 [Viti 0.969 0.804 0.739 1e-166
255582915476 TRANSPARENT TESTA 12 protein, putative [ 0.979 0.821 0.737 1e-163
297737740443 unnamed protein product [Vitis vinifera] 0.889 0.801 0.791 1e-160
255582919 508 TRANSPARENT TESTA 12 protein, putative [ 0.977 0.767 0.686 1e-158
359472648481 PREDICTED: MATE efflux family protein 5 0.977 0.810 0.709 1e-155
357444623495 Protein TRANSPARENT TESTA [Medicago trun 0.992 0.8 0.652 1e-154
449506364485 PREDICTED: LOW QUALITY PROTEIN: MATE eff 0.989 0.814 0.657 1e-153
356536254475 PREDICTED: MATE efflux family protein 7- 0.969 0.814 0.697 1e-152
>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 291/398 (73%), Positives = 343/398 (86%), Gaps = 9/398 (2%)

Query: 10  MEESLLIPKESLS--------SSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMM 61
           MEESLL P+E           + + TWGV   EVK+ GYIA PMVAV L+QY LQV+SMM
Sbjct: 1   MEESLL-PREVDEKGQGIIGPTPTPTWGVFIQEVKRLGYIAGPMVAVILTQYSLQVISMM 59

Query: 62  MVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIF 121
           MVGHLG+LALSS AMA+SL+ VTGFS+++GMASALETLCGQAYGA+QY+++GTQTYTAIF
Sbjct: 60  MVGHLGELALSSAAMALSLSGVTGFSLMMGMASALETLCGQAYGAKQYKKLGTQTYTAIF 119

Query: 122 CLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQ 181
           CL LVC PLS +WIY GK+L   GQDP ISHE GKF++WL+PALFAYAT+QPL+RYFQ+Q
Sbjct: 120 CLNLVCIPLSVIWIYMGKILHFTGQDPAISHEAGKFIVWLVPALFAYATLQPLVRYFQTQ 179

Query: 182 SLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTAC 241
           S I+PM +SSCA LC HIP+CW+LVYKSGL N+G A+A+GIS WLNV FL +Y+K+S+AC
Sbjct: 180 SFIMPMLISSCATLCFHIPLCWALVYKSGLKNVGSAVAMGISYWLNVIFLGLYIKYSSAC 239

Query: 242 AESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCL 301
           A++RVPI  ELF G+GEFF FAIPSAVMICLEWWSFELLIL+SG LPNPQLETSVLSVCL
Sbjct: 240 AKTRVPIYKELFYGVGEFFRFAIPSAVMICLEWWSFELLILLSGFLPNPQLETSVLSVCL 299

Query: 302 NTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRR 361
            TI TLY IP+GLGAA STRV+NELGAGN + AR+AVYA +F+AV+ETI+V++ LFASRR
Sbjct: 300 MTISTLYGIPFGLGAAASTRVANELGAGNPRAARLAVYAAMFLAVSETIIVTSALFASRR 359

Query: 362 VFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG 399
           VFGY+FSNEK+V+DYVTTMAPLVCLSVIMDSLQGV SG
Sbjct: 360 VFGYLFSNEKEVIDYVTTMAPLVCLSVIMDSLQGVLSG 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582919|ref|XP_002532231.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528088|gb|EEF30162.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359472648|ref|XP_002280189.2| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357444623|ref|XP_003592589.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481637|gb|AES62840.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|388490870|gb|AFK33501.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449506364|ref|XP_004162729.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356536254|ref|XP_003536654.1| PREDICTED: MATE efflux family protein 7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.917 0.754 0.612 5.1e-122
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.977 0.810 0.541 4.6e-121
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.984 0.815 0.535 1.4e-117
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.977 0.800 0.530 6.2e-117
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.929 0.761 0.541 2.1e-116
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.977 0.819 0.497 2e-102
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.982 0.813 0.478 1.9e-99
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.974 0.817 0.486 2.4e-99
TAIR|locus:2010926 502 AT1G64820 [Arabidopsis thalian 0.964 0.766 0.487 2.2e-98
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.974 0.817 0.483 2.8e-98
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 224/366 (61%), Positives = 282/366 (77%)

Query:    34 EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
             E KK  YIA PM+AV  S Y+LQV+S+MMVGHLG+L LSSTA+A+S  SVTGFSV+ G+A
Sbjct:    26 ETKKLSYIAGPMIAVNSSMYVLQVISIMMVGHLGELFLSSTAIAVSFCSVTGFSVVFGLA 85

Query:    94 SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
             SALETLCGQA GA+QY+++G  TYT I  LFLVC PLS LW Y G +L LIGQD  ++ E
Sbjct:    86 SALETLCGQANGAKQYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILSLIGQDAMVAQE 145

Query:   154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXXX 213
              GKF  WL+PALF YAT+QPL+R+FQ+QSLI+P+ +SS ++LC+HI +CWSLV+K     
Sbjct:   146 AGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFKFGLGS 205

Query:   214 XXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE 273
                      S WLNVT L +YM FS++C++SR  ISM LF+G+GEFF F IPSA MICLE
Sbjct:   206 LGAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSLFEGMGEFFRFGIPSASMICLE 265

Query:   274 WWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 333
             WWSFE L+L+SG+LPNP+LE SVLSVCL+T  +LY IP  LGAA STRV+NELGAGN ++
Sbjct:   266 WWSFEFLVLLSGILPNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANELGAGNPKQ 325

Query:   334 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSL 393
             AR+AVY  + +   E+I+V A +F +R VFGY+FS+E +VVDYV +MAPL+ LSVI D+L
Sbjct:   326 ARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSSETEVVDYVKSMAPLLSLSVIFDAL 385

Query:   394 QGVFSG 399
                 SG
Sbjct:   386 HAALSG 391
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.6692.1
hypothetical protein (455 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX1583
hypothetical protein (460 aa)
  •     0.425

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-141
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 9e-57
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-39
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-39
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-25
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-25
pfam01554161 pfam01554, MatE, MatE 3e-23
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 3e-20
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-20
pfam01554161 pfam01554, MatE, MatE 3e-15
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-13
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-13
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 5e-12
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-11
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 7e-11
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-10
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 7e-10
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 8e-10
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-07
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 8e-07
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 6e-06
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-05
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-04
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 9e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 0.002
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 0.002
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  409 bits (1054), Expect = e-141
 Identities = 165/366 (45%), Positives = 242/366 (66%), Gaps = 1/366 (0%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E KK   +AAP+V  +L QY L VVS++ VGHLG+L L++ ++A S A+VTGFS+LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
           SAL+TLCGQA+GA+ Y+ +G     A+  L L C P+S LW+    +L+L+GQDP+I+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGN 213
            G+++ WL+P LFAYA  +PL RY Q+Q +++P+   S  AL L+I + + LV+  GLG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 214 LGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE 273
           +G ALA  IS WL V  L +Y+ FS     +    S E F+G G F   AIPSA+M+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 274 WWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 333
           WW+FE+L+L++GLLP   +  +  S+CL T   LY IP G+  A S RV NELGAGN ++
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 334 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSL 393
           A++A    + +++   +VV+  L   R V+ Y+F+++++V+  V  + P++ L  I D L
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 394 QGVFSG 399
           Q V SG
Sbjct: 360 QAVLSG 365

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 399
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695 502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 99.97
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.93
PRK00187464 multidrug efflux protein NorA; Provisional 99.92
COG0728 518 MviN Uncharacterized membrane protein, putative vi 99.92
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.92
PRK10189478 MATE family multidrug exporter; Provisional 99.91
PRK01766456 multidrug efflux protein; Reviewed 99.91
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.91
PRK10459 492 colanic acid exporter; Provisional 99.89
TIGR01695502 mviN integral membrane protein MviN. This model re 99.88
COG2244 480 RfbX Membrane protein involved in the export of O- 99.86
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.84
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.82
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.8
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.79
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.78
PRK10459492 colanic acid exporter; Provisional 99.78
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.77
PRK15099416 O-antigen translocase; Provisional 99.76
COG2244480 RfbX Membrane protein involved in the export of O- 99.69
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.59
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.51
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.5
KOG1347473 consensus Uncharacterized membrane protein, predic 99.15
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.02
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.73
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.57
PF04506 549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.56
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.42
KOG2864 530 consensus Nuclear division RFT1 protein [Cell cycl 98.14
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.7
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.41
COG4267467 Predicted membrane protein [Function unknown] 97.13
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 96.85
COG4267467 Predicted membrane protein [Function unknown] 91.15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1e-50  Score=385.02  Aligned_cols=365  Identities=22%  Similarity=0.299  Sum_probs=346.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCccchhH
Q 015819           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (399)
Q Consensus        32 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~  111 (399)
                      ++..|+++++++|++++++...+++.+|+.++||++++++++.+++.++..+. ..+..|++.|+++.++|++|+||+++
T Consensus        13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            67899999999999999999999999999999999999999999999999998 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 015819          112 IGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (399)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  190 (399)
                      +++..++++.+.++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..++.++.+.+|+.|+++.+++.
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~  171 (455)
T COG0534          92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI  171 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence            9999999999999999888877 999999999999988899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHhhh-cc-CccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCChHHHhcHHHHHHHHhHHH
Q 015819          191 SCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNVTFLAIYMKFSTA-CAESRVPISMELFQGIGEFFHFAIPSA  267 (399)
Q Consensus       191 ~~~~~~~~i~l~~~li~~-~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~  267 (399)
                      ++.++++|+++|++|+++ ++ +|+.|+++||.+++.+..+...++++++++ ......+..+.+++.+|++++.|+|.+
T Consensus       172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~  251 (455)
T COG0534         172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF  251 (455)
T ss_pred             HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence            999999999999999998 57 999999999999999999999999988764 222223343456688999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 015819          268 VMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVT  347 (399)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  347 (399)
                      +++..+...+...+.+.+++|+  +.+|+|+++.++.++.++++.|++++.+++++|++|+||+|++|+..+.+.++++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~  329 (455)
T COG0534         252 LESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLL  329 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999994  58999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 015819          348 ETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSG  399 (399)
Q Consensus       348 ~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~v~~G  399 (399)
                      +++...++++++++++.++|++|+|+.+.+...+++..+.+++++.+.+.+|
T Consensus       330 ~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g  381 (455)
T COG0534         330 IALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSG  381 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988764

>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 1e-07
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 5e-04
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 150/371 (40%), Gaps = 21/371 (5%)
Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA--SALET 98
           +A P++  +++Q  +  V  +M G +  + +++ ++A   AS+   S+L G+    AL  
Sbjct: 17  LATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIA---ASIWLPSILFGVGLLMALVP 73
Query: 99  LCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFM 158
           +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++ +   +M
Sbjct: 74  VVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYM 133
Query: 159 IWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXXXXXXXX 218
             ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY           
Sbjct: 134 HAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGV 193
Query: 219 XXXXSN----WLNVTFLAIYMKFSTACAESRV------PISMELFQGIGEFFHFAIPSAV 268
               +     W+ +  L  Y+  S   A  +V      P   EL +     F    P A 
Sbjct: 194 GCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR----LFRLGFPVAA 249
Query: 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGA 328
            +  E   F ++ L+  + P      +   V LN    ++  P  +GAAVS RV ++LG 
Sbjct: 250 ALFFEVTLFAVVALL--VAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE 307
Query: 329 GNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSV 388
            + + A +A    +   +    + +      R     +++  + VV     +     +  
Sbjct: 308 QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQ 367
Query: 389 IMDSLQGVFSG 399
            MD++Q V +G
Sbjct: 368 CMDAVQVVAAG 378
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 6e-73
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  234 bits (598), Expect = 6e-73
 Identities = 76/372 (20%), Positives = 155/372 (41%), Gaps = 9/372 (2%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E      +A P++  +++Q  +  V  +M G +  + +++ ++A S+  +      +G+ 
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGLL 68

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
            AL  +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++ +
Sbjct: 69  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATK 128

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSG--- 210
              +M  ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY      
Sbjct: 129 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188

Query: 211 -LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL--FQGIGEFFHFAIPSA 267
            LG +G  +A  I  W+ +  L  Y+  S   A  +V  +      + +   F    P A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248

Query: 268 VMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELG 327
             +  E   F ++ L+   L +  +  +   V LN    ++  P  +GAAVS RV ++LG
Sbjct: 249 AALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 306

Query: 328 AGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLS 387
             + + A +A    +   +    + +      R     +++  + VV     +     + 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366

Query: 388 VIMDSLQGVFSG 399
             MD++Q V +G
Sbjct: 367 QCMDAVQVVAAG 378
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.89
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.3e-42  Score=331.64  Aligned_cols=365  Identities=20%  Similarity=0.316  Sum_probs=335.9

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCccchh
Q 015819           31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ  110 (399)
Q Consensus        31 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~  110 (399)
                      .+++.|++++.++|.+++++...+...+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.+++++|++|+|
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~   85 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH   85 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence            368899999999999999999999999999999999999999999999998876 7788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 015819          111 RIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (399)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  190 (399)
                      +.++..++++.+..+.++++++++.+.+++..+++.|++..+.+..|+++++++.++..+...+.+.+++.|+++.+++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            99999999999999999887766788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHhhh----ccCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCChHHHhcHHHHHHHHh
Q 015819          191 SCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RVPISMELFQGIGEFFHFAI  264 (399)
Q Consensus       191 ~~~~~~~~i~l~~~li~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  264 (399)
                      ++.+.++|+++++++++.    +++|+.|+++|+.+++++..+...++.+++++..+.  +.++.+.+++.+|+++++++
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF  245 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence            999999999999999975    479999999999999999999888887766443221  12222345677899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 015819          265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFM  344 (399)
Q Consensus       265 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~  344 (399)
                      |..+++....+.+..++.+++.+++  .++++|++++++.++..++..+++++..|.+++++|++|++++++..+++.++
T Consensus       246 p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~  323 (460)
T 3mkt_A          246 PVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMT  323 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999964  58999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 015819          345 AVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFS  398 (399)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~v~~  398 (399)
                      +..++++.++++.++++++.++|++|+|+.+.+.+.+++++.+.++++++.+.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  377 (460)
T 3mkt_A          324 GLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAA  377 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887653
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00