Citrus Sinensis ID: 015833
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 399 | 2.2.26 [Sep-21-2011] | |||||||
| Q0JIL1 | 394 | Probable nucleoredoxin 2 | yes | no | 0.899 | 0.911 | 0.489 | 1e-105 | |
| O80763 | 578 | Probable nucleoredoxin 1 | yes | no | 0.877 | 0.605 | 0.449 | 3e-82 | |
| Q7Y0F2 | 581 | Probable nucleoredoxin 1- | no | no | 0.877 | 0.602 | 0.453 | 1e-79 | |
| Q7Y0E8 | 569 | Probable nucleoredoxin 1- | no | no | 0.877 | 0.615 | 0.451 | 2e-79 | |
| Q8VZQ0 | 392 | Probable nucleoredoxin 3 | no | no | 0.877 | 0.892 | 0.413 | 3e-73 | |
| Q7XPE8 | 471 | Probable nucleoredoxin 3 | no | no | 0.804 | 0.681 | 0.379 | 2e-64 | |
| A6QLU8 | 435 | Nucleoredoxin OS=Bos taur | yes | no | 0.634 | 0.581 | 0.314 | 2e-32 | |
| Q6DKJ4 | 435 | Nucleoredoxin OS=Homo sap | yes | no | 0.634 | 0.581 | 0.318 | 2e-32 | |
| P97346 | 435 | Nucleoredoxin OS=Mus musc | yes | no | 0.634 | 0.581 | 0.318 | 2e-32 | |
| Q503L9 | 418 | Nucleoredoxin OS=Danio re | yes | no | 0.676 | 0.645 | 0.293 | 5e-32 |
| >sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/372 (48%), Positives = 255/372 (68%), Gaps = 13/372 (3%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G EV++S+LEGK+ LYF+ANWYP C FT L Y +L+ +G+ FEV+FVS DE+ +
Sbjct: 31 GNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCDENRPS 90
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F + MPW AVP+ D+ KK L+ +F +EGIP LVVL P + D VEL+++Y
Sbjct: 91 FERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAP---NGEVVQPDAVELVHRY 147
Query: 142 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVG 201
G RAFPFT ++ EL+ +E+ K QTL + + + Y+ G E+VP+SSLVGKTVG
Sbjct: 148 GDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGS--QEQVPISSLVGKTVG 205
Query: 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261
LYFSA C PC KF KL +IY +K G A EDFE++++ D+++ + M
Sbjct: 206 LYFSAHRCAPCIKFTAKLAAIYSNLK------GKA-EDFEIIYIPMDKEEDGYLRSCSDM 258
Query: 262 PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 320
PWLALP+ D + L +YFDV+ IP LV++GP+GKTVT++GRNL+NLY + A+PFT+ +
Sbjct: 259 PWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQ 318
Query: 321 LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 380
+ L++ +E+AK P S H GHRHEL++VS+ +GGGP+ICC+CDEQG GWAYQC+ CG
Sbjct: 319 IRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQCIACG 378
Query: 381 YEVHPKCVRAVD 392
YE+H +C R ++
Sbjct: 379 YEIHLRCGRDME 390
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 226/369 (61%), Gaps = 19/369 (5%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +V VS+LEGK L FS Y C T LV+ Y +L+ N DFE+V +S ++D +
Sbjct: 193 GNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISLEDDEES 252
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYK 140
FN PWLA+P++D K L R F + +P LV+L P D T H V E I
Sbjct: 253 FNQDFKTKPWLALPFNDKSGSK-LARHFMLSTLPTLVILGP----DGKTRHSNVAEAIDD 307
Query: 141 YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 200
YG+ A+PFT EK +EL++ EK K E QTL +LL + D Y+LG KV VS LVGKT+
Sbjct: 308 YGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKD-GAKVLVSDLVGKTI 366
Query: 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 260
+YFSA WC PC F PKL+ +Y++IK+ E FE++F+S+DRDQ SF+ Y+
Sbjct: 367 LMYFSAHWCPPCRAFTPKLVEVYKQIKERN-------EAFELIFISSDRDQESFDEYYSQ 419
Query: 261 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 320
MPWLALPFGDP L K F V GIP L +GP G+TVTK+ R+L+ + +AYPFTE +
Sbjct: 420 MPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEER 479
Query: 321 LEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 379
L+ +E + +E AK+ P+ H+ H HEL L T + C C+E+G+ W+Y C EC
Sbjct: 480 LKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDKCEEEGTIWSYHCDEC 535
Query: 380 GYEVHPKCV 388
+++H KC
Sbjct: 536 DFDLHAKCA 544
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Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/375 (45%), Positives = 229/375 (61%), Gaps = 25/375 (6%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G++V +SDLEGK L F N Y P FT VL +YE+L+ G FEVV VS D D +
Sbjct: 193 GDKVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGEKFEVVMVSLDGDEES 252
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYK 140
FN A MPWLA+P D +K L R F++ G+P LV++ P D TL+D + ++I +
Sbjct: 253 FNESFADMPWLAIPQGDKMCEK-LARYFELSGLPMLVLIGP----DGKTLNDDIADIIDE 307
Query: 141 YGIRA---FPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVG 197
+G A FPF+ EKLE L ++ K K E QTL +LL D ++LG KVPVS LVG
Sbjct: 308 HGPDAWEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFVLGKD-GAKVPVSELVG 366
Query: 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY 257
KTV LYFSA+WC PC F+PKL++ Y KIK+ DFE+VF+S+DR+Q+S++ +
Sbjct: 367 KTVLLYFSAKWCPPCRAFLPKLVNEYNKIKEKH-------NDFEIVFISSDREQSSYDEF 419
Query: 258 FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 317
F MPWLALP GD ++L+K F + GIP LV IGP+GKTVTK + + + +A+PFT
Sbjct: 420 FSGMPWLALPLGDERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVAHGADAFPFT 479
Query: 318 ----EAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWA 373
+ + EK++ + AK P H H HEL L T G C CDE G W+
Sbjct: 480 EEKLQELEKEKEKKINDMAKGWPEKLKHDLHDHELVLTRCTTYG----CDGCDEMGDSWS 535
Query: 374 YQCLECGYEVHPKCV 388
Y+C EC +++HPKC
Sbjct: 536 YRCKECDFDLHPKCA 550
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 168/372 (45%), Positives = 226/372 (60%), Gaps = 22/372 (5%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ V +SDLEGK L F N Y P FT +L YE+L+ G FEVV VS D D
Sbjct: 186 GDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVSLDSDEEL 245
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYK 140
N A MPWLA+P D +K L R F++ G+P LV++ P D TL++ V ++I +
Sbjct: 246 SNESFAGMPWLAIPQEDKMGEK-LARYFELRGLPTLVLIGP----DGKTLNNNVADIIDE 300
Query: 141 YGIRA---FPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVG 197
+G A FPFT EK+E L ++ K K E QTL +LL D ++LG KVPVS LVG
Sbjct: 301 HGQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFVLGKD-GAKVPVSELVG 359
Query: 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY 257
KTV LYFSA+WC PC F+PKL+ Y KIK+ DFE++F+S+DRDQ+S++ +
Sbjct: 360 KTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKH-------NDFEIIFISSDRDQSSYDEF 412
Query: 258 FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 317
F MPWLALP GD + L+K F V+GIP LV IG +G+TV + + + + +A+PFT
Sbjct: 413 FSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFT 472
Query: 318 EAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQC 376
E +L +E++++E AK P H H HEL L T G C CDE GS W+Y+C
Sbjct: 473 EERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYG----CDGCDEMGSSWSYRC 528
Query: 377 LECGYEVHPKCV 388
EC +++HPKC
Sbjct: 529 RECDFDLHPKCA 540
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 212/365 (58%), Gaps = 15/365 (4%)
Query: 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83
EV + + GK L+FSA W PC +FT L+ +YE L+N G + E++FVS D D+ +F
Sbjct: 35 EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNRGEELEIIFVSFDHDMTSFY 94
Query: 84 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 143
+ CMPWLAVP+ +L L K+ I IP LV L Y D + + D + LI YG
Sbjct: 95 EHFWCMPWLAVPF-NLSLLNKLRDKYGISRIPSLVPL--YSD-EISVAEDVIGLIEDYGS 150
Query: 144 RAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLY 203
AFPFTK++ EEL+ + K L LLT+ R Y++ KV VS LVGKT+GLY
Sbjct: 151 EAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARN-GSKVLVSKLVGKTIGLY 209
Query: 204 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 263
F A WC P F +L+ +Y ++ +KG FEV+ +STDRD F MPW
Sbjct: 210 FGAHWCPPFRSFTSQLVDVYNELATT--DKGS----FEVILISTDRDSREFNINMTNMPW 263
Query: 264 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 323
LA+P+ D T ++L + F+V+ IP LVIIGPE KTVT R +++LY ++PFTE+++
Sbjct: 264 LAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESRIVE 323
Query: 324 LEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEV 383
L+ +++E +LPR H HEL L ++C C +QG WA+ C C Y++
Sbjct: 324 LKACLKKEGDSLPRKVKDNKHEHELKL----DMAKAYVCDFCKKQGRFWAFSCNACDYDL 379
Query: 384 HPKCV 388
HP CV
Sbjct: 380 HPTCV 384
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 196/329 (59%), Gaps = 8/329 (2%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+E+ +S +EGK L+FSA+W PC NFT L+ +Y +LRN + E++F+S D D +
Sbjct: 31 GKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNTCKNMEIIFISLDRDEIS 90
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F +Y MPWLA+P+ D ++ L +FDIE IP L+ L D V+L+ +Y
Sbjct: 91 FLDYFKGMPWLALPF-DTGLRQKLCVQFDIEHIPALIPLSTTLSHGFRVEEDAVKLVEEY 149
Query: 142 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVG 201
G+ A+PF ++ EL+ + + + L+ LL +R Y++ K P+S L GKT+G
Sbjct: 150 GVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVIS-ADGIKTPISDLNGKTIG 208
Query: 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261
LYF A WC PC F +L Y ++K + G+ F+V+F+S DR++ F++ M
Sbjct: 209 LYFGAHWCPPCRAFTKQLREAYDELKA--LRPGN----FQVIFISMDRNEEEFQASLSAM 262
Query: 262 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKL 321
PW A+P+ D T++EL++ F ++GIP L+I+GP+GK GR +I+ Y A+PFTE++
Sbjct: 263 PWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPFTESRA 322
Query: 322 EFLEKQMEEEAKNLPRSEFHIGHRHELNL 350
LE+ +++E +LP H HEL L
Sbjct: 323 YELEEVLKKERDSLPHRVRDHRHEHELEL 351
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 144/305 (47%), Gaps = 52/305 (17%)
Query: 22 GEEVKVSDLEGK---VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD----------- 67
GEEV V L + + LYF + PC + L Y LR + +
Sbjct: 18 GEEVDVHSLAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGPGAGAS 77
Query: 68 --------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 119
E+VFVSSD+D + ++ MPWLA+PY + K L K+ I IP L+
Sbjct: 78 AEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNIPSLIF 137
Query: 120 LQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG 179
L K +G+ +I ++ E L+ K R+ + L +
Sbjct: 138 LDATSGK--VVCRNGLLVI-----------RDDPEGLEFPWGPKPFREVIAGPLLRSN-- 182
Query: 180 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 239
+ + SSL G VG+YFSA WC PC L+ Y+KIK+ A +
Sbjct: 183 -------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQK 228
Query: 240 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTV 298
FE++FVS DR + SF+ YF MPWLA+P+ D + L + + +QGIP L+++ P+G+ +
Sbjct: 229 FEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVI 288
Query: 299 TKQGR 303
T+QGR
Sbjct: 289 TRQGR 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 149/305 (48%), Gaps = 52/305 (17%)
Query: 22 GEEVKVSDLEGK---VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD----------- 67
GEEV V L + + LYF + PC + L Y LR + +
Sbjct: 18 GEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGAGAGAA 77
Query: 68 --------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 119
E+VFVSSD+D + ++ MPWLA+PY + K L K+ I IP L+
Sbjct: 78 AEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNIPSLIF 137
Query: 120 LQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG 179
L DAT +++ + G+ ++ E L+ K R+ + L ++
Sbjct: 138 L-------DATTG---KVVCRNGLLVI---RDDPEGLEFPWGPKPFREVIAGPLLRNN-- 182
Query: 180 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 239
+ + SSL G VG+YFSA WC PC L+ Y+KIK+ A ++
Sbjct: 183 -------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQN 228
Query: 240 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTV 298
FE++FVS DR + SF+ YF MPWLA+P+ D + L + + +QGIP L+++ P+G+ +
Sbjct: 229 FEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVI 288
Query: 299 TKQGR 303
T+QGR
Sbjct: 289 TRQGR 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|P97346|NXN_MOUSE Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 149/305 (48%), Gaps = 52/305 (17%)
Query: 22 GEEVKVSDLEGKVTAL---YFSANWYPPCGNFTGVLVDVYEELRNNGSD----------- 67
GEEV V L + AL YF + PC + L Y LR + +
Sbjct: 18 GEEVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGAGAGAGAA 77
Query: 68 --------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 119
E+VFVSSD+D + ++ MPWLA+PY + K L K+ + IP L+
Sbjct: 78 AEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRVSNIPSLIF 137
Query: 120 LQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG 179
L DAT +++ + G+ ++ E L+ K R+ + L ++
Sbjct: 138 L-------DATTG---KVVCRNGLLVI---RDDPEGLEFPWGPKPFREVIAGPLLRNN-- 182
Query: 180 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 239
+ + SSL G VG+YFSA WC PC L+ Y+KIK+ A ++
Sbjct: 183 -------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQE 228
Query: 240 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTV 298
FE++FVS DR + SF+ YF MPWLA+P+ D + L + + +QGIP L+++ P+G+ +
Sbjct: 229 FEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVI 288
Query: 299 TKQGR 303
T+QGR
Sbjct: 289 TRQGR 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 37/307 (12%)
Query: 3 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELR 62
+S++ V L R+ + ++ +V+ + LYF + PC F L + Y + +
Sbjct: 1 MSEFLVNLLGERLVNGEKAEVDVQALGSRLSLLGLYFGCSLNGPCKQFNASLTEFYSKFK 60
Query: 63 NNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 119
+ E+VF+SSD+D + ++ M W A+P+ D K L K+ + IP LV
Sbjct: 61 KSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPALPFKDRHKKMKLWNKYKVTSIPSLVF 120
Query: 120 LQPYDDKDDATLHDGVELIYK--YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHD 177
+ K +G+ ++ G+ FP+ + E+ ++ RQT +
Sbjct: 121 IDAATGK--VVCRNGLLVVRDDPKGLE-FPWGPKPFAEVVSGPLLRNNRQTTDS------ 171
Query: 178 RGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDAL 237
++L G VG+YFSA WC PC L+ Y+K+K E G
Sbjct: 172 ---------------TALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVK----ETG--- 209
Query: 238 EDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGK 296
+ FE+VFVS DR + SF YF MPWLA+P+ D + L + + +QGIP L+++ EG
Sbjct: 210 QKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGH 269
Query: 297 TVTKQGR 303
+T+QGR
Sbjct: 270 MITRQGR 276
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway. Danio rerio (taxid: 7955) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 399 | ||||||
| 255539056 | 389 | nucleoredoxin, putative [Ricinus communi | 0.962 | 0.987 | 0.748 | 1e-176 | |
| 225459742 | 425 | PREDICTED: probable nucleoredoxin 2 [Vit | 0.942 | 0.884 | 0.780 | 1e-173 | |
| 224083147 | 423 | predicted protein [Populus trichocarpa] | 0.942 | 0.888 | 0.751 | 1e-165 | |
| 449437178 | 410 | PREDICTED: probable nucleoredoxin 2-like | 0.937 | 0.912 | 0.693 | 1e-156 | |
| 449519962 | 410 | PREDICTED: probable nucleoredoxin 2-like | 0.937 | 0.912 | 0.693 | 1e-156 | |
| 356509102 | 423 | PREDICTED: probable nucleoredoxin 2-like | 0.927 | 0.874 | 0.684 | 1e-151 | |
| 255641294 | 423 | unknown [Glycine max] | 0.927 | 0.874 | 0.681 | 1e-151 | |
| 357467067 | 429 | Nucleoredoxin [Medicago truncatula] gi|3 | 0.964 | 0.897 | 0.657 | 1e-148 | |
| 356517692 | 411 | PREDICTED: probable nucleoredoxin 2-like | 0.927 | 0.900 | 0.665 | 1e-146 | |
| 356517694 | 434 | PREDICTED: probable nucleoredoxin 2-like | 0.927 | 0.852 | 0.629 | 1e-143 |
| >gi|255539056|ref|XP_002510593.1| nucleoredoxin, putative [Ricinus communis] gi|223551294|gb|EEF52780.1| nucleoredoxin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 289/386 (74%), Positives = 337/386 (87%), Gaps = 2/386 (0%)
Query: 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 73
R+ + +VKVS+LEGKV LYFSANWYPPC NF VL VYE+L+ NGS+FEVVFV
Sbjct: 6 RLPLALHLRYKVKVSELEGKVIGLYFSANWYPPCRNFNQVLAGVYEQLKENGSNFEVVFV 65
Query: 74 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133
SSDE+L+AFNNYRA MPWL++P+SDLETKKAL+RKF+IEG+PCLV+LQP DDK++ATLHD
Sbjct: 66 SSDENLDAFNNYRALMPWLSIPFSDLETKKALDRKFNIEGVPCLVILQPKDDKEEATLHD 125
Query: 134 GVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVS 193
GV+L+Y++G++AFPFTKE+LEEL+ +EKEKHE QTL NLLTNHDR YL HP ++VPV+
Sbjct: 126 GVDLLYRFGVQAFPFTKERLEELKMQEKEKHESQTLTNLLTNHDRDYLFAHPAPKQVPVA 185
Query: 194 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253
SL+GKT+GL+FSA+WC P KF PKL+SIY KIKQ L E+ EDFE+VFVSTDRDQ
Sbjct: 186 SLIGKTIGLFFSAQWCRPGMKFTPKLISIYHKIKQMLRERES--EDFEIVFVSTDRDQEG 243
Query: 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENA 313
F+SYF TMPWLALPFGDPTIK LTKYFDVQGIPCL+IIGP GKT+TK GRNLINLYQENA
Sbjct: 244 FDSYFNTMPWLALPFGDPTIKTLTKYFDVQGIPCLIIIGPNGKTITKNGRNLINLYQENA 303
Query: 314 YPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWA 373
YPFTEAK+E LEKQMEEE K+LPRSE+H+GH+HELNLV+EGTGGGP+ICCDCDEQGSGWA
Sbjct: 304 YPFTEAKVELLEKQMEEEFKSLPRSEYHVGHKHELNLVTEGTGGGPYICCDCDEQGSGWA 363
Query: 374 YQCLECGYEVHPKCVRAVDRGSMIQR 399
YQCLECGYEVHPKCVR V+ GS R
Sbjct: 364 YQCLECGYEVHPKCVRVVEPGSTRAR 389
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459742|ref|XP_002285895.1| PREDICTED: probable nucleoredoxin 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 295/378 (78%), Positives = 338/378 (89%), Gaps = 2/378 (0%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G++VKVS+L KV LYFSANWY PC FT VL YE+L++ G+ FE+VFVSSDED +A
Sbjct: 50 GQQVKVSELNDKVIGLYFSANWYAPCRKFTQVLAGAYEQLKSCGAGFEIVFVSSDEDSDA 109
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F+N+RACMPWLAVP+SDLETKKALNRKFDIEGIPCLV+LQP D+KD+ATLHDGVELIY+Y
Sbjct: 110 FDNFRACMPWLAVPFSDLETKKALNRKFDIEGIPCLVILQPNDNKDEATLHDGVELIYRY 169
Query: 142 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVG 201
G+ AFPFTK +LEEL+KEE+EKHE QTL NLLTNH+R +LLG P ++VP+SSL+GKT+G
Sbjct: 170 GVNAFPFTKVRLEELRKEEREKHESQTLPNLLTNHNRDFLLGRPTAKQVPISSLIGKTIG 229
Query: 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261
LYFSA+WC+P KF PKL+SIYQKIKQ LV+ D EDFE+VFVS+DRDQ SF+SYFGTM
Sbjct: 230 LYFSAQWCLPGVKFTPKLISIYQKIKQTLVD--DNEEDFEIVFVSSDRDQPSFDSYFGTM 287
Query: 262 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKL 321
PWLA+PFGDPTIK LTKYFDVQGIPCLVI+GP+GKTVTKQGR LINLYQENAYPFTEAKL
Sbjct: 288 PWLAVPFGDPTIKTLTKYFDVQGIPCLVILGPDGKTVTKQGRYLINLYQENAYPFTEAKL 347
Query: 322 EFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGY 381
E LEKQM+EEAK+LPRSE+H GHRHEL LVSEGTGGGPFICCDCDEQG GWAYQCLECGY
Sbjct: 348 ELLEKQMDEEAKSLPRSEYHAGHRHELTLVSEGTGGGPFICCDCDEQGLGWAYQCLECGY 407
Query: 382 EVHPKCVRAVDRGSMIQR 399
EVHPKC+R VDRGS ++R
Sbjct: 408 EVHPKCMRVVDRGSTLER 425
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083147|ref|XP_002306954.1| predicted protein [Populus trichocarpa] gi|222856403|gb|EEE93950.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/378 (75%), Positives = 335/378 (88%), Gaps = 2/378 (0%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSDEDLN 80
G +VKVSDLEGKV LYFSANWY PC +FT VL+ Y++L++NGS+FE+VFVSSDEDL+
Sbjct: 46 GTQVKVSDLEGKVLGLYFSANWYAPCRSFTSQVLIGAYQDLKSNGSNFEIVFVSSDEDLD 105
Query: 81 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK 140
AFNNYRA MPWL++P+SDLETKKALN KFD+E IPCLV+L P D+KD+ATLHDGVEL+++
Sbjct: 106 AFNNYRANMPWLSIPFSDLETKKALNSKFDVEAIPCLVILHPKDNKDEATLHDGVELLHR 165
Query: 141 YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 200
+G++AFPFTKE+LEEL+ EEKEKHERQTL NLL H+R YLLGHP +VPV+SLVGKT+
Sbjct: 166 FGVQAFPFTKERLEELKLEEKEKHERQTLTNLLICHNRDYLLGHPAPRQVPVASLVGKTI 225
Query: 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 260
GLYFS+ WC+P KF PKL+SIYQKIKQ LV KG+ +DFE+VFVS+DRDQ F+SYF +
Sbjct: 226 GLYFSSHWCLPGGKFTPKLISIYQKIKQMLVNKGND-DDFEIVFVSSDRDQAEFDSYFNS 284
Query: 261 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 320
MPWLALPFGDP K L K+FDV+GIPCLVI+GP+GKTV+K GRNLINLYQENAYPFTEA+
Sbjct: 285 MPWLALPFGDPANKTLAKHFDVKGIPCLVILGPDGKTVSKHGRNLINLYQENAYPFTEAQ 344
Query: 321 LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 380
++ LEKQM+EEA++LPRS+ H GHRHEL LVSEGTGGGPFICCDCDEQGSGWAYQCLECG
Sbjct: 345 VDLLEKQMDEEAQSLPRSKNHAGHRHELTLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 404
Query: 381 YEVHPKCVRAVDRGSMIQ 398
YEVHPKCVRAVDRGSM +
Sbjct: 405 YEVHPKCVRAVDRGSMAE 422
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437178|ref|XP_004136369.1| PREDICTED: probable nucleoredoxin 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 262/378 (69%), Positives = 317/378 (83%), Gaps = 4/378 (1%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +VKVS+L+GKV LYFSANWYPPC NF +LV YE+L++NGS+FEVV+VSSDED +A
Sbjct: 36 GAQVKVSNLDGKVLGLYFSANWYPPCRNFNQILVRTYEKLQDNGSNFEVVYVSSDEDSDA 95
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD-ATLHDGVELIYK 140
FN YRA MPW A+P+SDLETK ALNRKF IEGIPCL++LQP + KD+ ATLH+GVE++Y+
Sbjct: 96 FNEYRASMPWPAIPFSDLETKIALNRKFGIEGIPCLIILQPRESKDETATLHEGVEVVYR 155
Query: 141 YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 200
YG+ AFPFT+E+LE+L++E++EK E QTL+ LLTN+ R YL H ++VPV SLVGKTV
Sbjct: 156 YGVDAFPFTQERLEQLKEEDREKEENQTLVTLLTNNYRDYLFAHSFPKQVPVVSLVGKTV 215
Query: 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 260
GLYFSA+WC+P F PKL+S+Y KIK+ + K D EDFE+VFVS+DRD+ SF SYFG+
Sbjct: 216 GLYFSAKWCLPG-MFTPKLISVYSKIKRMVEMKED--EDFEIVFVSSDRDEDSFHSYFGS 272
Query: 261 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 320
MPWL LP+GDP IKEL K+FDVQGIPCL+I+ P GKT+TKQGRNLINLY+ENAYPFTEA+
Sbjct: 273 MPWLGLPYGDPMIKELAKHFDVQGIPCLIILAPNGKTITKQGRNLINLYRENAYPFTEAR 332
Query: 321 LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 380
LE L K+M EEAK LP S H+GHRHELNLVSEG GGGPFICC+C+EQGSGWAYQCLECG
Sbjct: 333 LEELVKEMGEEAKKLPTSVRHVGHRHELNLVSEGNGGGPFICCECNEQGSGWAYQCLECG 392
Query: 381 YEVHPKCVRAVDRGSMIQ 398
+EVHPKCV +R S I
Sbjct: 393 FEVHPKCVEMNNRNSPIN 410
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519962|ref|XP_004167003.1| PREDICTED: probable nucleoredoxin 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 262/378 (69%), Positives = 317/378 (83%), Gaps = 4/378 (1%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +VKVS+L+GKV LYFSANWYPPC NF +LV YE+L++NGS+FEVV+VSSDED +A
Sbjct: 36 GAQVKVSNLDGKVLGLYFSANWYPPCRNFNQILVRTYEKLQDNGSNFEVVYVSSDEDSDA 95
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD-ATLHDGVELIYK 140
FN YRA MPW A+P+SDLETK ALNRKF IEGIPCL++LQP + KD+ ATLH+GVE++Y+
Sbjct: 96 FNEYRASMPWPAIPFSDLETKIALNRKFGIEGIPCLIILQPRESKDETATLHEGVEVVYR 155
Query: 141 YGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 200
YG+ AFPFT+E+LE+L++E++EK E QTL+ LLTN+ R YL H ++VPV SLVGKTV
Sbjct: 156 YGVDAFPFTQERLEQLKEEDREKEENQTLVTLLTNNYRDYLFAHSFPKQVPVVSLVGKTV 215
Query: 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 260
GLYFSA+WC+P F PKL+S+Y KIK+ + K D EDFE+VFVS+DRD+ SF SYFG+
Sbjct: 216 GLYFSAKWCLPG-MFTPKLISVYSKIKRMVEMKED--EDFEIVFVSSDRDEDSFHSYFGS 272
Query: 261 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 320
MPWL LP+GDP IKEL K+FDVQGIPCL+I+ P GKT+TKQGRNLINLY+ENAYPFTEA+
Sbjct: 273 MPWLGLPYGDPMIKELAKHFDVQGIPCLIILAPNGKTITKQGRNLINLYRENAYPFTEAR 332
Query: 321 LEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECG 380
LE L K+M EEAK LP S H+GHRHELNLVSEG GGGPFICC+C+EQGSGWAYQCLECG
Sbjct: 333 LEELVKEMGEEAKKLPTSVRHVGHRHELNLVSEGNGGGPFICCECNEQGSGWAYQCLECG 392
Query: 381 YEVHPKCVRAVDRGSMIQ 398
+EVHPKCV +R S I
Sbjct: 393 FEVHPKCVEMNNRNSPIN 410
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509102|ref|XP_003523291.1| PREDICTED: probable nucleoredoxin 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/374 (68%), Positives = 312/374 (83%), Gaps = 4/374 (1%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +VKVSDLEGKV L F+ANWYPPC FT VL +YEEL++ FE+V+VSSDEDLNA
Sbjct: 40 GAQVKVSDLEGKVVGLLFAANWYPPCRGFTQVLAGIYEELKSRVPQFEIVYVSSDEDLNA 99
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
FN++ MPW+A+P+SDLETKK+L RKFD+E +PCL++LQP D K+ AT+ DGVELIY+Y
Sbjct: 100 FNSFYGSMPWIAIPFSDLETKKSLTRKFDVEAVPCLILLQPDDRKEHATVRDGVELIYRY 159
Query: 142 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD--EKVPVSSLVGKT 199
GI+A+PF+K++LE+LQKE+K K + QTL NLL NH R Y+L H +KVPV+SLVGKT
Sbjct: 160 GIQAYPFSKDRLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKVPVASLVGKT 219
Query: 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 259
+GLYFSA WC+PC KF PKL+S+Y+KIK L EKG+ EDFEVV +S+DRDQ SF+SY+
Sbjct: 220 IGLYFSAEWCVPCAKFTPKLISVYEKIKHELAEKGE--EDFEVVLISSDRDQASFDSYYS 277
Query: 260 TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 319
TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T GR+LINLYQENAYPFT+A
Sbjct: 278 TMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTKA 337
Query: 320 KLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 379
K+E LEKQ+EEEAK LP +H GHRH+LNLVS+G GGGPFICC CDEQGS WAYQCL+C
Sbjct: 338 KVEELEKQLEEEAKGLPALVYHQGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQC 397
Query: 380 GYEVHPKCVRAVDR 393
GYEVHPKCVR V+R
Sbjct: 398 GYEVHPKCVRTVER 411
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255641294|gb|ACU20924.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/374 (68%), Positives = 312/374 (83%), Gaps = 4/374 (1%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +VKVSDLEGKV L F+ANWYPPC FT VL +YEEL++ FE+V+VSSDEDLNA
Sbjct: 40 GAQVKVSDLEGKVVGLLFAANWYPPCRGFTQVLAGIYEELKSRVPQFEIVYVSSDEDLNA 99
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
FN++ MPW+A+P+SDLETKK+L RKFD+E +PCL++LQP D K+ AT+ DG+ELIY+Y
Sbjct: 100 FNSFYGSMPWIAIPFSDLETKKSLTRKFDVEAVPCLILLQPDDRKEHATVRDGIELIYRY 159
Query: 142 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD--EKVPVSSLVGKT 199
GI+A+PF+K++LE+LQKE+K K + QTL NLL NH R Y+L H +KVPV+SLVGKT
Sbjct: 160 GIQAYPFSKDRLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKVPVASLVGKT 219
Query: 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 259
+GLYFSA WC+PC KF PKL+S+Y+KIK L EKG+ EDFEVV +S+DRDQ SF+SY+
Sbjct: 220 IGLYFSAEWCVPCAKFTPKLISVYEKIKHELAEKGE--EDFEVVLISSDRDQASFDSYYS 277
Query: 260 TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 319
TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T GR+LINLYQENAYPFT+A
Sbjct: 278 TMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTKA 337
Query: 320 KLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 379
K+E LEKQ+EEEAK LP +H GHRH+LNLVS+G GGGPFICC CDEQGS WAYQCL+C
Sbjct: 338 KVEELEKQLEEEAKGLPALVYHQGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQC 397
Query: 380 GYEVHPKCVRAVDR 393
GYEVHPKCVR V+R
Sbjct: 398 GYEVHPKCVRTVER 411
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467067|ref|XP_003603818.1| Nucleoredoxin [Medicago truncatula] gi|355492866|gb|AES74069.1| Nucleoredoxin [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/388 (65%), Positives = 307/388 (79%), Gaps = 3/388 (0%)
Query: 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS 66
Y+ + R G +VK+S+LEGKV L F+ANWYPPC FT +L+ +YE+L++N
Sbjct: 39 YLLASKDRDFLLSSTGTQVKISELEGKVVGLLFAANWYPPCRGFTQLLIGIYEQLKSNIP 98
Query: 67 DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK 126
FE+V+VSSDEDL+AFN + MPWLA+P+SDLETKKALNRK+D+EGIPCLV+LQP K
Sbjct: 99 QFEIVYVSSDEDLDAFNGFYGNMPWLAIPFSDLETKKALNRKYDVEGIPCLVMLQPDHSK 158
Query: 127 DDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP 186
+ATL DGVELIY+YG++A+PF+KE+LE+L E+EK E QTL NLL N+ R Y+L H
Sbjct: 159 GEATLRDGVELIYRYGVQAYPFSKERLEQLHVAEREKLENQTLANLLANNHRDYVLSHTG 218
Query: 187 D---EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 243
+VPV+SLVGKT+GLYFSA WC+PC KF PKL+++YQ IKQ L EK D EDFE+V
Sbjct: 219 TGLLTQVPVASLVGKTIGLYFSAGWCVPCTKFTPKLINVYQIIKQELAEKQDPHEDFEIV 278
Query: 244 FVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303
VS DRDQ SF+SY+ MPWLALPFGDP IK L ++FDVQGIPCLVIIGP+GKT+T GR
Sbjct: 279 LVSNDRDQESFDSYYNIMPWLALPFGDPEIKNLARHFDVQGIPCLVIIGPDGKTITIHGR 338
Query: 304 NLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICC 363
NLINLYQENAYPFT +K+E LEKQ+EEEAK+LP H GH H LNLVS+G GGGPFICC
Sbjct: 339 NLINLYQENAYPFTASKVEQLEKQLEEEAKDLPNLVHHEGHHHGLNLVSDGNGGGPFICC 398
Query: 364 DCDEQGSGWAYQCLECGYEVHPKCVRAV 391
CDEQGS WAYQCL+CGYEVHPKCV V
Sbjct: 399 VCDEQGSNWAYQCLQCGYEVHPKCVTTV 426
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517692|ref|XP_003527520.1| PREDICTED: probable nucleoredoxin 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/374 (66%), Positives = 307/374 (82%), Gaps = 4/374 (1%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +VKVSDLEG+V L F+ANWYPPC FT +LV +YEEL++ E+V+VSSDE+L+A
Sbjct: 35 GAQVKVSDLEGRVVGLLFAANWYPPCRGFTQILVGIYEELKSRVPQLEIVYVSSDENLDA 94
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
FN++ MPWLA+P+SDLETKK+L RK+D+E +PCL++LQP D K+ T+ DGVELIY+Y
Sbjct: 95 FNSFYGNMPWLAIPFSDLETKKSLTRKYDVEAVPCLILLQPDDRKEHVTVRDGVELIYRY 154
Query: 142 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD--EKVPVSSLVGKT 199
GI+A+PF+ E+LE+LQKE+K K + QTL NLL NH R Y+L H +KVPV+ LVGKT
Sbjct: 155 GIQAYPFSNERLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKVPVAWLVGKT 214
Query: 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 259
+GLYFSA WC+PC KF PKL+S+Y+KIK L KG+ EDFEVV +S+DRDQ SF+SY+
Sbjct: 215 IGLYFSAEWCVPCAKFTPKLISVYEKIKHELAGKGE--EDFEVVLISSDRDQASFDSYYS 272
Query: 260 TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 319
TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T GR+LINLYQENAYPFT A
Sbjct: 273 TMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTNA 332
Query: 320 KLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 379
K+E LEKQ+EEEAK LP +H GHRH+LNLVS+G GGGPFICC CDEQGS WAYQCL+C
Sbjct: 333 KVEELEKQLEEEAKGLPALVYHEGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQC 392
Query: 380 GYEVHPKCVRAVDR 393
GYEVHPKCVR V+R
Sbjct: 393 GYEVHPKCVRTVER 406
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517694|ref|XP_003527521.1| PREDICTED: probable nucleoredoxin 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/397 (62%), Positives = 308/397 (77%), Gaps = 27/397 (6%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +VKVSDLEG+V L F+ANWYPPC FT +LV +YEEL++ E+V+VSSDE+L+A
Sbjct: 35 GAQVKVSDLEGRVVGLLFAANWYPPCRGFTQILVGIYEELKSRVPQLEIVYVSSDENLDA 94
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
FN++ MPWLA+P+SDLETKK+L RK+D+E +PCL++LQP D K+ T+ DGVELIY+Y
Sbjct: 95 FNSFYGNMPWLAIPFSDLETKKSLTRKYDVEAVPCLILLQPDDRKEHVTVRDGVELIYRY 154
Query: 142 GIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH----------------- 184
GI+A+PF+ E+LE+LQKE+K K + QTL NLL NH R Y+L H
Sbjct: 155 GIQAYPFSNERLEQLQKEDKVKRDNQTLTNLLANHHRDYVLSHTHTGLKKFYLNCMQRIM 214
Query: 185 ---PPD-----EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDA 236
P D +VPV+ LVGKT+GLYFSA WC+PC KF PKL+S+Y+KIK L KG+
Sbjct: 215 DPVPGDGCCSCTQVPVAWLVGKTIGLYFSAEWCVPCAKFTPKLISVYEKIKHELAGKGE- 273
Query: 237 LEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 296
EDFEVV +S+DRDQ SF+SY+ TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GK
Sbjct: 274 -EDFEVVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGK 332
Query: 297 TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTG 356
T+T GR+LINLYQENAYPFT AK+E LEKQ+EEEAK LP +H GHRH+LNLVS+G G
Sbjct: 333 TITVHGRSLINLYQENAYPFTNAKVEELEKQLEEEAKGLPALVYHEGHRHDLNLVSDGNG 392
Query: 357 GGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDR 393
GGPFICC CDEQGS WAYQCL+CGYEVHPKCVR V+R
Sbjct: 393 GGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVRTVER 429
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 399 | ||||||
| TAIR|locus:2195623 | 578 | AT1G60420 [Arabidopsis thalian | 0.874 | 0.603 | 0.432 | 1.4e-73 | |
| TAIR|locus:2128141 | 392 | AT4G31240 [Arabidopsis thalian | 0.877 | 0.892 | 0.4 | 1.9e-67 | |
| MGI|MGI:109331 | 435 | Nxn "nucleoredoxin" [Mus muscu | 0.313 | 0.287 | 0.417 | 1.4e-22 | |
| UNIPROTKB|A6QLU8 | 435 | NXN "Nucleoredoxin" [Bos tauru | 0.313 | 0.287 | 0.417 | 2e-22 | |
| RGD|1310489 | 435 | Nxn "nucleoredoxin" [Rattus no | 0.313 | 0.287 | 0.417 | 4.3e-22 | |
| UNIPROTKB|Q6DKJ4 | 435 | NXN "Nucleoredoxin" [Homo sapi | 0.313 | 0.287 | 0.409 | 6.4e-22 | |
| UNIPROTKB|Q6GM16 | 414 | nxn "Nucleoredoxin" [Xenopus l | 0.295 | 0.285 | 0.426 | 1.1e-20 | |
| ZFIN|ZDB-GENE-050522-75 | 418 | nxn "nucleoredoxin" [Danio rer | 0.270 | 0.258 | 0.427 | 2.3e-31 | |
| UNIPROTKB|I3LEF2 | 328 | NXN "Uncharacterized protein" | 0.313 | 0.381 | 0.417 | 2.3e-23 | |
| UNIPROTKB|F1NG23 | 328 | NXN "Uncharacterized protein" | 0.310 | 0.378 | 0.406 | 2.6e-22 |
| TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 159/368 (43%), Positives = 217/368 (58%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +V VS+LEGK L FS Y C T LV+ Y +L+ N DFE+V +S ++D +
Sbjct: 193 GNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISLEDDEES 252
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYK 140
FN PWLA+P++D K L R F + +P LV+L P D T H V E I
Sbjct: 253 FNQDFKTKPWLALPFNDKSGSK-LARHFMLSTLPTLVILGP----DGKTRHSNVAEAIDD 307
Query: 141 YGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTV 200
YG+ A+PFT QTL +LL + D Y+LG KV VS LVGKT+
Sbjct: 308 YGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKD-GAKVLVSDLVGKTI 366
Query: 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 260
+YFSA WC PC F PKL+ +Y++IK E+ +A FE++F+S+DRDQ SF+ Y+
Sbjct: 367 LMYFSAHWCPPCRAFTPKLVEVYKQIK----ERNEA---FELIFISSDRDQESFDEYYSQ 419
Query: 261 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 320
MPWLALPFGDP L K F V GIP L +GP G+TVTK+ R+L+ + +AYPFTE +
Sbjct: 420 MPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEER 479
Query: 321 LEFLEKQMEEEAKNLPRSEFHIGHR-HELNLVSEGTGGGPFICCDCDEQGSGWAYQCLEC 379
L+ +E + +E AK+ P+ H+ H HEL L T + C C+E+G+ W+Y C EC
Sbjct: 480 LKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDKCEEEGTIWSYHCDEC 535
Query: 380 GYEVHPKC 387
+++H KC
Sbjct: 536 DFDLHAKC 543
|
|
| TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 146/365 (40%), Positives = 203/365 (55%)
Query: 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83
EV + + GK L+FSA W PC +FT L+ +YE L+N G + E++FVS D D+ +F
Sbjct: 35 EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNRGEELEIIFVSFDHDMTSFY 94
Query: 84 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 143
+ CMPWLAVP++ L L K+ I IP LV L Y D + + D + LI YG
Sbjct: 95 EHFWCMPWLAVPFN-LSLLNKLRDKYGISRIPSLVPL--YSD-EISVAEDVIGLIEDYGS 150
Query: 144 RAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLY 203
AFPFT L LLT+ R Y++ KV VS LVGKT+GLY
Sbjct: 151 EAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARN-GSKVLVSKLVGKTIGLY 209
Query: 204 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 263
F A WC P F +L+ +Y ++ +KG FEV+ +STDRD F MPW
Sbjct: 210 FGAHWCPPFRSFTSQLVDVYNELATT--DKGS----FEVILISTDRDSREFNINMTNMPW 263
Query: 264 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 323
LA+P+ D T ++L + F+V+ IP LVIIGPE KTVT R +++LY ++PFTE+++
Sbjct: 264 LAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESRIVE 323
Query: 324 LEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEV 383
L+ +++E +LPR H HEL L ++C C +QG WA+ C C Y++
Sbjct: 324 LKACLKKEGDSLPRKVKDNKHEHELKLDMAKA----YVCDFCKKQGRFWAFSCNACDYDL 379
Query: 384 HPKCV 388
HP CV
Sbjct: 380 HPTCV 384
|
|
| MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 53/127 (41%), Positives = 78/127 (61%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G +FE++FVS+D +
Sbjct: 183 GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEES 242
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F Y + MPWLAVPY+D + LNR + I+GIP L+VL P + T VE++
Sbjct: 243 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDE 300
Query: 142 GIRAFPF 148
R FP+
Sbjct: 301 DCREFPW 307
|
|
| UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 53/127 (41%), Positives = 78/127 (61%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G FE++FVS+D ++
Sbjct: 183 GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDS 242
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F Y + MPWLAVPY+D + LNR + I+GIP L+VL P + T VE++
Sbjct: 243 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDE 300
Query: 142 GIRAFPF 148
R FP+
Sbjct: 301 DCRGFPW 307
|
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| RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 53/127 (41%), Positives = 77/127 (60%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G FE++FVS+D +
Sbjct: 183 GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEES 242
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F Y + MPWLAVPY+D + LNR + I+GIP L+VL P + T VE++
Sbjct: 243 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDE 300
Query: 142 GIRAFPF 148
R FP+
Sbjct: 301 DCREFPW 307
|
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| UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 52/127 (40%), Positives = 78/127 (61%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G +FE++FVS+D +
Sbjct: 183 GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEES 242
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F Y + MPWLAVPY+D + LNR + I+GIP L++L P + T VE++
Sbjct: 243 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEV--ITRQGRVEVLNDE 300
Query: 142 GIRAFPF 148
R FP+
Sbjct: 301 DCREFPW 307
|
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| UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 52/122 (42%), Positives = 73/122 (59%)
Query: 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 87
S LEG +YFSA W PPC + T VLV+ Y +++ +G FE+V VS+D +F Y +
Sbjct: 168 STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFS 227
Query: 88 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-VELIYKYGIRAF 146
MPWLAVPYSD + LNR + I+GIP L++L P K + G VE++ + F
Sbjct: 228 EMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP---KGEVITRQGRVEVLRDIDCKEF 284
Query: 147 PF 148
P+
Sbjct: 285 PW 286
|
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| ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 253 (94.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 50/117 (42%), Positives = 72/117 (61%)
Query: 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 252
++L G VG+YFSA WC PC L+ Y+K+K E G + FE+VFVS DR +
Sbjct: 172 TALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVK----ETG---QKFEIVFVSADRSEE 224
Query: 253 SFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPEGKTVTKQGR-NLIN 307
SF YF MPWLA+P+ D + L + + +QGIP L+++ EG +T+QGR ++N
Sbjct: 225 SFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEILN 281
|
|
| UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 53/127 (41%), Positives = 77/127 (60%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G ++ S LEG +YFSA+W PPC + T VLV+ Y +++ G FE++FVS+D ++
Sbjct: 76 GPALESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDS 135
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F Y + MPWLAVPY+D + LNR + I+GIP L+VL P + T VE++
Sbjct: 136 FKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDE 193
Query: 142 GIRAFPF 148
R FP+
Sbjct: 194 DCRGFPW 200
|
|
| UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 52/128 (40%), Positives = 78/128 (60%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ + S LEG +YFSA+W PPC + T VLV+ Y +++ G FE++FVS+D ++
Sbjct: 76 GQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEILFVSADRSEDS 135
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-VELIYK 140
F Y + MPW+AVPY+D + LNR + I+GIP L+VL D + + G VE++
Sbjct: 136 FKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVL---DSQGEVITRQGRVEVLND 192
Query: 141 YGIRAFPF 148
R FP+
Sbjct: 193 IECREFPW 200
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0JIL1 | NRX2_ORYSJ | 1, ., 8, ., 1, ., 8 | 0.4892 | 0.8997 | 0.9111 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00015497001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (425 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 399 | |||
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 1e-53 | |
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 5e-51 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 3e-48 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 5e-41 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 1e-26 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 6e-22 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 7e-11 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 8e-11 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 3e-08 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 5e-08 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 7e-06 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 7e-06 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 2e-05 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 3e-05 | |
| smart00109 | 50 | smart00109, C1, Protein kinase C conserved region | 7e-05 | |
| cd00029 | 50 | cd00029, C1, Protein kinase C conserved region 1 ( | 4e-04 | |
| cd02953 | 104 | cd02953, DsbDgamma, DsbD gamma family; DsbD gamma | 7e-04 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 8e-04 | |
| pfam00130 | 53 | pfam00130, C1_1, Phorbol esters/diacylglycerol bin | 0.002 | |
| cd02950 | 142 | cd02950, TxlA, TRX-like protein A (TxlA) family; T | 0.002 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 0.004 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 1e-53
Identities = 68/139 (48%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 179 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALE 238
+LL + KVPVSSL GKTVGLYFSA WC PC F PKL+ Y+K+K E G +
Sbjct: 1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK----ESG---K 52
Query: 239 DFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKT 297
+FE+VF+S DRD+ SF YF MPWLA+PF D L + F ++GIP L+I+ +G+
Sbjct: 53 NFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEV 112
Query: 298 VTKQGRNLINLYQENAYPF 316
VT R L+ Y +A+PF
Sbjct: 113 VTTDARELVLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 5e-51
Identities = 66/127 (51%), Positives = 85/127 (66%), Gaps = 3/127 (2%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G +V VS LEGK LYFSA+W PPC FT LV+ YE+L+ +G +FE+VF+S D D +
Sbjct: 8 GGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEES 67
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
FN+Y + MPWLAVP+SD E + LNR F IEGIP L++L D + D EL+ +Y
Sbjct: 68 FNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIIL---DADGEVVTTDARELVLEY 124
Query: 142 GIRAFPF 148
G AFPF
Sbjct: 125 GADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-48
Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
+ VPVS+L GKTVGLYFSA WC PC F PKL+ Y+K+K + ++FE+VFVS
Sbjct: 7 EGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK-------EEGKNFEIVFVS 59
Query: 247 TDRDQTSFESYFGTM-PWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPEGKTVTKQGRN 304
DR + SF YF M PWLA+PF D ++E L K F V+GIP LV++ P+G VT R+
Sbjct: 60 RDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARD 119
Query: 305 LI-NLYQENAYPF 316
+ A+P+
Sbjct: 120 EVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-41
Identities = 59/129 (45%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 23 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82
V VS LEGK LYFSA+W PPC FT LV+ YE+L+ G +FE+VFVS D +F
Sbjct: 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESF 67
Query: 83 NNYRACM-PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH-DGVELIYK 140
N Y + M PWLAVP+ D E ++ L ++F +EGIP LVVL+P D + + + + +
Sbjct: 68 NEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKP----DGDVVTTNARDEVEE 123
Query: 141 -YGIRAFPF 148
G AFP+
Sbjct: 124 DPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-26
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
GK V LYF A WC PC F P+L +Y+K+K+ E+V+VS DRD+ ++
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLKKP---------KVEIVYVSLDRDEEEWKK 51
Query: 257 YFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 296
Y MP WL +PFGD EL + + V+ IP LV++ +G+
Sbjct: 52 YLKKMPKDWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 6e-22
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMP- 90
GKV LYF A+W PPC FT L ++YE + E+V+VS D D + Y MP
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYE--KLKKPKVEIVYVSLDRDEEEWKKYLKKMPK 58
Query: 91 -WLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 122
WL VP+ D + + L R + ++ IP LV+L
Sbjct: 59 DWLNVPFGD-KERNELLRLYGVKAIPTLVLLDK 90
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-11
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNL-VEKGDALEDFEVVFVS 246
E+ V+ L + + L+F A C+ F PKL + ++ V++ L +V+VS
Sbjct: 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLA---LVYVS 72
Query: 247 TDRDQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302
D+ + ES+ MP WL LPF D +EL F V+ +P +V++ P+G +
Sbjct: 73 MDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANA 130
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 8e-11
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
+ V +S L GK V + F A WC PC MP+L ++ ++ K + EVV V+
Sbjct: 9 GKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---------DGVEVVGVN 59
Query: 247 TDRDQTS-FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301
D D + +++ + P EL K + V+G+P +I +G+ +
Sbjct: 60 VDDDDPAAVKAFLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-08
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
GK V + F+ C C+K +LL ++ E ++F V++V+ D +
Sbjct: 5 GKPVLVVFTDPDCPYCKKLHKELLKD-----PDVQEYLK--DNFVVIYVNVDDSK----- 52
Query: 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300
+ KEL + + V+G P +V + +GK V +
Sbjct: 53 -----EVTDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEVAR 91
|
Length = 105 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-08
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 23 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDE 77
E V+ LE +V L+F A P C F L D + L + + +V+VS D+
Sbjct: 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ 75
Query: 78 DLNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV 135
++ MP WL +P+ D E ++ L +F +E +P +VVL+P D + V
Sbjct: 76 SEQQQESFLKDMPKKWLFLPFED-EFRRELEAQFSVEELPTVVVLKP---DGDVLAANAV 131
Query: 136 ELIYKYGIRAF 146
+ I + G F
Sbjct: 132 DEILRLGPACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-06
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 22 GEEVKVSDLEGKVTALYF-SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--ED 78
G+EV +SD +GK L+F ++ P C L D+YEE + G EV+ VS D E
Sbjct: 15 GKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG--VEVLGVSVDSPES 72
Query: 79 LNAFNN-YRACMPWLAVPYSDLETKKALNRKFDI 111
F P L SD + + + +
Sbjct: 73 HKKFAEKLGLPFPLL----SD--PDGEVAKAYGV 100
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 7e-06
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 24/119 (20%)
Query: 188 EKVPVSSLVGKTVGLYF-SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
++V +S GK V L+F + C +P L + + + G EV+ VS
Sbjct: 16 KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPAL----ADLYEEFKKLG-----VEVLGVS 66
Query: 247 TDR--DQTSF-ESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGK 296
D F E P L+ DP E+ K + V + +I P+GK
Sbjct: 67 VDSPESHKKFAEKLGLPFPLLS----DPD-GEVAKAYGVLNEEEGLALRTTFVIDPDGK 120
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78
G+ V +SDL+GKV + F A+W PPC L + +E +++G EVV V+ D+D
Sbjct: 9 GKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDD 63
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+K+ + L GK V L F WC PCEK MP + +Y K K EKG E++ V+
Sbjct: 52 KKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK----EKG-----VEIIAVNV 102
Query: 248 DRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298
D + + +++ +G L P +++ + V +P +I +GK V
Sbjct: 103 DETELAVKNFVNRYG----LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVV 152
|
Length = 173 |
| >gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 7e-05
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 344 HRHELNLVSEGTGGGPFICCDCDEQ---GSGWAYQCLECGYEVHPKCVRAV 391
H+H T P CC C + +C EC + H KC V
Sbjct: 1 HKHV-----FRTFTKPTFCCVCRKSIWGSFKQGLRCSECKVKCHKKCADKV 46
|
Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains. Length = 50 |
| >gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 4e-04
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 353 EGTGGGPFICCDCDEQ---GSGWAYQCLECGYEVHPKCVRAV 391
+ P C C + +C C + H KC V
Sbjct: 5 RKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46
|
Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). Length = 50 |
| >gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 30/101 (29%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
GK V + F+A WC+ C K N E V S Q + +
Sbjct: 11 GKPVFVDFTADWCVTC--------------KVN-----------EKVVFSDPEVQAALKK 45
Query: 257 YFGTM--PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 295
+ W DP I L K F V G P + GP G
Sbjct: 46 DVVLLRADWTK---NDPEITALLKRFGVFGPPTYLFYGPGG 83
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 8e-04
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 34/95 (35%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
K V + F A WC PC+ P L + L E+ +V FV D D+
Sbjct: 10 AKPVVVDFWAPWCGPCKAIAPVL--------EELAEEYP-----KVKFVKVDVDEN---- 52
Query: 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVII 291
EL + + V+ IP +
Sbjct: 53 -----------------PELAEEYGVRSIPTFLFF 70
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1 domain) | Back alignment and domain information |
|---|
Score = 35.5 bits (82), Expect = 0.002
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 362 CCDCDE---QGSGWAYQCLECGYEVHPKCVRAVD 392
C C E +C CG VH +C V
Sbjct: 14 CDHCGEFLWGLGKQGLKCSWCGLNVHKRCHSLVP 47
|
This domain is also known as the Protein kinase C conserved region 1 (C1) domain. Length = 53 |
| >gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 42/153 (27%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
GK + F A WC C++ P + + QK + +F V ++ D +
Sbjct: 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQV--------NF--VMLNVDNPK----- 64
Query: 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIG----PEGKTVTKQGR-----NLIN 307
WL E+ +Y V GIP V + EG+++ Q + NL
Sbjct: 65 ------WL---------PEIDRY-RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDA 108
Query: 308 LYQENAYPFTEAKLEF--LEKQMEEEAKNLPRS 338
L P+ A + L+ +++ PRS
Sbjct: 109 LVAGEPLPYANAVGQTSELKSPKNPSSQDDPRS 141
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 22 GEEVKVSDLEGKVTALYF-SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 80
G+ V +SD +GK L F + P C L + + + G +VV V++ D
Sbjct: 17 GKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG--VDVVAVNASND-- 72
Query: 81 AFNNYRAC 88
F
Sbjct: 73 PFFVMNFW 80
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 399 | |||
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.92 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.9 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.9 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.89 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.89 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.88 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.84 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.83 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.82 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.82 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.82 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.81 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.81 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.81 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.81 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.81 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.8 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.8 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.8 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.8 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.8 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.8 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.8 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.79 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.79 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.79 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.78 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.78 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.78 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.78 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.78 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.77 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.77 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.77 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.77 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.77 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.77 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.76 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.76 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.76 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.75 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.75 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.75 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.75 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.75 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.74 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.74 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.74 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.74 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.73 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.73 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.73 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.73 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.73 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.73 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.73 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.72 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.72 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.72 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.72 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.71 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.71 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.71 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.71 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.71 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.7 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.7 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.69 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.69 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.69 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.69 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.69 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.69 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.68 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.68 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.67 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.67 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.67 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.67 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.66 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.65 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.65 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.65 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.65 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.64 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.62 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.62 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.6 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.59 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.59 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.59 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.58 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.58 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.56 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.56 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.55 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.54 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.53 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.53 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.51 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.51 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.5 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.5 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.5 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.5 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.5 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.49 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.47 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.47 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.47 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.46 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.46 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.45 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.45 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.45 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.45 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.43 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.39 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.39 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.39 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.38 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.38 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.36 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.36 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.35 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.35 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.35 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.34 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.34 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.34 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.33 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.32 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.32 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.32 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.32 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.31 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.31 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.31 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.3 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.3 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.29 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.29 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.28 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.28 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.28 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.27 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.27 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.27 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.26 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.25 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.25 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.25 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.25 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.24 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.23 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.23 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.23 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.23 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.23 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.22 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.21 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.21 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.21 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.2 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.2 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.19 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.19 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.19 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.19 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.18 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.18 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.18 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.18 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.18 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.18 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.17 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.17 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.17 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.17 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.17 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.16 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.15 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.12 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.11 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.1 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.1 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.1 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.1 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.1 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.09 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.09 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.09 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.08 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.08 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.08 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.08 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.07 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.07 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.07 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.06 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.06 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.06 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.06 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.06 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.05 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.05 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.04 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.04 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 99.04 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.04 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.03 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.02 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.02 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.02 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 99.02 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.02 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.01 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.0 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.0 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.97 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 98.97 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.97 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.95 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.93 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.93 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.93 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.91 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.91 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.9 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.86 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.84 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.84 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.83 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.83 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.82 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.82 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 98.79 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.76 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.73 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.73 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.71 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.71 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.68 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.67 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.67 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.65 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.65 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.64 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.62 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.62 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.61 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.61 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.56 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.56 | |
| PF07649 | 30 | C1_3: C1-like domain; InterPro: IPR011424 This sho | 98.54 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.53 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.52 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.48 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.47 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.47 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.44 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.43 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.42 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.42 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.41 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.4 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.38 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.35 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.35 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.35 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.32 | |
| PF03107 | 30 | C1_2: C1 domain; InterPro: IPR004146 This short do | 98.3 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.29 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.29 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.29 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.23 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.23 | |
| smart00594 | 122 | UAS UAS domain. | 98.22 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.22 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.21 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.18 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.13 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.09 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.08 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.07 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.06 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 97.92 | |
| smart00594 | 122 | UAS UAS domain. | 97.91 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 97.89 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.84 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.81 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 97.73 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.69 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.69 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.68 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.62 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 97.61 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.6 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.58 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.56 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.55 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.48 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.43 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.41 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.4 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.34 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.31 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.29 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.26 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.24 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.17 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.16 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 97.06 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.05 | |
| cd02340 | 43 | ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre | 96.93 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.89 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 96.79 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 96.79 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.7 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 96.67 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 96.58 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 96.57 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.45 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 96.45 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 96.39 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.35 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 96.35 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 96.34 | |
| cd02339 | 45 | ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre | 96.27 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 96.22 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 96.19 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 96.18 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.08 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.0 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 95.98 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 95.88 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 95.81 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 95.77 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 95.76 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 95.68 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 95.66 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 95.57 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 95.55 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 95.5 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 95.5 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 95.28 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 95.22 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 95.11 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 95.08 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 94.82 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 94.81 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 94.77 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 94.71 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 94.67 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 94.64 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 94.62 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 94.61 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 94.56 | |
| cd02249 | 46 | ZZ Zinc finger, ZZ type. Zinc finger present in dy | 94.56 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 94.49 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 94.29 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 94.29 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 94.28 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 94.12 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 94.0 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 93.97 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 93.86 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 93.84 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 93.83 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 93.76 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 93.69 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 93.59 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 93.58 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 93.21 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 93.2 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 92.69 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 92.57 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 92.52 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 92.34 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 92.31 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 92.26 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 92.16 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 92.14 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 92.01 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 91.89 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 91.88 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 91.82 | |
| cd02335 | 49 | ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present | 91.79 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 91.59 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 91.53 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 91.42 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 91.38 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 91.36 | |
| KOG3507 | 62 | consensus DNA-directed RNA polymerase, subunit RPB | 91.25 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 91.19 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 91.17 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 91.16 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 90.95 | |
| PF00130 | 53 | C1_1: Phorbol esters/diacylglycerol binding domain | 90.53 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 90.46 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 90.1 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 90.04 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 89.91 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 89.35 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 89.31 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 89.3 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 88.92 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 88.89 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 88.78 | |
| cd00029 | 50 | C1 Protein kinase C conserved region 1 (C1) . Cyst | 88.73 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 88.56 | |
| cd02343 | 48 | ZZ_EF Zinc finger, ZZ type. Zinc finger present in | 88.41 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 88.27 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 88.26 | |
| cd02341 | 48 | ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present | 88.03 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 87.66 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 87.25 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 86.33 | |
| smart00291 | 44 | ZnF_ZZ Zinc-binding domain, present in Dystrophin, | 86.1 | |
| cd02342 | 43 | ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre | 85.25 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 84.74 | |
| KOG4498 | 197 | consensus Uncharacterized conserved protein [Funct | 84.58 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 82.86 | |
| cd02334 | 49 | ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr | 82.72 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 82.57 | |
| cd02337 | 41 | ZZ_CBP Zinc finger, ZZ type. Zinc finger present i | 82.41 | |
| PF07449 | 107 | HyaE: Hydrogenase-1 expression protein HyaE; Inter | 81.24 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 80.86 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 80.83 |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=180.79 Aligned_cols=130 Identities=51% Similarity=1.004 Sum_probs=118.9
Q ss_pred CcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHH
Q 015833 179 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 258 (399)
Q Consensus 179 ~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 258 (399)
||..+.+|+ .+++++++||+|+|+||++||++|+.++|.|.++++++++. +.+++|++|++|.+.+++++++
T Consensus 1 ~~l~~~~G~-~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-------~~~~~vv~is~d~~~~~~~~~~ 72 (131)
T cd03009 1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-------GKNFEIVFISWDRDEESFNDYF 72 (131)
T ss_pred CcccccCCC-CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-------CCCEEEEEEECCCCHHHHHHHH
Confidence 345588999 99999999999999999999999999999999999999764 3479999999999999999999
Q ss_pred hcCCCcccccCC-chhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCC
Q 015833 259 GTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 316 (399)
Q Consensus 259 ~~~~~~~~p~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 316 (399)
++++|..+|+.. +....+++.|++.++|+++|||++|+++.++++.++..+|..+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 73 SKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 999998888765 5567899999999999999999999999999999999999999997
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-24 Score=178.26 Aligned_cols=124 Identities=27% Similarity=0.537 Sum_probs=106.2
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC--Cccc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP--WLAL 266 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~--~~~~ 266 (399)
.+++++++||+|+|+|||+||++|++++|.|.++|++++++. .-+...+++||+|+.|.+.+.+++|+++++ |+.+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~--~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEF--YVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhc--ccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 567889999999999999999999999999999999887530 000124699999999998888999999988 7777
Q ss_pred ccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCC
Q 015833 267 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 314 (399)
Q Consensus 267 p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 314 (399)
|+..+....+++.|++.++|+++|||++|+|+.+++...+..+|..+|
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 887766779999999999999999999999999999888877775553
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=174.76 Aligned_cols=129 Identities=50% Similarity=0.942 Sum_probs=119.3
Q ss_pred EecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCccccc
Q 015833 17 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 96 (399)
Q Consensus 17 l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~ 96 (399)
|.|.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+.+++|++|++|.+.+.+.++.++++|..+++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 82 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPF 82 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEccc
Confidence 56899999999999999999999999999999999999999999987645699999999999999999999999988888
Q ss_pred CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCC
Q 015833 97 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 148 (399)
Q Consensus 97 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~ 148 (399)
.+.+....+.+.|++.++|+++||++ +|+++.+++.+++..++..+||+
T Consensus 83 ~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 83 SDRERRSRLNRTFKIEGIPTLIILDA---DGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEECC---CCCEEcccHHHHHhhcccccCCC
Confidence 66455578999999999999999999 99999999999999999999986
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=170.34 Aligned_cols=127 Identities=50% Similarity=0.946 Sum_probs=111.4
Q ss_pred ccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhc
Q 015833 181 LLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 260 (399)
Q Consensus 181 ~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 260 (399)
.+|.+ + .+++++++||+++|+||++||++|+.++|.|+++++++++. ..+++|++|++|.+.+++++++++
T Consensus 3 ~~~~~-~-~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~~ 73 (132)
T cd02964 3 LLDGE-G-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFSE 73 (132)
T ss_pred cccCC-c-cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHhc
Confidence 34444 5 89999999999999999999999999999999999999753 247999999999998999999998
Q ss_pred C-CCcccccCC-chhHHHHHhCCCCccceEEEECCCCcEEecccchhhhh-hcccCCCC
Q 015833 261 M-PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINL-YQENAYPF 316 (399)
Q Consensus 261 ~-~~~~~p~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~g~~~~p~ 316 (399)
+ +|..+++.. +....+++.|+|.++|+++|||++|+|+.+++...+.. +|..+||+
T Consensus 74 ~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 74 MPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred CCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 8 688888755 34568889999999999999999999999999888866 89999886
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-23 Score=171.91 Aligned_cols=119 Identities=30% Similarity=0.581 Sum_probs=105.9
Q ss_pred EEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcC-----CCcEEEEEEecCCChHHHHHhHhcCC--Cccccc
Q 015833 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDEDLNAFNNYRACMP--WLAVPY 96 (399)
Q Consensus 24 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~ii~Vs~D~~~~~~~~~~~~~~--~~~~~~ 96 (399)
.++|++++||+|+|+|||+|||+|+.++|.|.+++++++++ ++++++|+||.|.+.+.+.+|+++++ |+.+|+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~ 96 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPF 96 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecc
Confidence 46788999999999999999999999999999999998753 24699999999999999999999887 878887
Q ss_pred CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCC
Q 015833 97 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAF 146 (399)
Q Consensus 97 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~ 146 (399)
.+. ....+.+.|++.++|+++|||+ +|+++..++.+.++++|..+|
T Consensus 97 ~~~-~~~~l~~~y~v~~iPt~vlId~---~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 97 EDE-FRRELEAQFSVEELPTVVVLKP---DGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred cch-HHHHHHHHcCCCCCCEEEEECC---CCcEEeeChHHHHHHHHHHHH
Confidence 553 3368999999999999999999 999999999999999887654
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=166.93 Aligned_cols=126 Identities=47% Similarity=0.863 Sum_probs=111.4
Q ss_pred cCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC-CCcccccC
Q 015833 19 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM-PWLAVPYS 97 (399)
Q Consensus 19 d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~-~~~~~~~~ 97 (399)
|.+ +++++++++||+++|+||++||++|+.++|.|+++++++++.+.+++|++|++|.+.+++.++.+++ +|..+++.
T Consensus 5 ~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 83 (132)
T cd02964 5 DGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFE 83 (132)
T ss_pred cCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccC
Confidence 444 5899999999999999999999999999999999999998763459999999999999999999998 68888886
Q ss_pred ChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhh-cCCCCCCC
Q 015833 98 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK-YGIRAFPF 148 (399)
Q Consensus 98 d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~-~g~~~~p~ 148 (399)
+......+.+.|+|.++|+++||++ +|+++.+++.+.+.. ++..+|||
T Consensus 84 d~~~~~~~~~~~~v~~iPt~~lid~---~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 84 DEELRELLEKQFKVEGIPTLVVLKP---DGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cHHHHHHHHHHcCCCCCCEEEEECC---CCCEEchhHHHHHHhCcccccCCC
Confidence 6444578889999999999999999 999999999776555 89988886
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=160.60 Aligned_cols=119 Identities=29% Similarity=0.470 Sum_probs=106.7
Q ss_pred hhcCCCCccc-C--CCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 173 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 173 ~g~~~p~f~l-~--~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
+|..+|+|.+ + .+|+ .+++++++||+++|+||++ |||+|..++|.+.+++++|+++ ++.+++|+.+
T Consensus 2 ~G~~~P~~~~~~~~~~g~-~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~---------~v~~v~v~~~ 71 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGK-PVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK---------GVDVVGVSSD 71 (146)
T ss_dssp TTSB--CCEEEEEETTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TCEEEEEEES
T ss_pred CCCCCCCeEEEeecCCCC-EecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC---------ceEEEEeccc
Confidence 5889999998 5 9999 9999999999999999999 9999999999999999999876 8999999999
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC---------ccceEEEECCCCcEEecccc
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~ 303 (399)
.+.. ..+++++.+ +++|+..|.+..+.+.|++. ++|+++|||++|+|++++.+
T Consensus 72 ~~~~-~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 72 DDPP-VREFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp SSHH-HHHHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred CCHH-HHHHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence 7766 888888755 78999999999999999998 99999999999999998543
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=156.24 Aligned_cols=129 Identities=44% Similarity=0.760 Sum_probs=118.0
Q ss_pred ccCCeEEecCCCCEEecc-ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc-
Q 015833 11 LRRRMTSTKEIGEEVKVS-DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC- 88 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~- 88 (399)
......|.+.+|..+..+ .++||+|.++|.|.|||+|+.+.|.|.++|+++++++.+++||+||.|++.+++.+|+..
T Consensus 11 ~~~g~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 11 LLRGNRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred HHcCCeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc
Confidence 344578889999888877 689999999999999999999999999999999999899999999999999999999996
Q ss_pred -CCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCC
Q 015833 89 -MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 143 (399)
Q Consensus 89 -~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~ 143 (399)
+.|+.+||.|... +++.+.|.|.++|+++++++ +|+++..++..++...|.
T Consensus 91 ~~~W~~iPf~d~~~-~~l~~ky~v~~iP~l~i~~~---dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 91 HGDWLAIPFGDDLI-QKLSEKYEVKGIPALVILKP---DGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCeEEecCCCHHH-HHHHHhcccCcCceeEEecC---CCCEehHhhHHHHHhhcc
Confidence 5699999977654 99999999999999999999 999999999999888774
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-20 Score=151.98 Aligned_cols=116 Identities=28% Similarity=0.548 Sum_probs=107.2
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|.++|+|++ +.+|+ .+++++++||+++|.||++ ||++|...++.|++++++|+.+ ++.+++|+.| +
T Consensus 1 vG~~~P~f~l~~~~g~-~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~---------~~~vi~is~d-~ 69 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGK-TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK---------GVQVIGISTD-D 69 (124)
T ss_dssp TTSBGGCEEEETTTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS-S
T ss_pred CcCCCCCcEeECCCCC-EEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc---------eEEeeecccc-c
Confidence 5889999999 99999 9999999999999999999 9999999999999999999866 8999999997 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEec
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~ 300 (399)
.++.+++.+..+ +.+|+..|....+++.|++. .+|+++|||++|+|+++
T Consensus 70 ~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccchhhhhhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 567888888776 88999999999999999998 99999999999999874
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=160.46 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=99.6
Q ss_pred HhhhcCCCCccc-CCCC--Cceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 171 NLLTNHDRGYLL-GHPP--DEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g--~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
...|.++|+|++ +.+| + .++++++ +||+++|+||++||++|+.++|.|.++++ + +++|++|+
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~-~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~---------~~~vi~v~ 104 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q---------GIRVVGMN 104 (185)
T ss_pred hhcCCCCCCcCCccCCCCCc-cccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c---------CCEEEEEE
Confidence 356889999999 7774 6 6776665 79999999999999999999999987743 3 68999999
Q ss_pred cCCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 247 TDRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.|.+.++.++++++++ +.+| +..|....+.+.|++.++|++|+||++|+|+++..+
T Consensus 105 ~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 105 YKDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred CCCCHHHHHHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 9888888999998876 4566 356777889999999999999999999999988654
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=156.26 Aligned_cols=148 Identities=12% Similarity=0.165 Sum_probs=121.3
Q ss_pred hcCCCCccc-CCCCCceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 015833 174 TNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 249 (399)
Q Consensus 174 g~~~p~f~l-~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 249 (399)
|..+|+|.+ +.+|+ .++++++ +|+++||+||++||+.|..+++.|.+++++|+++ ++++++|++|.
T Consensus 1 g~~~p~f~l~~~~g~-~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~---------~v~~v~is~d~~~ 70 (171)
T cd02969 1 GSPAPDFSLPDTDGK-TYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK---------GVAVVAINSNDIE 70 (171)
T ss_pred CCcCCCccccCCCCC-EEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC---------CeEEEEEecCccc
Confidence 467899999 99999 9999998 8899999999999999999999999999999865 79999999985
Q ss_pred -----CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHH
Q 015833 250 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 324 (399)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 324 (399)
+.+++++++++++ +.+|+..|....+++.|++..+|+++|||++|+|++...... ..+. ........++
T Consensus 71 ~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~--~~~~---~~~~~~~~~~ 144 (171)
T cd02969 71 AYPEDSPENMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDD--SRPG---NDPPVTGRDL 144 (171)
T ss_pred cccccCHHHHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccC--Cccc---ccccccHHHH
Confidence 5788999999877 568999998999999999999999999999999998753221 1110 0123345677
Q ss_pred HHHHHHHhccCCC
Q 015833 325 EKQMEEEAKNLPR 337 (399)
Q Consensus 325 ~~~~~~~~~~~~~ 337 (399)
..+|+.++.+.+.
T Consensus 145 ~~~i~~~l~~~~~ 157 (171)
T cd02969 145 RAALDALLAGKPV 157 (171)
T ss_pred HHHHHHHHcCCCC
Confidence 7777777665544
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=142.10 Aligned_cols=93 Identities=45% Similarity=0.924 Sum_probs=84.4
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC--CCcccccCCchhH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM--PWLALPFGDPTIK 274 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~--~~~~~p~~~d~~~ 274 (399)
||+++|+||++||++|+.++|.|.++++++++. .++++|+|++|.+.++++++++++ +|..+++..+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~--------~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKK--------DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--------CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH
Confidence 799999999999999999999999999999821 379999999999999999999988 8999999999899
Q ss_pred HHHHhCCCCccceEEEECCCCcE
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i 297 (399)
.+.+.|++.++|+++|+|++|+|
T Consensus 73 ~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETTSBE
T ss_pred HHHHHCCCCcCCEEEEECCCCCC
Confidence 99999999999999999999986
|
... |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=146.77 Aligned_cols=110 Identities=22% Similarity=0.376 Sum_probs=96.2
Q ss_pred CCccc-CCCCCceeeccccC-CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 015833 178 RGYLL-GHPPDEKVPVSSLV-GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~-gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 255 (399)
|+|.+ +.+|+ .+++++++ ||+++|+||++||++|+.++|.++++++++.+ ++.++.|+ |.+.++++
T Consensus 1 p~f~l~~~~G~-~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~----------~~~vi~v~-~~~~~~~~ 68 (114)
T cd02967 1 PTFDLTTIDGA-PVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD----------WLDVVLAS-DGEKAEHQ 68 (114)
T ss_pred CCceeecCCCC-EEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC----------CcEEEEEe-CCCHHHHH
Confidence 68899 99999 99999997 99999999999999999999999999888743 47888776 66788899
Q ss_pred HHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 256 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 256 ~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++++++...+|+..+ ..+.+.|++.++|++++||++|++++++
T Consensus 69 ~~~~~~~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 69 RFLKKHGLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHhCCCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 9999888656777653 5688999999999999999999999874
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=150.02 Aligned_cols=121 Identities=47% Similarity=0.881 Sum_probs=111.6
Q ss_pred CCCCCceeecc-ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhc-
Q 015833 183 GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT- 260 (399)
Q Consensus 183 ~~~g~~~~~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~- 260 (399)
..+|. .+..+ .++||+|+++|.|.||++|+.+.|.|.++|+++++. ...++||+||.|++.+++..|+..
T Consensus 19 ~~~~~-~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-------~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 19 KQDGT-EVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-------AAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred ccCCc-cchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-------CCceEEEEEecCCCHHHHHHHHHhc
Confidence 67777 66666 689999999999999999999999999999999876 557999999999999999999985
Q ss_pred -CCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcc
Q 015833 261 -MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQE 311 (399)
Q Consensus 261 -~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~ 311 (399)
+.|+.+|+..+..+++.+.|+|.++|++++++++|+++..+|+.++...|.
T Consensus 91 ~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 91 HGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 679999999999999999999999999999999999999999999988874
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=156.33 Aligned_cols=120 Identities=25% Similarity=0.477 Sum_probs=110.4
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
..|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+...+.|.++++++.+. ++++++|++|.+
T Consensus 36 ~~g~~~p~~~~~~~~g~-~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vi~i~~d~~ 105 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGK-KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK---------GVEIIAVNVDET 105 (173)
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEEcCCC
Confidence 36788999999 99999 99999999999999999999999999999999999999865 799999999999
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+++++++++++ +.+|+..|....+.+.|++.++|+++++|++|+++....
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~ 156 (173)
T PRK03147 106 ELAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVIT 156 (173)
T ss_pred HHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEe
Confidence 899999998877 678888888899999999999999999999999997643
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=163.65 Aligned_cols=122 Identities=14% Similarity=0.184 Sum_probs=99.1
Q ss_pred HhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 015833 171 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 248 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 248 (399)
...|..+|+|++ +.+|+ .+++++++||+|||+||++||++|..++|.|++++++|+++ +++||+|++|
T Consensus 73 ~~~g~~aPdF~l~d~~G~-~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~---------Gv~VIgV~~d~ 142 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGK-DVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ---------GFEILAFPCNQ 142 (236)
T ss_pred hhcCCCCCceEEECCCCC-EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC---------CcEEEEEeccc
Confidence 356888999999 99999 99999999999999999999999999999999999999866 8999999975
Q ss_pred ------CCHHHHHHHHh-cCCCcccccCC--chhH-HHHHhC-------C------CCccceEEEECCCCcEEecccc
Q 015833 249 ------RDQTSFESYFG-TMPWLALPFGD--PTIK-ELTKYF-------D------VQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 249 ------~~~~~~~~~~~-~~~~~~~p~~~--d~~~-~~~~~~-------~------v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.+.++.++++. +++ +.||+.. |.+. .++..| + +...|++||||++|+|+.+..+
T Consensus 143 ~~~~e~~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G 219 (236)
T PLN02399 143 FGGQEPGSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP 219 (236)
T ss_pred ccccCCCCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC
Confidence 34567888874 444 7788864 3222 232222 2 3567999999999999998654
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-19 Score=149.09 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=99.3
Q ss_pred CCCCccc-CCCC--CceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 015833 176 HDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 252 (399)
Q Consensus 176 ~~p~f~l-~~~g--~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 252 (399)
.+|+|++ +.+| . .+++++++||+++|+||++||++|+.++|.|+++.+++ +++|++|+.+.+.+
T Consensus 2 ~~p~f~~~~~~g~~~-~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------------~~~vv~v~~~~~~~ 68 (127)
T cd03010 2 PAPAFSLPALPGPDK-TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------------RVPIYGINYKDNPE 68 (127)
T ss_pred CCCCcccccccCCCc-cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------------CcEEEEEECCCCHH
Confidence 5799999 8888 7 89999999999999999999999999999999886553 48899999988889
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 253 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 253 ~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
++++++++......++..|....+++.|++.++|+++++|++|+++.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 69 NALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred HHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEec
Confidence 999999887643234556778899999999999999999999999988543
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=144.07 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=95.2
Q ss_pred CCeEEecCCCCEEeccccC-CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCC
Q 015833 13 RRMTSTKEIGEEVKVSDLE-GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW 91 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~~-gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~ 91 (399)
|+|.+++.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++++ ++.++.|+ |.+.+...++.+++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 7999999999999999997 99999999999999999999999999888754 27788775 6778889999998875
Q ss_pred cccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccc
Q 015833 92 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 92 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
..+|... ...+.+.|++..+|++++||+ +|++++++.
T Consensus 77 ~~~p~~~---~~~~~~~~~~~~~P~~~vid~---~G~v~~~~~ 113 (114)
T cd02967 77 EAFPYVL---SAELGMAYQVSKLPYAVLLDE---AGVIAAKGL 113 (114)
T ss_pred CCCcEEe---cHHHHhhcCCCCcCeEEEECC---CCeEEeccc
Confidence 4344321 156889999999999999999 999998753
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-19 Score=159.56 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=97.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 248 (399)
..+..+|+|++ +.+|+ .+++++++||+|||+|||+||++|..++|.|++++++|+++ +++||+|++|
T Consensus 14 ~~~~~~pdf~l~d~~G~-~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~---------g~~vvgv~~~~~ 83 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGT-TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL---------GLEILAFPTSQF 83 (199)
T ss_pred hcCCCCCceEEECCCCC-EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC---------ceEEEEecchhc
Confidence 35678999999 99999 99999999999999999999999999999999999999866 8999999974
Q ss_pred -----CCHHHHHHHHhcCCCcccccCCc------hhHH--------HHHhCCCCc----c---ceEEEECCCCcEEeccc
Q 015833 249 -----RDQTSFESYFGTMPWLALPFGDP------TIKE--------LTKYFDVQG----I---PCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 -----~~~~~~~~~~~~~~~~~~p~~~d------~~~~--------~~~~~~v~~----~---P~~~lid~~G~i~~~~~ 302 (399)
.+.+++++++++.+ ++||+..| .... +...|++.+ + |++||||++|+|+.+.+
T Consensus 84 ~~~e~d~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 84 LNQEFPNTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred cCCCCCCHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 35678999998776 67887543 1111 223344422 2 37999999999998865
Q ss_pred c
Q 015833 303 R 303 (399)
Q Consensus 303 ~ 303 (399)
+
T Consensus 163 g 163 (199)
T PTZ00056 163 P 163 (199)
T ss_pred C
Confidence 4
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-19 Score=154.61 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=100.7
Q ss_pred hhcCCCCccc-CCCC----CceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 173 LTNHDRGYLL-GHPP----DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g----~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
+|..+|+|.+ +.+| + .+++++++||+++|+|| ++||++|..+++.|++++++|.+. ++.|++||
T Consensus 1 vG~~aP~f~~~~~~g~~~~~-~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~---------~v~vv~Is 70 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFK-EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL---------NAEVLGVS 70 (173)
T ss_pred CCCcCCCCEeecccCCCCce-EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEe
Confidence 4788999999 7766 7 89999999999999999 799999999999999999999866 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 247 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
+|.. +..+++.+.. .-++||+..|....+++.|++. .+|++||||++|+|++.+.
T Consensus 71 ~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~ 137 (173)
T cd03015 71 TDSH-FSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV 137 (173)
T ss_pred cCCH-HHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe
Confidence 9853 3333343321 2367899999999999999986 6889999999999998853
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=149.30 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=96.2
Q ss_pred CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-----CCHHHHHHHHhc
Q 015833 186 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSFESYFGT 260 (399)
Q Consensus 186 g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-----~~~~~~~~~~~~ 260 (399)
|+ .+++++++||+++|+||++||++|..++|.|++++++|+++ ++.+++|+.+ .+.+++++++++
T Consensus 13 ~~-~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~---------~~~vi~i~~~~~~~~~~~~~~~~~~~~ 82 (126)
T cd03012 13 DK-PLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD---------GLVVIGVHSPEFAFERDLANVKSAVLR 82 (126)
T ss_pred CC-ccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC---------CeEEEEeccCccccccCHHHHHHHHHH
Confidence 46 89999999999999999999999999999999999999865 7999999863 467888999988
Q ss_pred CCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 261 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 261 ~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++ +.+|+..|....+.+.|++.++|+++|||++|+++++..
T Consensus 83 ~~-~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 83 YG-ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred cC-CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 87 689999999999999999999999999999999998854
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=155.84 Aligned_cols=118 Identities=15% Similarity=0.225 Sum_probs=95.9
Q ss_pred cCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC----
Q 015833 175 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---- 249 (399)
Q Consensus 175 ~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---- 249 (399)
..+|+|++ +.+|+ .+++++++||++||+||++||++|..++|.|++++++|+++ ++.|++|++|.
T Consensus 7 ~~~pdf~l~d~~G~-~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~---------g~~vvgv~~~~~~~~ 76 (167)
T PLN02412 7 KSIYDFTVKDIGGN-DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ---------GFEILAFPCNQFLGQ 76 (167)
T ss_pred CCCCceEEECCCCC-EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC---------CcEEEEecccccccC
Confidence 56899999 99999 99999999999999999999999999999999999999976 89999999862
Q ss_pred ---CHHHHHHHH-hcCCCcccccCCc--hh-HHHHHhCC-------------CCccceEEEECCCCcEEecccc
Q 015833 250 ---DQTSFESYF-GTMPWLALPFGDP--TI-KELTKYFD-------------VQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ---~~~~~~~~~-~~~~~~~~p~~~d--~~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+.++..+++ ++++ ++||+..+ .+ ...+..|+ +.+.|++||||++|+++.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g 149 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP 149 (167)
T ss_pred CCCCHHHHHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC
Confidence 445665654 5544 78888653 22 23333332 6678999999999999998654
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=177.87 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=105.2
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 248 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 248 (399)
.+..+|+|++ +.+|+ .+.++ +||+|||+|||+||++|+.++|.|++++++++.. +++||+|+++
T Consensus 34 ~~~~lP~f~l~D~dG~-~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~ 101 (521)
T PRK14018 34 VPHTLSTLKTADNRPA-SVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS---------SANLITVASPGFL 101 (521)
T ss_pred ccCCCCCeEeecCCCc-eeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEeccccc
Confidence 4567899999 99999 88887 8999999999999999999999999999998744 7899999873
Q ss_pred --CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 249 --RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 249 --~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.+.++++++++.+++.++|+..|....+++.|+|.++|+++|||++|+++.+..+
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G 158 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKG 158 (521)
T ss_pred ccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeC
Confidence 3456788888888877889999999999999999999999999999999988543
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-19 Score=151.24 Aligned_cols=120 Identities=25% Similarity=0.368 Sum_probs=100.6
Q ss_pred ccccccCCeEEec--CCCCEEeccccCCCEEEEEEecC-CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 7 YVQQLRRRMTSTK--EIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d--~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
++|+.+|+|++++ .+|+++++++++||+++|+||++ |||+|+.++|.|.++++.+++.+ +.+++|+.+.+.. ..
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~ 77 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VR 77 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HH
Confidence 3688999999966 99999999999999999999999 99999999999999999999886 9999999988877 78
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCC---------CcCeEEEEcCCCCCCCeeeccc
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
++.++.+....-..|. ...+.+.|++. ++|++++||+ +|+|++...
T Consensus 78 ~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~P~~~lId~---~G~V~~~~~ 132 (146)
T PF08534_consen 78 EFLKKYGINFPVLSDP--DGALAKALGVTIMEDPGNGFGIPTTFLIDK---DGKVVYRHV 132 (146)
T ss_dssp HHHHHTTTTSEEEEET--TSHHHHHTTCEEECCTTTTSSSSEEEEEET---TSBEEEEEE
T ss_pred HHHHhhCCCceEEech--HHHHHHHhCCccccccccCCeecEEEEEEC---CCEEEEEEe
Confidence 8888754221112232 37899999988 9999999999 999997753
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-19 Score=152.81 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=103.1
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCC-ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|..++|.|+++++++. +++|++||.| +
T Consensus 20 ~G~~~P~f~l~~~~g~-~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----------~~~vv~vs~D-~ 86 (167)
T PRK00522 20 VGDKAPDFTLVANDLS-DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----------NTVVLCISAD-L 86 (167)
T ss_pred CCCCCCCeEEEcCCCc-EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----------CcEEEEEeCC-C
Confidence 6889999999 99999 99999999999999999999 9999999999999988873 5899999998 4
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhCCCCccc---------eEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~ 302 (399)
....+++.++.+...+++..| ....+++.||+...| +++|||++|+|++.+.
T Consensus 87 ~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 87 PFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 466788888877444788888 566999999998877 9999999999998864
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=153.89 Aligned_cols=159 Identities=14% Similarity=0.218 Sum_probs=118.8
Q ss_pred hhhcCCCCccc----CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|..+|+|+. +.+.. .+++++++||+++|+|| +.||+.|..+++.|.+++++|.+. +++|++||
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~-~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~---------g~~vigIS 72 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL---------GVDVYSVS 72 (187)
T ss_pred ccCCcCCCcEEEEEeCCcce-EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC---------CCEEEEEe
Confidence 47899999987 23444 67888999999999999 999999999999999999999876 89999999
Q ss_pred cCCCHHHHHHHHhc---CCCcccccCCchhHHHHHhCCC----Ccc--ceEEEECCCCcEEecccchhhhhhcccCCCCC
Q 015833 247 TDRDQTSFESYFGT---MPWLALPFGDPTIKELTKYFDV----QGI--PCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 317 (399)
Q Consensus 247 ~d~~~~~~~~~~~~---~~~~~~p~~~d~~~~~~~~~~v----~~~--P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 317 (399)
+|. ....+++.+. ...+.||+..|.+..+++.||+ .++ |++||||++|+|++...... ..|
T Consensus 73 ~D~-~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~--~~~------- 142 (187)
T PRK10382 73 TDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE--GIG------- 142 (187)
T ss_pred CCC-HHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCC--CCC-------
Confidence 984 4455555543 2347899999999999999998 356 99999999999998864332 111
Q ss_pred hHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCC
Q 015833 318 EAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 358 (399)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
+..+++.+.++.+ .....|....+|..|..|..
T Consensus 143 -~~~~eil~~l~al-------q~~~~~~g~~~p~~w~~~~~ 175 (187)
T PRK10382 143 -RDASDLLRKIKAA-------QYVASHPGEVCPAKWKEGEA 175 (187)
T ss_pred -CCHHHHHHHHHhh-------hhHhhcCCeEeCCCCCcCCc
Confidence 2345554444321 11223335678888876654
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-19 Score=152.83 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=95.6
Q ss_pred CCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC------
Q 015833 177 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------ 249 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~------ 249 (399)
.|+|++ +.+|+ .+++++++||+|+|+|||+||+ |..++|.|++++++|+++ ++.|++|++|.
T Consensus 2 ~~~f~l~d~~G~-~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~ 70 (152)
T cd00340 2 IYDFSVKDIDGE-PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR---------GLVVLGFPCNQFGGQEP 70 (152)
T ss_pred cceeEEECCCCC-EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC---------CEEEEEeccCccccCCC
Confidence 588999 99999 9999999999999999999999 999999999999999765 79999999752
Q ss_pred -CHHHHHHHHhc-CCCcccccCCch--hHH-HHHhCC--CCccc-----------eEEEECCCCcEEecccc
Q 015833 250 -DQTSFESYFGT-MPWLALPFGDPT--IKE-LTKYFD--VQGIP-----------CLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 -~~~~~~~~~~~-~~~~~~p~~~d~--~~~-~~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~ 303 (399)
+.++.++++++ .+ ++||+..|. ... ..+.|+ +.++| ++||||++|+++.+..+
T Consensus 71 ~~~~~~~~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 71 GSNEEIKEFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred CCHHHHHHHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 35778999986 55 688887652 222 455555 46666 79999999999998654
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.8e-19 Score=148.45 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=103.2
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCC-ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|+.++|.|.+++++++ ++.|++|++|.
T Consensus 2 ~G~~aP~f~l~~~~g~-~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----------~~~vi~Is~d~- 68 (143)
T cd03014 2 VGDKAPDFTLVTSDLS-EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----------NTVVLTISADL- 68 (143)
T ss_pred CCCCCCCcEEECCCCc-EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----------CCEEEEEECCC-
Confidence 5788999999 99999 99999999999999999998 6999999999999998873 58999999985
Q ss_pred HHHHHHHHhcCCCcccccCCchh-HHHHHhCCCCc------cceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQG------IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~-~~~~~~~~v~~------~P~~~lid~~G~i~~~~~ 302 (399)
.+..+++.++++...+|+..|.. ..+++.||+.. .|++||||++|+|+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 69 PFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred HHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 56678888877766788888875 89999999863 799999999999998864
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=149.38 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=105.6
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||++||+||++ ||+.|..+++.|.+++++++++ ++++|+|+.| +
T Consensus 6 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~---------~v~vi~Is~d-~ 74 (154)
T PRK09437 6 AGDIAPKFSLPDQDGE-QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA---------GVVVLGISTD-K 74 (154)
T ss_pred CCCcCCCcEeeCCCCC-EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-C
Confidence 5888999999 99999 9999999999999999986 7889999999999999999866 7999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCCcc------------ceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI------------PCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~------------P~~~lid~~G~i~~~~~ 302 (399)
.+++++++++++ +++|+..|....+++.||+... |+++|||++|+|+....
T Consensus 75 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 75 PEKLSRFAEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred HHHHHHHHHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 688889998876 6888888888999999998654 67899999999998853
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=151.76 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=103.7
Q ss_pred hhhcCCCCccc-CCCCCceeecc--ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|..+|+|++ +.+|+ .++++ +++||+++|+||++||++|+.++|.+.++++++ ++.+++|+.|
T Consensus 47 ~vG~~aP~f~l~d~~G~-~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------------~~~vv~Is~~ 113 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGE-PVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------------ETDVVMISDG 113 (189)
T ss_pred CCCCcCCCcEecCCCCC-EEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------------CCcEEEEeCC
Confidence 47889999999 99999 99994 579999999999999999999999999887543 4678999855
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHH
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 328 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~ 328 (399)
+.++.++++++++ +.++... ...++.+.|++..+|++++||++|+++++... .+.+.++++.+++
T Consensus 114 -~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~------------~~~~~le~ll~~l 178 (189)
T TIGR02661 114 -TPAEHRRFLKDHE-LGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGLT------------NTREHLESLLEAD 178 (189)
T ss_pred -CHHHHHHHHHhcC-CCcceee-chhHHHHhccCCccceEEEECCCCeEEEccCC------------CCHHHHHHHHHHH
Confidence 6778889998876 3333222 35789999999999999999999999987321 2455666666555
Q ss_pred H
Q 015833 329 E 329 (399)
Q Consensus 329 ~ 329 (399)
+
T Consensus 179 ~ 179 (189)
T TIGR02661 179 R 179 (189)
T ss_pred H
Confidence 3
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=153.80 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=117.3
Q ss_pred hhhcCCCCccc-C-CCCCc-eeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 172 LLTNHDRGYLL-G-HPPDE-KVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 172 ~~g~~~p~f~l-~-~~g~~-~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+|..+|+|++ + .+|+. .+++++++||+++|+|| ++||++|..+++.|.+++++|.+. +++|++||+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~---------gv~vi~VS~ 73 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL---------GVEVYSVST 73 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc---------CCcEEEEeC
Confidence 57899999999 6 46641 47788999999999999 999999999999999999999866 899999999
Q ss_pred CCCHHHHHHHHh---cCCCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccCCCCCh
Q 015833 248 DRDQTSFESYFG---TMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 318 (399)
Q Consensus 248 d~~~~~~~~~~~---~~~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 318 (399)
|.. ...+++.+ ....+.||+..|.+..+++.||+. ..|++||||++|+|+....... + ..
T Consensus 74 D~~-~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~---------~-~~ 142 (187)
T TIGR03137 74 DTH-FVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDN---------G-IG 142 (187)
T ss_pred CCH-HHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCC---------C-CC
Confidence 953 33333333 223467889999999999999986 4699999999999998753211 1 11
Q ss_pred HHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCC
Q 015833 319 AKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 358 (399)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
+..+++.+.|+.+ .....+....+|..|..|..
T Consensus 143 ~~~~~ll~~l~~~-------~~~~~~~~~~~~~~~~~~~~ 175 (187)
T TIGR03137 143 RDASELLRKIKAA-------QYVAAHPGEVCPAKWKEGAE 175 (187)
T ss_pred CCHHHHHHHHHHh-------hhHHhcCCeeeCCCCCcCCc
Confidence 2456666655431 11122224567777766654
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-18 Score=150.90 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=98.8
Q ss_pred HhhhcCCCCccc-CCCCC-ceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 171 NLLTNHDRGYLL-GHPPD-EKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~-~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
..+|.++|+|++ +.+|+ ..++++++ +||+++|+||++||++|+.++|.++++++ + ++++++|+.
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~---------~~~vi~V~~ 100 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----D---------GLPIVGVDY 100 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----c---------CCEEEEEEC
Confidence 357899999999 88876 14554565 68999999999999999999999887653 2 589999999
Q ss_pred CCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 248 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+.+.++.++++++++ +.+| +..|....+.+.|++.++|++++||++|+++++..+
T Consensus 101 ~~~~~~~~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G 156 (173)
T TIGR00385 101 KDQSQNALKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAG 156 (173)
T ss_pred CCChHHHHHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEec
Confidence 877778888888876 4565 456778899999999999999999999999988544
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=143.61 Aligned_cols=116 Identities=25% Similarity=0.455 Sum_probs=99.6
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecC-CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 86 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~ 86 (399)
+|..+|+|++++.+|+.++|++++||+++|.||++ ||++|+..++.|+++++++++.+ +.+++|+.|.. ++.+++.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~-~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDP-EEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSH-HHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccc-cchhhhh
Confidence 58899999999999999999999999999999999 99999999999999999999876 99999999655 4677777
Q ss_pred hcCCCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeee
Q 015833 87 ACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 87 ~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~ 131 (399)
+..++....+.|.. ..+.+.|++. .+|+.+|||+ +|+|++
T Consensus 78 ~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~---~g~I~~ 123 (124)
T PF00578_consen 78 EEYGLPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDP---DGKIRY 123 (124)
T ss_dssp HHHTCSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEET---TSBEEE
T ss_pred hhhccccccccCcc--hHHHHHcCCccccCCceEeEEEEECC---CCEEEe
Confidence 75543222222432 7899999998 9999999999 999986
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=134.16 Aligned_cols=93 Identities=39% Similarity=0.755 Sum_probs=82.4
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC--CCcccccCChHHHHHHHhhc
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM--PWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~ 109 (399)
||+++|+||++||++|+.++|.|.++++++++ +.++++|+|+.|++.+.++++.++. +|..+++.+.. ...+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHC
Confidence 79999999999999999999999999999995 4469999999999999999999988 79999985544 58999999
Q ss_pred CCCCcCeEEEEcCCCCCCCe
Q 015833 110 DIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i 129 (399)
+|.++|+++|+|+ +|+|
T Consensus 79 ~i~~iP~~~lld~---~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDP---DGKI 95 (95)
T ss_dssp T-TSSSEEEEEET---TSBE
T ss_pred CCCcCCEEEEECC---CCCC
Confidence 9999999999999 9976
|
... |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-18 Score=146.06 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=104.6
Q ss_pred hhcCCCCccc-CCCCCceeeccccCC-cEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|..+|+|.+ +.+|+ .+++++++| |+++|.|| ++||+.|...+|.|++++++++++ ++.+++|+.|
T Consensus 3 ~G~~~p~~~l~~~~g~-~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~v~vi~vs~d- 71 (149)
T cd03018 3 VGDKAPDFELPDQNGQ-EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA---------GAEVLGISVD- 71 (149)
T ss_pred CCCcCCCcEecCCCCC-EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC---------CCEEEEecCC-
Confidence 5788999999 99999 999999999 99999888 899999999999999999999865 7999999998
Q ss_pred CHHHHHHHHhcCCCcccccCCchh--HHHHHhCCCCc----c--ceEEEECCCCcEEecccc
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTI--KELTKYFDVQG----I--PCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~--~~~~~~~~v~~----~--P~~~lid~~G~i~~~~~~ 303 (399)
+.+..+++.++++ +.+|+..|.. ..+++.|++.. + |+++|||++|++++++.+
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 72 SPFSLRAWAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred CHHHHHHHHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEec
Confidence 4567888888876 6889988876 89999999873 3 389999999999988543
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=144.67 Aligned_cols=116 Identities=26% Similarity=0.332 Sum_probs=105.0
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 253 (399)
.+|+|.+ +.+|+ .+++++++||+++|+|| +.||+.|..+++.|.++++++.++ +++|++|++| +.++
T Consensus 2 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d-~~~~ 70 (140)
T cd03017 2 KAPDFTLPDQDGE-TVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL---------GAVVIGVSPD-SVES 70 (140)
T ss_pred CCCCccccCCCCC-EEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CHHH
Confidence 5799999 99999 99999999999999999 579999999999999999999865 7999999998 5678
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhCCCCcc---------ceEEEECCCCcEEecccc
Q 015833 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 254 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~~~ 303 (399)
++++.++++ +.+|+..|.+..+++.||+... |+++|||++|+|+....+
T Consensus 71 ~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g 128 (140)
T cd03017 71 HAKFAEKYG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRK 128 (140)
T ss_pred HHHHHHHhC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEec
Confidence 889998877 6789999988999999999988 999999999999988543
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-18 Score=142.64 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=107.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|.++|||++ +.+|+ .++|++++||+|+|+||. .++|.|..++-.++..+.+|.+. +.+|++||.|
T Consensus 5 ~~G~~aPdF~Lp~~~g~-~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~---------~a~V~GIS~D- 73 (157)
T COG1225 5 KVGDKAPDFELPDQDGE-TVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL---------GAVVLGISPD- 73 (157)
T ss_pred CCCCcCCCeEeecCCCC-EEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC---------CCEEEEEeCC-
Confidence 36899999999 99999 999999999999999995 59999999999999999999876 8999999999
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC------------ccceEEEECCCCcEEecc
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~ 301 (399)
+....++|.++++ ++||+++|.+.++++.||+- ..+++||||++|+|+...
T Consensus 74 s~~~~~~F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 74 SPKSHKKFAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CHHHHHHHHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 6678888988888 78999999999999999983 457899999999999875
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=143.69 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=96.6
Q ss_pred ccCCeEEecCCC--CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 11 LRRRMTSTKEIG--EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 11 ~~p~f~l~d~~G--~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
.+|+|++++.+| +.+++++++||+++|+||++||++|+.++|.|+++.+.+ ++++++|+.+.+.+.++++.++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHh
Confidence 589999999999 889999999999999999999999999999999987764 2999999999899999999987
Q ss_pred CCCccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 89 MPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 89 ~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+....+. .|. ...+++.|++.++|+++++|+ +|+++...
T Consensus 77 ~~~~~~~~~~D~--~~~~~~~~~v~~~P~~~~ld~---~G~v~~~~ 117 (127)
T cd03010 77 HGNPYAAVGFDP--DGRVGIDLGVYGVPETFLIDG---DGIIRYKH 117 (127)
T ss_pred cCCCCceEEECC--cchHHHhcCCCCCCeEEEECC---CceEEEEE
Confidence 66422211 133 378999999999999999999 99988663
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-18 Score=150.99 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=94.2
Q ss_pred hcCCCCccc-CCCCCceeeccccCCcEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 015833 174 TNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 249 (399)
Q Consensus 174 g~~~p~f~l-~~~g~~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 249 (399)
+...|+|++ +.+|+ .+++++++||+| ++.|||+||++|+.++|.|++++++|+++ ++.|++|++|.
T Consensus 17 ~~~~p~f~l~d~~G~-~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~---------gv~vv~vs~~~~~ 86 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQ-LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ---------GLEILAFPCNQFM 86 (183)
T ss_pred CCcccceEeEcCCCC-EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC---------CcEEEEEeccccc
Confidence 456899999 99999 999999999964 56679999999999999999999999876 89999999752
Q ss_pred -----CHHHHHHHHh-cCCCcccccCCc--hh----HHHH------------HhCCCCccce---EEEECCCCcEEeccc
Q 015833 250 -----DQTSFESYFG-TMPWLALPFGDP--TI----KELT------------KYFDVQGIPC---LVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 -----~~~~~~~~~~-~~~~~~~p~~~d--~~----~~~~------------~~~~v~~~P~---~~lid~~G~i~~~~~ 302 (399)
+.+++++++. +++ ++||+..| .+ ..+. ..+++.++|+ +||||++|+|+.+..
T Consensus 87 ~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 87 EQEPWDEPEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred ccCCCCHHHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 3467888876 444 67888754 22 1222 1246789995 699999999999864
Q ss_pred c
Q 015833 303 R 303 (399)
Q Consensus 303 ~ 303 (399)
+
T Consensus 166 g 166 (183)
T PTZ00256 166 P 166 (183)
T ss_pred C
Confidence 3
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=166.76 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=58.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.|+.|+|+|||+||++|+.+.|.++++++.+++. ..+.++.|+++.+ ..
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~--------~~v~~~~id~~~~-----------------------~~ 422 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN--------DSIIVAKMNGTAN-----------------------ET 422 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CcEEEEEEECCCC-----------------------cc
Confidence 4789999999999999999999999999888643 2466666665543 45
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
.++.|+++++||++++++++++.
T Consensus 423 ~~~~~~v~~~Pt~~~~~~~~~~~ 445 (477)
T PTZ00102 423 PLEEFSWSAFPTILFVKAGERTP 445 (477)
T ss_pred chhcCCCcccCeEEEEECCCcce
Confidence 67889999999999998777653
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-18 Score=147.26 Aligned_cols=117 Identities=13% Similarity=0.144 Sum_probs=89.9
Q ss_pred cCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHHHHH
Q 015833 12 RRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAFNN 84 (399)
Q Consensus 12 ~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~~~~~ 84 (399)
+|+|+++|.+|++++|++++||+|+|+|||+||+ |+.++|.|+++++++++.| +++++|+.|. +.+.+.+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHH
Confidence 6999999999999999999999999999999999 9999999999999998776 9999999753 3567888
Q ss_pred hHhc-CCCcccccCChHHHH-HHHhhcC--CCCcC-----------eEEEEcCCCCCCCeeeccc
Q 015833 85 YRAC-MPWLAVPYSDLETKK-ALNRKFD--IEGIP-----------CLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 85 ~~~~-~~~~~~~~~d~~~~~-~l~~~~~--v~~~P-----------~~~lid~~~~~G~i~~~~~ 134 (399)
++++ .+..+..+.|.+... ...+.|+ +..+| +.+|||+ +|+++....
T Consensus 79 f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~---~G~i~~~~~ 140 (152)
T cd00340 79 FCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDR---DGEVVKRFA 140 (152)
T ss_pred HHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECC---CCcEEEEEC
Confidence 8875 553222222211111 1233344 34455 8999999 999997643
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=147.18 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=109.3
Q ss_pred cCCCEEEEEEec---CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 30 LEGKVTALYFSA---NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 30 ~~gk~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+++...++.|++ +||++|+.+.|.+.++++.+. + +.+..+++|.+ ...+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~--~~i~~v~vd~~----------------------~~~~l~ 70 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--K--LKLEIYDFDTP----------------------EDKEEA 70 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--C--ceEEEEecCCc----------------------ccHHHH
Confidence 454455566777 999999999999999999873 2 55555555422 128899
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCeee-ccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCCC
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDATL-HDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHP 185 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~~-~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~ 185 (399)
++|+|.++||+++++ +|+.+. +. .| .+...+....+...... .+ +.-.++..
T Consensus 71 ~~~~V~~~Pt~~~f~----~g~~~~~~~-------~G---~~~~~~l~~~i~~~~~~----------~~---~~~~L~~~ 123 (215)
T TIGR02187 71 EKYGVERVPTTIILE----EGKDGGIRY-------TG---IPAGYEFAALIEDIVRV----------SQ---GEPGLSEK 123 (215)
T ss_pred HHcCCCccCEEEEEe----CCeeeEEEE-------ee---cCCHHHHHHHHHHHHHh----------cC---CCCCCCHH
Confidence 999999999999998 565542 21 01 11111111111111000 00 00011111
Q ss_pred CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 015833 186 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 265 (399)
Q Consensus 186 g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 265 (399)
. .-.+..+.+.++++.||++||++|+...+.++++..+. +++.+..|..|..
T Consensus 124 ~--~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~~--------------- 175 (215)
T TIGR02187 124 T--VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----------DKILGEMIEANEN--------------- 175 (215)
T ss_pred H--HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----------CceEEEEEeCCCC---------------
Confidence 0 01122334455677799999999999888777766553 2456666665544
Q ss_pred cccCCchhHHHHHhCCCCccceEEEECCCCc
Q 015833 266 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 266 ~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~ 296 (399)
.++++.|+|.++||+++. .+|+
T Consensus 176 --------~~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 176 --------PDLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred --------HHHHHHhCCccCCEEEEe-cCCE
Confidence 778999999999999887 5675
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-18 Score=151.49 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=99.1
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEE-EEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +..| .+++++++||+++| +||++||++|..+++.|.+++++|+++ +++|++||+|..
T Consensus 4 vG~~aP~F~~~~~~g--~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~---------~~~vi~vS~D~~ 72 (202)
T PRK13190 4 LGQKAPDFTVNTTKG--PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL---------GVELVGLSVDSI 72 (202)
T ss_pred CCCCCCCcEEecCCC--cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCH
Confidence 6889999999 6555 68999999997766 688999999999999999999999876 899999999954
Q ss_pred H--HHHHH-HHhcCC-CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 251 Q--TSFES-YFGTMP-WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~--~~~~~-~~~~~~-~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
. .+|.+ +.++.+ .+.||+..|.+..+++.||+. .+|++||||++|+|+....
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~ 134 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIY 134 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEE
Confidence 2 23433 333444 368999999999999999984 5899999999999997753
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=149.40 Aligned_cols=159 Identities=15% Similarity=0.212 Sum_probs=116.2
Q ss_pred hhhcCCCCccc-CC--CCCce---eecccc-CCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 015833 172 LLTNHDRGYLL-GH--PPDEK---VPVSSL-VGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 243 (399)
Q Consensus 172 ~~g~~~p~f~l-~~--~g~~~---~~l~~~-~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv 243 (399)
++|..+|+|++ +. +|+ . ++++++ +||+++|+||+. ||+.|..+++.|.+++++|+++ +++|+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~-~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---------g~~vi 72 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGE-IVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---------GVEVV 72 (200)
T ss_pred cCCCcCCCCEeecccCCCc-eeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEE
Confidence 47899999999 54 344 4 345554 799999999985 9999999999999999999876 89999
Q ss_pred EEecCCCH--HHHHHH-HhcCC--CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhccc
Q 015833 244 FVSTDRDQ--TSFESY-FGTMP--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQEN 312 (399)
Q Consensus 244 ~is~d~~~--~~~~~~-~~~~~--~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~ 312 (399)
+||+|... ..|.+. .+..+ -+.||+..|.+..+++.||+. ++|++||||++|+|+....+++ ..|
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~--~~g-- 148 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL--PLG-- 148 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC--CCC--
Confidence 99999532 344442 23333 268999999999999999997 7999999999999998754433 111
Q ss_pred CCCCChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCC
Q 015833 313 AYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 358 (399)
Q Consensus 313 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
+.++++.+.++.+ .....| ...+|+.|..|..
T Consensus 149 ------r~~~eilr~l~al-------~~~~~~-~~~~p~~w~~g~~ 180 (200)
T PRK15000 149 ------RNIDEMLRMVDAL-------QFHEEH-GDVCPAQWEKGKE 180 (200)
T ss_pred ------CCHHHHHHHHHHh-------hhHHhc-CCCcCCCCCCCCc
Confidence 2345555544421 112222 4678888877655
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=146.98 Aligned_cols=122 Identities=10% Similarity=0.020 Sum_probs=93.5
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~ 79 (399)
..+..+|+|+++|.+|+.+++++++||+|+|+|||+||++|+.++|.|+++++++++.| ++|++|+.| .+.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCH
Confidence 34678999999999999999999999999999999999999999999999999999877 999999974 356
Q ss_pred HHHHHhHhcCCCcccccCCh--H--HH--------HHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWLAVPYSDL--E--TK--------KALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~--~--~~--------~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+.++.++.+..+..+.+. + .. ..+...|++. ..|+.+|||+ +|+++.+.
T Consensus 92 e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~---~G~iv~~~ 161 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK---SGNVVAYF 161 (199)
T ss_pred HHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC---CCcEEEEe
Confidence 78888888765322111110 0 00 1122334332 2347999999 99999664
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=151.84 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=93.5
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~ 79 (399)
.++..+|+|+++|.+|+.+++++++||+++|+||++||++|..++|.|+++++++++.| ++|++|+.| .+.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999877 999999975 345
Q ss_pred HHHHHhH-hcCCCcccccC--ChHHHHHHHhh-------cC------CCCcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYR-ACMPWLAVPYS--DLETKKALNRK-------FD------IEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~--d~~~~~~l~~~-------~~------v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
++..+++ ++++.....+. |... ...... ++ +.+.|+.+|||+ +|+++...
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G-~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk---~GkVv~~~ 217 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNG-PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK---NGKVVERY 217 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCc-chhhHHHHHHHHhcCCccCCccccCceEEEECC---CCcEEEEE
Confidence 6777876 44442111121 2111 122222 22 456899999999 99999764
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=144.62 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=104.7
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHh
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 85 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~ 85 (399)
...|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.+.+.|.++++++++.+ +.+++|+.|.+.+.+.++
T Consensus 35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~ 112 (173)
T PRK03147 35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNF 112 (173)
T ss_pred cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999998765 999999999999999999
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++++.....+.|. ..++.+.|++.++|+++++++ +|+++..
T Consensus 113 ~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~g~i~~~ 154 (173)
T PRK03147 113 VNRYGLTFPVAIDK--GRQVIDAYGVGPLPTTFLIDK---DGKVVKV 154 (173)
T ss_pred HHHhCCCceEEECC--cchHHHHcCCCCcCeEEEECC---CCcEEEE
Confidence 99776422111132 378899999999999999999 9999855
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=143.54 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=92.2
Q ss_pred CCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-------C
Q 015833 178 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-------R 249 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-------~ 249 (399)
-+|++ +.+|+ .+++++++||++||+||++||++|..++|.|.+++++|+++ ++.|++|+++ .
T Consensus 3 ~~f~l~~~~G~-~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~---------~~~v~~i~~~~~~~~~~d 72 (153)
T TIGR02540 3 YSFEVKDARGR-TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS---------HFNVLAFPCNQFGESEPD 72 (153)
T ss_pred ccceeECCCCC-EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC---------CeEEEEEeccccccCCCC
Confidence 47888 99999 99999999999999999999999999999999999999876 8999999952 3
Q ss_pred CHHHHHHHHhc-CCCcccccCCc-----hhHHHHHhCC---CCccce----EEEECCCCcEEecccc
Q 015833 250 DQTSFESYFGT-MPWLALPFGDP-----TIKELTKYFD---VQGIPC----LVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ~~~~~~~~~~~-~~~~~~p~~~d-----~~~~~~~~~~---v~~~P~----~~lid~~G~i~~~~~~ 303 (399)
+.+..++++++ ++ +.||+..| ........|. ..++|+ +||||++|+++.+..+
T Consensus 73 ~~~~~~~f~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g 138 (153)
T TIGR02540 73 SSKEIESFARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP 138 (153)
T ss_pred CHHHHHHHHHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC
Confidence 46778888875 45 67888654 1112222232 236898 9999999999988644
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=152.53 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=118.0
Q ss_pred hhhcCCCCccc-C-CCCCc-eeecccc-CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL-G-HPPDE-KVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~-~~g~~-~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
++|..+|+|++ + .+|+. .++++++ +||+++|+|| +.||++|..+++.|.+++++|+++ +++|++||
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~---------gv~VigIS 139 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER---------GVKVLGVS 139 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 68999999998 5 34431 6899998 8888888888 899999999999999999999876 89999999
Q ss_pred cCCC--HHHHHHH-HhcC--CCcccccCCchhHHHHHhCCCC-----ccceEEEECCCCcEEecccchhhhhhcccCCCC
Q 015833 247 TDRD--QTSFESY-FGTM--PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 316 (399)
Q Consensus 247 ~d~~--~~~~~~~-~~~~--~~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 316 (399)
+|.. ..+|.+. .++. ..+.||+..|.+..+++.||+. ..|++||||++|+|++....++ ..
T Consensus 140 ~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~--~~------- 210 (261)
T PTZ00137 140 VDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL--GL------- 210 (261)
T ss_pred CCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC--CC-------
Confidence 9962 2344432 2222 3478999999999999999985 5899999999999998864332 11
Q ss_pred ChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCCC
Q 015833 317 TEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 359 (399)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (399)
.+.++++...|+.+ ..... .+..+|+.|-.|..+
T Consensus 211 -gr~v~eiLr~l~al-------q~~~~-~g~~cPanW~~g~~~ 244 (261)
T PTZ00137 211 -GRSVDETLRLFDAV-------QFAEK-TGNVCPVNWKQGDQA 244 (261)
T ss_pred -CCCHHHHHHHHHHh-------chhhh-cCCCcCCCCCcCCce
Confidence 12345555554421 01111 256788888776553
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=133.66 Aligned_cols=112 Identities=29% Similarity=0.512 Sum_probs=101.8
Q ss_pred Cccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC-HHHHHH
Q 015833 179 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-QTSFES 256 (399)
Q Consensus 179 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~-~~~~~~ 256 (399)
+|.+ +.+|+ .+++++++||+++|+||++||++|+..++.+.++.+++.+. ++.+++|++|.+ .+.+++
T Consensus 1 ~~~~~~~~g~-~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~~~v~~d~~~~~~~~~ 70 (116)
T cd02966 1 DFSLPDLDGK-PVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD---------GVEVVGVNVDDDDPAAVKA 70 (116)
T ss_pred CccccCCCCC-EeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC---------CeEEEEEECCCCCHHHHHH
Confidence 4667 88999 99999999999999999999999999999999999998643 799999999986 899999
Q ss_pred HHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 257 ~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.++ ..+++..|....+.+.|++.++|+++|+|++|+++.+.
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 71 FLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred HHHHcC-CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 999888 78888888888999999999999999999999998763
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=146.66 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=96.2
Q ss_pred cccccccCCeEEecCCCCEEecc--ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
..+|..+|+|+++|.+|+.++++ .++||+++|+||++|||+|+.++|.+++++++. + +.+++|+. .+.++..
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~-~~~~~~~ 119 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISD-GTPAEHR 119 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeC-CCHHHHH
Confidence 46788999999999999999995 579999999999999999999999999987653 2 66788884 4677888
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++.++++....++. . ..++.+.|++..+|+.+++|+ +|++++.
T Consensus 120 ~~~~~~~~~~~~~~-~--~~~i~~~y~v~~~P~~~lID~---~G~I~~~ 162 (189)
T TIGR02661 120 RFLKDHELGGERYV-V--SAEIGMAFQVGKIPYGVLLDQ---DGKIRAK 162 (189)
T ss_pred HHHHhcCCCcceee-c--hhHHHHhccCCccceEEEECC---CCeEEEc
Confidence 99998775333332 1 278889999999999999999 9999865
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-18 Score=148.97 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=95.3
Q ss_pred ccccccCCeEEecCCC--CEEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 7 YVQQLRRRMTSTKEIG--EEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G--~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
.+|..+|+|+++|.+| +.++++++ +||+++|+||++||++|+.++|.|.++++ .+ ++|++|+.|.+.+...
T Consensus 40 ~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 40 LIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAI 113 (185)
T ss_pred hcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHHH
Confidence 4577899999999984 77777776 79999999999999999999999988754 33 8999999988888888
Q ss_pred HhHhcCCCcccc-cCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccc
Q 015833 84 NYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 84 ~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
++.++++....+ ..|.. ..+.+.|++.++|++++||+ +|++++...
T Consensus 114 ~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~P~t~vid~---~G~i~~~~~ 160 (185)
T PRK15412 114 SWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYRHA 160 (185)
T ss_pred HHHHHcCCCCceEEEcCC--ccHHHhcCCCcCCeEEEECC---CceEEEEEe
Confidence 898876632211 22432 67888999999999999999 999987643
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-17 Score=158.37 Aligned_cols=244 Identities=19% Similarity=0.275 Sum_probs=150.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|.||++||++|..+.|.+.++...+++. +.+..| |+..+..+++.|+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~v------------------------d~~~~~~~~~~y~ 98 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAV------------------------DCDEHKDLCEKYG 98 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEe------------------------CchhhHHHHHhcC
Confidence 5679999999999999999999999999998763 666666 5555699999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCC--cccC-CCCC
Q 015833 111 IEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG--YLLG-HPPD 187 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~--f~l~-~~g~ 187 (399)
|.++|++.++.+ ...++.... +...+.+..... ..+...+....+. +.++ .+-.
T Consensus 99 i~gfPtl~~f~~---~~~~~~~~~------------~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~~ 155 (383)
T KOG0191|consen 99 IQGFPTLKVFRP---GKKPIDYSG------------PRNAESLAEFLI--------KELEPSVKKLVEGEVFELTKDNFD 155 (383)
T ss_pred CccCcEEEEEcC---CCceeeccC------------cccHHHHHHHHH--------HhhccccccccCCceEEccccchh
Confidence 999999999997 423332211 111111111111 0011111111111 1111 1111
Q ss_pred ceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 015833 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 267 (399)
Q Consensus 188 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 267 (399)
.+ -......+++.||+|||++|+.++|.+.++...+... ..+.+..+..+ .
T Consensus 156 -~~--~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~--------~~v~~~~~d~~--~---------------- 206 (383)
T KOG0191|consen 156 -ET--VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK--------ENVELGKIDAT--V---------------- 206 (383)
T ss_pred -hh--hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccC--------cceEEEeeccc--h----------------
Confidence 00 0012356899999999999999999999999988642 36777777665 2
Q ss_pred cCCchhHHHHHhCCCCccceEEEECCCCc-EEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhcc--CCCccccccc
Q 015833 268 FGDPTIKELTKYFDVQGIPCLVIIGPEGK-TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN--LPRSEFHIGH 344 (399)
Q Consensus 268 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~-i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~ 344 (399)
...++..++|.++|+++++-++.. +.... ..+..+.+..-+.+.... .+........
T Consensus 207 -----~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~---------------~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~ 266 (383)
T KOG0191|consen 207 -----HKSLASRLEVRGYPTLKLFPPGEEDIYYYS---------------GLRDSDSIVSFVEKKERRNIPEPELKEIED 266 (383)
T ss_pred -----HHHHhhhhcccCCceEEEecCCCccccccc---------------ccccHHHHHHHHHhhcCCCCCCcccccccC
Confidence 378899999999999999955555 23322 233345555555554433 1111111111
Q ss_pred c-----ccee----------eeecCCCCCCeecCCCCCCCCcee
Q 015833 345 R-----HELN----------LVSEGTGGGPFICCDCDEQGSGWA 373 (399)
Q Consensus 345 ~-----~~~~----------~~~~~~~~~~~~c~~C~~~~~~w~ 373 (399)
+ +-+. ...+.....++||.+|....+.|.
T Consensus 267 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (383)
T KOG0191|consen 267 KDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYE 310 (383)
T ss_pred ccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccccchhHH
Confidence 1 1111 011455666899999998887764
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=146.53 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=117.3
Q ss_pred hhhcCCCCccc-----CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 172 LLTNHDRGYLL-----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 172 ~~g~~~p~f~l-----~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
.+|..+|+|++ +.+|+ ++++++++||+++|+||+ .||++|..+++.|.+++++|+++ +++|++|
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~-~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~---------g~~vv~I 76 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL---------NCEVLAC 76 (199)
T ss_pred ccCCcCCCCEeeccccCCCCc-EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 47899999995 35667 899999999999999995 68999999999999999999876 8999999
Q ss_pred ecCCCHHH--HHHHHhc---CCCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccCC
Q 015833 246 STDRDQTS--FESYFGT---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 314 (399)
Q Consensus 246 s~d~~~~~--~~~~~~~---~~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 314 (399)
|+|..... |...... .+-++||+..|.+.++++.||+. .+|+.||||++|+|+......+
T Consensus 77 S~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~--------- 147 (199)
T PTZ00253 77 SMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDM--------- 147 (199)
T ss_pred eCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCC---------
Confidence 99965332 2111111 22378999999999999999985 4799999999999998743322
Q ss_pred CCChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCCC
Q 015833 315 PFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 359 (399)
Q Consensus 315 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (399)
+ ..+.++++.+.|+.+-... .....|++.|..|..+
T Consensus 148 ~-~~r~~~e~l~~l~a~~~~~--------~~~~~cp~~w~~g~~~ 183 (199)
T PTZ00253 148 P-VGRNVEEVLRLLEAFQFVE--------KHGEVCPANWKKGDPT 183 (199)
T ss_pred C-CCCCHHHHHHHHHhhhhHH--------hcCCEeCCCCCcCCcc
Confidence 1 2234455555554321100 1246788888766553
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=149.01 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=103.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+|++ +.+|+ ...+++++||++ |+.||+.|||+|..+++.|.+++++|+++ +++|++||+|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~-~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---------gv~vigIS~D~ 72 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGV-KRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---------NTELIGLSVDQ 72 (215)
T ss_pred CCCCCCCCCEeECCCCc-EecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCC
Confidence 57999999999 88998 888899999975 67888999999999999999999999876 89999999996
Q ss_pred C--HHHHHHHHhcC--CCcccccCCchhHHHHHhCCCC-------ccceEEEECCCCcEEecc
Q 015833 250 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 ~--~~~~~~~~~~~--~~~~~p~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~ 301 (399)
. ..+|.++++++ .-+.||+..|.+..+++.||+. ..|++||||++|+|+...
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~ 135 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIM 135 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 3 44577777643 2378999999999999999983 689999999999999874
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=164.72 Aligned_cols=118 Identities=16% Similarity=0.241 Sum_probs=99.6
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAF 82 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-----~~~~~~ 82 (399)
.+..+|+|++.|.+|+.++++ +||+|||+|||+||++|+.++|.|++++++++..+ ++||.|+.+ .+.+.+
T Consensus 34 ~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~ 109 (521)
T PRK14018 34 VPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDF 109 (521)
T ss_pred ccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHH
Confidence 345799999999999999998 99999999999999999999999999999997655 999999863 345677
Q ss_pred HHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++++.+++..+|+ +.+....+.+.|+|.++|+++||++ +|+++...
T Consensus 110 ~~~~~~~~y~~~pV-~~D~~~~lak~fgV~giPTt~IIDk---dGkIV~~~ 156 (521)
T PRK14018 110 QKWYAGLDYPKLPV-LTDNGGTLAQSLNISVYPSWAIIGK---DGDVQRIV 156 (521)
T ss_pred HHHHHhCCCcccce-eccccHHHHHHcCCCCcCeEEEEcC---CCeEEEEE
Confidence 78887777654444 3333488999999999999999999 99998663
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-17 Score=144.92 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=90.2
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNA 81 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~~ 81 (399)
.+.+|+|+++|.+|+.++|++++||+++|+||++||++|+.++|.|+++++++++.| ++|++|+.|. +.+.
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHH
Confidence 467999999999999999999999999999999999999999999999999999887 9999999852 3345
Q ss_pred HHHh-HhcCCCcccccCC--hHHHHHHHhhc-------------CCCCcCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNY-RACMPWLAVPYSD--LETKKALNRKF-------------DIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~-~~~~~~~~~~~~d--~~~~~~l~~~~-------------~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
..++ .++++..+..+.+ ... ......| ++.+.|+.+|||+ +|+++...
T Consensus 84 ~~~~~~~~~~~~fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~---~G~vv~~~ 147 (167)
T PLN02412 84 IQQTVCTRFKAEFPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK---EGKVVQRY 147 (167)
T ss_pred HHHHHHHccCCCCceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC---CCcEEEEE
Confidence 4444 4554421111111 110 1122222 2677899999999 99999774
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=142.71 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=102.4
Q ss_pred ccccCCeEEecCCCCEEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN 80 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~ 80 (399)
|..+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|+++++++++.+ +.+++|++|. +.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~ 78 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPE 78 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHH
Confidence 4679999999999999999998 99999999999999999999999999999998765 9999999975 578
Q ss_pred HHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccc
Q 015833 81 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
.++++.+++++...-+.|.. ..+.+.|++..+|+++|||+ +|++++...
T Consensus 79 ~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~---~G~v~~~~~ 127 (171)
T cd02969 79 NMKAKAKEHGYPFPYLLDET--QEVAKAYGAACTPDFFLFDP---DGKLVYRGR 127 (171)
T ss_pred HHHHHHHHCCCCceEEECCc--hHHHHHcCCCcCCcEEEECC---CCeEEEeec
Confidence 88998887664322222433 68899999999999999999 999987643
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=136.27 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=89.5
Q ss_pred CCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHHHHhHhcCCCccccc
Q 015833 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFNNYRACMPWLAVPY 96 (399)
Q Consensus 22 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-----~~~~~~~~~~~~~~~~~~~~ 96 (399)
|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|+.+ .+.+.++++++++++....+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 57899999999999999999999999999999999999999765 999999863 56788888888877533223
Q ss_pred CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 97 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 97 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.|. ...+.+.|++.++|++++||+ +|+++...
T Consensus 91 ~D~--~~~~~~~~~v~~~P~~~vid~---~G~v~~~~ 122 (126)
T cd03012 91 NDN--DYATWRAYGNQYWPALYLIDP---TGNVRHVH 122 (126)
T ss_pred ECC--chHHHHHhCCCcCCeEEEECC---CCcEEEEE
Confidence 343 378899999999999999999 99998764
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=137.06 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=103.7
Q ss_pred CCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 015833 177 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 254 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 254 (399)
+|+|++ +.+|+ .+++++++||+++|+|| +.||+.|...++.|.+++++++.. ++.+++|+.| +.+..
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~~i~is~d-~~~~~ 70 (140)
T cd02971 2 APDFTLPATDGG-EVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG---------GAEVLGVSVD-SPFSH 70 (140)
T ss_pred CCCceeccCCCc-EEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCC-CHHHH
Confidence 689999 99999 99999999999999999 689999999999999999999654 7999999998 56778
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhCCCCccc---------eEEEECCCCcEEecccc
Q 015833 255 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 255 ~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~ 303 (399)
+++.++++-..+++..|....+++.||+...| +++|||++|+|++++.+
T Consensus 71 ~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 71 KAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred HHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEec
Confidence 88888884478899999888999999988665 89999999999998644
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-17 Score=145.20 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=95.9
Q ss_pred hhcCCCCccc-CCCCCceeeccccCC-cEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~g-k~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|..+|+|++ +.+| .+++++++| |++ |++||++|||.|..+++.|.+++++|+++ +++|++||+|.
T Consensus 1 vG~~aP~F~~~~~~g--~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~---------gv~vigvS~D~ 69 (203)
T cd03016 1 LGDTAPNFEADTTHG--PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR---------NVKLIGLSVDS 69 (203)
T ss_pred CcCCCCCeEEecCCC--cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEEECCC
Confidence 4788999999 7665 589999998 655 55788999999999999999999999876 89999999995
Q ss_pred C--HHHHHHHHhcC--CCcccccCCchhHHHHHhCCCC----c----cceEEEECCCCcEEeccc
Q 015833 250 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ----G----IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 ~--~~~~~~~~~~~--~~~~~p~~~d~~~~~~~~~~v~----~----~P~~~lid~~G~i~~~~~ 302 (399)
. ..+|.+.++.. .-+.||+..|.+..+++.||+. + .|++||||++|+|+....
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~ 134 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILY 134 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEe
Confidence 3 22333333221 2478999999999999999985 2 457999999999998753
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-17 Score=139.46 Aligned_cols=122 Identities=17% Similarity=0.250 Sum_probs=100.5
Q ss_pred cccccccccCCeEEecCCCCEEeccccCCCEEEEEEecC-CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 4 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.....|..+|+|+++|.+|+.+++++++||+++|+||++ ||+.|+.+++.|+++++++++.+ +++|+|+.|. .+++
T Consensus 2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~ 78 (154)
T PRK09437 2 NPLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKL 78 (154)
T ss_pred CcCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHH
Confidence 455679999999999999999999999999999999976 68899999999999999999876 9999999984 5788
Q ss_pred HHhHhcCCCcccccCChHHHHHHHhhcCCCCc------------CeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPWLAVPYSDLETKKALNRKFDIEGI------------PCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~------------P~~~lid~~~~~G~i~~~~ 133 (399)
.++.++++....-+.|. ...+.+.|++... |+.+|||+ +|+|+...
T Consensus 79 ~~~~~~~~~~~~~l~D~--~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~~ 136 (154)
T PRK09437 79 SRFAEKELLNFTLLSDE--DHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDA---DGKIEHVF 136 (154)
T ss_pred HHHHHHhCCCCeEEECC--CchHHHHhCCCcccccccccccCcceEEEEECC---CCEEEEEE
Confidence 88888765321112233 2678899998653 67899999 99998663
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-17 Score=145.39 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=94.5
Q ss_pred ccccccCCeEEecCCCC--EEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 7 YVQQLRRRMTSTKEIGE--EVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~--~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
.+|..+|+|+++|.+|+ +++++++ +||+++|+||++||++|+.++|.++++++ .+ +++++|+.+...++..
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHHH
Confidence 56788999999999997 4555675 79999999999999999999999988764 23 8999999988778788
Q ss_pred HhHhcCCCccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.+++++.+.++ .|. ...+.+.|++.++|++++||+ +|++++..
T Consensus 109 ~~~~~~~~~f~~v~~D~--~~~~~~~~~v~~~P~~~~id~---~G~i~~~~ 154 (173)
T TIGR00385 109 KFLKELGNPYQAILIDP--NGKLGLDLGVYGAPETFLVDG---NGVILYRH 154 (173)
T ss_pred HHHHHcCCCCceEEECC--CCchHHhcCCeeCCeEEEEcC---CceEEEEE
Confidence 8888776432211 133 378899999999999999999 99998663
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-17 Score=146.20 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=100.5
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEE-EEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+|++ +.+|+ ....++++||+++| +||++||+.|..+++.|.+++++|+++ +++|++||+|.
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---------g~~VigvS~Ds 77 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---------NTELIGLSVDS 77 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEECCC
Confidence 47999999999 77886 44335589997665 778999999999999999999999876 89999999996
Q ss_pred CHH--HHHHHHhcC-C-CcccccCCchhHHHHHhCCCC-------ccceEEEECCCCcEEecccch
Q 015833 250 DQT--SFESYFGTM-P-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQGRN 304 (399)
Q Consensus 250 ~~~--~~~~~~~~~-~-~~~~p~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~ 304 (399)
... +|.+++++. + -+.||+..|.+..+++.||+. ..|++||||++|+|+....++
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~ 143 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYP 143 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecC
Confidence 433 566666531 1 378999999999999999973 479999999999999875443
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=140.36 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=100.5
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCC-CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
..+|..+|+|+++|.+|+.+++++++||+++|+||++| |++|+.++|.|+++++++. + ++|++||.|.. .+.++
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~ 92 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKR 92 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHH
Confidence 35688999999999999999999999999999999999 9999999999999999982 3 99999999854 56688
Q ss_pred hHhcCCCcc-cccCChHHHHHHHhhcCCCCcC---------eEEEEcCCCCCCCeeeccc
Q 015833 85 YRACMPWLA-VPYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 85 ~~~~~~~~~-~~~~d~~~~~~l~~~~~v~~~P---------~~~lid~~~~~G~i~~~~~ 134 (399)
+.++.+... ..++|.. ...+++.|++...| ++++||+ +|+|++...
T Consensus 93 f~~~~~~~~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~---~G~I~~~~~ 148 (167)
T PRK00522 93 FCGAEGLENVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDE---NNKVVYSEL 148 (167)
T ss_pred HHHhCCCCCceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECC---CCeEEEEEE
Confidence 888776432 2333422 25899999998777 9999999 999997754
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-17 Score=136.57 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=96.9
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecCC-CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 86 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~ 86 (399)
+|..+|+|++++.+|++++|++++||+++|+||++| |++|+.++|.|++++++++ + +.+++|+.|. .+..+++.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHH
Confidence 588999999999999999999999999999999998 6999999999999999973 3 8999999986 45667777
Q ss_pred hcCCCcccc-cCChHHHHHHHhhcCCCC------cCeEEEEcCCCCCCCeeeccc
Q 015833 87 ACMPWLAVP-YSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 87 ~~~~~~~~~-~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~~G~i~~~~~ 134 (399)
++++...++ ++|.. ...+.+.|++.. .|+.+|||+ +|+|+....
T Consensus 77 ~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~---~G~I~~~~~ 127 (143)
T cd03014 77 GAEGVDNVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDE---NGKVIYVEL 127 (143)
T ss_pred HhcCCCCceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcC---CCeEEEEEE
Confidence 766642232 22321 268888999863 799999999 999987653
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=135.79 Aligned_cols=113 Identities=18% Similarity=0.352 Sum_probs=96.1
Q ss_pred CCCccc-CCCCCceeeccccC-CcEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 015833 177 DRGYLL-GHPPDEKVPVSSLV-GKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~-gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 253 (399)
+|+|++ +.+|+ .++++++. ++++ |++||++||++|+.++|.|.++++++.+. ++.+|+|+.|.. +.
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~---------~v~vv~V~~~~~-~~ 70 (149)
T cd02970 2 APDFELPDAGGE-TVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL---------GVELVAVGPESP-EK 70 (149)
T ss_pred CCCccccCCCCC-EEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc---------CeEEEEEeCCCH-HH
Confidence 689999 99999 99999875 4555 55556999999999999999999999865 899999999854 44
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhCCCC-----------------------------ccceEEEECCCCcEEecc
Q 015833 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------------------------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 254 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~ 301 (399)
..++.+..+ +++|+..|.+..+.+.||+. .+|++||||++|+|++.+
T Consensus 71 ~~~~~~~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 71 LEAFDKGKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred HHHHHHhcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 556666655 78999999999999999984 799999999999999875
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=132.16 Aligned_cols=107 Identities=22% Similarity=0.377 Sum_probs=95.2
Q ss_pred CCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-CHHHHH
Q 015833 178 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQTSFE 255 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-~~~~~~ 255 (399)
|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|++|. +.++++
T Consensus 1 p~f~l~~~~g~-~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------------~~~i~i~~~~~~~~~~~ 65 (123)
T cd03011 1 PLFTATTLDGE-QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------------YPVVSVALRSGDDGAVA 65 (123)
T ss_pred CCceeecCCCC-EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------------CCEEEEEccCCCHHHHH
Confidence 78889 89999 9999999999999999999999999999999988765 3478888875 478899
Q ss_pred HHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 256 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 256 ~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.++++ +.+|+..|.+..+++.|++.++|+++|+|++| ++.+.
T Consensus 66 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~ 109 (123)
T cd03011 66 RFMQKKG-YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT 109 (123)
T ss_pred HHHHHcC-CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence 9999887 68888888888999999999999999999999 77663
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=135.19 Aligned_cols=116 Identities=25% Similarity=0.374 Sum_probs=98.1
Q ss_pred CCCccc-CCCCCceeeccccCCcEEEEEEecCCChh-hhhhHHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEecCC---C
Q 015833 177 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTDR---D 250 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~vv~is~d~---~ 250 (399)
+|+|++ +.+|+ .+++++++||+++|+||++||++ |..+++.|.++++++++. + .++++++|+.|. +
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~-------~~~~v~~v~vs~d~~~d~ 73 (142)
T cd02968 2 GPDFTLTDQDGR-PVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD-------GGDDVQVVFISVDPERDT 73 (142)
T ss_pred CCceEEEcCCCC-EEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh-------hcCceEEEEEEECCCCCC
Confidence 689999 99999 99999999999999999999997 999999999999999865 1 259999999974 4
Q ss_pred HHHHHHHHhcCCCcccccCCch---hHHHHHhCCCCcc--------------ceEEEECCCCcEEecc
Q 015833 251 QTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGI--------------PCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~---~~~~~~~~~v~~~--------------P~~~lid~~G~i~~~~ 301 (399)
.+.+++++++++ ..+++..+. ...+++.||+... |+++|||++|+|+.+.
T Consensus 74 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 74 PEVLKAYAKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 577888988876 456666553 4789999997544 4699999999999763
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=133.38 Aligned_cols=118 Identities=25% Similarity=0.435 Sum_probs=98.3
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcc-cHhhHHHHHHHHHHHhcCC-CcEEEEEEecCC---ChHHHHHh
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---DLNAFNNY 85 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~ii~Vs~D~---~~~~~~~~ 85 (399)
.+|+|+++|.+|+++++++++||+++|.||++||++ |.++++.|+++++++++.+ .++++++|+.|. +.+.++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 379999999999999999999999999999999997 9999999999999998753 469999999985 35778888
Q ss_pred HhcC--CCcccccCChHHHHHHHhhcCCCC--------------cCeEEEEcCCCCCCCeeec
Q 015833 86 RACM--PWLAVPYSDLETKKALNRKFDIEG--------------IPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~--~~~~~~~~d~~~~~~l~~~~~v~~--------------~P~~~lid~~~~~G~i~~~ 132 (399)
.+++ +|..+.. .......+.+.|++.. .|..+|||+ +|+|+..
T Consensus 81 ~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~ 139 (142)
T cd02968 81 AKAFGPGWIGLTG-TPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDP---DGKLVRY 139 (142)
T ss_pred HHHhCCCcEEEEC-CHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECC---CCCEEEe
Confidence 8876 4665554 2333478899998643 467999999 9999864
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=135.01 Aligned_cols=122 Identities=18% Similarity=0.175 Sum_probs=99.6
Q ss_pred ccccccCCeEEecCCCCEEeccccCC-CEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
.+|..+|+|++.+.+|+.+++++++| |+++|.|| ++||+.|+..+|.|+++++++++.+ +++++|+.|. .+..++
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~-~~~~~~ 78 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDS-PFSLRA 78 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCC-HHHHHH
Confidence 46889999999999999999999999 99888888 9999999999999999999998765 9999999875 456788
Q ss_pred hHhcCCCcccccCChHHHHHHHhhcCCCC------cCeEEEEcCCCCCCCeeeccc
Q 015833 85 YRACMPWLAVPYSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 85 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~~G~i~~~~~ 134 (399)
+.++++....-++|......+.+.|++.. .|++++||+ +|++++...
T Consensus 79 ~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~---~G~v~~~~~ 131 (149)
T cd03018 79 WAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDR---DGIIRYAWV 131 (149)
T ss_pred HHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECC---CCEEEEEEe
Confidence 88876532222334322267888999873 348999999 999987743
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=134.56 Aligned_cols=115 Identities=24% Similarity=0.309 Sum_probs=98.1
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
.+|+|+++|.+|+.+++++++||+++|+|| ++||+.|+.+++.|+++++++.+.+ +++++|+.|. .+.+.++.+.+
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~ 78 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDS-VESHAKFAEKY 78 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHh
Confidence 589999999999999999999999999999 5899999999999999999998765 9999999985 47788888876
Q ss_pred CCcccccCChHHHHHHHhhcCCCCc---------CeEEEEcCCCCCCCeeecc
Q 015833 90 PWLAVPYSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 90 ~~~~~~~~d~~~~~~l~~~~~v~~~---------P~~~lid~~~~~G~i~~~~ 133 (399)
+.....+.|.+ ..+.+.|++... |+.++||+ +|++++..
T Consensus 79 ~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~---~G~v~~~~ 126 (140)
T cd03017 79 GLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDP---DGKIVKVW 126 (140)
T ss_pred CCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECC---CCEEEEEE
Confidence 54222233443 688999999988 99999999 99998764
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=138.39 Aligned_cols=135 Identities=8% Similarity=0.012 Sum_probs=101.5
Q ss_pred hhhcCCCCccc-CC-----C-----CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCE
Q 015833 172 LLTNHDRGYLL-GH-----P-----PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF 240 (399)
Q Consensus 172 ~~g~~~p~f~l-~~-----~-----g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 240 (399)
.+|.+.|...+ +. + .+ .++.++++||+++|+|||+||++|+.+.|.+.++.+ + ++
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~-~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~---------~~ 89 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQ-PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A---------KF 89 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccce-eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c---------CC
Confidence 35777777765 22 2 23 567788999999999999999999999999999832 2 57
Q ss_pred EE------EEEecCCCHHHHHHH----HhcCCCcccc---cCCchhHHHHHhCCCCccceE-EEECCCCcEEecccchhh
Q 015833 241 EV------VFVSTDRDQTSFESY----FGTMPWLALP---FGDPTIKELTKYFDVQGIPCL-VIIGPEGKTVTKQGRNLI 306 (399)
Q Consensus 241 ~v------v~is~d~~~~~~~~~----~~~~~~~~~p---~~~d~~~~~~~~~~v~~~P~~-~lid~~G~i~~~~~~~~~ 306 (399)
.+ ++|+.|........| +++.. ..+| +..|....+...|++.++|++ ||||++|+|+.+..|
T Consensus 90 ~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G--- 165 (184)
T TIGR01626 90 PPVKYQTTTIINADDAIVGTGMFVKSSAKKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG--- 165 (184)
T ss_pred CcccccceEEEECccchhhHHHHHHHHHHHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC---
Confidence 77 999999765444444 44333 3444 777778889999999999988 899999999998654
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHh
Q 015833 307 NLYQENAYPFTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 307 ~~~g~~~~p~~~~~~~~l~~~~~~~~ 332 (399)
+.+++.++.+...+++++
T Consensus 166 --------~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 166 --------ALSDSDIQTVISLVNGLL 183 (184)
T ss_pred --------CCCHHHHHHHHHHHHHHh
Confidence 346666666766666654
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=143.51 Aligned_cols=120 Identities=13% Similarity=0.185 Sum_probs=97.0
Q ss_pred hhhcCCCCccc-CCCCCceeeccc-cCCcEEE-EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSS-LVGKTVG-LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~-~~gk~vl-l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|..+|+|++ +.+|. +++++ ++||+++ ++||++||+.|..+++.|.+++++|+++ +++|++||+|
T Consensus 10 ~vG~~aPdF~~~~~~g~--~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~---------~v~VigvS~D 78 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP--IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL---------NTELIGLSID 78 (222)
T ss_pred cCCCcCCCcEeEcCCCC--EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEECC
Confidence 47999999999 77775 67766 5999655 5677999999999999999999999876 8999999999
Q ss_pred CCH--HHHHHHHhc-CC-CcccccCCchhHHHHHhCCCC-------ccceEEEECCCCcEEeccc
Q 015833 249 RDQ--TSFESYFGT-MP-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 ~~~--~~~~~~~~~-~~-~~~~p~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~ 302 (399)
... .+|.+.+.+ .+ -+.||+..|.+..+++.||+. ..|++||||++|+|+....
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 143 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILY 143 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEe
Confidence 643 234443332 22 368999999999999999975 5799999999999987753
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=131.95 Aligned_cols=120 Identities=21% Similarity=0.258 Sum_probs=105.7
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
.+.+|..||+|+|++.+|++++|++++||+|+|+|| ..++|.|..++-.+++.+.+|.+.| .+|++||.|.. .+.+
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~-~~~~ 79 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSP-KSHK 79 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHHH
Confidence 456899999999999999999999999999999999 8999999999999999999999886 99999999854 7788
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCeeec
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++++..+...+|.+ .++++.||+- ..++++|||+ +|+|.+.
T Consensus 80 ~F~~k~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~---dG~I~~~ 135 (157)
T COG1225 80 KFAEKHGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP---DGKIRYV 135 (157)
T ss_pred HHHHHhCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECC---CCeEEEE
Confidence 99998886555555665 7899999983 4689999999 9999865
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=171.51 Aligned_cols=119 Identities=22% Similarity=0.298 Sum_probs=104.6
Q ss_pred hhcCCCCccc-C--CCCCceeec-cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec-
Q 015833 173 LTNHDRGYLL-G--HPPDEKVPV-SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST- 247 (399)
Q Consensus 173 ~g~~~p~f~l-~--~~g~~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~- 247 (399)
.|..+|+|.. + .+|+ .+++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.|++|+.
T Consensus 393 ~g~~~p~f~~~~~~~~g~-~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~---------~~~vvgV~~~ 462 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTA-PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ---------PFTVVGVHSA 462 (1057)
T ss_pred cCCcCCCCcccccccCCc-cccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC---------CeEEEEEecc
Confidence 4788999987 3 6888 8988 6899999999999999999999999999999999865 799999974
Q ss_pred --C--CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 248 --D--RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 248 --d--~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
| .+.+++++++.+.+ +.+|+..|....+.+.|+|.++|+++|||++|+++.+..
T Consensus 463 ~~D~~~~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 463 KFDNEKDLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred cccccccHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence 3 25678888988777 678888888889999999999999999999999998843
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=125.41 Aligned_cols=112 Identities=24% Similarity=0.377 Sum_probs=97.5
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHHhHhcCCCc
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNYRACMPWL 92 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~-~~~~~~~~~~~~~~ 92 (399)
+|.+.+.+|+++++++++||+++|+||++||++|+..++.|.++.+++++. ++.++.|+.|.. .+.++++.+++++.
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 578899999999999999999999999999999999999999999999744 499999999987 89999999987743
Q ss_pred ccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 93 AVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 93 ~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
...+.+. ...+.+.|++.++|+++++|+ +|+++..
T Consensus 79 ~~~~~~~--~~~~~~~~~~~~~P~~~l~d~---~g~v~~~ 113 (116)
T cd02966 79 FPVLLDP--DGELAKAYGVRGLPTTFLIDR---DGRIRAR 113 (116)
T ss_pred cceEEcC--cchHHHhcCcCccceEEEECC---CCcEEEE
Confidence 3333233 378999999999999999999 9988864
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=139.16 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=89.6
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEE-EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN 80 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~ 80 (399)
+..+|+|+++|.+|++++|++++||++ ++.|||+|||+|+.++|.|+++++++++.| ++|++|+.|. +.+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHH
Confidence 457899999999999999999999965 566799999999999999999999998876 9999999752 346
Q ss_pred HHHHhHh-cCCCcccccCC--hH--HHHHHH------------hhcCCCCcCe---EEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRA-CMPWLAVPYSD--LE--TKKALN------------RKFDIEGIPC---LVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~d--~~--~~~~l~------------~~~~v~~~P~---~~lid~~~~~G~i~~~~ 133 (399)
...++.. ++++.+..+.| .. ....+. ..+++.++|+ .+|||+ +|+|+...
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~---~G~Iv~~~ 164 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDG---QGKVVKYF 164 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECC---CCCEEEEE
Confidence 6777764 44432221212 11 101121 1246778995 699999 99999764
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-16 Score=136.57 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=94.6
Q ss_pred cccccCCeEEecCCC----CEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 8 VQQLRRRMTSTKEIG----EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G----~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
+|..+|+|++++.+| +.++|++++||+++|+|| ++||++|..+++.|+++++++.+.+ +.+++||.|... ..
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~-~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHF-SH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHH-HH
Confidence 478899999999887 789999999999999999 8999999999999999999998876 999999998643 22
Q ss_pred HHhHhc---------CCCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeeccc
Q 015833 83 NNYRAC---------MPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 83 ~~~~~~---------~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
.++.+. .+|..+ .|. ...+.+.|++. .+|+.+|||+ +|+|++...
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l--~D~--~~~~~~~~gv~~~~~~~~~p~~~lID~---~G~I~~~~~ 137 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLL--ADP--KKKISRDYGVLDEEEGVALRGTFIIDP---EGIIRHITV 137 (173)
T ss_pred HHHHHhhhhhCCccCcceeEE--ECC--chhHHHHhCCccccCCceeeEEEEECC---CCeEEEEEe
Confidence 233322 233222 233 37888999986 5789999999 999997753
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-16 Score=134.52 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=87.6
Q ss_pred CCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHHHh
Q 015833 13 RRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNNY 85 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~~~~~~~ 85 (399)
-+|+++|.+|+++++++++||+++|+|||+|||+|+.++|.|+++++++++.| +++++|+.+ .+.+...++
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999876 999999852 345778888
Q ss_pred Hhc-CCCcccccCCh---HHHHHHHhhcC---CCCcCe----EEEEcCCCCCCCeeecc
Q 015833 86 RAC-MPWLAVPYSDL---ETKKALNRKFD---IEGIPC----LVVLQPYDDKDDATLHD 133 (399)
Q Consensus 86 ~~~-~~~~~~~~~d~---~~~~~l~~~~~---v~~~P~----~~lid~~~~~G~i~~~~ 133 (399)
+++ ++..+..+.+. .........|. ...+|+ .+|||+ +|+++...
T Consensus 81 ~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~---~G~v~~~~ 136 (153)
T TIGR02540 81 ARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNP---EGQVVKFW 136 (153)
T ss_pred HHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcC---CCcEEEEE
Confidence 864 55322222221 00011111222 235787 999999 99999764
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-16 Score=137.01 Aligned_cols=117 Identities=24% Similarity=0.352 Sum_probs=93.8
Q ss_pred ccccccCCeEEec-CCCC--EEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 7 YVQQLRRRMTSTK-EIGE--EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d-~~G~--~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.+|..+|+|++++ .+|+ .+++++++||+++|+|| ++||++|+.+++.|+++++++++.| ++|++||.|... ..
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~-~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF-VH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH-HH
Confidence 4688999999998 5776 68888999999999999 9999999999999999999998776 999999998642 23
Q ss_pred HHhHh------cCCCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRA------CMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~------~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++.+ ++++. .++|. ...+++.|++. ..|++++||+ +|+|+...
T Consensus 80 ~~~~~~~~~~~~l~fp--llsD~--~~~~a~~~gv~~~~~g~~~p~tfiID~---~G~I~~~~ 135 (187)
T TIGR03137 80 KAWHDTSEAIGKITYP--MLGDP--TGVLTRNFGVLIEEAGLADRGTFVIDP---EGVIQAVE 135 (187)
T ss_pred HHHHhhhhhccCccee--EEECC--ccHHHHHhCCcccCCCceeeEEEEECC---CCEEEEEE
Confidence 33322 22221 12344 37899999986 4699999999 99998764
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=128.27 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=96.8
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
.+|+|++.|.+|+++++++++||+++|+|| ++||++|..++|.|+++++++++.+ +.+++|+.|. .+..+++.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~-~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDS-PFSHKAWAEKE 77 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHhcc
Confidence 379999999999999999999999999999 7899999999999999999997665 9999999874 46677888866
Q ss_pred -CCcccccCChHHHHHHHhhcCCCCcC---------eEEEEcCCCCCCCeeeccch
Q 015833 90 -PWLAVPYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDGV 135 (399)
Q Consensus 90 -~~~~~~~~d~~~~~~l~~~~~v~~~P---------~~~lid~~~~~G~i~~~~~~ 135 (399)
+.....+.|.. ..+.+.|++...| +.++||+ +|++++....
T Consensus 78 ~~~~~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~---~g~i~~~~~~ 128 (140)
T cd02971 78 GGLNFPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDP---DGKIRYVEVE 128 (140)
T ss_pred cCCCceEEECCC--hHHHHHcCCccccccccCceeEEEEEECC---CCcEEEEEec
Confidence 43222223443 6888999988665 8999999 9999977543
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=132.38 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=80.7
Q ss_pred cCCCCcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 015833 175 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 254 (399)
Q Consensus 175 ~~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 254 (399)
.+.++|.+ .+|+ .+++++++ +|+||++||++|++++|.|++++++| +++|++|++|...+
T Consensus 53 ~~~~~f~l-~dG~-~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~------------g~~Vi~Vs~D~~~~-- 112 (181)
T PRK13728 53 PAPRWFRL-SNGR-QVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY------------GFSVFPYTLDGQGD-- 112 (181)
T ss_pred CCCCccCC-CCCC-EeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc------------CCEEEEEEeCCCCC--
Confidence 35677886 4888 99999988 77899999999999999999999886 47899999985532
Q ss_pred HHHHhcCCCcccccCCc-hhHHHHHhCCC--CccceEEEECCCCcEEe
Q 015833 255 ESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 255 ~~~~~~~~~~~~p~~~d-~~~~~~~~~~v--~~~P~~~lid~~G~i~~ 299 (399)
..||+..| ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ---------~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 ---------TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred ---------CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 57888774 56678889995 69999999999999864
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.4e-16 Score=127.12 Aligned_cols=106 Identities=22% Similarity=0.405 Sum_probs=88.5
Q ss_pred CCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-ChHHHHHhHhcCCC
Q 015833 13 RRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-DLNAFNNYRACMPW 91 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-~~~~~~~~~~~~~~ 91 (399)
|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|++++++ +.+++|+.|. +.+.+.++.++++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 899999999999999999999999999999999999999999999876 4577888775 47888888887663
Q ss_pred ccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 92 LAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 92 ~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+++ .|. ..++.+.|++.++|+++++++ +| ++..
T Consensus 74 -~~~~~~d~--~~~~~~~~~i~~~P~~~vid~---~g-i~~~ 108 (123)
T cd03011 74 -GFPVINDP--DGVISARWGVSVTPAIVIVDP---GG-IVFV 108 (123)
T ss_pred -CccEEECC--CcHHHHhCCCCcccEEEEEcC---CC-eEEE
Confidence 2221 132 268999999999999999998 88 6643
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=131.41 Aligned_cols=161 Identities=17% Similarity=0.268 Sum_probs=124.2
Q ss_pred HhhhcCCCCccc-CC-CC---CceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 015833 171 NLLTNHDRGYLL-GH-PP---DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~-~g---~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~ 244 (399)
.++|.++|+|+. .. .| . +++++++.||+++|+|| +...+.|..++..+.+.|++|+++ |++|++
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~-~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---------g~eVig 72 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFE-EITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---------GVEVIG 72 (194)
T ss_pred cccCCcCCCcEEEEEecCceee-EEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---------CCEEEE
Confidence 468999999999 44 45 3 79999999999999999 668999999999999999999987 899999
Q ss_pred EecCC--CHHHHHHHHhcCCC---cccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccC
Q 015833 245 VSTDR--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENA 313 (399)
Q Consensus 245 is~d~--~~~~~~~~~~~~~~---~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~ 313 (399)
||+|+ +..+|++...+.+. +.||+..|.+.++++.||+- ....+||||++|+|+.....++ ..|.
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~--~iGR-- 148 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPL--TIGR-- 148 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecC--CCCc--
Confidence 99996 45677777665554 78999999999999999984 4568999999999987754433 2332
Q ss_pred CCCChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCCC
Q 015833 314 YPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 359 (399)
Q Consensus 314 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (399)
.++++...++.+ .....| ...||..|-.|...
T Consensus 149 ------n~dEilR~idAl-------q~~~~h-g~vcPanW~~G~~~ 180 (194)
T COG0450 149 ------NVDEILRVIDAL-------QFVAKH-GEVCPANWKPGDKT 180 (194)
T ss_pred ------CHHHHHHHHHHH-------HHHHHh-CCCccCCCCCCCcc
Confidence 224444444321 133344 66788888776654
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=144.99 Aligned_cols=71 Identities=21% Similarity=0.422 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
....++|.||||||+||++++|.+++++..++..+.++.+..| |++....++.+|+
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakV------------------------Dat~~~~~~~~y~ 96 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKV------------------------DATEESDLASKYE 96 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEe------------------------ecchhhhhHhhhc
Confidence 4568999999999999999999999999999998777888888 5555599999999
Q ss_pred CCCcCeEEEEcCCCCCCCe
Q 015833 111 IEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i 129 (399)
|+++||+.++. +|+.
T Consensus 97 v~gyPTlkiFr----nG~~ 111 (493)
T KOG0190|consen 97 VRGYPTLKIFR----NGRS 111 (493)
T ss_pred CCCCCeEEEEe----cCCc
Confidence 99999999998 6774
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=128.01 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=91.0
Q ss_pred ccCCeEEecCCCCEEeccccC-CC-EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 11 LRRRMTSTKEIGEEVKVSDLE-GK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~-gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
.+|+|+++|.+|+.++++++. +| .++++||++||++|+.++|.|+++++++++.+ +.+++|+.|... ....+.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~-~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPE-KLEAFDKG 77 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHH-HHHHHHHh
Confidence 379999999999999999874 45 55555569999999999999999999998776 999999998654 34466666
Q ss_pred CCCcccccCChHHHHHHHhhcCCC-----------------------------CcCeEEEEcCCCCCCCeeecc
Q 015833 89 MPWLAVPYSDLETKKALNRKFDIE-----------------------------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 89 ~~~~~~~~~d~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++....+.|.+ ..+.+.|++. .+|..+|||+ +|+|+...
T Consensus 78 ~~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~---~g~i~~~~ 146 (149)
T cd02970 78 KFLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGP---DGTILFAH 146 (149)
T ss_pred cCCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECC---CCeEEEEe
Confidence 554322233443 7888999984 7999999999 99988653
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=133.63 Aligned_cols=119 Identities=20% Similarity=0.335 Sum_probs=93.8
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEE-EEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HH-
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AF- 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~--~~- 82 (399)
.+|..+|+|++.+..| .+++++++||+++| +||++||++|+.+++.|++++++|++.| +++++||+|.... ++
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 4689999999999888 69999999997766 6889999999999999999999999876 9999999986532 33
Q ss_pred HHhHhcCCC-cccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPW-LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++.++.+. ..+| +.|.+ ..+++.|++. .+|.++|||+ +|+|+...
T Consensus 80 ~~~~~~~g~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~---~G~I~~~~ 133 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDP---NQIVRWMI 133 (202)
T ss_pred HhHHHhcCCCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECC---CCEEEEEE
Confidence 233333331 1222 23443 8899999984 5899999999 99998653
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-15 Score=131.68 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=98.3
Q ss_pred CCccccccccccCCeEEec----CCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 1 MSLSQWYVQQLRRRMTSTK----EIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 1 ~~~~~~~~~~~~p~f~l~d----~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
||+....+|..+|+|++.+ .+|++++|++++||+++|+|| +.||++|..+++.|+++++++++.| ++|++||.
T Consensus 1 ~~~~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~ 78 (199)
T PTZ00253 1 MSCGDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSM 78 (199)
T ss_pred CCccccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeC
Confidence 7888888999999999654 567899999999999999999 5889999999999999999999876 99999999
Q ss_pred CCChHHHHHhHh---c--CCCcccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 76 DEDLNAFNNYRA---C--MPWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 76 D~~~~~~~~~~~---~--~~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
|........... . .+-+.+| +.|. ..++++.|++. .+|..+|||+ +|+++...
T Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~---~G~i~~~~ 143 (199)
T PTZ00253 79 DSEYAHLQWTLQERKKGGLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDP---KGMLRQIT 143 (199)
T ss_pred CCHHHHHHHHhChHhhCCccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECC---CCEEEEEE
Confidence 865432211111 1 1111222 2243 48999999985 4799999999 99998753
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=122.33 Aligned_cols=98 Identities=21% Similarity=0.403 Sum_probs=76.4
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
..||+++|+||++||++|+.+.|.|.++++++.+ .+.++.|++|.+. ..
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~----------~~~~v~v~vd~~~---------------------~~ 66 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD----------QVNFVMLNVDNPK---------------------WL 66 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc----------CeeEEEEEcCCcc---------------------cH
Confidence 4589999999999999999999999999998864 3789999888542 14
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCC
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 337 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~ 337 (399)
.+++.|+|.++|++++||++|+++.+.. |.. .. ++|.+.+++++.+.+.
T Consensus 67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~~-------G~~----~~---~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 67 PEIDRYRVDGIPHFVFLDREGNEEGQSI-------GLQ----PK---QVLAQNLDALVAGEPL 115 (142)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEe-------CCC----CH---HHHHHHHHHHHcCCCC
Confidence 6788999999999999999999998743 311 22 4556666666554433
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-15 Score=128.65 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=71.4
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC------
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------ 248 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d------ 248 (399)
..++|++ +.+|+ .+++++++||+|||.|||+||+.|. .++.|++++++|+++ +++|++|+++
T Consensus 4 ~~~~f~~~~~~G~-~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~---------gl~Vlg~p~nqf~~qe 72 (183)
T PRK10606 4 SILTTVVTTIDGE-VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ---------GFVVLGFPCNQFLGQE 72 (183)
T ss_pred CccCcEeECCCCC-EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC---------CeEEEEeeccccccCC
Confidence 4688999 99999 9999999999999999999999996 699999999999876 8999999985
Q ss_pred -CCHHHHHHHHh-cCCCcccccC
Q 015833 249 -RDQTSFESYFG-TMPWLALPFG 269 (399)
Q Consensus 249 -~~~~~~~~~~~-~~~~~~~p~~ 269 (399)
.+.++++++++ +.+ ++||+.
T Consensus 73 ~~~~~ei~~f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 73 PGSDEEIKTYCRTTWG-VTFPMF 94 (183)
T ss_pred CCCHHHHHHHHHHccC-CCceeE
Confidence 35678888887 454 677776
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-15 Score=132.59 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=96.8
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEE-EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--hHHHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--LNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~--~~~~~ 83 (399)
.+|..+|+|++.+.+|+.+.+++++||++ |++||++|||+|.++++.|++++++|++.| ++|++||+|.. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 57899999999999999888899999975 678889999999999999999999999887 99999999974 34555
Q ss_pred HhHhcC---CCcccccCChHHHHHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACM---PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~---~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++++. +..+..++|. ..++++.||+. ..|++++||+ +|+|+...
T Consensus 81 ~~i~~~~~~~i~fPil~D~--~~~va~~yg~~~~~~~~~~~R~tfIID~---dG~Ir~~~ 135 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADD--LGKVSNQLGMIHPGKGTNTVRAVFIVDD---KGTIRLIM 135 (215)
T ss_pred HhHHHhcCCCCceeEEECC--CchHHHHcCCCccCCCCceeeEEEEECC---CCEEEEEE
Confidence 655532 2222223343 37889999983 5899999999 99998763
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=161.74 Aligned_cols=121 Identities=21% Similarity=0.164 Sum_probs=99.5
Q ss_pred cccccccCCeEEec--CCCCEEec-cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec---C--C
Q 015833 6 WYVQQLRRRMTSTK--EIGEEVKV-SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS---D--E 77 (399)
Q Consensus 6 ~~~~~~~p~f~l~d--~~G~~v~l-~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~---D--~ 77 (399)
...|+.+|+|..++ .+|+++++ ++++||+|+|+|||+||++|+.++|.|+++++++++.+ ++|++|+. | +
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccc
Confidence 45688999999876 68999998 68999999999999999999999999999999998765 99999974 3 3
Q ss_pred ChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 78 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+.++++.++.++......|. ...+.+.|+|.++|+++|||+ +|+++.+.
T Consensus 469 ~~~~~~~~~~~~~i~~pvv~D~--~~~~~~~~~V~~iPt~ilid~---~G~iv~~~ 519 (1057)
T PLN02919 469 DLEAIRNAVLRYNISHPVVNDG--DMYLWRELGVSSWPTFAVVSP---NGKLIAQL 519 (1057)
T ss_pred cHHHHHHHHHHhCCCccEEECC--chHHHHhcCCCccceEEEECC---CCeEEEEE
Confidence 4577888888766322112233 267889999999999999999 99998763
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=114.25 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=63.7
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
.+|++|+|+|||+||++|+.+.|.|.++++++ . ++.++.|++|.+.+ ..
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~----------~v~~~~vd~d~~~~--------------------~~ 61 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N----------DVVFLLVNGDENDS--------------------TM 61 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C----------CCEEEEEECCCChH--------------------HH
Confidence 35899999999999999999999999999888 2 47788888875521 25
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++.|+|.++||++++ ++|+++.+.
T Consensus 62 ~l~~~~~V~~~Pt~~~~-~~G~~v~~~ 87 (103)
T cd02985 62 ELCRREKIIEVPHFLFY-KDGEKIHEE 87 (103)
T ss_pred HHHHHcCCCcCCEEEEE-eCCeEEEEE
Confidence 78999999999998888 899998774
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=129.48 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=92.9
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEE-EEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~--~~~ 83 (399)
.+|..+|+|++.+.+|+...+++++||+++| +||++||++|.++++.|++++++|++.| ++|++||+|.... +|.
T Consensus 8 ~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 8 LIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWV 85 (215)
T ss_pred cCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHH
Confidence 5699999999999999744335589997766 7789999999999999999999999876 9999999987643 454
Q ss_pred HhHhc---CCCcccccCChHHHHHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRAC---MPWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.++ .+..+..++|.. ..+++.||+. ..|..+|||+ +|+|....
T Consensus 86 ~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~ 140 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDD---KGTVRLIL 140 (215)
T ss_pred hhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECC---CCEEEEEE
Confidence 44442 222222233433 8999999973 3799999999 99998764
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=130.74 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=94.5
Q ss_pred ccccccccCCeEEec-CCC--CEEecccc-CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-
Q 015833 5 QWYVQQLRRRMTSTK-EIG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED- 78 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d-~~G--~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~- 78 (399)
...+|..+|+|++++ .+| ++++|+++ +||+++|+|| ++||++|.++++.|++++++|++.| ++|++||.|..
T Consensus 67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~ 144 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPF 144 (261)
T ss_pred cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH
Confidence 446899999999987 455 46899998 8988888888 9999999999999999999999887 99999999873
Q ss_pred -hHHHHHh-Hhc---CCCcccccCChHHHHHHHhhcCCC-----CcCeEEEEcCCCCCCCeeeccc
Q 015833 79 -LNAFNNY-RAC---MPWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 79 -~~~~~~~-~~~---~~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~~G~i~~~~~ 134 (399)
..+|.+. .++ .+..+..++|. ..++++.||+. ..|+.+|||+ +|+|++...
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~--~~~iakayGv~~~~g~a~R~tFIID~---dG~I~~~~~ 205 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDI--SREVSKSFGLLRDEGFSHRASVLVDK---AGVVKHVAV 205 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcC--ChHHHHHcCCCCcCCceecEEEEECC---CCEEEEEEE
Confidence 2233332 222 12111122343 38899999985 5899999999 999987643
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-14 Score=124.97 Aligned_cols=120 Identities=25% Similarity=0.337 Sum_probs=93.6
Q ss_pred ccccccCCeEEecC-CC--CEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 7 YVQQLRRRMTSTKE-IG--EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d~-~G--~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.+|..+|+|+++-. +| .+++|++++||+++|+|| ++||++|..+++.|+++++++.+.| +++++||.|.. ...
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~-~~~ 79 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTH-FTH 79 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHH
Confidence 47889999998863 34 467888999999999999 9999999999999999999998876 99999999865 334
Q ss_pred HHhHhcC----CCcccccCChHHHHHHHhhcCC----CCc--CeEEEEcCCCCCCCeeeccc
Q 015833 83 NNYRACM----PWLAVPYSDLETKKALNRKFDI----EGI--PCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 83 ~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v----~~~--P~~~lid~~~~~G~i~~~~~ 134 (399)
+++.+.. +..+...+|. ...+++.|++ .+. |++++||+ +|+|++...
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~---~G~I~~~~~ 136 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDP---QGIIQAIEV 136 (187)
T ss_pred HHHHHhhccccCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECC---CCEEEEEEE
Confidence 4444321 2111122343 4899999998 355 99999999 999987743
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=126.82 Aligned_cols=119 Identities=23% Similarity=0.312 Sum_probs=91.0
Q ss_pred cccccCCeEEecCC--CCE---Eecccc-CCCEEEEEEec-CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh-
Q 015833 8 VQQLRRRMTSTKEI--GEE---VKVSDL-EGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL- 79 (399)
Q Consensus 8 ~~~~~p~f~l~d~~--G~~---v~l~~~-~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~- 79 (399)
+|..+|+|++.+.. |+. ++++++ +||+++|+||+ .||++|+++++.|++++++|++.| ++|++||.|...
T Consensus 4 vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~ 81 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFV 81 (200)
T ss_pred CCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHH
Confidence 78999999999864 453 455555 89999999998 599999999999999999999876 999999998543
Q ss_pred -HHHHH-hHhcCCC--cccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 80 -NAFNN-YRACMPW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 -~~~~~-~~~~~~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
..|.+ +.++.+. +.+| ++|. ...+++.|++. ..|..++||+ +|+|++..
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfiID~---~G~I~~~~ 141 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADV--KREIQKAYGIEHPDEGVALRGSFLIDA---NGIVRHQV 141 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECC--CcHHHHHcCCccCCCCcEEeEEEEECC---CCEEEEEE
Confidence 23333 2222221 1222 2344 37899999997 6999999999 99998763
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-14 Score=125.67 Aligned_cols=118 Identities=13% Similarity=0.199 Sum_probs=89.0
Q ss_pred cccccCCeEEecCCCCEEeccccCC-CEE-EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HHHH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEG-KVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NAFN 83 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~g-k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~--~~~~ 83 (399)
+|..+|+|++.+.+|. +++++++| |++ |++||++|||.|..+++.|++++++|++.| ++|++||+|... .++.
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHH
Confidence 4788999999999985 89999988 655 557889999999999999999999999876 999999998642 1222
Q ss_pred HhHhc---CCCcccccCChHHHHHHHhhcCCC----C----cCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRAC---MPWLAVPYSDLETKKALNRKFDIE----G----IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~----~----~P~~~lid~~~~~G~i~~~~ 133 (399)
+..+. ....+..++|. ...+++.|++. + .|..+|||+ +|+|+...
T Consensus 78 ~~i~~~~~~~~~fpil~D~--~~~ia~~yg~~~~~~~~~~~~r~~fiID~---~G~I~~~~ 133 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADP--DREVAKLLGMIDPDAGSTLTVRAVFIIDP---DKKIRLIL 133 (203)
T ss_pred hhHHHhcCCCCceeEEECc--hHHHHHHcCCccccCCCCceeeEEEEECC---CCeEEEEE
Confidence 22221 22211122343 38899999985 2 357999999 99998664
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-14 Score=111.49 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=63.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+|+|||+||++|+.+.|.|.++.+++.+. +.++-|++|.. .+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~----------v~f~kVDvD~~-----------------------~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF----------AVIYLVDIDEV-----------------------PD 59 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc----------eEEEEEECCCC-----------------------HH
Confidence 3578999999999999999999999999998643 67788887755 78
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 60 la~~~~V~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 60 FNKMYELYDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred HHHHcCCCCCCEEEEE-ECCEEEEEE
Confidence 9999999999999999 899999875
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-14 Score=119.78 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=99.6
Q ss_pred hhcCCCCccc-CCC---CCceeeccc-cCCcEEEEEEe-cCCChhhhhh-HHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 015833 173 LTNHDRGYLL-GHP---PDEKVPVSS-LVGKTVGLYFS-ARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDF-EVVF 244 (399)
Q Consensus 173 ~g~~~p~f~l-~~~---g~~~~~l~~-~~gk~vll~F~-a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~~~-~vv~ 244 (399)
+|..+|+|++ +.+ |+ .+++++ ++||+++|+|| +.|||.|..+ ++.|.+.+++|.+. +. .|++
T Consensus 1 vG~~aPdF~l~~~~~~~g~-~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---------g~~~V~~ 70 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPN-PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---------GVDEVIC 70 (155)
T ss_pred CCCcCCCeEeeeeccCCCc-eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---------CCCEEEE
Confidence 4788999999 664 88 999999 58988777777 6799999999 99999999999876 78 6999
Q ss_pred EecCCCHHHHHHHHhcCCC-cccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEeccc
Q 015833 245 VSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 302 (399)
||.| +....+++.++++. ..+|++.|.+.++++.||+. ..+.+|||| +|+|++...
T Consensus 71 iS~D-~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 71 VSVN-DPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred EECC-CHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 9999 55667778887775 48999999999999999982 146789999 699997753
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-14 Score=122.29 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=88.2
Q ss_pred cccccccCCeEEecC-----CC-----CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEE-----
Q 015833 6 WYVQQLRRRMTSTKE-----IG-----EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEV----- 70 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~-----~G-----~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i----- 70 (399)
+.+|+..|..++.|. +| +.+++++++||+++|+|||+||++|+.++|.|.++ ++.+ +.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccc
Confidence 456788888877664 33 46677889999999999999999999999999988 3333 777
Q ss_pred -EEEecCCChHHHHHhHh----c----CCCcccccCChHHHHHHHhhcCCCCcCeE-EEEcCCCCCCCeeeccc
Q 015833 71 -VFVSSDEDLNAFNNYRA----C----MPWLAVPYSDLETKKALNRKFDIEGIPCL-VVLQPYDDKDDATLHDG 134 (399)
Q Consensus 71 -i~Vs~D~~~~~~~~~~~----~----~~~~~~~~~d~~~~~~l~~~~~v~~~P~~-~lid~~~~~G~i~~~~~ 134 (399)
+.||.|++......|.+ + .+|..+.. |. ...+...|++.++|+. ++||+ +|+++....
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll-D~--~g~v~~~~gv~~~P~T~fVIDk---~GkVv~~~~ 164 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL-DD--KGAVKNAWQLNSEDSAIIVLDK---TGKVKFVKE 164 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEE-CC--cchHHHhcCCCCCCceEEEECC---CCcEEEEEe
Confidence 89999876555444433 2 33433333 43 3678889999999988 89999 999997643
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-14 Score=115.15 Aligned_cols=72 Identities=25% Similarity=0.532 Sum_probs=65.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+.+|+|+|||+||+||+.+.|.|+++..+|.++ +++.-|++|.. .++
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~----------~k~~kvdtD~~-----------------------~el 107 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK----------FKLYKVDTDEH-----------------------PEL 107 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe----------EEEEEEccccc-----------------------cch
Confidence 478999999999999999999999999999765 88888888865 789
Q ss_pred HHhCCCCccceEEEECCCCcEEeccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
+..|+|.++||+++| ++|+.+.+..
T Consensus 108 a~~Y~I~avPtvlvf-knGe~~d~~v 132 (150)
T KOG0910|consen 108 AEDYEISAVPTVLVF-KNGEKVDRFV 132 (150)
T ss_pred HhhcceeeeeEEEEE-ECCEEeeeec
Confidence 999999999999999 8999997743
|
|
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=110.24 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=61.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+|||+||++|+.+.|.+.++++++++. .+.++.|++| + .+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~---------~~~~~~vd~d-~-----------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD---------LLHFATAEAD-T-----------------------ID 62 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC---------cEEEEEEeCC-C-----------------------HH
Confidence 3789999999999999999999999999988643 4677777777 4 45
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|+++||++++ ++|+.+.+.
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 87 (102)
T cd02948 63 TLKRYRGKCEPTFLFY-KNGELVAVI 87 (102)
T ss_pred HHHHcCCCcCcEEEEE-ECCEEEEEE
Confidence 7899999999999999 799988774
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=124.74 Aligned_cols=121 Identities=15% Similarity=0.197 Sum_probs=91.7
Q ss_pred ccccccccCCeEEecCCCCEEeccc-cCCCEEE-EEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSD-LEGKVTA-LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN-- 80 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~-~~gk~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~-- 80 (399)
...+|..+|+|++++..|+ +++++ ++||+++ ++||++||++|.++++.|++++++|++.+ ++|++||+|....
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~ 84 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHI 84 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHH
Confidence 3457999999999999996 67776 5999655 57789999999999999999999999876 9999999996542
Q ss_pred HHHHhH-hcC--CCcccccCChHHHHHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYR-ACM--PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~-~~~--~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+|.+.. +.. +..+..++|. ...+++.||+. ..|.++|||+ +|+|.+..
T Consensus 85 aw~~~~~~~~g~~i~fPllsD~--~~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~ 142 (222)
T PRK13189 85 KWVEWIKEKLGVEIEFPIIADD--RGEIAKKLGMISPGKGTNTVRAVFIIDP---KGIIRAIL 142 (222)
T ss_pred HHHHhHHHhcCcCcceeEEEcC--ccHHHHHhCCCccccCCCceeEEEEECC---CCeEEEEE
Confidence 233322 211 2111122343 37899999985 4699999999 99998664
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-14 Score=121.79 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=75.8
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
...|+|++. +|+.+++++++ +|+||++|||+|+.++|.|+++++++ + ++|++|++|...+ .
T Consensus 53 ~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~--------~ 113 (181)
T PRK13728 53 PAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD--------T 113 (181)
T ss_pred CCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC--------C
Confidence 356788884 99999999998 77799999999999999999999997 3 8999999986632 1
Q ss_pred CCcccccCChHHHHHHHhhcCC--CCcCeEEEEcCCCCCCCeee
Q 015833 90 PWLAVPYSDLETKKALNRKFDI--EGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 90 ~~~~~~~~d~~~~~~l~~~~~v--~~~P~~~lid~~~~~G~i~~ 131 (399)
. +|..-.+....+.+.|++ .++|+++|||+ +|+++.
T Consensus 114 ~---fPv~~dd~~~~~~~~~g~~~~~iPttfLId~---~G~i~~ 151 (181)
T PRK13728 114 A---FPEALPAPPDVMQTFFPNIPVATPTTFLVNV---NTLEAL 151 (181)
T ss_pred C---CceEecCchhHHHHHhCCCCCCCCeEEEEeC---CCcEEE
Confidence 1 221110112567788995 69999999999 999864
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=117.69 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=59.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++.+|+|||+||++|++++|.|+++++++ ++.|++|++|.... ..+|...+.....
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~------------~~~Vi~Vs~d~~~~-----------~~fp~~~~~~~~~ 106 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF------------GLPVYAFSLDGQGL-----------TGFPDPLPATPEV 106 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc------------CCcEEEEEeCCCcc-----------cccccccCCchHH
Confidence 345699999999999999999999999876 36799999985431 1234333322333
Q ss_pred -HHhC---CCCccceEEEECCCCcEEe
Q 015833 277 -TKYF---DVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 277 -~~~~---~v~~~P~~~lid~~G~i~~ 299 (399)
...| ++.++|+++|||++|+++.
T Consensus 107 ~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 107 MQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred HHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 3455 8899999999999988643
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=109.07 Aligned_cols=72 Identities=24% Similarity=0.450 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+|||+||++|+.+.|.|.++++++.+. +.++.|++|+. .+++++|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~------------------------~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV------------------------PDFNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 4789999999999999999999999999998654 67888877644 78999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeecc
Q 015833 111 IEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
|.++||++++. +|+.+...
T Consensus 66 V~~iPTf~~fk----~G~~v~~~ 84 (114)
T cd02954 66 LYDPPTVMFFF----RNKHMKID 84 (114)
T ss_pred CCCCCEEEEEE----CCEEEEEE
Confidence 99999999998 88888664
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-14 Score=117.65 Aligned_cols=89 Identities=16% Similarity=0.294 Sum_probs=72.6
Q ss_pred EEecCCCCEEecccc--CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcc
Q 015833 16 TSTKEIGEEVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLA 93 (399)
Q Consensus 16 ~l~d~~G~~v~l~~~--~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~ 93 (399)
+|++++++..++++. +||+++|+|||+||++|+.++|.|.++++.+++. +.++.|++|.+.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~-------------- 64 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPK-------------- 64 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcc--------------
Confidence 455666666666653 7899999999999999999999999999998653 778888776431
Q ss_pred cccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 94 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 94 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
...+.++|+|.++|+++++++ +|+++..
T Consensus 65 --------~~~~~~~~~V~~iPt~v~~~~---~G~~v~~ 92 (142)
T cd02950 65 --------WLPEIDRYRVDGIPHFVFLDR---EGNEEGQ 92 (142)
T ss_pred --------cHHHHHHcCCCCCCEEEEECC---CCCEEEE
Confidence 146778999999999999998 9998865
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=109.15 Aligned_cols=73 Identities=16% Similarity=0.402 Sum_probs=63.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.|++++|+||++||++|+.+.|.+.++.+++++. ++.++.|++|.+ ..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~~ 70 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL---------GVGIATVNAGHE-----------------------RR 70 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc---------CceEEEEecccc-----------------------HH
Confidence 5789999999999999999999999999999753 577787777744 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+++.+.
T Consensus 71 l~~~~~V~~~Pt~~i~-~~g~~~~~~ 95 (111)
T cd02963 71 LARKLGAHSVPAIVGI-INGQVTFYH 95 (111)
T ss_pred HHHHcCCccCCEEEEE-ECCEEEEEe
Confidence 8999999999999999 699888773
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-13 Score=108.00 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=63.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+|||+||++|+.+.|.+.++.+++.. ...++.|++|.+.. | ...
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~----------~~~~~~vdvd~~~~------------------d-~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI----------KKPILTLNLDAEDV------------------D-REK 63 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC----------CceEEEEECCcccc------------------c-cHH
Confidence 468999999999999999999999999877532 35688888885420 0 257
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 64 l~~~~~I~~iPT~i~f-k~G~~v~~~ 88 (103)
T PHA02278 64 AVKLFDIMSTPVLIGY-KDGQLVKKY 88 (103)
T ss_pred HHHHCCCccccEEEEE-ECCEEEEEE
Confidence 8999999999999999 899999874
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=108.49 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=62.0
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
+.+||+|+|+|||+||++|+.++|.|+++++++ . ++.++.|+.|.+.+ ...++++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~--~v~~~~vd~d~~~~---------------------~~~l~~~ 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--N--DVVFLLVNGDENDS---------------------TMELCRR 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--C--CCEEEEEECCCChH---------------------HHHHHHH
Confidence 346899999999999999999999999999998 2 37888888765411 1678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++|+++++ + +|+++..
T Consensus 67 ~~V~~~Pt~~~~-~---~G~~v~~ 86 (103)
T cd02985 67 EKIIEVPHFLFY-K---DGEKIHE 86 (103)
T ss_pred cCCCcCCEEEEE-e---CCeEEEE
Confidence 999999998888 5 8887754
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=129.88 Aligned_cols=68 Identities=22% Similarity=0.473 Sum_probs=58.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+|||+||++|+.+.|.+.++++.+.+.+.++.++.|+.+.. .+++++|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE------------------------KDLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc------------------------HHHHHhCC
Confidence 578999999999999999999999999999987655678887755432 78899999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++..
T Consensus 73 i~~~Pt~~~~~~ 84 (462)
T TIGR01130 73 VSGYPTLKIFRN 84 (462)
T ss_pred CccccEEEEEeC
Confidence 999999999973
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=107.25 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=57.9
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
++++||+|+|.|||+||++|+.+.|.|++++++++ ++.++.|..+..
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----------~~~~~~vd~~~~---------------------- 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----------QIRHLAIEESSI---------------------- 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----------cCceEEEECCCC----------------------
Confidence 34679999999999999999999999999999885 355666654411
Q ss_pred hHHHHHhCCCCccceEEEECCCCcE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
...+++.|+|.++||+++++ +|.+
T Consensus 61 ~~~l~~~~~V~~~PT~~lf~-~g~~ 84 (100)
T cd02999 61 KPSLLSRYGVVGFPTILLFN-STPR 84 (100)
T ss_pred CHHHHHhcCCeecCEEEEEc-CCce
Confidence 26889999999999999995 5543
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=115.12 Aligned_cols=120 Identities=20% Similarity=0.386 Sum_probs=95.8
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHHHHH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAFNN 84 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~---~~~~~~~ 84 (399)
....|+|+|.|.+|+++++++++||+++|+|..+.|| .|...+..|+++.+++.+.+.++++++||+|. +.+.+++
T Consensus 29 ~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~ 108 (174)
T PF02630_consen 29 PRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKK 108 (174)
T ss_dssp SCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHH
T ss_pred CccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHH
Confidence 3467899999999999999999999999999999999 99999999999999999877789999999985 3567788
Q ss_pred hHhcCC--CcccccCChHHHHHHHhhcCC----------------CCcCeEEEEcCCCCCCCeeec
Q 015833 85 YRACMP--WLAVPYSDLETKKALNRKFDI----------------EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 85 ~~~~~~--~~~~~~~d~~~~~~l~~~~~v----------------~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.+.++ |..+.+ +.....++.+.|++ .+...++|||+ +|+++..
T Consensus 109 Y~~~~~~~~~~ltg-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp---~G~i~~~ 170 (174)
T PF02630_consen 109 YAKKFGPDFIGLTG-SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDP---DGRIRAI 170 (174)
T ss_dssp HHHCHTTTCEEEEE-EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-T---TSEEEEE
T ss_pred HHHhcCCCcceeEe-CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcC---CCcEEEE
Confidence 888543 555544 33334677777765 25678999999 9998754
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=115.21 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=69.0
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHH
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAF 82 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~~~~ 82 (399)
...++|+++|.+|+.++|++++||++||.|||+||++|. +++.|++++++|++.| ++|++|+.+ .+.++.
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHH
Confidence 357899999999999999999999999999999999996 6999999999999877 999999985 356778
Q ss_pred HHhHh-cCC
Q 015833 83 NNYRA-CMP 90 (399)
Q Consensus 83 ~~~~~-~~~ 90 (399)
.++.+ +++
T Consensus 80 ~~f~~~~~g 88 (183)
T PRK10606 80 KTYCRTTWG 88 (183)
T ss_pred HHHHHHccC
Confidence 88886 454
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-13 Score=103.68 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=61.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+|++++|+||++||++|+.+.|.+.++++.+.+ .+.++.|++|.. ..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG----------QFVLAKVNCDAQ-----------------------PQ 57 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC----------cEEEEEEeccCC-----------------------HH
Confidence 478999999999999999999999999998864 366777776644 68
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|++++++ +|+++.+.
T Consensus 58 l~~~~~i~~~Pt~~~~~-~g~~~~~~ 82 (96)
T cd02956 58 IAQQFGVQALPTVYLFA-AGQPVDGF 82 (96)
T ss_pred HHHHcCCCCCCEEEEEe-CCEEeeee
Confidence 99999999999999995 89887653
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=106.23 Aligned_cols=87 Identities=28% Similarity=0.468 Sum_probs=65.8
Q ss_pred CC-cEEEEEEecCCChhhhhhHHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 196 VG-KTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 196 ~g-k~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
.| |+++|+||++||++|+.+.+.+. .+.+.+.+ ++.++.|++|.+.... . ++-...
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~d~~~~~~-~---------~~~~~~ 71 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA----------HFVVVYINIDGDKEVT-D---------FDGEAL 71 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh----------heEEEEEEccCCceee-c---------cCCCCc
Confidence 47 89999999999999999999875 45555543 4788888887553211 1 111122
Q ss_pred hhHHHHHhCCCCccceEEEECCC-CcEEeccc
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQG 302 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~ 302 (399)
....+++.|+|.++|+++++|++ |+++.+..
T Consensus 72 ~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~ 103 (125)
T cd02951 72 SEKELARKYRVRFTPTVIFLDPEGGKEIARLP 103 (125)
T ss_pred cHHHHHHHcCCccccEEEEEcCCCCceeEEec
Confidence 45789999999999999999999 89988743
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=104.37 Aligned_cols=69 Identities=32% Similarity=0.576 Sum_probs=61.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|.++|+|+|+||++|+.+.|.+.++..+|. ++.++.|++|.. .++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-----------~v~Flkvdvde~-----------------------~~~ 66 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-----------DVVFLKVDVDEL-----------------------EEV 66 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCC-----------CCEEEEEecccC-----------------------HhH
Confidence 5899999999999999999999999999986 356777777752 789
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|+++||++++ ++|+.+.+
T Consensus 67 ~~~~~V~~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 67 AKEFNVKAMPTFVFY-KGGEEVDE 89 (106)
T ss_pred HHhcCceEeeEEEEE-ECCEEEEE
Confidence 999999999999999 89988877
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=104.07 Aligned_cols=68 Identities=16% Similarity=0.342 Sum_probs=56.7
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
++++||+++|+|||+||++|+.++|.|.++++.+++ +.++.|+.+. ....+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-----------------------~~~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-----------------------IKPSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-----------------------CCHHHHH
Confidence 457899999999999999999999999999999852 5666664431 1167889
Q ss_pred hcCCCCcCeEEEEcC
Q 015833 108 KFDIEGIPCLVVLQP 122 (399)
Q Consensus 108 ~~~v~~~P~~~lid~ 122 (399)
+|+|.++||++++++
T Consensus 67 ~~~V~~~PT~~lf~~ 81 (100)
T cd02999 67 RYGVVGFPTILLFNS 81 (100)
T ss_pred hcCCeecCEEEEEcC
Confidence 999999999999984
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=119.66 Aligned_cols=72 Identities=28% Similarity=0.495 Sum_probs=65.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+.++|||+||+|||++|++++|.|+++..+|+++ +.++.|++|.+ ..
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~----------f~LakvN~D~~-----------------------p~ 88 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK----------FKLAKVNCDAE-----------------------PM 88 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc----------eEEEEecCCcc-----------------------hh
Confidence 3469999999999999999999999999999875 88888888866 78
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++..|||+++|++|+| ++|+.|.-.
T Consensus 89 vAaqfgiqsIPtV~af-~dGqpVdgF 113 (304)
T COG3118 89 VAAQFGVQSIPTVYAF-KDGQPVDGF 113 (304)
T ss_pred HHHHhCcCcCCeEEEe-eCCcCcccc
Confidence 9999999999999999 999999764
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=103.91 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=61.8
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
..+++++|+||++||++|+.+.|.+.++++++++ .+.++.|++|.. .
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~----------~~~~~~vd~~~~-----------------------~ 62 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG----------VIRIGAVNCGDD-----------------------R 62 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC----------ceEEEEEeCCcc-----------------------H
Confidence 3468999999999999999999999999999864 377888887754 6
Q ss_pred HHHHhCCCCccceEEEECCCCcEEec
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.+++.|+|+++||++++ ++|+.+.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 63 MLCRSQGVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred HHHHHcCCCccCEEEEE-cCCCCccc
Confidence 78999999999999999 78886655
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=102.91 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+|||+||++|+.+.|.+.++++++... ..++.|++|.+.. | ..+++++|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~-----------------d---~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV-----------------D---REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc-----------------c---cHHHHHHCC
Confidence 6889999999999999999999999998875332 5678888774411 1 167899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++||++++. +|+.+.+
T Consensus 70 I~~iPT~i~fk----~G~~v~~ 87 (103)
T PHA02278 70 IMSTPVLIGYK----DGQLVKK 87 (103)
T ss_pred CccccEEEEEE----CCEEEEE
Confidence 99999999998 7877755
|
|
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-12 Score=101.53 Aligned_cols=71 Identities=23% Similarity=0.514 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|+++++++.+ ++.++.|++|.. ..+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 67 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PGT 67 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------hhH
Confidence 67899999999999999999999999998864 478888888755 567
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|++.++|+++++ ++|+++.+.
T Consensus 68 ~~~~~v~~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 68 APKYGIRGIPTLLLF-KNGEVAATK 91 (109)
T ss_pred HHhCCCCcCCEEEEE-eCCeEEEEe
Confidence 889999999999999 799988764
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-12 Score=119.14 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=69.5
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
...++++.|+++||+||++||++|+.++|.|+++++++ +++|++|++|.... ..+|.
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y------------g~~Vi~VsvD~~~~-----------~~fp~ 214 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY------------GIEVLPVSVDGGPL-----------PGFPN 214 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc------------CcEEEEEeCCCCcc-----------ccCCc
Confidence 35677889999999999999999999999999998886 37899999996532 12444
Q ss_pred CCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 269 GDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
.. .+..+++.|||.++|+++|+|++|+.+
T Consensus 215 ~~-~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 215 AR-PDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cc-CCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 42 345688999999999999999865444
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-12 Score=107.31 Aligned_cols=71 Identities=21% Similarity=0.478 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.++||+|+|||+||+||+.+.|.|+++..++.+. +.+..|++|+. .+++.+|+
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~------------------------~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH------------------------PELAEDYE 112 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc------------------------cchHhhcc
Confidence 4689999999999999999999999999999765 89998877644 78899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|..+.+
T Consensus 113 I~avPtvlvfk----nGe~~d~ 130 (150)
T KOG0910|consen 113 ISAVPTVLVFK----NGEKVDR 130 (150)
T ss_pred eeeeeEEEEEE----CCEEeee
Confidence 99999999998 7776633
|
|
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=103.08 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=59.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|.|||+||++|+.+.|.++++++++++. +.++.|++|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~----------v~~~~Vd~d~~-----------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ----------VLFVAINCWWP-----------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------------------hH
Confidence 4589999999999999999999999999998643 67777877755 56
Q ss_pred HH-HhCCCCccceEEEECCCCcEEec
Q 015833 276 LT-KYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~-~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++ +.|+|+++||++++ ++|+...+
T Consensus 75 l~~~~~~I~~~PTl~lf-~~g~~~~~ 99 (113)
T cd03006 75 KCRKQKHFFYFPVIHLY-YRSRGPIE 99 (113)
T ss_pred HHHHhcCCcccCEEEEE-ECCccceE
Confidence 77 68999999999999 78875433
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.5e-12 Score=108.35 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=91.7
Q ss_pred cccccCCeEEecCC---CCEEeccc-cCCCEEEEEEe-cCCCcccHhh-HHHHHHHHHHHhcCCCcE-EEEEEecCCChH
Q 015833 8 VQQLRRRMTSTKEI---GEEVKVSD-LEGKVTALYFS-ANWYPPCGNF-TGVLVDVYEELRNNGSDF-EVVFVSSDEDLN 80 (399)
Q Consensus 8 ~~~~~p~f~l~d~~---G~~v~l~~-~~gk~vlv~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~ii~Vs~D~~~~ 80 (399)
+|..+|+|+|++.+ |+.++|++ ++||+++|+|| +.|||.|..+ ++.|++.+++|.+.| . +|++||.|...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~- 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPF- 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHH-
Confidence 47889999999986 99999999 58887766666 9999999999 999999999999876 7 59999998654
Q ss_pred HHHHhHhcCCC--cccccCChHHHHHHHhhcCCC------C-----cCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRACMPW--LAVPYSDLETKKALNRKFDIE------G-----IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~d~~~~~~l~~~~~v~------~-----~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+++.++... .....+|. ..++++.||+. + ...+++|| +|+|++..
T Consensus 78 ~~~~~~~~~~~~~~f~lLsD~--~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId----~g~I~~~~ 137 (155)
T cd03013 78 VMKAWGKALGAKDKIRFLADG--NGEFTKALGLTLDLSAAGGGIRSKRYALIVD----DGKVKYLF 137 (155)
T ss_pred HHHHHHHhhCCCCcEEEEECC--CHHHHHHcCCCccccccCCcceeeeEEEEEC----CCEEEEEE
Confidence 56777776654 12233454 38999999983 1 35678887 78887654
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-12 Score=102.78 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=62.3
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
..+|++++|+|||+||++|+.+.|.+.++++++++.+ +.++.|+.|.. ..++++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~------------------------~~l~~~ 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE------------------------RRLARK 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc------------------------HHHHHH
Confidence 3478999999999999999999999999999997643 77888866533 678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++|+++++. +|+.+..
T Consensus 75 ~~V~~~Pt~~i~~----~g~~~~~ 94 (111)
T cd02963 75 LGAHSVPAIVGII----NGQVTFY 94 (111)
T ss_pred cCCccCCEEEEEE----CCEEEEE
Confidence 9999999999996 7776644
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-12 Score=101.05 Aligned_cols=71 Identities=11% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+|||+||++|+.++|.|.++++.+++. .+.++.|+.| . .+++++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~------------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-T------------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-C------------------------HHHHHHcC
Confidence 5889999999999999999999999999998754 3677777554 2 56789999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++|+++++. +|+.+.+
T Consensus 69 v~~~Pt~~~~~----~g~~~~~ 86 (102)
T cd02948 69 GKCEPTFLFYK----NGELVAV 86 (102)
T ss_pred CCcCcEEEEEE----CCEEEEE
Confidence 99999988886 7877644
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=101.47 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=59.6
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
.++++++|+||++||++|+.+.|.+.++++++++. +.+..|+.|.. ..++++|
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~------------------------~~~~~~~ 68 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD------------------------RMLCRSQ 68 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc------------------------HHHHHHc
Confidence 45789999999999999999999999999998643 88888877533 6788999
Q ss_pred CCCCcCeEEEEcCCCCCCCee
Q 015833 110 DIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~ 130 (399)
+|.++|+++++. +|+.+
T Consensus 69 ~v~~~Pt~~~~~----~g~~~ 85 (101)
T cd03003 69 GVNSYPSLYVFP----SGMNP 85 (101)
T ss_pred CCCccCEEEEEc----CCCCc
Confidence 999999999995 66543
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-12 Score=98.37 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+.|.. ..++++|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ------------------------PQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999998643 77787866533 78899999
Q ss_pred CCCcCeEEEEcCCCCCCCeee
Q 015833 111 IEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~ 131 (399)
|.++|++++++ +|+.+.
T Consensus 64 i~~~Pt~~~~~----~g~~~~ 80 (96)
T cd02956 64 VQALPTVYLFA----AGQPVD 80 (96)
T ss_pred CCCCCEEEEEe----CCEEee
Confidence 99999999997 776653
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-12 Score=105.78 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=64.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.++++.+++.+. ++.++.|++|.. .+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~---------~v~f~~VDvd~~-----------------------~~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN---------NLKFGKIDIGRF-----------------------PN 93 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CeEEEEEECCCC-----------------------HH
Confidence 3578999999999999999999999999988643 588999988866 56
Q ss_pred HHHhCCCCc------cceEEEECCCCcEEecccc
Q 015833 276 LTKYFDVQG------IPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 276 ~~~~~~v~~------~P~~~lid~~G~i~~~~~~ 303 (399)
+++.|+|.+ +||++++ ++|+.+.+..+
T Consensus 94 la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 94 VAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred HHHHcCceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 788888877 9999999 79999987655
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=97.32 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=56.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|.||++||++|+.+.|.|+++++++++. +.++.+..++++.. ..
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-------GSPVRVGKLDATAY-----------------------SS 63 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-------CCcEEEEEEECccC-----------------------Hh
Confidence 3578999999999999999999999999998754 22456666655533 57
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i 297 (399)
+++.|+|.++|+++++ ++|.+
T Consensus 64 ~~~~~~I~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 64 IASEFGVRGYPTIKLL-KGDLA 84 (104)
T ss_pred HHhhcCCccccEEEEE-cCCCc
Confidence 8899999999999999 45543
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.1e-12 Score=99.57 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=61.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
.||+++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.|+++.+.. .
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~~-------------------~ 60 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK----------DVVLLRADWTKNDP-------------------E 60 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC----------CeEEEEEecCCCCH-------------------H
Confidence 478999999999999999999887 567766653 47788887764321 1
Q ss_pred hHHHHHhCCCCccceEEEECC-CCcEEecc
Q 015833 273 IKELTKYFDVQGIPCLVIIGP-EGKTVTKQ 301 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~ 301 (399)
...+++.|++.++|+++++++ +|+++.+.
T Consensus 61 ~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 61 ITALLKRFGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCCCccc
Confidence 367899999999999999988 89887664
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-12 Score=108.57 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=62.1
Q ss_pred CCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChH
Q 015833 21 IGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE 100 (399)
Q Consensus 21 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~ 100 (399)
.|+++++++ +.+|+|||+||++|++++|.|+++++++ + +.|++|+.|.... ..++ ..+.. .
T Consensus 43 ~G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~~~------~~fp---~~~~~-~ 103 (153)
T TIGR02738 43 QGRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQGL------TGFP---DPLPA-T 103 (153)
T ss_pred cchhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCCcc------cccc---cccCC-c
Confidence 355566554 4599999999999999999999999887 2 7789999886531 1122 11211 1
Q ss_pred HHHHHHhhc---CCCCcCeEEEEcCCCCCCCeee
Q 015833 101 TKKALNRKF---DIEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 101 ~~~~l~~~~---~v~~~P~~~lid~~~~~G~i~~ 131 (399)
. ..+.+.| ++.++|+++|||+ +|.++.
T Consensus 104 ~-~~~~~~~~~~~v~~iPTt~LID~---~G~~i~ 133 (153)
T TIGR02738 104 P-EVMQTFFPNPRPVVTPATFLVNV---NTRKAY 133 (153)
T ss_pred h-HHHHHHhccCCCCCCCeEEEEeC---CCCEEE
Confidence 1 2233455 8899999999999 987643
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=97.51 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=57.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+|+ ++|+|||+||++|+.+.|.+.++++.++.. ++.+..|+++.+ ..
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~-----------------------~~ 62 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL---------GINVAKVDVTQE-----------------------PG 62 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC---------CeEEEEEEccCC-----------------------Hh
Confidence 455 689999999999999999999999876532 577777776644 56
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+++.|+|.++||++++ ++|++.
T Consensus 63 ~~~~~~i~~~Pt~~~~-~~g~~~ 84 (101)
T cd02994 63 LSGRFFVTALPTIYHA-KDGVFR 84 (101)
T ss_pred HHHHcCCcccCEEEEe-CCCCEE
Confidence 8899999999999998 889863
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=103.22 Aligned_cols=72 Identities=28% Similarity=0.535 Sum_probs=61.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.. ..
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG----------KVRFVKVNTEAE-----------------------RE 97 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEeCCCC-----------------------HH
Confidence 368999999999999999999999999988753 466777766544 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 98 l~~~~~V~~~Ptlii~-~~G~~v~~~ 122 (139)
T PRK10996 98 LSARFRIRSIPTIMIF-KNGQVVDML 122 (139)
T ss_pred HHHhcCCCccCEEEEE-ECCEEEEEE
Confidence 8999999999999999 689998773
|
|
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=99.16 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=59.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|.||++||++|+.+.|.+.++.+++.+ .+.++.|++|.. ..+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 65 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKG----------KVKVGSVDCQKY-----------------------ESL 65 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECCch-----------------------HHH
Confidence 56999999999999999999999999998853 367777776643 678
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|+++||++++.++|+.+.+
T Consensus 66 ~~~~~i~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 66 CQQANIRAYPTIRLYPGNASKYHS 89 (104)
T ss_pred HHHcCCCcccEEEEEcCCCCCceE
Confidence 999999999999999665466655
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=100.24 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH-hhc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN-RKF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~~~ 109 (399)
++++++|+|||+||++|+.++|.+.++++++++. +.++.|+.|.. ..++ ++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~------------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP------------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------hHHHHHhc
Confidence 5789999999999999999999999999999653 78888876543 5667 589
Q ss_pred CCCCcCeEEEEc
Q 015833 110 DIEGIPCLVVLQ 121 (399)
Q Consensus 110 ~v~~~P~~~lid 121 (399)
+|.++||++++.
T Consensus 81 ~I~~~PTl~lf~ 92 (113)
T cd03006 81 HFFYFPVIHLYY 92 (113)
T ss_pred CCcccCEEEEEE
Confidence 999999999995
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-12 Score=101.13 Aligned_cols=96 Identities=26% Similarity=0.442 Sum_probs=65.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+||+++++||++||++|+.+.+.+.+..+-.... ..++.++.++++.............+. +.......+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYL-------KDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE-------HCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh-------hcCeEEEEEecCCcccccccccccccc---hhhhHHHHH
Confidence 4799999999999999999988888654421111 125788888888665544444442221 222224578
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|+++||++++|++|+++.+.
T Consensus 74 l~~~~~v~gtPt~~~~d~~G~~v~~~ 99 (112)
T PF13098_consen 74 LAQRYGVNGTPTIVFLDKDGKIVYRI 99 (112)
T ss_dssp HHHHTT--SSSEEEECTTTSCEEEEE
T ss_pred HHHHcCCCccCEEEEEcCCCCEEEEe
Confidence 99999999999999999999988763
|
... |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=106.71 Aligned_cols=121 Identities=21% Similarity=0.361 Sum_probs=95.1
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
.....++|++ +.+|+ .+++++++||+++|+|..+.|| .|...+..|.++.+++.+. +.++++++||+|.
T Consensus 28 ~~~~~~~f~L~d~~G~-~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-------~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGK-TVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-------GKDVQFVFISVDPE 99 (174)
T ss_dssp TSCSSST-EEEETTSS-EEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-------TTTEEEEEEESSTT
T ss_pred CCccCCCcEEEcCCCC-EecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-------cCceEEEEEEeCCC
Confidence 4456789999 99999 9999999999999999999997 7999999999999998865 4589999999995
Q ss_pred --CHHHHHHHHhcCC--CcccccCCchhHHHHHhCCCC----------------ccceEEEECCCCcEEecc
Q 015833 250 --DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ----------------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 --~~~~~~~~~~~~~--~~~~p~~~d~~~~~~~~~~v~----------------~~P~~~lid~~G~i~~~~ 301 (399)
+++..++|.+..+ |..+....+...++++.|++. ....++|||++|+++...
T Consensus 100 ~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 100 RDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp TC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 4667888888543 555544445667888888863 223689999999998763
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=100.06 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+|.|||+||++|+.+.|.|.++++++++. +.|+-|++|.. ++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~----------~~~~kVDVDe~-----------------------~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF----------AVIYLVDITEV-----------------------PD 68 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc----------eEEEEEECCCC-----------------------HH
Confidence 3579999999999999999999999999998753 67788888855 78
Q ss_pred HHHhCCCCccceEE-EECCCCc-EEecc
Q 015833 276 LTKYFDVQGIPCLV-IIGPEGK-TVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~-lid~~G~-i~~~~ 301 (399)
+++.|+|++.|+++ ++ ++|+ .+.+.
T Consensus 69 la~~y~I~~~~t~~~ff-k~g~~~vd~~ 95 (142)
T PLN00410 69 FNTMYELYDPCTVMFFF-RNKHIMIDLG 95 (142)
T ss_pred HHHHcCccCCCcEEEEE-ECCeEEEEEe
Confidence 99999999777666 77 8888 66664
|
|
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=98.07 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=61.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+||++||++|+.+.|.|.++.+++. ++.++-|++|.. ..+
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----------~i~f~~Vd~~~~-----------------------~~l 67 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----------ETKFIKVNAEKA-----------------------PFL 67 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----------CCEEEEEEcccC-----------------------HHH
Confidence 5789999999999999999999999998874 467777777654 679
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||++++ ++|+.+.+.
T Consensus 68 ~~~~~v~~vPt~l~f-k~G~~v~~~ 91 (113)
T cd02989 68 VEKLNIKVLPTVILF-KNGKTVDRI 91 (113)
T ss_pred HHHCCCccCCEEEEE-ECCEEEEEE
Confidence 999999999999999 899988774
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-11 Score=96.86 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=58.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+|||+||++|+.+.|.+.++++++++... ....+.++.|++|.+ ..+
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~----~~~~~~~~~vd~d~~-----------------------~~l 70 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFP----DAGKVVWGKVDCDKE-----------------------SDI 70 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccC----CCCcEEEEEEECCCC-----------------------HHH
Confidence 57899999999999999999999999998864300 001356666666644 679
Q ss_pred HHhCCCCccceEEEECCCCcEE
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++.|+|+++|+++++ ++|++.
T Consensus 71 ~~~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 71 ADRYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred HHhCCCCcCCEEEEE-eCCcCc
Confidence 999999999999999 788843
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=98.41 Aligned_cols=72 Identities=15% Similarity=0.379 Sum_probs=59.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+|++++|.||++||++|+.+.|.+.++++++++. ++.++.|.+|.+. ..
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~---------~~~~~~vd~d~~~----------------------~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS---------NVKVAKFNADGEQ----------------------RE 68 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECCccc----------------------hh
Confidence 4689999999999999999999999999998753 6888888887531 44
Q ss_pred HHH-hCCCCccceEEEECCCCcEE
Q 015833 276 LTK-YFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~-~~~v~~~P~~~lid~~G~i~ 298 (399)
+++ .|+++++||+++++++++..
T Consensus 69 ~~~~~~~v~~~Pti~~f~~~~~~~ 92 (109)
T cd02993 69 FAKEELQLKSFPTILFFPKNSRQP 92 (109)
T ss_pred hHHhhcCCCcCCEEEEEcCCCCCc
Confidence 565 59999999999998776543
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=97.99 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=60.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|+|+|.|+|+||++|+.+.|.|.+++++|++. +.++.|++|.. ++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~----------~~f~kVDVDev-----------------------~d 59 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM----------ASIYLVDVDKV-----------------------PV 59 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc----------eEEEEEecccc-----------------------HH
Confidence 4789999999999999999999999999998642 56777777744 78
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.|+|.++||++++ ++|+-+..
T Consensus 60 va~~y~I~amPtfvff-kngkh~~~ 83 (114)
T cd02986 60 YTQYFDISYIPSTIFF-FNGQHMKV 83 (114)
T ss_pred HHHhcCceeCcEEEEE-ECCcEEEE
Confidence 9999999999999999 77765544
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.1e-12 Score=102.01 Aligned_cols=76 Identities=22% Similarity=0.479 Sum_probs=57.7
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+..++|+|+|+|||+||++|+.+.|.+.+..+.... +..++.|.+|.+.
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~--------------------- 63 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL----------SHNFVMVNLEDDE--------------------- 63 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh----------cCcEEEEEecCCC---------------------
Confidence 344579999999999999999999999887665432 2346667776542
Q ss_pred hHHHHHhCCCCc--cceEEEECCCCcEEec
Q 015833 273 IKELTKYFDVQG--IPCLVIIGPEGKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~~v~~--~P~~~lid~~G~i~~~ 300 (399)
....+.|++.+ +|+++++|++|+++.+
T Consensus 64 -~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 64 -EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred -CchhhhcccCCCccceEEEECCCCCCchh
Confidence 22345677765 9999999999999875
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-12 Score=123.48 Aligned_cols=133 Identities=24% Similarity=0.378 Sum_probs=90.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|.||++||++|..+.|.+.++.+.+++. +....+|++. +..+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~------------~~~~~vd~~~---------------------~~~~ 93 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK------------VKIGAVDCDE---------------------HKDL 93 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCc------------eEEEEeCchh---------------------hHHH
Confidence 468999999999999999999999999888743 4445556554 3899
Q ss_pred HHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCCc-ccccccccc-----eee
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS-EFHIGHRHE-----LNL 350 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-----~~~ 350 (399)
++.|+|+++||+.++.++.+++...+. ...+...+.+.+.++......... +.......- ...
T Consensus 94 ~~~y~i~gfPtl~~f~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 162 (383)
T KOG0191|consen 94 CEKYGIQGFPTLKVFRPGKKPIDYSGP-----------RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSD 162 (383)
T ss_pred HHhcCCccCcEEEEEcCCCceeeccCc-----------ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccC
Confidence 999999999999999666455555432 123334444555554444433333 222222111 122
Q ss_pred eecCCCCCCeecCCCCCCCCcee
Q 015833 351 VSEGTGGGPFICCDCDEQGSGWA 373 (399)
Q Consensus 351 ~~~~~~~~~~~c~~C~~~~~~w~ 373 (399)
..|+..+.+|||+||+++.|.|.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~ 185 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWE 185 (383)
T ss_pred cceEEEEeccccHHhhhcChHHH
Confidence 33667778999999999999984
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=96.88 Aligned_cols=68 Identities=28% Similarity=0.478 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++++++.+ .+.++.|++|.+. ...+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~----------~~~~~~v~~~~~~---------------------~~~~ 66 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG----------LVQVAAVDCDEDK---------------------NKPL 66 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC----------CceEEEEecCccc---------------------cHHH
Confidence 67899999999999999999999999988864 3788888887532 2678
Q ss_pred HHhCCCCccceEEEECCCC
Q 015833 277 TKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G 295 (399)
++.|+|.++|+++++++++
T Consensus 67 ~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 67 CGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred HHHcCCCcCCEEEEEeCCC
Confidence 9999999999999997766
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-11 Score=94.58 Aligned_cols=71 Identities=18% Similarity=0.402 Sum_probs=58.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.|..+.. .++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~----------~i~~~~vd~~~~-----------------------~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP----------SVLFLSIEAEEL-----------------------PEI 60 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------ceEEEEEccccC-----------------------HHH
Confidence 68999999999999999999999999988632 455655544422 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|++.++|+++++ ++|+++.+.
T Consensus 61 ~~~~~i~~~Pt~~~~-~~g~~~~~~ 84 (97)
T cd02984 61 SEKFEITAVPTFVFF-RNGTIVDRV 84 (97)
T ss_pred HHhcCCccccEEEEE-ECCEEEEEE
Confidence 999999999999999 689988774
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=101.85 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.++++++++.+. ++.++.|++|+. .+++++|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~------------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRF------------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCC------------------------HHHHHHcC
Confidence 4679999999999999999999999999998654 389999987655 56777778
Q ss_pred CCC------cCeEEEEcCCCCCCCeeeccch
Q 015833 111 IEG------IPCLVVLQPYDDKDDATLHDGV 135 (399)
Q Consensus 111 v~~------~P~~~lid~~~~~G~i~~~~~~ 135 (399)
|.+ +||++++. +|+.+.+...
T Consensus 100 V~~~~~v~~~PT~ilf~----~Gk~v~r~~G 126 (152)
T cd02962 100 VSTSPLSKQLPTIILFQ----GGKEVARRPY 126 (152)
T ss_pred ceecCCcCCCCEEEEEE----CCEEEEEEec
Confidence 776 99999997 7887766443
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-11 Score=95.70 Aligned_cols=71 Identities=25% Similarity=0.523 Sum_probs=58.6
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 278 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~ 278 (399)
+++|+||++||++|+.+.|.+.++++++++. ..++.++.|+++.. ..+++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~~~~ 67 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQH-----------------------RELCS 67 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCCC-----------------------hhhHh
Confidence 4999999999999999999999999998752 12467777766543 57889
Q ss_pred hCCCCccceEEEECCCCcEEec
Q 015833 279 YFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 279 ~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.|+|.++|+++++ ++|+.+.+
T Consensus 68 ~~~v~~~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 68 EFQVRGYPTLLLF-KDGEKVDK 88 (102)
T ss_pred hcCCCcCCEEEEE-eCCCeeeE
Confidence 9999999999999 78876654
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-11 Score=96.01 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=56.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.+.++++++++. +.++.|+.|.. ..++++|+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY------------------------ESLCQQAN 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch------------------------HHHHHHcC
Confidence 4679999999999999999999999999998543 77887866422 77899999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++..
T Consensus 71 i~~~Pt~~~~~~ 82 (104)
T cd03004 71 IRAYPTIRLYPG 82 (104)
T ss_pred CCcccEEEEEcC
Confidence 999999999985
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-11 Score=95.99 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=59.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+|+|.|+|+||++|+.+.|.|.++++++++. +.++.|++|+. .++++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev------------------------~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV------------------------PVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc------------------------HHHHHhcC
Confidence 6899999999999999999999999999999542 67777766633 88999999
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|...|+++++. +|+-.
T Consensus 66 I~amPtfvffk----ngkh~ 81 (114)
T cd02986 66 ISYIPSTIFFF----NGQHM 81 (114)
T ss_pred ceeCcEEEEEE----CCcEE
Confidence 99999999887 55544
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.1e-11 Score=93.06 Aligned_cols=70 Identities=34% Similarity=0.710 Sum_probs=60.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++.+++.+ ++.++.|+++.. ..+
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~l 63 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD----------NVKFAKVDCDEN-----------------------KEL 63 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTS-----------------------HHH
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc----------ccccchhhhhcc-----------------------chh
Confidence 68999999999999999999999999998864 366777766644 789
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|.++|+++++ ++|+.+.+
T Consensus 64 ~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 64 CKKYGVKSVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp HHHTTCSSSSEEEEE-ETTEEEEE
T ss_pred hhccCCCCCCEEEEE-ECCcEEEE
Confidence 999999999999999 77877765
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=97.12 Aligned_cols=71 Identities=8% Similarity=0.157 Sum_probs=59.3
Q ss_pred cEEEEEEecCCChh--hh--hhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 198 KTVGLYFSARWCIP--CE--KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 198 k~vll~F~a~wC~~--C~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.++|++||++||++ |+ ...|.+.+++.++-.. .++.++.|++|.+
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--------~~v~~~kVD~d~~----------------------- 76 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--------KGIGFGLVDSKKD----------------------- 76 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--------CCCEEEEEeCCCC-----------------------
Confidence 58999999999987 99 7888889988887322 2578888888855
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEec
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.++++.|+|+++||++|+ ++|+++..
T Consensus 77 ~~La~~~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 77 AKVAKKLGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred HHHHHHcCCccccEEEEE-ECCEEEEe
Confidence 789999999999999999 89998764
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-11 Score=93.09 Aligned_cols=72 Identities=17% Similarity=0.382 Sum_probs=61.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+++||++||+.|+.+.|.+.++.+++.+ ++.++.|+.|.+ .+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~id~d~~-----------------------~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG----------AVHFVEIDIDED-----------------------QE 58 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC----------ceEEEEEECCCC-----------------------HH
Confidence 368999999999999999999999999888753 467777777644 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.+++.++|+++++ ++|+++.+.
T Consensus 59 l~~~~~v~~vPt~~i~-~~g~~v~~~ 83 (97)
T cd02949 59 IAEAAGIMGTPTVQFF-KDKELVKEI 83 (97)
T ss_pred HHHHCCCeeccEEEEE-ECCeEEEEE
Confidence 8899999999999999 589988663
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-11 Score=97.81 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=58.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+||++||++|+.+.|.|+++++++. ++.++.|+++ . . .+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----------~v~f~~vd~~--~---------------------~-~l 68 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----------ETKFVKINAE--K---------------------A-FL 68 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----------CcEEEEEEch--h---------------------h-HH
Confidence 4789999999999999999999999998874 3455555443 2 2 68
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
++.|+|.++||++++ ++|+.+.+..+
T Consensus 69 ~~~~~i~~~Pt~~~f-~~G~~v~~~~G 94 (113)
T cd02957 69 VNYLDIKVLPTLLVY-KNGELIDNIVG 94 (113)
T ss_pred HHhcCCCcCCEEEEE-ECCEEEEEEec
Confidence 899999999999999 89999877533
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=96.60 Aligned_cols=70 Identities=19% Similarity=0.415 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+|+|+||+||+.+.|.+.+++.+|.+ +.++.|++|+ ...+++.++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde------------------------~~~~~~~~~ 71 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE------------------------LEEVAKEFN 71 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc------------------------CHhHHHhcC
Confidence 469999999999999999999999999999854 6777787763 288999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|..+||++++. +|+.+..
T Consensus 72 V~~~PTf~f~k----~g~~~~~ 89 (106)
T KOG0907|consen 72 VKAMPTFVFYK----GGEEVDE 89 (106)
T ss_pred ceEeeEEEEEE----CCEEEEE
Confidence 99999999997 6655543
|
|
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-11 Score=94.66 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=56.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.++|.|.++++.+++.+.++.+..++.+.. ..++++|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY------------------------SSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC------------------------HhHHhhcC
Confidence 467999999999999999999999999999976543466666655322 57788999
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
|.++|++++++
T Consensus 70 I~~~Pt~~l~~ 80 (104)
T cd03000 70 VRGYPTIKLLK 80 (104)
T ss_pred CccccEEEEEc
Confidence 99999999996
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-11 Score=95.61 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=63.6
Q ss_pred CCcEEEEEEecCC--ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 196 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 196 ~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.|.+++|.||++| ||+|..+.|.|.++.++|.+. +.++-|++|.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~----------v~f~kVdid~~----------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR----------FRAAVVGRADE----------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc----------EEEEEEECCCC-----------------------
Confidence 3567999999997 999999999999999998754 67777777755
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+++..|+|+++||++++ ++|+++.+..
T Consensus 73 ~~la~~f~V~sIPTli~f-kdGk~v~~~~ 100 (111)
T cd02965 73 QALAARFGVLRTPALLFF-RDGRYVGVLA 100 (111)
T ss_pred HHHHHHcCCCcCCEEEEE-ECCEEEEEEe
Confidence 689999999999999999 8999998743
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=94.31 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=58.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++++++++. ...+.+..|+++.+. ...+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~~ 70 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-------RPVVRVAAVDCADEE---------------------NVAL 70 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-------CCceEEEEEeccchh---------------------hHHH
Confidence 379999999999999999999999999998753 123666666654332 3678
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+++++|+++++ ++|.....
T Consensus 71 ~~~~~i~~~Pt~~lf-~~~~~~~~ 93 (114)
T cd02992 71 CRDFGVTGYPTLRYF-PPFSKEAT 93 (114)
T ss_pred HHhCCCCCCCEEEEE-CCCCccCC
Confidence 999999999999999 55554444
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-11 Score=94.73 Aligned_cols=71 Identities=11% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCC---CcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
.+++++|+|||+||++|+.+.|.+.++++.+++.. .++.++.|+.|.. ..+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~------------------------~~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE------------------------SDIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC------------------------HHHHH
Confidence 46899999999999999999999999999986431 1367777766533 77899
Q ss_pred hcCCCCcCeEEEEcCCCCCCCe
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i 129 (399)
+|+|+++|+++++. +|++
T Consensus 73 ~~~v~~~Ptl~~~~----~g~~ 90 (108)
T cd02996 73 RYRINKYPTLKLFR----NGMM 90 (108)
T ss_pred hCCCCcCCEEEEEe----CCcC
Confidence 99999999999996 6763
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-11 Score=93.15 Aligned_cols=72 Identities=26% Similarity=0.497 Sum_probs=58.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|.||++||++|+.+.+.+.++.+.++.. .++.++.+.+|.. ..
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~-----------------------~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--------PDIVLAKVDATAE-----------------------KD 60 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--------CceEEEEEEccch-----------------------HH
Confidence 5789999999999999999999999999888643 1355655555433 78
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+++.|++.++|+++++++++.+.
T Consensus 61 ~~~~~~i~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 61 LASRFGVSGFPTIKFFPKGKKPV 83 (102)
T ss_pred HHHhCCCCcCCEEEEecCCCcce
Confidence 89999999999999998777643
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=105.04 Aligned_cols=71 Identities=25% Similarity=0.476 Sum_probs=58.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.++++++++++. +.+..|+++.. ..+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~----------v~~~~VD~~~~-----------------------~~l 98 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ----------VNVADLDATRA-----------------------LNL 98 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC----------eEEEEecCccc-----------------------HHH
Confidence 478999999999999999999999999988643 55655554433 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||+++++ +|+++.+.
T Consensus 99 ~~~~~I~~~PTl~~f~-~G~~v~~~ 122 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFD-KGKMYQYE 122 (224)
T ss_pred HHHcCCCcCCEEEEEE-CCEEEEee
Confidence 9999999999999995 78887654
|
|
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-11 Score=93.88 Aligned_cols=69 Identities=19% Similarity=0.338 Sum_probs=56.4
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
++|+ ++|+|||+||++|+.+.|.+.++++.++.. ++.+..|+.|.. ..++++|
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~------------------------~~~~~~~ 67 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQE------------------------PGLSGRF 67 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCC------------------------HhHHHHc
Confidence 4666 679999999999999999999999987543 377787765433 5688999
Q ss_pred CCCCcCeEEEEcCCCCCCCe
Q 015833 110 DIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i 129 (399)
+|.++|+++++. +|++
T Consensus 68 ~i~~~Pt~~~~~----~g~~ 83 (101)
T cd02994 68 FVTALPTIYHAK----DGVF 83 (101)
T ss_pred CCcccCEEEEeC----CCCE
Confidence 999999999984 7764
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-11 Score=94.54 Aligned_cols=69 Identities=16% Similarity=0.405 Sum_probs=57.2
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
.++|+||++||++|+.++|.++++++++++..+++.++.|+.+.. ..++++|+|.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH------------------------RELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC------------------------hhhHhhcCCCc
Confidence 599999999999999999999999999986333588887765432 57788999999
Q ss_pred cCeEEEEcCCCCCCCee
Q 015833 114 IPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 114 ~P~~~lid~~~~~G~i~ 130 (399)
+|+++++. +|+.+
T Consensus 74 ~Pt~~~~~----~g~~~ 86 (102)
T cd03005 74 YPTLLLFK----DGEKV 86 (102)
T ss_pred CCEEEEEe----CCCee
Confidence 99999995 66544
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.2e-11 Score=97.31 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=64.0
Q ss_pred CC-CEEEEEEecCCCcccHhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 31 EG-KVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 31 ~g-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+| |+++|+||++||++|+.+.|.+. .+.+.+++ ++.++.|++|.+.... .+ .. .......++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~~---------~~-~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-DF---------DG-EALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-cc---------CC-CCccHHHHH
Confidence 67 99999999999999999999885 56666653 3888999887653211 11 10 011237899
Q ss_pred hhcCCCCcCeEEEEcCCCCC-CCeeec
Q 015833 107 RKFDIEGIPCLVVLQPYDDK-DDATLH 132 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~-G~i~~~ 132 (399)
++|+|.++|+++++++ + |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~---~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDP---EGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcC---CCCceeEE
Confidence 9999999999999998 8 787755
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=101.56 Aligned_cols=115 Identities=17% Similarity=0.363 Sum_probs=93.0
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHh-cCCCcEEEEEEecCCC---hHHHHHhHh-
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELR-NNGSDFEVVFVSSDED---LNAFNNYRA- 87 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~ii~Vs~D~~---~~~~~~~~~- 87 (399)
+|+|.|.+|+.+++.+++||+++|+|..++|| .|...+..|.++.+++. ..+.++++++|++|.. .+.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 79999999999999999999999999999999 99999999999999998 6667899999999843 456667766
Q ss_pred cC--CCcccccCChHHHHHHHhhcCCC---------------CcCeEEEEcCCCCCCCeeec
Q 015833 88 CM--PWLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 88 ~~--~~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lid~~~~~G~i~~~ 132 (399)
.. .|..+.. +.+...++++.|+|. +...++++++ +|++...
T Consensus 129 ~~~~~~~~ltg-~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~---~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTG-TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDA---DGRFLGT 186 (207)
T ss_pred cCCCCeeeeeC-CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECC---CCeEEEE
Confidence 22 2555554 244457777777664 4557788888 8888755
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-11 Score=113.20 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=69.4
Q ss_pred CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 23 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 23 ~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
+...+++++|+++||+||++||++|+.++|.|++++++++ +.|++|++|..... . +|..+. .
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~------~-----fp~~~~--d 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLP------G-----FPNARP--D 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccc------c-----CCcccC--C
Confidence 3467888999999999999999999999999999999972 88999999876421 1 221122 2
Q ss_pred HHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 103 KALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 103 ~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
..+.++|+|.++|+++|+++ +|..+
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~---~~~~v 243 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADP---DPNQF 243 (271)
T ss_pred HHHHHHcCCCcCCeEEEEEC---CCCEE
Confidence 56789999999999999997 66544
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=110.87 Aligned_cols=179 Identities=16% Similarity=0.224 Sum_probs=107.9
Q ss_pred CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC--CcCeEEEE
Q 015833 43 WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE--GIPCLVVL 120 (399)
Q Consensus 43 wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~--~~P~~~li 120 (399)
....|......+.++++++++. .+.+..+ |......+++.+++. .+|.++++
T Consensus 246 ~~~~~~~~~~~~~~~a~~~~~~--~i~f~~~------------------------d~~~~~~~~~~~~~~~~~~P~~vi~ 299 (462)
T TIGR01130 246 SLDPFEELRNRFLEAAKKFRGK--FVNFAVA------------------------DEEDFGRELEYFGLKAEKFPAVAIQ 299 (462)
T ss_pred CchHHHHHHHHHHHHHHHCCCC--eEEEEEe------------------------cHHHhHHHHHHcCCCccCCceEEEE
Confidence 4455788888899998888641 2555544 333336788889987 69999999
Q ss_pred cCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCc---cc-CCCCCceeeccc-c
Q 015833 121 QPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGY---LL-GHPPDEKVPVSS-L 195 (399)
Q Consensus 121 d~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f---~l-~~~g~~~~~l~~-~ 195 (399)
+. ++..... .. ....+.+.+.++............. ...+.|.- .+ ...|. .+.-.- -
T Consensus 300 ~~---~~~~~y~-----~~-----~~~~~~~~i~~fi~~~~~g~~~~~~---~se~~p~~~~~~v~~l~~~-~f~~~v~~ 362 (462)
T TIGR01130 300 DL---EGNKKYP-----MD-----QEEFSSENLEAFVKDFLDGKLKPYL---KSEPIPEDDEGPVKVLVGK-NFDEIVLD 362 (462)
T ss_pred eC---CcccccC-----CC-----cCCCCHHHHHHHHHHHhcCCCCeee---ccCCCCccCCCccEEeeCc-CHHHHhcc
Confidence 97 6521111 00 0124455555544333221111111 11122221 11 22333 222111 1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.++.++|+||++||++|+.+.|.+.++++.+++. ..++.++.|+++.+ .
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~i~~~~id~~~n------------------------~ 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA-------ESDVVIAKMDATAN------------------------D 411 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC-------CCcEEEEEEECCCC------------------------c
Confidence 3789999999999999999999999999998752 12467777766533 1
Q ss_pred HHHhCCCCccceEEEECCCCc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~ 296 (399)
+.. +++.++|+++++.++++
T Consensus 412 ~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 412 VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred cCC-CCccccCEEEEEeCCCC
Confidence 223 89999999999955544
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=90.28 Aligned_cols=70 Identities=26% Similarity=0.566 Sum_probs=59.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.+.+.++.+++.+ ++.++.|.++.+ ..+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG----------KVKFVKLNVDEN-----------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHH
Confidence 46899999999999999999999999888753 377888877654 578
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|++.++|+++++ ++|+++.+
T Consensus 61 ~~~~~v~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 61 AAKYGIRSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred HHHcCCCcCCEEEEE-eCCcEeee
Confidence 899999999999999 78887765
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=94.40 Aligned_cols=67 Identities=15% Similarity=0.425 Sum_probs=56.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh-hc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 109 (399)
.||+++|.||++||++|+.+.|.+.++++.+++.+ +.++.|+.|.+ ...+++ .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~-----------------------~~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGE-----------------------QREFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCcc-----------------------chhhHHhhc
Confidence 57999999999999999999999999999998543 88888877642 034554 59
Q ss_pred CCCCcCeEEEEcC
Q 015833 110 DIEGIPCLVVLQP 122 (399)
Q Consensus 110 ~v~~~P~~~lid~ 122 (399)
++.++|+++++++
T Consensus 75 ~v~~~Pti~~f~~ 87 (109)
T cd02993 75 QLKSFPTILFFPK 87 (109)
T ss_pred CCCcCCEEEEEcC
Confidence 9999999999986
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=97.75 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++|+|+|||+||+||+.+.|.|.++++++++. +.++.|++|+. ++++..|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~------------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV------------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999998654 77788877754 88999999
Q ss_pred CCCcCeEEEEcCCCCCCC
Q 015833 111 IEGIPCLVVLQPYDDKDD 128 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~ 128 (399)
|.+.|+++++-+ +|.
T Consensus 75 I~~~~t~~~ffk---~g~ 89 (142)
T PLN00410 75 LYDPCTVMFFFR---NKH 89 (142)
T ss_pred ccCCCcEEEEEE---CCe
Confidence 998887775555 776
|
|
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=95.06 Aligned_cols=122 Identities=18% Similarity=0.228 Sum_probs=97.5
Q ss_pred hcCCCCccc----CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 174 TNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 174 g~~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
..++|+|.- +..-+ .++|++++||+|++.||. .+...|..++-.+...+.+|++. +-+|+++|+|
T Consensus 7 ~~p~p~fk~~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---------n~eVig~S~D 76 (196)
T KOG0852|consen 7 FKPAPDFKGTAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---------NTEVLGISTD 76 (196)
T ss_pred CCCCCCcceeEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---------CCeEEEEecc
Confidence 345577753 55556 899999999999999994 58889999999999999999976 8999999999
Q ss_pred C--CHHHHHHHHhcCCC---cccccCCchhHHHHHhCCC----C--ccceEEEECCCCcEEecccchh
Q 015833 249 R--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDV----Q--GIPCLVIIGPEGKTVTKQGRNL 305 (399)
Q Consensus 249 ~--~~~~~~~~~~~~~~---~~~p~~~d~~~~~~~~~~v----~--~~P~~~lid~~G~i~~~~~~~~ 305 (399)
+ +.-+|.+.-++.+. +++|+..|.+.++++.||| . .+..++|||++|.++.....++
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDl 144 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDL 144 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeeccc
Confidence 6 34456655555444 5599999999999999998 3 4557999999999887544433
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=91.98 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+.. ..+
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~~ 63 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----------KMVFVKVDVDEL-----------------------SEV 63 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----------CcEEEEEECcch-----------------------HHH
Confidence 5789999999999999999999999888653 456666665532 678
Q ss_pred HHhCCCCccceEEEECCCCcEEeccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++.|++.++|+++++ ++|+++.+..
T Consensus 64 ~~~~~v~~~Pt~~~~-~~g~~~~~~~ 88 (98)
T PTZ00051 64 AEKENITSMPTFKVF-KNGSVVDTLL 88 (98)
T ss_pred HHHCCCceeeEEEEE-eCCeEEEEEe
Confidence 999999999999888 8999987743
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-11 Score=94.49 Aligned_cols=67 Identities=31% Similarity=0.506 Sum_probs=57.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.|++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+.|.+. ...++++|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~----------------------~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK----------------------NKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc----------------------cHHHHHHcC
Confidence 4789999999999999999999999999998643 788888776421 267889999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++++
T Consensus 72 i~~~Pt~~~~~~ 83 (109)
T cd03002 72 VQGFPTLKVFRP 83 (109)
T ss_pred CCcCCEEEEEeC
Confidence 999999999996
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=91.89 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=60.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.+.++.+.+.+. ..+.++.|.++.+. ...
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~~---------------------~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--------GKGVLAAVDCTKPE---------------------HDA 66 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--------CceEEEEEECCCCc---------------------cHH
Confidence 3568999999999999999999999999988743 24556666655421 267
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+++++|+++++ ++|+++.+.
T Consensus 67 ~~~~~~i~~~Pt~~~~-~~g~~~~~~ 91 (104)
T cd02997 67 LKEEYNVKGFPTFKYF-ENGKFVEKY 91 (104)
T ss_pred HHHhCCCccccEEEEE-eCCCeeEEe
Confidence 8999999999999888 688876553
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=93.73 Aligned_cols=71 Identities=21% Similarity=0.477 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|+++++++.+. +.++.|+.|.. ..++++|+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC------------------------hhHHHhCC
Confidence 3789999999999999999999999999998653 78888877643 56678899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+..+|+++++. +|+++..
T Consensus 73 v~~~Pt~~~~~----~G~~~~~ 90 (109)
T PRK09381 73 IRGIPTLLLFK----NGEVAAT 90 (109)
T ss_pred CCcCCEEEEEe----CCeEEEE
Confidence 99999999995 7887654
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=91.82 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=59.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
+||+++|+||++||++|+.+.+.+ .++++.+++ ++.++.|+.+.+ +. ....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~-------------------~~-~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKN-------------------DP-EITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCC-------------------CH-HHHHHHH
Confidence 589999999999999999999887 577777765 388888877543 11 1278899
Q ss_pred hcCCCCcCeEEEEcCCCCCCCee
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
+|++.++|+++++++ .+|+.+
T Consensus 67 ~~~i~~~Pti~~~~~--~~g~~~ 87 (104)
T cd02953 67 RFGVFGPPTYLFYGP--GGEPEP 87 (104)
T ss_pred HcCCCCCCEEEEECC--CCCCCC
Confidence 999999999999984 245554
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-11 Score=108.32 Aligned_cols=71 Identities=20% Similarity=0.406 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.-+||+|+||+|||++|+.++|.|.++..+++.. |.+..|++|.. ..++.+||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~------------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE------------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc------------------------hhHHHHhC
Confidence 4579999999999999999999999999999876 99999988755 88999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++|++|++- +|+.+..
T Consensus 95 iqsIPtV~af~----dGqpVdg 112 (304)
T COG3118 95 VQSIPTVYAFK----DGQPVDG 112 (304)
T ss_pred cCcCCeEEEee----CCcCccc
Confidence 99999999997 8887743
|
|
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=97.08 Aligned_cols=71 Identities=24% Similarity=0.505 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.++++++.+. +.++.|+.|.. ..++++|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE------------------------RELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC------------------------HHHHHhcC
Confidence 5899999999999999999999999999987643 77777765432 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++..
T Consensus 104 V~~~Ptlii~~----~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIFK----NGQVVDM 121 (139)
T ss_pred CCccCEEEEEE----CCEEEEE
Confidence 99999999885 7887654
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-10 Score=99.40 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 112 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 112 (399)
..++++|||+||++|+.+.|.|.++++++. ++.++.|+. + |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~------------------------d--------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNL------------------------A--------DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEcc------------------------c--------cCcc
Confidence 467899999999999999999999999984 366666622 1 9999
Q ss_pred CcCeEEEEcCCCCCCCeeec
Q 015833 113 GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 113 ~~P~~~lid~~~~~G~i~~~ 132 (399)
++|+++++. +|+.+.+
T Consensus 62 ~vPtfv~~~----~g~~i~r 77 (204)
T PTZ00062 62 EYGVFEFYQ----NSQLINS 77 (204)
T ss_pred cceEEEEEE----CCEEEee
Confidence 999999997 7877765
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-10 Score=105.85 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCcEEEEEEec---CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 196 VGKTVGLYFSA---RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 196 ~gk~vll~F~a---~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
++...++.|++ +||++|+.+.|.++++.+++. ++++..+++|.+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----------~~~i~~v~vd~~~--------------------- 65 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----------KLKLEIYDFDTPE--------------------- 65 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----------CceEEEEecCCcc---------------------
Confidence 34445666777 999999999999999988874 3567777777543
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
..++++.|+|.++||++++ ++|+.+
T Consensus 66 ~~~l~~~~~V~~~Pt~~~f-~~g~~~ 90 (215)
T TIGR02187 66 DKEEAEKYGVERVPTTIIL-EEGKDG 90 (215)
T ss_pred cHHHHHHcCCCccCEEEEE-eCCeee
Confidence 3889999999999999999 567765
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-10 Score=91.32 Aligned_cols=69 Identities=25% Similarity=0.411 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.|.+.++++.+++....+.+..|+.+.+ ....++++|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE----------------------ENVALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch----------------------hhHHHHHhCCC
Confidence 47999999999999999999999999999976432466666644321 12678899999
Q ss_pred CCcCeEEEEcC
Q 015833 112 EGIPCLVVLQP 122 (399)
Q Consensus 112 ~~~P~~~lid~ 122 (399)
.++|+++++.+
T Consensus 77 ~~~Pt~~lf~~ 87 (114)
T cd02992 77 TGYPTLRYFPP 87 (114)
T ss_pred CCCCEEEEECC
Confidence 99999999985
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-10 Score=87.99 Aligned_cols=65 Identities=23% Similarity=0.455 Sum_probs=55.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++++++.+ .+.++.+.+|.. ..+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~id~~~~-----------------------~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG----------IVKVGAVDADVH-----------------------QSL 64 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC----------CceEEEEECcch-----------------------HHH
Confidence 46799999999999999999999999988864 367777776643 678
Q ss_pred HHhCCCCccceEEEECCC
Q 015833 277 TKYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~ 294 (399)
++.|+|+++|++++++++
T Consensus 65 ~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 65 AQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred HHHCCCCccCEEEEECCC
Confidence 999999999999999544
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-10 Score=88.47 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||+.|+.+.|.+.++++++.+. +.++.|+.|.. .++.++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~------------------------~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED------------------------QEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC------------------------HHHHHHCC
Confidence 5789999999999999999999999999998643 77787766533 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++..
T Consensus 65 v~~vPt~~i~~----~g~~v~~ 82 (97)
T cd02949 65 IMGTPTVQFFK----DKELVKE 82 (97)
T ss_pred CeeccEEEEEE----CCeEEEE
Confidence 99999999996 7777644
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-10 Score=90.28 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCC--CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 31 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 31 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
.|..++|+||++| ||+|+.+.|.|.++++++.+. +.++.|+.|.. .+++.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~------------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE------------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC------------------------HHHHHH
Confidence 5678899999997 999999999999999998754 77778876644 789999
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++||++++. +|+++..
T Consensus 79 f~V~sIPTli~fk----dGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFFR----DGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEEE----CCEEEEE
Confidence 9999999999998 7888765
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-10 Score=101.52 Aligned_cols=92 Identities=22% Similarity=0.395 Sum_probs=71.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
-+|.|+|+|+|+||+||+...|.+..+.++|++ ..++-|.+| + -+.
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-----------aVFlkVdVd--~---------------------c~~ 65 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-----------AVFLKVDVD--E---------------------CRG 65 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcc-----------cEEEEEeHH--H---------------------hhc
Confidence 368999999999999999999999999999963 345555554 2 267
Q ss_pred HHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCC
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 337 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~ 337 (399)
.+..+||+++||++++ .+|+-+.+ ..|+++ ..|+.++.+.+.....
T Consensus 66 taa~~gV~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 66 TAATNGVNAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYASTSAA 111 (288)
T ss_pred hhhhcCcccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhccCcc
Confidence 7888999999999999 88877766 445444 6677777776654443
|
|
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-10 Score=90.78 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.|.++++++. ++.++.|+.|+. ..++++|+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~------------------------~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKA------------------------PFLVEKLN 72 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccC------------------------HHHHHHCC
Confidence 46899999999999999999999999998874 267777766533 77899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|..+|+++++. +|+.+.+
T Consensus 73 v~~vPt~l~fk----~G~~v~~ 90 (113)
T cd02989 73 IKVLPTVILFK----NGKTVDR 90 (113)
T ss_pred CccCCEEEEEE----CCEEEEE
Confidence 99999999998 7877754
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-10 Score=92.77 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=62.3
Q ss_pred CCcEEEEEEec-------CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 196 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 196 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
+|++|+|+||| +||++|+.+.|.+.++.+++++ ++.++.|.+|... .
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~----------~v~fv~Vdvd~~~----------------~ 73 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE----------DCVFIYCDVGDRP----------------Y 73 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC----------CCEEEEEEcCCcc----------------c
Confidence 47899999999 9999999999999999988863 3678888887542 1
Q ss_pred CCchhHHHHHhCCCC-ccceEEEECCCCcEEec
Q 015833 269 GDPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~-~~P~~~lid~~G~i~~~ 300 (399)
..+....+...|+|. ++||+++++..++++..
T Consensus 74 w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 74 WRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred ccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 112247888999998 99999999655555543
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=96.76 Aligned_cols=115 Identities=20% Similarity=0.381 Sum_probs=93.7
Q ss_pred Cccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEecCC---CHH
Q 015833 179 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDR---DQT 252 (399)
Q Consensus 179 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~vv~is~d~---~~~ 252 (399)
+|++ +.+|+ .+++.+++||+++|+|..+.|| .|...+..|.++.++.. .. ..++++++|++|. +++
T Consensus 49 ~f~l~d~~G~-~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~-------~~~v~vv~itvDPerDtp~ 120 (207)
T COG1999 49 DFELTDQDGK-PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE-------GDDVQVVFITVDPERDTPE 120 (207)
T ss_pred ceeeecCCCC-EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc-------CCCEEEEEEEECCCCCCHH
Confidence 7999 99999 9999999999999999999998 79999999999999887 33 5689999999985 456
Q ss_pred HHHHHHh-c--CCCcccccCCchhHHHHHhCCCCc---------------cceEEEECCCCcEEecc
Q 015833 253 SFESYFG-T--MPWLALPFGDPTIKELTKYFDVQG---------------IPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 253 ~~~~~~~-~--~~~~~~p~~~d~~~~~~~~~~v~~---------------~P~~~lid~~G~i~~~~ 301 (399)
..++|.. . -.|..+.-..+...++++.|+|.. ...++++|++|+++...
T Consensus 121 ~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~ 187 (207)
T COG1999 121 VLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTY 187 (207)
T ss_pred HHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEe
Confidence 6777777 2 125555555667788899888753 22579999999998774
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-10 Score=87.91 Aligned_cols=70 Identities=21% Similarity=0.436 Sum_probs=58.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.|.|.++++++. .++.++.|+.+. ..+++++|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~---~~i~~~~vd~~~------------------------~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF---PSVLFLSIEAEE------------------------LPEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC---CceEEEEEcccc------------------------CHHHHHhcCC
Confidence 6999999999999999999999999999972 247777774432 2678899999
Q ss_pred CCcCeEEEEcCCCCCCCeeec
Q 015833 112 EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++|+++++. +|+++..
T Consensus 67 ~~~Pt~~~~~----~g~~~~~ 83 (97)
T cd02984 67 TAVPTFVFFR----NGTIVDR 83 (97)
T ss_pred ccccEEEEEE----CCEEEEE
Confidence 9999999996 7877654
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-10 Score=91.21 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=65.0
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
-+||+++|.||.+|||+|+.+.+.+....+....-..++.++.++++...+.........+. .. -.....++.+.|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~~~~ 78 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KN-VRLSNKELAQRY 78 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SS-CHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hh-hhHHHHHHHHHc
Confidence 36899999999999999999999888654432221124888999887766544444443221 11 122347899999
Q ss_pred CCCCcCeEEEEcCCCCCCCeeec
Q 015833 110 DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++|+++++|+ +|+++..
T Consensus 79 ~v~gtPt~~~~d~---~G~~v~~ 98 (112)
T PF13098_consen 79 GVNGTPTIVFLDK---DGKIVYR 98 (112)
T ss_dssp T--SSSEEEECTT---TSCEEEE
T ss_pred CCCccCEEEEEcC---CCCEEEE
Confidence 9999999999998 9997754
|
... |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-10 Score=88.75 Aligned_cols=73 Identities=18% Similarity=0.389 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|.||++||++|+.+.|.++++++.+++.+ .+.++.|+.+.+ ....++++|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~----------------------~~~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKP----------------------EHDALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCC----------------------ccHHHHHhCC
Confidence 57799999999999999999999999999997532 366666655431 1267889999
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|.++|+++++. +|+++
T Consensus 73 i~~~Pt~~~~~----~g~~~ 88 (104)
T cd02997 73 VKGFPTFKYFE----NGKFV 88 (104)
T ss_pred CccccEEEEEe----CCCee
Confidence 99999988886 67654
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.3e-10 Score=96.14 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=96.5
Q ss_pred cccccccCCeEEecC-CCC---EEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--
Q 015833 6 WYVQQLRRRMTSTKE-IGE---EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-- 78 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~-~G~---~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~-- 78 (399)
..+|+.+|+|++... .|. +++++++.||+++++|| +..-+.|.++...+++.+++|++.| ++|++||+|..
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fs 80 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFS 80 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHH
Confidence 457999999999977 774 89999998899999999 8889999999999999999999987 99999999953
Q ss_pred hHHHHHhHhcCC-C--cccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 79 LNAFNNYRACMP-W--LAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 79 ~~~~~~~~~~~~-~--~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
..+|.+...+.. . ..+|. -.+...++++.||+. ..-.+++||+ +|.+.+.
T Consensus 81 H~aW~~~~~~~~gi~~i~~Pm-iaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp---~g~ir~~ 139 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPM-IADPKGEIARAYGVLHPEEGLALRGTFIIDP---DGVIRHI 139 (194)
T ss_pred HHHHHhcHHhcCCccceecce-EEcCchhHHHHcCCcccCCCcceeEEEEECC---CCeEEEE
Confidence 445555544333 2 22332 223348999999985 3568899999 9988755
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-10 Score=97.24 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=64.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+||++||++|+.+.|.|.+++++|. .+.++-|.+| . ..+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----------~vkF~kVd~d--~----------------------~~l 127 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----------AVKFCKIRAS--A----------------------TGA 127 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CeEEEEEecc--c----------------------hhh
Confidence 3599999999999999999999999998874 3555555544 2 257
Q ss_pred HHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHH
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 324 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 324 (399)
+..|+|.++||++++ ++|+++.+..+.. ..|.. .|+...++.+
T Consensus 128 ~~~f~v~~vPTllly-k~G~~v~~~vG~~--~~~g~--~f~~~~le~~ 170 (175)
T cd02987 128 SDEFDTDALPALLVY-KGGELIGNFVRVT--EDLGE--DFDAEDLESF 170 (175)
T ss_pred HHhCCCCCCCEEEEE-ECCEEEEEEechH--HhcCC--CCCHHHHHHH
Confidence 888999999999999 8999997754432 22222 3555555443
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-10 Score=88.22 Aligned_cols=70 Identities=26% Similarity=0.632 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|.++++.+.+ ++.++.|+.+.. ..++++|+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 68 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDEN------------------------KELCKKYG 68 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhcc------------------------chhhhccC
Confidence 379999999999999999999999999999876 388887765433 78999999
Q ss_pred CCCcCeEEEEcCCCCCCCeee
Q 015833 111 IEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~ 131 (399)
|.++|+++++. +|+...
T Consensus 69 v~~~Pt~~~~~----~g~~~~ 85 (103)
T PF00085_consen 69 VKSVPTIIFFK----NGKEVK 85 (103)
T ss_dssp CSSSSEEEEEE----TTEEEE
T ss_pred CCCCCEEEEEE----CCcEEE
Confidence 99999999998 666554
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-10 Score=88.67 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=59.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|.||++||++|+.+.|.+.+++++++.. .++.++.|+++.. ...+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~----------------------~~~~ 67 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE--------DDVVIAKVDADEA----------------------NKDL 67 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC--------CCEEEEEEECCCc----------------------chhh
Confidence 568999999999999999999999999988632 2466666666541 1678
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|.++|++++++++|+....
T Consensus 68 ~~~~~i~~~P~~~~~~~~~~~~~~ 91 (105)
T cd02998 68 AKKYGVSGFPTLKFFPKGSTEPVK 91 (105)
T ss_pred HHhCCCCCcCEEEEEeCCCCCccc
Confidence 999999999999999777654433
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-10 Score=92.55 Aligned_cols=76 Identities=21% Similarity=0.400 Sum_probs=55.4
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
+..++|+|+|+|||+||++|+.+.|.+.+..+..... ..++.|++|.+. ..+.+
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~-----------------------~~~~~ 68 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDE-----------------------EPKDE 68 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCC-----------------------Cchhh
Confidence 4457899999999999999999999999977765432 234445554331 11224
Q ss_pred hcCCCC--cCeEEEEcCCCCCCCeeec
Q 015833 108 KFDIEG--IPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 108 ~~~v~~--~P~~~lid~~~~~G~i~~~ 132 (399)
.|++.+ +|+++++++ +|+++.+
T Consensus 69 ~~~~~g~~vPt~~f~~~---~Gk~~~~ 92 (117)
T cd02959 69 EFSPDGGYIPRILFLDP---SGDVHPE 92 (117)
T ss_pred hcccCCCccceEEEECC---CCCCchh
Confidence 677765 999999999 9988754
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=87.58 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=56.7
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
-.+|+|+|+|+++||++|+.+.+.. .++.+.+.+ ++.+|.|..+...+..+.+
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~----------~fv~VkvD~~~~~~~~~~~-------------- 68 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE----------NFVPIKVDREERPDVDKIY-------------- 68 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC----------CEEEEEEeCCcCcHHHHHH--------------
Confidence 3579999999999999999887632 234444432 4666666655432211111
Q ss_pred hhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.......|++.++|+++++|++|++++..++
T Consensus 69 -~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 69 -MNAAQAMTGQGGWPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred -HHHHHHhcCCCCCCEEEEECCCCCEEeeeee
Confidence 1223336799999999999999999987643
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-10 Score=92.48 Aligned_cols=81 Identities=16% Similarity=0.391 Sum_probs=63.3
Q ss_pred cCCCEEEEEEec-------CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 30 LEGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 30 ~~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
.+|++++|+||| +||++|+.+.|.+.+++++++++ +.++.|++|+... | .+. .
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~----------w-----~d~--~ 78 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPY----------W-----RDP--N 78 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCccc----------c-----cCc--c
Confidence 358999999999 99999999999999999998633 7788888875421 0 011 2
Q ss_pred HHHHhhcCCC-CcCeEEEEcCCCCCCCeeecc
Q 015833 103 KALNRKFDIE-GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 103 ~~l~~~~~v~-~~P~~~lid~~~~~G~i~~~~ 133 (399)
..+...|+|. ++||+++++. .++++..+
T Consensus 79 ~~~~~~~~I~~~iPT~~~~~~---~~~l~~~~ 107 (119)
T cd02952 79 NPFRTDPKLTTGVPTLLRWKT---PQRLVEDE 107 (119)
T ss_pred hhhHhccCcccCCCEEEEEcC---Cceecchh
Confidence 6788899998 9999999986 55655443
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-10 Score=88.93 Aligned_cols=70 Identities=21% Similarity=0.408 Sum_probs=58.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|.||++||++|+.+.+.|+++++.++..+ ++.++.++.|. ...++++|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~------------------------~~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATA------------------------EKDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccc------------------------hHHHHHhCC
Confidence 78999999999999999999999999999987643 47777665432 278889999
Q ss_pred CCCcCeEEEEcCCCCCCC
Q 015833 111 IEGIPCLVVLQPYDDKDD 128 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~ 128 (399)
|.++|++++++. ++.
T Consensus 67 i~~~P~~~~~~~---~~~ 81 (102)
T TIGR01126 67 VSGFPTIKFFPK---GKK 81 (102)
T ss_pred CCcCCEEEEecC---CCc
Confidence 999999999997 554
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=105.40 Aligned_cols=90 Identities=27% Similarity=0.458 Sum_probs=63.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|-|||.||||||+||+++.|.+++|+++|++. -.||...+|.+.. +
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~----------~~vviAKmDaTaN----------------------d 430 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD----------ENVVIAKMDATAN----------------------D 430 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC----------CCcEEEEeccccc----------------------c
Confidence 3688999999999999999999999999999864 2466677776532 1
Q ss_pred HHHhCCCCccceEEEECCCC--cEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhc
Q 015833 276 LTKYFDVQGIPCLVIIGPEG--KTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 333 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G--~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 333 (399)
+ ....+.++||++++-.++ +++..+| .+.++.|.+.+.+...
T Consensus 431 ~-~~~~~~~fPTI~~~pag~k~~pv~y~g---------------~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 431 V-PSLKVDGFPTILFFPAGHKSNPVIYNG---------------DRTLEDLKKFIKKSAT 474 (493)
T ss_pred C-ccccccccceEEEecCCCCCCCcccCC---------------CcchHHHHhhhccCCC
Confidence 1 123567799999994333 2444433 3336777777765443
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.2e-10 Score=87.36 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=57.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|.++++.+. ++.++.|+.+. ...++++|+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~------------------------~~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDE------------------------LSEVAEKEN 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcc------------------------hHHHHHHCC
Confidence 47899999999999999999999999998753 26666665432 167889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++. +|+++..
T Consensus 69 v~~~Pt~~~~~----~g~~~~~ 86 (98)
T PTZ00051 69 ITSMPTFKVFK----NGSVVDT 86 (98)
T ss_pred CceeeEEEEEe----CCeEEEE
Confidence 99999988885 8888755
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.8e-10 Score=90.57 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCEEEEEEecCCCcc--cH--hhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 32 GKVTALYFSANWYPP--CG--NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 32 gk~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
..+++++||++||++ |+ .+.|.+.+++.++-..+ ++.++.|++|.. ..+++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~------------------------~~La~ 81 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD------------------------AKVAK 81 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC------------------------HHHHH
Confidence 459999999999987 99 77888999888873221 388888877644 88999
Q ss_pred hcCCCCcCeEEEEcCCCCCCCeee
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~~ 131 (399)
+|+|+++||++++. +|+++.
T Consensus 82 ~~~I~~iPTl~lfk----~G~~v~ 101 (120)
T cd03065 82 KLGLDEEDSIYVFK----DDEVIE 101 (120)
T ss_pred HcCCccccEEEEEE----CCEEEE
Confidence 99999999999997 787664
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.4e-10 Score=90.32 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=56.6
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.|.|+++++++.+ +.++.|+. +.. .++++|+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~------------------------~~~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINA------------------------EKA-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEc------------------------hhh-HHHHhcCC
Confidence 48999999999999999999999999999742 56666633 222 78899999
Q ss_pred CCcCeEEEEcCCCCCCCeeec
Q 015833 112 EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++|+++++. +|+.+.+
T Consensus 75 ~~~Pt~~~f~----~G~~v~~ 91 (113)
T cd02957 75 KVLPTLLVYK----NGELIDN 91 (113)
T ss_pred CcCCEEEEEE----CCEEEEE
Confidence 9999999998 7887755
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=89.18 Aligned_cols=79 Identities=18% Similarity=0.442 Sum_probs=57.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC-chhHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIKE 275 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~-d~~~~ 275 (399)
|+.++|+|+++|||+|+.+.|.|.++.++. +..+..|++|.+.. ..... +.-.+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~------------~~~~y~vdvd~~~~-------------~~~~~~~~~~~ 77 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT------------KAPIYYIDSENNGS-------------FEMSSLNDLTA 77 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc------------CCcEEEEECCCccC-------------cCcccHHHHHH
Confidence 567999999999999999999999998872 35699999985420 00000 01134
Q ss_pred HHHhC----CCCccceEEEECCCCcEEecc
Q 015833 276 LTKYF----DVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~----~v~~~P~~~lid~~G~i~~~~ 301 (399)
+.+.| ++.++||++++ ++|+.+.+.
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~ 106 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHI-TDGKQVSVR 106 (122)
T ss_pred HHHHcCCcccCCCCCEEEEE-eCCeEEEEE
Confidence 44554 46679999999 999999874
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-09 Score=94.08 Aligned_cols=126 Identities=22% Similarity=0.326 Sum_probs=98.3
Q ss_pred HhhhcCC--CCccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 171 NLLTNHD--RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 171 ~~~g~~~--p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
..+|.++ -+|+| +.+|+ .++-.++.||++|+||..+.|| .|..++..|.++.+++.++. +....-|+|+
T Consensus 111 ~~~gk~~iGGpF~L~d~~Gk-~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~------~~~~~PlFIs 183 (280)
T KOG2792|consen 111 RTAGKPAIGGPFSLVDHDGK-RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKP------GLPPVPLFIS 183 (280)
T ss_pred hhcCCCccCCceEEEecCCC-eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccC------CCCccceEEE
Confidence 3345444 46999 99999 9999999999999999999999 79999999999999887651 2223368999
Q ss_pred cCC---CHHHHHHHHhcCC--CcccccCCchhHHHHHhCCCCcc--c-------------eEEEECCCCcEEecccc
Q 015833 247 TDR---DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQGI--P-------------CLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 247 ~d~---~~~~~~~~~~~~~--~~~~p~~~d~~~~~~~~~~v~~~--P-------------~~~lid~~G~i~~~~~~ 303 (399)
+|. +.+.+++|+++.. .+.+.-..+....+++.|.|--- | .++||||+|+.+...|.
T Consensus 184 vDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 184 VDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred eCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 996 6778899998755 34455555567788999987211 2 47999999999988765
|
|
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.4e-10 Score=100.64 Aligned_cols=69 Identities=19% Similarity=0.348 Sum_probs=57.5
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+|||+||++|+.+.|.++++++++++. +.+..|+.+ ....++++|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~------------------------~~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDAT------------------------RALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCc------------------------ccHHHHHHcCC
Confidence 579999999999999999999999999998743 666666443 22678999999
Q ss_pred CCcCeEEEEcCCCCCCCeee
Q 015833 112 EGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~ 131 (399)
.++|++++++ +|+.+.
T Consensus 105 ~~~PTl~~f~----~G~~v~ 120 (224)
T PTZ00443 105 KGYPTLLLFD----KGKMYQ 120 (224)
T ss_pred CcCCEEEEEE----CCEEEE
Confidence 9999999998 676654
|
|
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-10 Score=91.82 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=94.1
Q ss_pred HHhhhcCCCCccc-CCCCCceeeccccCC-cEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 170 INLLTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 170 ~~~~g~~~p~f~l-~~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.-.+|+.+|||+| +.||+ .++|..+.| ++|+++|| +...|-|.++.-.+..-|++++.. +.+|+++|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~-sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---------~aeV~GlS 131 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGK-SISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---------GAEVIGLS 131 (211)
T ss_pred eeecCCcCCCcccccCCCC-eeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---------CceEEeec
Confidence 3347999999999 99999 999999998 48888888 457889999999999999999865 78999999
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccc-------eEEEECCCCc
Q 015833 247 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP-------CLVIIGPEGK 296 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P-------~~~lid~~G~ 296 (399)
.| +....++|..+.+ +.+.++.|...++.+.+|+...| ..+|++++|.
T Consensus 132 ~D-~s~sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 132 GD-DSASQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred cC-chHHHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 99 4455666665544 66677899999999999997655 5678877753
|
|
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-09 Score=85.94 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=90.9
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-----
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----- 249 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~----- 249 (399)
...+|++ +.+|+ .+++++++||++||.-.|+.|+.-. ....|+.||++|+++ |++|+++.++.
T Consensus 4 ~~yd~~~~~~~G~-~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~---------Gf~VLgFPcNQF~~QE 72 (162)
T COG0386 4 SIYDFSVKDIDGE-PVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK---------GFEVLGFPCNQFGGQE 72 (162)
T ss_pred ccccceeeccCCC-CccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC---------CcEEEeccccccccCC
Confidence 3467888 99999 9999999999999999999999877 455799999999987 99999999852
Q ss_pred --CHHHHHHHHhcCCCcccccCCc----------hhHHHHHhCC-------CCccceEEEECCCCcEEecccc
Q 015833 250 --DQTSFESYFGTMPWLALPFGDP----------TIKELTKYFD-------VQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 --~~~~~~~~~~~~~~~~~p~~~d----------~~~~~~~~~~-------v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+.++++++....-..+||+... .-+.|..... |..==+-||||++|+||.|.+.
T Consensus 73 Pg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p 145 (162)
T COG0386 73 PGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSP 145 (162)
T ss_pred CCCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCC
Confidence 6688999999777788888432 1122333221 1112267999999999999753
|
|
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=86.71 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=53.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
++.++|+||++||++|+.+.|.|+++.+.+ + .+++..|++|.. .++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~----------~i~~~~vd~d~~-----------------------~~l 67 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D----------KLKLEIYDFDED-----------------------KEK 67 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C----------ceEEEEEeCCcC-----------------------HHH
Confidence 345889999999999999999999998775 2 477888887754 678
Q ss_pred HHhCCCCccceEEEECC
Q 015833 277 TKYFDVQGIPCLVIIGP 293 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~ 293 (399)
++.|+|.++|++++++.
T Consensus 68 ~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 68 AEKYGVERVPTTIFLQD 84 (113)
T ss_pred HHHcCCCcCCEEEEEeC
Confidence 99999999999999954
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-10 Score=98.26 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=60.7
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
..++++|||+||++|+.+.|.|.++.++|. + +.++.+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-----------~--~~F~~V~~d--------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-----------S--LEFYVVNLA--------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-----------C--cEEEEEccc---------------------------
Confidence 458999999999999999999999999875 3 444444422
Q ss_pred HhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccC
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 335 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~ 335 (399)
|+|.++|+++++ ++|+++.+ ..|.++ .+|...+.......
T Consensus 58 --~~V~~vPtfv~~-~~g~~i~r-------~~G~~~--------~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 58 --DANNEYGVFEFY-QNSQLINS-------LEGCNT--------STLVSFIRGWAQKG 97 (204)
T ss_pred --cCcccceEEEEE-ECCEEEee-------eeCCCH--------HHHHHHHHHHcCCC
Confidence 789999999999 89999988 334333 56666666655543
|
|
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=94.43 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=92.7
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcC-CCcEEEEEEecCC---ChHHHHHh
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDE---DLNAFNNY 85 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~ii~Vs~D~---~~~~~~~~ 85 (399)
...+|+|.|.+|+.++-.++.||+++++|..++|| .|..++..|.++.+++.++ |...+-++|++|. +.+.+.+|
T Consensus 118 iGGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 118 IGGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred cCCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 45799999999999999999999999999999999 9999999999999998754 3344578999997 66788888
Q ss_pred HhcCC--CcccccCChHHHHHHHhhcCCC---------------CcCeEEEEcCCCCCCCeeecc
Q 015833 86 RACMP--WLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 86 ~~~~~--~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++.+ .+.+.- ..+.-..+++.|.|- +.=.+||+|| +|+.+...
T Consensus 198 ~~eF~pkllGLTG-T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP---eg~Fvd~~ 258 (280)
T KOG2792|consen 198 VSEFHPKLLGLTG-TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP---EGEFVDYY 258 (280)
T ss_pred HHhcChhhhcccC-CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC---Ccceehhh
Confidence 88764 223332 222336778888773 3335788888 88887543
|
|
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=85.51 Aligned_cols=73 Identities=23% Similarity=0.438 Sum_probs=59.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|.||++||++|+.+.+.+.++.+.++.. .++.++.|+++.+ ..+
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~-----------------------~~~ 63 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD--------GKVVVAKVDCTAN-----------------------NDL 63 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC--------CceEEEEeeccch-----------------------HHH
Confidence 458999999999999999999999999888511 2567777766643 788
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|.++|++++++++|+.+.+
T Consensus 64 ~~~~~i~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 64 CSEYGVRGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred HHhCCCCCCCEEEEEcCCCccccc
Confidence 999999999999999877654444
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=90.81 Aligned_cols=113 Identities=18% Similarity=0.247 Sum_probs=88.8
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCC-EEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
...+|..+|||+|+|.+|+.++|.++.|+ +|+++|| +..-|-|.++.-.+.+.|++++..+ .+|+++|.|.. .+-
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s-~sq 138 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDS-ASQ 138 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCch-HHH
Confidence 45678999999999999999999999765 8888888 6778899999999999999999887 99999999866 455
Q ss_pred HHhHhcCCCcccccCChHHHHHHHhhcCCCCcC-------eEEEEcC
Q 015833 83 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIP-------CLVVLQP 122 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P-------~~~lid~ 122 (399)
+.|..+.+...-..+|.. .++.+.+|+...| +.++++.
T Consensus 139 KaF~sKqnlPYhLLSDpk--~e~ik~lGa~k~p~gg~~~Rsh~if~k 183 (211)
T KOG0855|consen 139 KAFASKQNLPYHLLSDPK--NEVIKDLGAPKDPFGGLPGRSHYIFDK 183 (211)
T ss_pred HHhhhhccCCeeeecCcc--hhHHHHhCCCCCCCCCcccceEEEEec
Confidence 666665553222234543 7888888886544 5666664
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=86.35 Aligned_cols=68 Identities=25% Similarity=0.440 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.+.++++.++.. .++.++.|+.+.. ...++++|+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~-----------------------~~~~~~~~~ 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA-----------------------NKDLAKKYG 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc-----------------------chhhHHhCC
Confidence 3679999999999999999999999999998733 2477777755431 167889999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++++
T Consensus 73 i~~~P~~~~~~~ 84 (105)
T cd02998 73 VSGFPTLKFFPK 84 (105)
T ss_pred CCCcCEEEEEeC
Confidence 999999999986
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=86.10 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=54.7
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.|.+.++++++.+. +.++.++.|. ...++++|+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~------------------------~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADV------------------------HQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcc------------------------hHHHHHHCCC
Confidence 567999999999999999999999999998643 7777775542 2678899999
Q ss_pred CCcCeEEEEcC
Q 015833 112 EGIPCLVVLQP 122 (399)
Q Consensus 112 ~~~P~~~lid~ 122 (399)
.++|++++++.
T Consensus 71 ~~~P~~~~~~~ 81 (103)
T cd03001 71 RGFPTIKVFGA 81 (103)
T ss_pred CccCEEEEECC
Confidence 99999999985
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=79.73 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=50.8
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
.+..||++||++|+...|.|+++.+++.. .+.++.|+.+.+ .++++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD----------AVEVEYINVMEN-----------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC----------ceEEEEEeCccC-----------------------HHHHHH
Confidence 46789999999999999999999988853 377788877654 567788
Q ss_pred CCCCccceEEEECCCCcE
Q 015833 280 FDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i 297 (399)
|++.++|++++ +|+.
T Consensus 49 ~~v~~vPt~~~---~g~~ 63 (82)
T TIGR00411 49 YGIMAVPAIVI---NGDV 63 (82)
T ss_pred cCCccCCEEEE---CCEE
Confidence 99999999876 5654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=83.97 Aligned_cols=69 Identities=23% Similarity=0.453 Sum_probs=58.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.+.|+++++.+.+ ++.++.|+.|.. ..++++|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDEN------------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHHcCC
Confidence 57999999999999999999999999988854 388888866533 677889999
Q ss_pred CCcCeEEEEcCCCCCCCeee
Q 015833 112 EGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~ 131 (399)
..+|+++++. +|++..
T Consensus 67 ~~~P~~~~~~----~g~~~~ 82 (101)
T TIGR01068 67 RSIPTLLLFK----NGKEVD 82 (101)
T ss_pred CcCCEEEEEe----CCcEee
Confidence 9999999995 676653
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=106.30 Aligned_cols=69 Identities=17% Similarity=0.341 Sum_probs=57.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++|+|+|||+||++|+.+.|.|+++++++++. ++.++.|++|.+. ...
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~---------~v~~~kVdvD~~~---------------------~~~ 419 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS---------GVKVAKFRADGDQ---------------------KEF 419 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCc---------------------cHH
Confidence 5789999999999999999999999999998754 5788888888652 123
Q ss_pred HHHhCCCCccceEEEECCCC
Q 015833 276 LTKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G 295 (399)
.++.|+|.++||+++| ++|
T Consensus 420 ~~~~~~I~~~PTii~F-k~g 438 (463)
T TIGR00424 420 AKQELQLGSFPTILFF-PKH 438 (463)
T ss_pred HHHHcCCCccceEEEE-ECC
Confidence 4578999999999999 444
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=95.21 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=56.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|.||++||++|+.+.|.|.+++++|. .+.++-|.++ . .
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----------~vkFvkI~ad--~------------------------~ 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----------DTKFVKIIST--Q------------------------C 144 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CCEEEEEEhH--H------------------------h
Confidence 4689999999999999999999999999875 3456555544 1 1
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
...|++.++||++++ ++|+++.+..+
T Consensus 145 ~~~~~i~~lPTlliy-k~G~~v~~ivG 170 (192)
T cd02988 145 IPNYPDKNLPTILVY-RNGDIVKQFIG 170 (192)
T ss_pred HhhCCCCCCCEEEEE-ECCEEEEEEeC
Confidence 467899999999999 99999988544
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=86.04 Aligned_cols=80 Identities=18% Similarity=0.381 Sum_probs=58.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.|+.++|+|+++|||+|+.+.|.|.++.++. +..+..|++|.+.. ....+...-.++.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 4788999999999999999999999998872 26688888875421 00111112245666655
Q ss_pred ----CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 ----IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 ----v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++. +|+.+.+
T Consensus 84 i~~~i~~~PT~v~~k----~Gk~v~~ 105 (122)
T TIGR01295 84 IPTSFMGTPTFVHIT----DGKQVSV 105 (122)
T ss_pred CcccCCCCCEEEEEe----CCeEEEE
Confidence 55699999998 8887765
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-09 Score=85.42 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=53.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++.++|+||++||++|+.+.|.|.++++.+ + .+.+..|+.|.. .+++++|+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~------------------------~~l~~~~~ 72 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDED------------------------KEKAEKYG 72 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcC------------------------HHHHHHcC
Confidence 3567899999999999999999999998875 2 277777766533 67889999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|++++++.
T Consensus 73 v~~vPt~~i~~~ 84 (113)
T cd02975 73 VERVPTTIFLQD 84 (113)
T ss_pred CCcCCEEEEEeC
Confidence 999999999974
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-09 Score=84.42 Aligned_cols=67 Identities=21% Similarity=0.463 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++.+.+++. ..+.+..|+++. .++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~------------------------~~~ 65 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD--------DNVVIAKMDATA------------------------NDV 65 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC--------CCEEEEEEeCcc------------------------hhh
Confidence 578999999999999999999999999988752 245666555542 245
Q ss_pred HHhCCCCccceEEEECCCC
Q 015833 277 TKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G 295 (399)
+..+++.++|+++++.+++
T Consensus 66 ~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 66 PSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred hhhccCCCCCEEEEEcCCC
Confidence 6778899999999995444
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.3e-09 Score=84.51 Aligned_cols=83 Identities=18% Similarity=0.083 Sum_probs=57.8
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
.-++|+|+|+|+++||++|+.+.+.. .++.+.+.+ ++.+|.|+.++..+.... .....
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~----------------~~~~~ 72 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKI----------------YMNAA 72 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHH----------------HHHHH
Confidence 34789999999999999999997632 245555543 388887777654221100 01222
Q ss_pred HhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 106 NRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
...|++.++|+++++++ +|+++...
T Consensus 73 ~~~~~~~G~Pt~vfl~~---~G~~~~~~ 97 (124)
T cd02955 73 QAMTGQGGWPLNVFLTP---DLKPFFGG 97 (124)
T ss_pred HHhcCCCCCCEEEEECC---CCCEEeee
Confidence 33679999999999999 99998765
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-09 Score=103.20 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=56.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.+.+++++|... ++.++.|++|.+. ..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~---------~V~f~kVD~d~~~----------------------~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS---------GVKVAKFRADGDQ----------------------KE 412 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCcc----------------------hH
Confidence 5789999999999999999999999999998744 6888888877331 55
Q ss_pred HHH-hCCCCccceEEEECCC
Q 015833 276 LTK-YFDVQGIPCLVIIGPE 294 (399)
Q Consensus 276 ~~~-~~~v~~~P~~~lid~~ 294 (399)
++. .|+|.++||++++.++
T Consensus 413 la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred HHHhhCCCceeeEEEEEeCC
Confidence 665 6999999999999443
|
|
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-09 Score=81.40 Aligned_cols=67 Identities=18% Similarity=0.368 Sum_probs=56.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.++.. .++.++.|+.+. ...++++|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~------------------------~~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTA------------------------NNDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccc------------------------hHHHHHhCC
Confidence 4569999999999999999999999999998521 247777775542 278899999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++++
T Consensus 69 i~~~Pt~~~~~~ 80 (101)
T cd02961 69 VRGYPTIKLFPN 80 (101)
T ss_pred CCCCCEEEEEcC
Confidence 999999999997
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=77.69 Aligned_cols=68 Identities=31% Similarity=0.589 Sum_probs=57.2
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
++++|+||++||++|..+.+.+.++.++ .. ++.++.|+++.+ ..++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~---------~~~~~~i~~~~~-----------------------~~~~ 56 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YP---------KVKFVKVDVDEN-----------------------PELA 56 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CC---------CceEEEEECCCC-----------------------hhHH
Confidence 7899999999999999999999998877 22 578888887754 6788
Q ss_pred HhCCCCccceEEEECCCCcEEec
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+.|++.++|+++++ ++|+++..
T Consensus 57 ~~~~v~~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 57 EEYGVRSIPTFLFF-KNGKEVDR 78 (93)
T ss_pred HhcCcccccEEEEE-ECCEEEEE
Confidence 99999999999999 56776655
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=80.97 Aligned_cols=66 Identities=15% Similarity=0.418 Sum_probs=53.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.+.++++.+++. .++.+..|+.+. .+++..++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~-------------------------~~~~~~~~ 70 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA-------------------------NDVPSEFV 70 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc-------------------------hhhhhhcc
Confidence 3689999999999999999999999999998763 247777775531 24566788
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
+.++|+++++..
T Consensus 71 ~~~~Pt~~~~~~ 82 (104)
T cd02995 71 VDGFPTILFFPA 82 (104)
T ss_pred CCCCCEEEEEcC
Confidence 899999999985
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=83.13 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=66.1
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHH--HHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLS--IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~--l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
-++|+|+|+|++.||++|+.+....-+ -..++-++ ++.+|-+..|... . +
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---------~Fv~V~l~~d~td--------~----~------- 72 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---------DFIMLNLVHETTD--------K----N------- 72 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---------CeEEEEEEeccCC--------C----C-------
Confidence 358999999999999999998775431 22222222 3544444444221 0 0
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHh
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 332 (399)
.. ..+ .++|+++++|++|+++.+.-+ .++...|-..+.+++.|.+.+++.+
T Consensus 73 ---~~-~~g-~~vPtivFld~~g~vi~~i~G----y~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 73 ---LS-PDG-QYVPRIMFVDPSLTVRADITG----RYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred ---cC-ccC-cccCeEEEECCCCCCcccccc----cccCccceeCcCcHHHHHHHHHHHH
Confidence 00 022 579999999999999877543 5666677777888888888776643
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.2e-09 Score=89.99 Aligned_cols=67 Identities=13% Similarity=0.273 Sum_probs=56.2
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 112 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 112 (399)
++|+|+||++||++|+.+.|.|.++++++. .+.++.|++| . ..++..|+|.
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d------------------------~-~~l~~~f~v~ 134 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRAS------------------------A-TGASDEFDTD 134 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEecc------------------------c-hhhHHhCCCC
Confidence 599999999999999999999999999873 2777777553 1 1677889999
Q ss_pred CcCeEEEEcCCCCCCCeeec
Q 015833 113 GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 113 ~~P~~~lid~~~~~G~i~~~ 132 (399)
.+|+++++. +|+.+..
T Consensus 135 ~vPTlllyk----~G~~v~~ 150 (175)
T cd02987 135 ALPALLVYK----GGELIGN 150 (175)
T ss_pred CCCEEEEEE----CCEEEEE
Confidence 999999998 7888764
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=101.37 Aligned_cols=72 Identities=21% Similarity=0.430 Sum_probs=57.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+++.++|.|||+||++|+++.|.+.++++.++.. ..++.++.|.++.+ ..
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~-------~~~i~~~~vd~~~~-----------------------~~ 97 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK-------KSEIVLASVDATEE-----------------------ME 97 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc-------CCcEEEEEEECCCC-----------------------HH
Confidence 4689999999999999999999999999888754 23455555544433 78
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i 297 (399)
+++.|+|.++||+++++.++.+
T Consensus 98 l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 98 LAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred HHHhcCCCcccEEEEEECCceE
Confidence 9999999999999999544443
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=104.19 Aligned_cols=74 Identities=23% Similarity=0.467 Sum_probs=57.9
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
.+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.|+++.+. +
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----------~~~~v~vDvt~~~-------------------~ 521 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----------DTVLLQADVTANN-------------------A 521 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----------CCEEEEEECCCCC-------------------h
Confidence 4589999999999999999987764 44555553 4667777776432 1
Q ss_pred hhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
.+.+++++|++.++|+++++|++|+++
T Consensus 522 ~~~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 522 EDVALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred hhHHHHHHcCCCCCCEEEEECCCCCCc
Confidence 247889999999999999999999985
|
|
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=101.61 Aligned_cols=68 Identities=16% Similarity=0.383 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++++||+|||+||++|+.+.|.|.++++++++.+ +.++.|++|.+.. ......|+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~----------------------~~~~~~~~ 425 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK----------------------EFAKQELQ 425 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc----------------------HHHHHHcC
Confidence 68899999999999999999999999999997654 7888887764300 23346899
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++..
T Consensus 426 I~~~PTii~Fk~ 437 (463)
T TIGR00424 426 LGSFPTILFFPK 437 (463)
T ss_pred CCccceEEEEEC
Confidence 999999999985
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.8e-09 Score=91.65 Aligned_cols=68 Identities=18% Similarity=0.422 Sum_probs=57.6
Q ss_pred eccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 26 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 26 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
+|+.-.+|.|+|+|+|.||+||++.+|.++.++.+|.. ..++.|++| ..+..
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd------------------------~c~~t 66 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVD------------------------ECRGT 66 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHH------------------------Hhhch
Confidence 35555689999999999999999999999999999943 667777554 23778
Q ss_pred HhhcCCCCcCeEEEEc
Q 015833 106 NRKFDIEGIPCLVVLQ 121 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid 121 (399)
+..+||.++||++++.
T Consensus 67 aa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 67 AATNGVNAMPTFIFFR 82 (288)
T ss_pred hhhcCcccCceEEEEe
Confidence 8899999999999998
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=90.27 Aligned_cols=94 Identities=21% Similarity=0.378 Sum_probs=77.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
...|+|.|||.||+.++.+.|.+.+.++.++++ .++-++|+-++|++.+ ..+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-------~P~~kvvwg~VDcd~e---------------------~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-------FPEGKVVWGKVDCDKE---------------------DDI 64 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-------CCCcceEEEEcccchh---------------------hHH
Confidence 467999999999999999999999999999987 5667899999998864 789
Q ss_pred HHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHh
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 332 (399)
+.+|.|+.+||+-|+ .+|.+..+..+ ..+.+++|...|++.+
T Consensus 65 a~ky~I~KyPTlKvf-rnG~~~~rEYR-------------g~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 65 ADKYHINKYPTLKVF-RNGEMMKREYR-------------GQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhccccCceeeee-eccchhhhhhc-------------cchhHHHHHHHHHHHh
Confidence 999999999999999 89988776422 3344566666665543
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-08 Score=98.23 Aligned_cols=67 Identities=18% Similarity=0.419 Sum_probs=56.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh-hc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 109 (399)
++|++||+|||+||++|+.+.|.|.+++++++..+ +.++.|+.|.. ...++. .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~-----------------------~~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGD-----------------------QKEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCc-----------------------chHHHHhhC
Confidence 58899999999999999999999999999997654 88888876522 145564 69
Q ss_pred CCCCcCeEEEEcC
Q 015833 110 DIEGIPCLVVLQP 122 (399)
Q Consensus 110 ~v~~~P~~~lid~ 122 (399)
+|.++||++++.+
T Consensus 419 ~I~~~PTil~f~~ 431 (457)
T PLN02309 419 QLGSFPTILLFPK 431 (457)
T ss_pred CCceeeEEEEEeC
Confidence 9999999999975
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.2e-08 Score=74.39 Aligned_cols=67 Identities=25% Similarity=0.487 Sum_probs=55.7
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.+.++++++. .. ++.++.|+.+.. ..+.+.|++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~--~~~~~~i~~~~~------------------------~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YP--KVKFVKVDVDEN------------------------PELAEEYGV 61 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CC--CceEEEEECCCC------------------------hhHHHhcCc
Confidence 38999999999999999999999999887 22 488888876542 678889999
Q ss_pred CCcCeEEEEcCCCCCCCee
Q 015833 112 EGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~ 130 (399)
.++|++++++ +|+++
T Consensus 62 ~~~P~~~~~~----~g~~~ 76 (93)
T cd02947 62 RSIPTFLFFK----NGKEV 76 (93)
T ss_pred ccccEEEEEE----CCEEE
Confidence 9999999997 56544
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=78.04 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=99.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+|++ +.+.+ .++++++.||..+|..+.+ ..|.|......+++...++. +..|+.||+|
T Consensus 19 ~vGd~ap~ftl~~~dL~-~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----------~~~Vl~IS~D- 85 (158)
T COG2077 19 QVGDKAPDFTLVGKDLN-DVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----------NTVVLCISMD- 85 (158)
T ss_pred ccCCcCCceEEEcCccc-ceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----------CcEEEEEeCC-
Confidence 47899999999 99999 9999999998877776654 89999999999988877764 5789999999
Q ss_pred CHHHHHHHHhcCCCcccccCCc-hhHHHHHhCCC--Cccc-------eEEEECCCCcEEecccc
Q 015833 250 DQTSFESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIP-------CLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v--~~~P-------~~~lid~~G~i~~~~~~ 303 (399)
-+-+.++|+...+.-+....+| .+..+.+.||+ ...| +.|++|.+|+|++.+..
T Consensus 86 LPFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv 149 (158)
T COG2077 86 LPFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELV 149 (158)
T ss_pred ChhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEcc
Confidence 6778899999988777777777 67789999996 3444 78999999999998644
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.6e-08 Score=76.39 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
|+++++.|+++||++|..+.|.+.+++++|+++ +.++.|++|.. ..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~----------v~f~~vd~~~~-----------------------~~~ 58 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK----------LLFVVVDADDF-----------------------GRH 58 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHhh-----------------------HHH
Confidence 789999999999999999999999999999754 66666665533 678
Q ss_pred HHhCCCC--ccceEEEECC
Q 015833 277 TKYFDVQ--GIPCLVIIGP 293 (399)
Q Consensus 277 ~~~~~v~--~~P~~~lid~ 293 (399)
++.||+. ++|++++++.
T Consensus 59 ~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 59 LEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred HHHcCCChhhCCEEEEEec
Confidence 9999999 9999999966
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.9e-08 Score=72.88 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=47.9
Q ss_pred EEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCc
Q 015833 35 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 114 (399)
Q Consensus 35 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 114 (399)
.+..||++||++|+...|.|+++++.++.. +.++.|+.+++ .++.++|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN------------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC------------------------HHHHHHcCCccC
Confidence 467899999999999999999999988533 77888866533 566788999999
Q ss_pred CeEEE
Q 015833 115 PCLVV 119 (399)
Q Consensus 115 P~~~l 119 (399)
|++++
T Consensus 55 Pt~~~ 59 (82)
T TIGR00411 55 PAIVI 59 (82)
T ss_pred CEEEE
Confidence 99885
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.6e-08 Score=85.77 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++|+|+||++||++|+.+.|.|.+++.++.. +.++.|+++ .....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad---------------------------~~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIST---------------------------QCIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhH---------------------------HhHhhCCC
Confidence 46999999999999999999999999999842 667766442 12467999
Q ss_pred CCcCeEEEEcCCCCCCCeeecc
Q 015833 112 EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~~ 133 (399)
..+|+++++. +|+++..-
T Consensus 151 ~~lPTlliyk----~G~~v~~i 168 (192)
T cd02988 151 KNLPTILVYR----NGDIVKQF 168 (192)
T ss_pred CCCCEEEEEE----CCEEEEEE
Confidence 9999999998 88888654
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=70.87 Aligned_cols=57 Identities=32% Similarity=0.607 Sum_probs=42.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+++||++||++|+...|.|.++ . +.++-|+.|.. .++++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----~------------~~~~~vd~~~~-----------------------~~l~~~~ 42 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----E------------YTYVDVDTDEG-----------------------VELTAKH 42 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----h------------heEEeeeCCCC-----------------------HHHHHHc
Confidence 6899999999999999987543 1 23444444433 6889999
Q ss_pred CCCccceEEEECCCCcEEec
Q 015833 281 DVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~~~ 300 (399)
+|.++||++ +|+.+.+
T Consensus 43 ~v~~~PT~~----~g~~~~~ 58 (75)
T PHA02125 43 HIRSLPTLV----NTSTLDR 58 (75)
T ss_pred CCceeCeEE----CCEEEEE
Confidence 999999986 4666554
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-08 Score=90.93 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=59.5
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
..++|.||||||.+|+++.|.+.++.-++++. +..|-.-.+|++. -..++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdi---------g~PikVGKlDaT~---------------------f~aiA 93 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI---------GLPIKVGKLDATR---------------------FPAIA 93 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhc---------CCceeeccccccc---------------------chhhH
Confidence 58999999999999999999999988877765 4444444556553 27889
Q ss_pred HhCCCCccceEEEECCCCcEEecccc
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
..|||+++||+.++ ++|..+.+.|+
T Consensus 94 nefgiqGYPTIk~~-kgd~a~dYRG~ 118 (468)
T KOG4277|consen 94 NEFGIQGYPTIKFF-KGDHAIDYRGG 118 (468)
T ss_pred hhhccCCCceEEEe-cCCeeeecCCC
Confidence 99999999999999 77766655443
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=69.15 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=49.3
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
-+..|+++||++|+...+.|+++.+.+ +++++..|++|.+ .++++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~-----------------------~~l~~~ 47 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----------PNISAEMIDAAEF-----------------------PDLADE 47 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----------CceEEEEEEcccC-----------------------HhHHHH
Confidence 367899999999999999988886543 2577877777654 568889
Q ss_pred CCCCccceEEEECCCCcEEec
Q 015833 280 FDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~~ 300 (399)
|++.++|++++ +|+++..
T Consensus 48 ~~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 48 YGVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred cCCcccCEEEE---CCEEEEe
Confidence 99999999865 4566543
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.3e-08 Score=99.58 Aligned_cols=74 Identities=19% Similarity=0.391 Sum_probs=58.5
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
.+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.|+++++ +. ...++.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~-------------------~~-~~~~l~ 527 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTAN-------------------NA-EDVALL 527 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCC-------------------Ch-hhHHHH
Confidence 3589999999999999999998764 55666663 277777777643 11 127889
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCee
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
++|++.++|+++++++ +|+++
T Consensus 528 ~~~~v~g~Pt~~~~~~---~G~~i 548 (571)
T PRK00293 528 KHYNVLGLPTILFFDA---QGQEI 548 (571)
T ss_pred HHcCCCCCCEEEEECC---CCCCc
Confidence 9999999999999998 88874
|
|
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=77.90 Aligned_cols=119 Identities=15% Similarity=0.189 Sum_probs=89.0
Q ss_pred cCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC----
Q 015833 175 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---- 249 (399)
Q Consensus 175 ~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---- 249 (399)
...-+|+. +.+|+ .++++.++||++|+.--|+.|+.-......|..|+++|++. +++|++..++.
T Consensus 12 ~siydf~~~d~~G~-~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~---------Gl~ILaFPCNQFg~Q 81 (171)
T KOG1651|consen 12 GSIYDFSAKDLDGE-YVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ---------GLEILAFPCNQFGNQ 81 (171)
T ss_pred cceeeeEEecCCCC-CccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC---------CeEEEEeccccccCc
Confidence 34578888 99999 99999999999999999999999887788999999999977 89999999852
Q ss_pred ---CHHHHHHHHhcCCCcccccCCc------hhHHHHHhCC----------CCccceEEEECCCCcEEecccc
Q 015833 250 ---DQTSFESYFGTMPWLALPFGDP------TIKELTKYFD----------VQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~p~~~d------~~~~~~~~~~----------v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+.+++..++.......+|+... ...-+.+.+. |..==+-||+|++|+++.|.+.
T Consensus 82 Ep~~n~Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 82 EPGSNEEILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred CCCCcHHHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 4467777777555555565321 1122222111 1111256999999999998654
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-07 Score=73.67 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=56.2
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 269 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 269 (399)
+.-++|+++|+|+++||++|+.+.... .++.+.+.+ ++.++.++++...
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~----------~~v~~~~d~~~~e------------------ 64 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE----------NFIFWQCDIDSSE------------------ 64 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh----------CEEEEEecCCCcc------------------
Confidence 334589999999999999999976542 233444432 3444444443221
Q ss_pred CchhHHHHHhCCCCccceEEEECC-CCcEEecc
Q 015833 270 DPTIKELTKYFDVQGIPCLVIIGP-EGKTVTKQ 301 (399)
Q Consensus 270 ~d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~ 301 (399)
...+++.|++.++|+++++|+ +|+++.+.
T Consensus 65 ---~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 65 ---GQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred ---HHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 367899999999999999999 89999874
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-07 Score=74.05 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=45.6
Q ss_pred CCcEEEEEEec--CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 196 VGKTVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 196 ~gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
+.+.+||.|+| |||+ + .|.+.+|+.++... ...+.|.-|.+|...+ ..+
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~------------------~~~ 67 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASA-------TDDLLVAEVGIKDYGE------------------KLN 67 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhh-------cCceEEEEEecccccc------------------hhh
Confidence 34789999999 6665 3 35556666665432 1234455555542100 014
Q ss_pred HHHHHhCCCC--ccceEEEECCCCc
Q 015833 274 KELTKYFDVQ--GIPCLVIIGPEGK 296 (399)
Q Consensus 274 ~~~~~~~~v~--~~P~~~lid~~G~ 296 (399)
.+|+++|+|+ ++||++|| ++|.
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 68 MELGERYKLDKESYPVIYLF-HGGD 91 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEE-eCCC
Confidence 7899999999 99999999 5563
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.3e-07 Score=76.02 Aligned_cols=119 Identities=13% Similarity=0.264 Sum_probs=93.6
Q ss_pred hhcCCCCcccCCCCCceeeccccCCcEEEEEEec--CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 173 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 173 ~g~~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
+|+.+|+|..+..-. .+.+.++.|.-+.|.|.- ...|.|..++..+.++.-+|..+ ++++++.|+|.
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---------nvKlialS~d~v 77 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---------NVKLIALSVDDV 77 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---------CceEEEeehhhH
Confidence 789999999944444 699999999877777884 48999999999999999999876 89999999995
Q ss_pred -CHHHHHHHH----hc-CCCcccccCCchhHHHHHhCCC--------Cc----cceEEEECCCCcEEecc
Q 015833 250 -DQTSFESYF----GT-MPWLALPFGDPTIKELTKYFDV--------QG----IPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 -~~~~~~~~~----~~-~~~~~~p~~~d~~~~~~~~~~v--------~~----~P~~~lid~~G~i~~~~ 301 (399)
+...|.+-+ +. .+-+.+|+..|..++++-.|+. .+ ...+++||++.++.-..
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~ 147 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSF 147 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEE
Confidence 344554444 32 2237889999999999988875 12 44789999999987553
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=70.89 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=45.8
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCC
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 281 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~ 281 (399)
|.||++||++|+...|.++++.+++.. .+++ +.+| +. ..+..|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~----------~~~~--~~v~-~~-----------------------~~a~~~~ 46 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI----------DAEF--EKVT-DM-----------------------NEILEAG 46 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC----------CeEE--EEeC-CH-----------------------HHHHHcC
Confidence 789999999999999999999988753 2444 5555 32 2256689
Q ss_pred CCccceEEEECCCCcEEe
Q 015833 282 VQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 282 v~~~P~~~lid~~G~i~~ 299 (399)
+.++|++++ +|+++.
T Consensus 47 v~~vPti~i---~G~~~~ 61 (76)
T TIGR00412 47 VTATPGVAV---DGELVI 61 (76)
T ss_pred CCcCCEEEE---CCEEEE
Confidence 999999988 888773
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-07 Score=71.65 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=57.5
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
.++++.+.+..|+++||++|....+.+.++.+++. ++++..+.+|..
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----------~i~~~~vd~~~~---------------------- 54 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----------NIEHEMIDGALF---------------------- 54 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----------CceEEEEEhHhC----------------------
Confidence 45677788999999999999999888888876543 467777777644
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.++++.|+|.++|++++ +|+++..
T Consensus 55 -~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 55 -QDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred -HHHHHHcCCccCCEEEE---CCEEEEe
Confidence 67899999999999975 6888775
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-08 Score=88.48 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=61.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
....+|+||||||+||+++.|.+.++--++++.|.++.|-.+ |++.-..++..|+|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKl------------------------DaT~f~aiAnefgi 98 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKL------------------------DATRFPAIANEFGI 98 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccc------------------------ccccchhhHhhhcc
Confidence 358899999999999999999999999999988866666544 44444889999999
Q ss_pred CCcCeEEEEcCCCCCCCeeeccc
Q 015833 112 EGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
+++|++.++.. +-.+-++.+
T Consensus 99 qGYPTIk~~kg---d~a~dYRG~ 118 (468)
T KOG4277|consen 99 QGYPTIKFFKG---DHAIDYRGG 118 (468)
T ss_pred CCCceEEEecC---CeeeecCCC
Confidence 99999999985 444444443
|
|
| >PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-08 Score=60.98 Aligned_cols=29 Identities=38% Similarity=1.165 Sum_probs=14.3
Q ss_pred eecCCCCCCCCc-eeEEcCCCCCCCcCccc
Q 015833 360 FICCDCDEQGSG-WAYQCLECGYEVHPKCV 388 (399)
Q Consensus 360 ~~c~~C~~~~~~-w~~~c~~c~~~~~~~~~ 388 (399)
+.|+-|++.+.+ |.|+|.+|+|.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 369999999998 99999999999999997
|
The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.2e-07 Score=82.12 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=65.9
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..+.+++-|++|+.+.|++|..+.|.|..+.++| |+.|+.||+|.... ..||-...
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y------------g~~v~~vs~DG~~~-----------~~fp~~~~- 171 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY------------GFSVIPVSLDGRPI-----------PSFPNPRP- 171 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh------------CCEEEEEecCCCCC-----------cCCCCCCC-
Confidence 3445677899999999999999999999999887 58999999995421 12333222
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+..+++.+||..+|++||+++++.....
T Consensus 172 ~~g~~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred CHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence 5778999999999999999998844433
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-07 Score=72.33 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
|+++++.|+++||++|..+.|.+.++++++++. +.++.|+.| ....+++.|++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~------------------------~~~~~~~~~~i 64 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDAD------------------------DFGRHLEYFGL 64 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchH------------------------hhHHHHHHcCC
Confidence 789999999999999999999999999999854 888877443 23678999999
Q ss_pred C--CcCeEEEEcC
Q 015833 112 E--GIPCLVVLQP 122 (399)
Q Consensus 112 ~--~~P~~~lid~ 122 (399)
. ++|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999985
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=71.93 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=85.5
Q ss_pred cCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHHH
Q 015833 12 RRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNN 84 (399)
Q Consensus 12 ~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~~~~~~ 84 (399)
.-+|++++.+|++++|++++||++||--.|+-|+.-.. ...|+.+|++|++.| ++|++...+ .+.++..+
T Consensus 5 ~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHH
Confidence 45899999999999999999999999999999998885 556999999999998 999999875 35566667
Q ss_pred hHh-cCCCcccccC-------ChH-HHHHHHhhc-------CCCCcCeEEEEcCCCCCCCeeecc
Q 015833 85 YRA-CMPWLAVPYS-------DLE-TKKALNRKF-------DIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~-~~~~~~~~~~-------d~~-~~~~l~~~~-------~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+ +++..+..|+ +.. .-+-|..+. .|++--+-+|||+ +|+++.+.
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr---~G~VV~Rf 143 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDR---DGNVVKRF 143 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcC---CCcEEEee
Confidence 666 3332211111 100 112333222 4566678899999 99999774
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-07 Score=74.21 Aligned_cols=94 Identities=11% Similarity=0.161 Sum_probs=56.9
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
-++|+|+|+|++.||++|+.+...+- ++.+.+.+ ++.+|.+..|.+... . .
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~-----------------~---~--- 74 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKN-----------------L---S--- 74 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCC-----------------c---C---
Confidence 47999999999999999999986543 23333322 376666655533100 0 0
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHH
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQK 158 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~ 158 (399)
..+ .++|+++++|+ +|+++.+-. ..++-..|.+.+..+..+.+
T Consensus 75 -~~g-~~vPtivFld~---~g~vi~~i~----Gy~~~~~~~y~~~~~~~~~~ 117 (130)
T cd02960 75 -PDG-QYVPRIMFVDP---SLTVRADIT----GRYSNRLYTYEPADIPLLIE 117 (130)
T ss_pred -ccC-cccCeEEEECC---CCCCccccc----ccccCccceeCcCcHHHHHH
Confidence 022 47999999999 998886532 22233334444444444433
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=81.16 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=66.8
Q ss_pred ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 192 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 192 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
+..+.+++-|++||.+.|++|.++.|.|+.+.++| |++|+.||+|.... ..||...
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y------------gi~v~~VS~DG~~~-----------p~fp~~~- 200 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY------------GISVIPISVDGTLI-----------PGLPNSR- 200 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCcc-
Confidence 34455678899999999999999999999999887 58999999996521 2233332
Q ss_pred hhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.+...++.+||..+|+++|++++++....
T Consensus 201 ~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 201 SDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred CChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 25778899999999999999999654444
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.5e-07 Score=64.83 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=43.9
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++||++|+...+.|+++.+.. . ++.+..+++|.. .+++++|++.++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--~--~i~~~~id~~~~------------------------~~l~~~~~i~~vP 54 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--P--NISAEMIDAAEF------------------------PDLADEYGVMSVP 54 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--C--ceEEEEEEcccC------------------------HhHHHHcCCcccC
Confidence 67899999999999999999886642 2 377777755432 5678899999999
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 55 ti~i 58 (67)
T cd02973 55 AIVI 58 (67)
T ss_pred EEEE
Confidence 9865
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-05 Score=83.86 Aligned_cols=178 Identities=12% Similarity=0.133 Sum_probs=105.8
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
.++++.+.++.|+.+.|..|......|+++++. .+. +.+... |.....++++
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~---i~~~~~------------------------~~~~~~~~~~ 413 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEK---LNSEAV------------------------NRGEEPESET 413 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCc---EEEEEe------------------------ccccchhhHh
Confidence 456778888899888898998887777766633 332 544433 2222377888
Q ss_pred hcCCCCcCeEEEEcCCCCCCC---eeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCC
Q 015833 108 KFDIEGIPCLVVLQPYDDKDD---ATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH 184 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~---i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~ 184 (399)
.|++...|++.+++. +|+ +.... .|.-.+....+...... +...+..
T Consensus 414 ~~~v~~~P~~~i~~~---~~~~~~i~f~g------------~P~G~Ef~s~i~~i~~~-----------~~~~~~l---- 463 (555)
T TIGR03143 414 LPKITKLPTVALLDD---DGNYTGLKFHG------------VPSGHELNSFILALYNA-----------AGPGQPL---- 463 (555)
T ss_pred hcCCCcCCEEEEEeC---CCcccceEEEe------------cCccHhHHHHHHHHHHh-----------cCCCCCC----
Confidence 999999999999975 442 33321 23333322222222111 1111111
Q ss_pred CCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCc
Q 015833 185 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL 264 (399)
Q Consensus 185 ~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 264 (399)
+.+..=.+..+.+...+-.|.+++|++|......++++..+. +++..-.|.....
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-----------~~i~~~~i~~~~~-------------- 518 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-----------PNVEAEMIDVSHF-------------- 518 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-----------CCceEEEEECccc--------------
Confidence 000001123344555677778999999998776666665543 2455555544422
Q ss_pred ccccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 265 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 265 ~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++++.|+|.++|++++ ||+++..
T Consensus 519 ---------~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 519 ---------PDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ---------HHHHHhCCceecCEEEE---CCEEEEe
Confidence 78899999999999976 4666554
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.4e-07 Score=66.93 Aligned_cols=50 Identities=32% Similarity=0.545 Sum_probs=38.6
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.||++||++|+...|.|.++. +.++.|+.|. ..+++++|+|.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~------------------------~~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDE------------------------GVELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCC------------------------CHHHHHHcCCceeC
Confidence 78999999999999999986541 3344443322 27889999999999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
+++
T Consensus 49 T~~ 51 (75)
T PHA02125 49 TLV 51 (75)
T ss_pred eEE
Confidence 987
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.2e-07 Score=71.74 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=46.6
Q ss_pred CCCEEEEEEec--CCCc---ccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 31 EGKVTALYFSA--NWYP---PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 31 ~gk~vlv~F~a--~wC~---~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
+.+.+||.|+| |||+ +|.+++|.+.+.++ ++.|..|+.|.. ....+.+|
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~-------------------~~~~~~~L 70 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDY-------------------GEKLNMEL 70 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccc-------------------cchhhHHH
Confidence 56899999999 8887 55555555444322 377777766421 11223889
Q ss_pred HhhcCCC--CcCeEEEEcC
Q 015833 106 NRKFDIE--GIPCLVVLQP 122 (399)
Q Consensus 106 ~~~~~v~--~~P~~~lid~ 122 (399)
+.+|+|+ ++||++|+..
T Consensus 71 ~~~y~I~~~gyPTl~lF~~ 89 (116)
T cd03007 71 GERYKLDKESYPVIYLFHG 89 (116)
T ss_pred HHHhCCCcCCCCEEEEEeC
Confidence 9999999 9999999984
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=69.17 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=54.8
Q ss_pred Cccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 179 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 179 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
+|++ +.+|+ .++++.++||++||.-.|+.|+.-. ....|++|+++|+++ +++|+++.++
T Consensus 3 df~~~~~~G~-~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~---------gl~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGK-PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK---------GLEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSS-EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG---------TEEEEEEEBS
T ss_pred ceeeeCCCCC-EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC---------CeEEEeeehH
Confidence 5777 89999 9999999999999999999999988 888999999999977 8999999986
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.4e-07 Score=66.21 Aligned_cols=54 Identities=17% Similarity=0.096 Sum_probs=42.4
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
-|.||++||++|+...|.+.++.+++... +.++.| | + ...+..|++.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~~v--~---------------------~----~~~a~~~~v~~vP 51 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEFEKV--T---------------------D----MNEILEAGVTATP 51 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEEEe--C---------------------C----HHHHHHcCCCcCC
Confidence 37899999999999999999999997533 666555 2 1 2225679999999
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 52 ti~i 55 (76)
T TIGR00412 52 GVAV 55 (76)
T ss_pred EEEE
Confidence 9988
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=86.89 Aligned_cols=68 Identities=24% Similarity=0.408 Sum_probs=55.1
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 112 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 112 (399)
+..+|.||++||++|++++|.+.++++.+..=..-+.|..|+.- +. .+..+++.|+|.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------------------~~-~N~~lCRef~V~ 115 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------------------DE-ENVKLCREFSVS 115 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------------------ch-hhhhhHhhcCCC
Confidence 47789999999999999999999999998764323556666442 11 338999999999
Q ss_pred CcCeEEEEcC
Q 015833 113 GIPCLVVLQP 122 (399)
Q Consensus 113 ~~P~~~lid~ 122 (399)
++|++..+.+
T Consensus 116 ~~Ptlryf~~ 125 (606)
T KOG1731|consen 116 GYPTLRYFPP 125 (606)
T ss_pred CCceeeecCC
Confidence 9999999987
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=65.56 Aligned_cols=44 Identities=39% Similarity=0.681 Sum_probs=33.2
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecC
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
-+||+++|+|+++||++|+.+...+ .++.+.+..+ +..+.|+.+
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcC
Confidence 4689999999999999999998766 3344434433 777777664
|
... |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-06 Score=67.73 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=56.4
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
+|+++|.+|+.++|+.++||++||---|+-|+.-. ....|++++++|++.| ++|+++..+
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBS
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehH
Confidence 68999999999999999999999999999999888 8889999999999987 999999875
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=78.48 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=63.7
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..+.+++-|++||.+.|++|.++.|.|+.+.++| |+.|+.||+|.... ..||....
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------------g~~v~~VS~DG~~~-----------p~fp~~~~- 194 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------------GLSVIPVSVDGVIN-----------PLLPDSRT- 194 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCCcc-
Confidence 3444567899999999999999999999999887 58999999996421 23333322
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+...+..+||..+|+++|++++++-.
T Consensus 195 d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 195 DQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred ChhHHHhcCCcccceEEEEECCCCcE
Confidence 34566899999999999999997443
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-06 Score=78.27 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=64.6
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+..+.+++-|++|+.+.|++|..+.|.|+.++++++ +.|+.||+|...-. .|.+...+..++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~-------------~fp~~~~~~g~~ 176 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIP-------------SFPNPRPDPGQA 176 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCc-------------CCCCCCCCHHHH
Confidence 455678899999999999999999999999999983 99999999965211 122222237888
Q ss_pred hhcCCCCcCeEEEEcCCCCCC
Q 015833 107 RKFDIEGIPCLVVLQPYDDKD 127 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G 127 (399)
++++|..+|+++|+++ ++
T Consensus 177 ~~l~v~~~Pal~Lv~~---~~ 194 (215)
T PF13728_consen 177 KRLGVKVTPALFLVNP---NT 194 (215)
T ss_pred HHcCCCcCCEEEEEEC---CC
Confidence 9999999999999998 65
|
|
| >PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-07 Score=54.86 Aligned_cols=29 Identities=34% Similarity=0.969 Sum_probs=27.4
Q ss_pred eecCCCCCCCCce-eEEcCCCCCCCcCccc
Q 015833 360 FICCDCDEQGSGW-AYQCLECGYEVHPKCV 388 (399)
Q Consensus 360 ~~c~~C~~~~~~w-~~~c~~c~~~~~~~~~ 388 (399)
++|+-|.+...+- .|+|++|+|+||+.||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5899999999988 9999999999999997
|
The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins. |
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.4e-06 Score=70.67 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=87.1
Q ss_pred cccccCCeEE---ecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--hHH
Q 015833 8 VQQLRRRMTS---TKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--LNA 81 (399)
Q Consensus 8 ~~~~~p~f~l---~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~--~~~ 81 (399)
+...+|+|.- .|-.-+.++|++++||+|+++|| ..+--.|..+.-.++..+.+|++-+ -+|+++|+|.- .-+
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLA 83 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhh
Confidence 3455688763 35555789999999999999999 5666699999999999999999876 89999999853 223
Q ss_pred HHHhHhcCC---CcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 82 FNNYRACMP---WLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 82 ~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
|...-++.+ -+.+|. -.+...++++.|||- .+-.+++||+ +|.+.+-
T Consensus 84 W~ntprk~gGlg~~~iPl-lsD~~~~IsrdyGvL~~~~G~~lRglfIId~---~gi~R~i 139 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPL-LSDLNHEISRDYGVLKEDEGIALRGLFIIDP---DGILRQI 139 (196)
T ss_pred HhcCchhhCCcCccccce-eeccchhhHHhcCceecCCCcceeeeEEEcc---ccceEEe
Confidence 333333222 233443 333448999999993 4568899998 8877654
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=66.06 Aligned_cols=45 Identities=31% Similarity=0.632 Sum_probs=32.3
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
-+||+++|+|+++||++|+.+...+ .++.+.+.+ ++..+.|..+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~----------~fv~v~vd~~~ 62 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK----------NFVLVKVDVDD 62 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH----------CSEEEEEETTT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC----------CEEEEEEEcCC
Confidence 3589999999999999999987766 233443443 46666666653
|
... |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=72.68 Aligned_cols=77 Identities=22% Similarity=0.441 Sum_probs=46.9
Q ss_pred ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 194 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 194 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.+..+..++.|..+|||.|....|.|.++.+... ++++-.|..|.+.+...++.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-----------~i~~~~i~rd~~~el~~~~l--------------- 91 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANP-----------NIEVRIILRDENKELMDQYL--------------- 91 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-----------TEEEEEE-HHHHHHHTTTTT---------------
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-----------CCeEEEEEecCChhHHHHHH---------------
Confidence 3445678889999999999999999999998743 46777777775432111111
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
. .|...+|+++++|.+|+.+.+.
T Consensus 92 ---t--~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 92 ---T--NGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp ---T---SS--SSEEEEE-TT--EEEEE
T ss_pred ---h--CCCeecCEEEEEcCCCCEeEEE
Confidence 1 4689999999999999998874
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.7e-06 Score=65.80 Aligned_cols=72 Identities=33% Similarity=0.612 Sum_probs=53.9
Q ss_pred EEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHH
Q 015833 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 103 (399)
Q Consensus 24 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 103 (399)
......+.++++++.||++||++|+..+|.+.++++++.. .+.++.++... ...
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~-----------------------~~~ 77 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDD-----------------------ENP 77 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCC-----------------------CCh
Confidence 3445555589999999999999999999999999999875 26777776641 114
Q ss_pred HHHhhcC--CCCcCeEEEEc
Q 015833 104 ALNRKFD--IEGIPCLVVLQ 121 (399)
Q Consensus 104 ~l~~~~~--v~~~P~~~lid 121 (399)
.+...|+ +..+|++++..
T Consensus 78 ~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 78 DLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred HHHHHHhhhhccCCeEEEEe
Confidence 5555566 77788887655
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.9e-06 Score=64.84 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=51.7
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+.+++++.-+..|+++||++|+...+.+.++.+.+. ++.+..++.| ...+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~------------------------~~~e~a 58 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGA------------------------LFQDEV 58 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhH------------------------hCHHHH
Confidence 346788888999999999999999999998887642 2666666443 227888
Q ss_pred hhcCCCCcCeEEE
Q 015833 107 RKFDIEGIPCLVV 119 (399)
Q Consensus 107 ~~~~v~~~P~~~l 119 (399)
++|+|.++|++++
T Consensus 59 ~~~~V~~vPt~vi 71 (89)
T cd03026 59 EERGIMSVPAIFL 71 (89)
T ss_pred HHcCCccCCEEEE
Confidence 9999999999974
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=65.85 Aligned_cols=70 Identities=16% Similarity=0.350 Sum_probs=50.6
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
-.+|.++|+|+++||+.|..+....- ++.+.+.+ ++-++.++++...
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----------~fv~~~~dv~~~e-------------------- 74 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----------NFIFWQVDVDTSE-------------------- 74 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----------CEEEEEecCCChh--------------------
Confidence 35789999999999999999766432 23333332 3444445444332
Q ss_pred hhHHHHHhCCCCccceEEEECCCC
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G 295 (399)
...++..|++.++|+++++|++|
T Consensus 75 -g~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 75 -GQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred -HHHHHHhcCcCCCCEEEEEecCC
Confidence 36789999999999999999997
|
|
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-05 Score=65.34 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=94.6
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
..++|..+|+|++.+.+.+.++++++.||..+|..+ +-.-|.|-.+...+++.+.++.+ ..++.||.|-. -+..
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DLP-FAq~ 91 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDLP-FAQK 91 (158)
T ss_pred CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCCh-hHHh
Confidence 357899999999999999999999999997777766 66788999999999998888743 78999999844 4445
Q ss_pred HhHhcCCCc-ccccCChHHHHHHHhhcCCC--Cc-------CeEEEEcCCCCCCCeeeccchhhhhh
Q 015833 84 NYRACMPWL-AVPYSDLETKKALNRKFDIE--GI-------PCLVVLQPYDDKDDATLHDGVELIYK 140 (399)
Q Consensus 84 ~~~~~~~~~-~~~~~d~~~~~~l~~~~~v~--~~-------P~~~lid~~~~~G~i~~~~~~~~i~~ 140 (399)
++....+.. .++.+|- ....+.+.||+. .. ...+++|. +|++++......+.+
T Consensus 92 RfC~aeGi~nv~~lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De---~g~V~y~elv~eit~ 154 (158)
T COG2077 92 RFCGAEGIENVITLSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDE---NGKVTYSELVPEITE 154 (158)
T ss_pred hhhhhcCcccceEhhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcC---CCcEEEEEccchhhc
Confidence 565554433 2333332 226788889873 23 36788887 999998876655443
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-06 Score=78.26 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=60.2
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
...|+|.|||.||+.++.++|.+.+.+++++.+-++-.+|+-.+ |++....|+.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~V----------------------Dcd~e~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKV----------------------DCDKEDDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEc----------------------ccchhhHHhhhhcc
Confidence 56999999999999999999999999999987654444554444 44444889999999
Q ss_pred CCcCeEEEEcCCCCCCCeee
Q 015833 112 EGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~ 131 (399)
..+||+.++. +|....
T Consensus 71 ~KyPTlKvfr----nG~~~~ 86 (375)
T KOG0912|consen 71 NKYPTLKVFR----NGEMMK 86 (375)
T ss_pred ccCceeeeee----ccchhh
Confidence 9999999998 675543
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-05 Score=62.89 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=54.9
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHH-H--HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHH
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGV-L--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 104 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 104 (399)
+.-++|+++|+|+++||++|..+... | .++.+.+++. +.++.++++.. + ...
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~-------------------e---~~~ 67 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSS-------------------E---GQR 67 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCc-------------------c---HHH
Confidence 34468999999999999999998653 2 2344444432 66665544321 1 167
Q ss_pred HHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 105 LNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 105 l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+++.|++.++|+++++++ .+|+++..
T Consensus 68 ~~~~~~~~~~P~~~~i~~--~~g~~l~~ 93 (114)
T cd02958 68 FLQSYKVDKYPHIAIIDP--RTGEVLKV 93 (114)
T ss_pred HHHHhCccCCCeEEEEeC--ccCcEeEE
Confidence 889999999999999997 24666643
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.1e-06 Score=76.01 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=62.9
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
++.+.+++-|++||.+.|++|..+.|.++.++++++ +.|+.||+|...- ..+| +...+..++
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~-----------p~fp--~~~~d~gqa 206 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLI-----------PGLP--NSRSDSGQA 206 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCC--CccCChHHH
Confidence 455677899999999999999999999999999973 9999999996521 1122 222236788
Q ss_pred hhcCCCCcCeEEEEcC
Q 015833 107 RKFDIEGIPCLVVLQP 122 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~ 122 (399)
++++|..+|+++|+++
T Consensus 207 ~~l~v~~~Pal~Lv~~ 222 (256)
T TIGR02739 207 QHLGVKYFPALYLVNP 222 (256)
T ss_pred HhcCCccCceEEEEEC
Confidence 9999999999999998
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-06 Score=83.94 Aligned_cols=69 Identities=23% Similarity=0.428 Sum_probs=56.9
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
+..+|.||++||++|+.++|.++++++.+... .+-+.|.+|++-.+. +..+|
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA~~~---------------------N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCADEE---------------------NVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc-------cceeEEEEeeccchh---------------------hhhhH
Confidence 46899999999999999999999999998866 334556666554332 58999
Q ss_pred HhCCCCccceEEEECCC
Q 015833 278 KYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~ 294 (399)
+.|+|.++|++..+.++
T Consensus 110 Ref~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPD 126 (606)
T ss_pred hhcCCCCCceeeecCCc
Confidence 99999999999999776
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.9e-06 Score=74.84 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=61.9
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
++++.+++-|++||.+.|++|..+.|.|+.++++++ +.|+.||+|.... ..+| +...+...+
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~~-----------p~fp--~~~~d~gqa 199 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVIN-----------PLLP--DSRTDQGQA 199 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCC--CCccChhHH
Confidence 455667899999999999999999999999999973 8999999996521 1122 222225566
Q ss_pred hhcCCCCcCeEEEEcC
Q 015833 107 RKFDIEGIPCLVVLQP 122 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~ 122 (399)
.+++|..+|+++|+++
T Consensus 200 ~~l~v~~~PAl~Lv~~ 215 (248)
T PRK13703 200 QRLGVKYFPALMLVDP 215 (248)
T ss_pred HhcCCcccceEEEEEC
Confidence 8999999999999998
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-05 Score=55.06 Aligned_cols=63 Identities=29% Similarity=0.575 Sum_probs=48.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.||++||++|....+.+.++ ++.. .++.++.++++..... ......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~--------------------~~~~~~~ 49 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---------KGVKFEAVDVDEDPAL--------------------EKELKRY 49 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---------CCcEEEEEEcCCChHH--------------------hhHHHhC
Confidence 4789999999999999999988 3332 3789999998865321 1113578
Q ss_pred CCCccceEEEECCC
Q 015833 281 DVQGIPCLVIIGPE 294 (399)
Q Consensus 281 ~v~~~P~~~lid~~ 294 (399)
++..+|++++++++
T Consensus 50 ~~~~~P~~~~~~~~ 63 (69)
T cd01659 50 GVGGVPTLVVFGPG 63 (69)
T ss_pred CCccccEEEEEeCC
Confidence 89999999999765
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=63.50 Aligned_cols=71 Identities=38% Similarity=0.625 Sum_probs=53.6
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
....++++++.||++||++|+...|.+.++.+++.. .+.++.+.....
T Consensus 28 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~i~~~~~---------------------- 75 (127)
T COG0526 28 SELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG----------DVEVVAVNVDDE---------------------- 75 (127)
T ss_pred hhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC----------CcEEEEEECCCC----------------------
Confidence 334488999999999999999999999999998863 367888877511
Q ss_pred hHHHHHhCC--CCccceEEEECCCCc
Q 015833 273 IKELTKYFD--VQGIPCLVIIGPEGK 296 (399)
Q Consensus 273 ~~~~~~~~~--v~~~P~~~lid~~G~ 296 (399)
...+...|+ +..+|+++++ .+|.
T Consensus 76 ~~~~~~~~~~~~~~~p~~~~~-~~~~ 100 (127)
T COG0526 76 NPDLAAEFGVAVRSIPTLLLF-KDGK 100 (127)
T ss_pred ChHHHHHHhhhhccCCeEEEE-eCcc
Confidence 256666677 7888988766 3443
|
|
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.5e-05 Score=68.66 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=85.4
Q ss_pred HhhhcCCCCccc-CCCCCce-eeccccC--CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 171 NLLTNHDRGYLL-GHPPDEK-VPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~-~~l~~~~--gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
..+|..+||..+ +.+|+ . .++.++. +++++|+|.+-.||+=..-+..++++.++|.+. .+++.|.
T Consensus 73 a~~G~~APns~vv~l~g~-~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~----------adFl~VY 141 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQ-RSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV----------ADFLIVY 141 (237)
T ss_pred eeCCCCCCCCceEeeCCC-cceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh----------hheehhh
Confidence 347999999999 99999 6 8898884 499999999888999999999999999999875 3455554
Q ss_pred cCC--------------------CHH----HHHHHHhcCCCcccccCCc-hhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 247 TDR--------------------DQT----SFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 247 ~d~--------------------~~~----~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+.. +.+ ..+...+.. ...|+..| .+....+.||..-- .++|| .+|+|++.+
T Consensus 142 I~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~--~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~G 217 (237)
T PF00837_consen 142 IEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF--PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKG 217 (237)
T ss_pred HhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC--CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeC
Confidence 411 111 122222233 46778777 47788888975433 45666 699999986
Q ss_pred c
Q 015833 302 G 302 (399)
Q Consensus 302 ~ 302 (399)
|
T Consensus 218 g 218 (237)
T PF00837_consen 218 G 218 (237)
T ss_pred C
Confidence 5
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.3e-05 Score=63.44 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=50.2
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
.-++|+++|+|+++||+.|..+.... .++.+.+.. ++.++.++++.. +. ..+
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~---------------------eg-~~l 78 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTS---------------------EG-QRV 78 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCCh---------------------hH-HHH
Confidence 34789999999999999999987542 123334432 266666644322 12 678
Q ss_pred HhhcCCCCcCeEEEEcC
Q 015833 106 NRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~ 122 (399)
+..|++.++|+++++++
T Consensus 79 ~~~~~~~~~P~~~~l~~ 95 (122)
T smart00594 79 SQFYKLDSFPYVAIVDP 95 (122)
T ss_pred HHhcCcCCCCEEEEEec
Confidence 99999999999999998
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00015 Score=59.83 Aligned_cols=69 Identities=9% Similarity=0.125 Sum_probs=54.4
Q ss_pred EEEEEecC--CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 200 VGLYFSAR--WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 200 vll~F~a~--wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
.+|+|-+. -++-+....-.|.++.++|.+. ++.++.|++|.+ ..++
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~---------~v~~akVDiD~~-----------------------~~LA 84 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQS-----------------------EAIG 84 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCC---------ceEEEEEECCCC-----------------------HHHH
Confidence 44444432 5677777888899999998632 477888888755 7899
Q ss_pred HhCCCCccceEEEECCCCcEEecc
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
..|||.++||++++ ++|+.+.+.
T Consensus 85 ~~fgV~siPTLl~F-kdGk~v~~i 107 (132)
T PRK11509 85 DRFGVFRFPATLVF-TGGNYRGVL 107 (132)
T ss_pred HHcCCccCCEEEEE-ECCEEEEEE
Confidence 99999999999999 999999874
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=62.51 Aligned_cols=84 Identities=18% Similarity=0.346 Sum_probs=45.6
Q ss_pred ccccCCcEEEEEEecCCChhhhhhHHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH-HHHHHHHhcCCCcccc
Q 015833 192 VSSLVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ-TSFESYFGTMPWLALP 267 (399)
Q Consensus 192 l~~~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~-~~~~~~~~~~~~~~~p 267 (399)
.+.-.+|+++|.++++||.+|..+... + .++++.+.+. +|.|.+|++. .++...+..
T Consensus 32 ~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~------------FI~VkvDree~Pdid~~y~~------- 92 (163)
T PF03190_consen 32 KAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN------------FIPVKVDREERPDIDKIYMN------- 92 (163)
T ss_dssp HHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-------------EEEEEETTT-HHHHHHHHH-------
T ss_pred HHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC------------EEEEEeccccCccHHHHHHH-------
Confidence 334457999999999999999987652 2 2344444443 6777777653 222222211
Q ss_pred cCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 268 FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 268 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
......|..|+|++++++++|+.+...
T Consensus 93 -------~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 -------AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp -------HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred -------HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 111122788999999999999998753
|
; PDB: 3IRA_A. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.7e-05 Score=51.59 Aligned_cols=62 Identities=31% Similarity=0.576 Sum_probs=47.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.||++||++|....+.+.++ ..... ++.++.++.+..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNK--GVKFEAVDVDEDPAL---------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCC--CcEEEEEEcCCChHH---------------------hhHHHhCCCcccc
Confidence 4789999999999999999998 33333 488988887655221 1114578899999
Q ss_pred eEEEEcC
Q 015833 116 CLVVLQP 122 (399)
Q Consensus 116 ~~~lid~ 122 (399)
++++++.
T Consensus 56 ~~~~~~~ 62 (69)
T cd01659 56 TLVVFGP 62 (69)
T ss_pred EEEEEeC
Confidence 9999985
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00019 Score=60.64 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=59.7
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
...-+|+..|.+|+.|+|+.++||++||---|+-|+.-...-..|..++++|++.| ++|++...+
T Consensus 12 ~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN 76 (171)
T KOG1651|consen 12 GSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN 76 (171)
T ss_pred cceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence 35568999999999999999999999999999999999977889999999999998 999999874
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00072 Score=56.42 Aligned_cols=85 Identities=25% Similarity=0.470 Sum_probs=59.5
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC-
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD- 270 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~- 270 (399)
-.+|+.++.|-.+.|++|.++-..+.. +.+-+.. ++.++-+....+.. ..+-.+.
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~----------hf~~~~l~i~~skp-----------v~f~~g~k 98 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE----------HFSAYYLNISYSKP-----------VLFKVGDK 98 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh----------CeEEEEEEeccCcc-----------eEeecCce
Confidence 457999999999999999987665532 3333332 47777776643321 1111111
Q ss_pred ---chhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 271 ---PTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 271 ---d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
-...++++.|+|+++|+++++|++|+.+..
T Consensus 99 ee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 99 EEKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred eeeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 135799999999999999999999998866
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=60.62 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=44.0
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
..+..+..++-|..+|||.|....|.|.++++... ++.+=.+..|+. .++..
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~------------------------~el~~ 88 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDEN------------------------KELMD 88 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHH------------------------HHHTT
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCC------------------------hhHHH
Confidence 34566788899999999999999999999999843 255544544322 33333
Q ss_pred h---cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 108 K---FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 108 ~---~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+ .+...+|+++++|. +|+.+.+
T Consensus 89 ~~lt~g~~~IP~~I~~d~---~~~~lg~ 113 (129)
T PF14595_consen 89 QYLTNGGRSIPTFIFLDK---DGKELGR 113 (129)
T ss_dssp TTTT-SS--SSEEEEE-T---T--EEEE
T ss_pred HHHhCCCeecCEEEEEcC---CCCEeEE
Confidence 3 46789999999998 7877755
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.4e-05 Score=74.87 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=54.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHH-HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLV-DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
++|+|+|+|||.||-.|+.+.+..- +.....+-.+ +..+-++..++ |.. ..++.++|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~--~vlLqaDvT~~-------------------~p~-~~~lLk~~ 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD--VVLLQADVTAN-------------------DPA-ITALLKRL 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC--eEEEEeeecCC-------------------CHH-HHHHHHHc
Confidence 4569999999999999999987544 5455544443 66666655333 333 37889999
Q ss_pred CCCCcCeEEEEcCCCCCCCe
Q 015833 110 DIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i 129 (399)
++-+.|+++++++ +|+-
T Consensus 531 ~~~G~P~~~ff~~---~g~e 547 (569)
T COG4232 531 GVFGVPTYLFFGP---QGSE 547 (569)
T ss_pred CCCCCCEEEEECC---CCCc
Confidence 9999999999998 6643
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00044 Score=50.54 Aligned_cols=56 Identities=25% Similarity=0.518 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|+++||++|+...+.|.+ . ++.+..++++.+.+. ..++.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~-------------------~~~~~~~~ 46 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K---------GIAFEEIDVEKDSAA-------------------REEVLKVL 46 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C---------CCeEEEEeccCCHHH-------------------HHHHHHHh
Confidence 467899999999988766643 2 467777887765421 14567778
Q ss_pred CCCccceEEEE
Q 015833 281 DVQGIPCLVII 291 (399)
Q Consensus 281 ~v~~~P~~~li 291 (399)
++.++|++++.
T Consensus 47 ~~~~vP~~~~~ 57 (74)
T TIGR02196 47 GQRGVPVIVIG 57 (74)
T ss_pred CCCcccEEEEC
Confidence 99999999763
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00027 Score=60.00 Aligned_cols=123 Identities=16% Similarity=0.308 Sum_probs=87.7
Q ss_pred CCccccccccccCCeEEecCCCCEEeccccCCCEEEEEEe--cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-
Q 015833 1 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE- 77 (399)
Q Consensus 1 ~~~~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~- 77 (399)
|+...+..|..+|+|+.-...|+ +.+.|+-|.-..|.|. |..-|.|.+++..+++++-+|..++ +..|+.|+|.
T Consensus 1 m~~~~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~v 77 (224)
T KOG0854|consen 1 MDGPRLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDV 77 (224)
T ss_pred CCCCcccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhH
Confidence 56677778999999999888886 9999998887777777 6778999999999999999999886 9999999984
Q ss_pred -ChHHHHHhHh----cCCCcccccC-ChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCee
Q 015833 78 -DLNAFNNYRA----CMPWLAVPYS-DLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 78 -~~~~~~~~~~----~~~~~~~~~~-d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~ 130 (399)
+...|.+-++ ..+- .++|+ -.+...+++-.|++- ..-.++++++ +.++.
T Consensus 78 esH~~Wi~DIks~~~~~~~-~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~p---dkKir 144 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNH-SVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDP---DKKIR 144 (224)
T ss_pred HHHHHHHHHHHHHHhccCC-CCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECC---CceEE
Confidence 3344443332 1121 12222 112236777666551 2446778888 76665
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00035 Score=51.85 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=39.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH-h
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK-Y 279 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~-~ 279 (399)
+..||++||++|+...+.|.++ ++.+-.|+++.+... ...+.+ .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~----------------~~~~~~idi~~~~~~-------------------~~~~~~~~ 46 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL----------------GAAYEWVDIEEDEGA-------------------ADRVVSVN 46 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCceEEEeCcCCHhH-------------------HHHHHHHh
Confidence 5679999999999988876543 234455666654321 112222 2
Q ss_pred CCCCccceEEEECCCCcEEec
Q 015833 280 FDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.++|++ ++ .+|+++..
T Consensus 47 ~~~~~vP~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 47 NGNMTVPTV-KF-ADGSFLTN 65 (77)
T ss_pred CCCceeCEE-EE-CCCeEecC
Confidence 578999986 46 46776654
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00055 Score=55.61 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred cCCcEEEEEEecC----CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 015833 195 LVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 270 (399)
Q Consensus 195 ~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 270 (399)
-.+|.++|+++++ ||..|+..+.. .++.+-+.+ ++-+++.+++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~----------~fv~w~~dv~~~e------------------- 64 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT----------RMLFWACSVAKPE------------------- 64 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc----------CEEEEEEecCChH-------------------
Confidence 3579999999999 88899775432 233333332 4555555555332
Q ss_pred chhHHHHHhCCCCccceEEEE---CCCCcEEec
Q 015833 271 PTIKELTKYFDVQGIPCLVII---GPEGKTVTK 300 (399)
Q Consensus 271 d~~~~~~~~~~v~~~P~~~li---d~~G~i~~~ 300 (399)
..+++..+++.++|++.++ +.+.+++.+
T Consensus 65 --g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 65 --GYRVSQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred --HHHHHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 3789999999999999999 555666766
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=9.3e-05 Score=64.97 Aligned_cols=90 Identities=20% Similarity=0.401 Sum_probs=67.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
.++++|.|+|.|.+.|....|.+.++..+|... ++++-.|.+..- ...
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~---------~lkFGkvDiGrf-----------------------pd~ 191 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN---------LLKFGKVDIGRF-----------------------PDV 191 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCC---------CCcccceeeccC-----------------------cCh
Confidence 468999999999999999999999999999754 677777776654 234
Q ss_pred HHhCCC------CccceEEEECCCCcEEecccchhhhhhc-ccCCCCChHHH
Q 015833 277 TKYFDV------QGIPCLVIIGPEGKTVTKQGRNLINLYQ-ENAYPFTEAKL 321 (399)
Q Consensus 277 ~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~g-~~~~p~~~~~~ 321 (399)
+.+|+| +..||.+|+ ++|+-+.|. +.+..-| ...|+|+++-+
T Consensus 192 a~kfris~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv 240 (265)
T KOG0914|consen 192 AAKFRISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENV 240 (265)
T ss_pred HHheeeccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHH
Confidence 555555 678999999 889887764 3333333 45588888754
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=73.11 Aligned_cols=77 Identities=26% Similarity=0.465 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHH-HHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLS-IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
++|+|+|+|||.||-.|+.+.+..-. .....+- .++..+-+++..+. +.+.
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---------~~~vlLqaDvT~~~-------------------p~~~ 524 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---------QDVVLLQADVTAND-------------------PAIT 524 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---------CCeEEEEeeecCCC-------------------HHHH
Confidence 45699999999999999997775442 2222221 24555555443221 2257
Q ss_pred HHHHhCCCCccceEEEECCCCcEEec
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.++|++-+.|++++++++|+-...
T Consensus 525 ~lLk~~~~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 525 ALLKRLGVFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred HHHHHcCCCCCCEEEEECCCCCcCcC
Confidence 88999999999999999999875433
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00024 Score=53.73 Aligned_cols=59 Identities=19% Similarity=0.342 Sum_probs=41.1
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++|||+|+...+.|.++. +.. .++++-|+.+.+.. .....+.+.+++..+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~-------------------~~~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGS-------------------EIQDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence 46789999999999999988865 211 26666665543311 2224577778999999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
+++
T Consensus 57 ~v~ 59 (84)
T TIGR02180 57 NIF 59 (84)
T ss_pred eEE
Confidence 975
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00059 Score=49.84 Aligned_cols=56 Identities=18% Similarity=0.491 Sum_probs=40.5
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
+..|+++||++|+...+.|.+ .+ +.+..++++.+.. ...++.+.+++.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~--------------------~~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSA--------------------AREEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHH--------------------HHHHHHHHhCCCccc
Confidence 467899999999998877654 23 6666676654422 125677889999999
Q ss_pred eEEEE
Q 015833 116 CLVVL 120 (399)
Q Consensus 116 ~~~li 120 (399)
++++-
T Consensus 53 ~~~~~ 57 (74)
T TIGR02196 53 VIVIG 57 (74)
T ss_pred EEEEC
Confidence 98864
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00032 Score=53.08 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=44.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+++|||+|....+.|.++. +. ..+.++-|+.+.+..+.+ ..+.+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----------~~~~~~~v~~~~~~~~~~------------------~~l~~~~ 50 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----------PAYEVVELDQLSNGSEIQ------------------DYLEEIT 50 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----------CCCEEEEeeCCCChHHHH------------------HHHHHHh
Confidence 46789999999999998888765 21 126677777664433222 3466677
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
++..+|+++ + +|+.+
T Consensus 51 g~~~vP~v~-i--~g~~i 65 (84)
T TIGR02180 51 GQRTVPNIF-I--NGKFI 65 (84)
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 899999985 4 45543
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0007 Score=54.96 Aligned_cols=77 Identities=22% Similarity=0.474 Sum_probs=48.3
Q ss_pred CcEEEEEEec-------CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 015833 197 GKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 269 (399)
Q Consensus 197 gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 269 (399)
|++++|+|++ +|||.|....|.+++......+ +..+|-|.+. +...|+.-
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~----------~~~lv~v~VG-~r~~Wkdp------------ 75 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE----------NARLVYVEVG-DRPEWKDP------------ 75 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST----------TEEEEEEE----HHHHC-T------------
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC----------CceEEEEEcC-CHHHhCCC------------
Confidence 5677888874 3999999999999988777432 5677777775 34444321
Q ss_pred CchhHHHHH--hCCCCccceEEEECCCCcEEe
Q 015833 270 DPTIKELTK--YFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 270 ~d~~~~~~~--~~~v~~~P~~~lid~~G~i~~ 299 (399)
+..+.. .+.++++||++-++..++++.
T Consensus 76 ---~n~fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 76 ---NNPFRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp ---TSHHHH--CC---SSSEEEECTSS-EEEH
T ss_pred ---CCCceEcceeeeeecceEEEECCCCccch
Confidence 233333 589999999999977666554
|
; PDB: 1V9W_A 1WOU_A. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0023 Score=59.35 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=56.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec---CC-------------CH-HHHHHHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DR-------------DQ-TSFESYF 258 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~---d~-------------~~-~~~~~~~ 258 (399)
.++.+++.|..+.||+|+++...+.++.+. . +++|..+.+ .. ++ ..|..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g----------~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~ 183 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G----------KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYE 183 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C----------ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHH
Confidence 467899999999999999998887765432 1 244444432 11 11 1122222
Q ss_pred hcCCC--ccccc--------CCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 259 GTMPW--LALPF--------GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 259 ~~~~~--~~~p~--------~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..... +.-+- ..+.+..+++.+|++++|++|+.|.+|++...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 184 ASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred HhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 11110 00110 11235668899999999999999999986444
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0038 Score=57.18 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=54.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---C----------------HHHHHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---D----------------QTSFES 256 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~----------------~~~~~~ 256 (399)
.|+.+++.|..+.||+|+++.+.+.++.+ . ++.|..+.... . ...+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~---------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~ 172 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L---------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDD 172 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C---------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHH
Confidence 36789999999999999999888776532 2 35555543211 0 112222
Q ss_pred HHhcCCCcc---cccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 257 YFGTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 257 ~~~~~~~~~---~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++.... .. .....+.+.++++.+||+++|+++ + ++|+.+
T Consensus 173 ~~~~~~-~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~-~~G~~~ 214 (232)
T PRK10877 173 AMKGKD-VSPASCDVDIADHYALGVQFGVQGTPAIV-L-SNGTLV 214 (232)
T ss_pred HHcCCC-CCcccccchHHHhHHHHHHcCCccccEEE-E-cCCeEe
Confidence 222111 11 111223678899999999999998 4 578765
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0014 Score=54.74 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=60.0
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
..++|+++++|..+.|++|..+...+. ++.+-+++. +.++.+....+.... +..+- . .......+|
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skpv~--f~~g~--k----ee~~s~~EL 107 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKPVL--FKVGD--K----EEKMSTEEL 107 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcceE--eecCc--e----eeeecHHHH
Confidence 347899999999999999999875543 344445443 777777664321100 00000 0 011233799
Q ss_pred HhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 106 NRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++.|+|+++|+++++|. +|+.+..
T Consensus 108 a~kf~vrstPtfvFfdk---~Gk~Il~ 131 (182)
T COG2143 108 AQKFAVRSTPTFVFFDK---TGKTILE 131 (182)
T ss_pred HHHhccccCceEEEEcC---CCCEEEe
Confidence 99999999999999999 8877644
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00027 Score=60.43 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=45.8
Q ss_pred CEEeccccCCCEEEEEEecCCCcccHhhHH-HH--HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCCh
Q 015833 23 EEVKVSDLEGKVTALYFSANWYPPCGNFTG-VL--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 99 (399)
Q Consensus 23 ~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p-~l--~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~ 99 (399)
+.+..+.-++|+|+|+++++||..|..+.. .+ .++++.+... |.-|.|+.++.++- |.
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdi----------------d~ 88 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDI----------------DK 88 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHH----------------HH
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccH----------------HH
Confidence 444555567999999999999999998874 22 2244444433 65555554433221 11
Q ss_pred HHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 100 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 100 ~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.-........+..++|+.+++.+ +|+.+..
T Consensus 89 ~y~~~~~~~~~~gGwPl~vfltP---dg~p~~~ 118 (163)
T PF03190_consen 89 IYMNAVQAMSGSGGWPLTVFLTP---DGKPFFG 118 (163)
T ss_dssp HHHHHHHHHHS---SSEEEEE-T---TS-EEEE
T ss_pred HHHHHHHHhcCCCCCCceEEECC---CCCeeee
Confidence 00011112237789999999999 9998865
|
; PDB: 3IRA_A. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=48.47 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEecCCCcccHhhHHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVDV 57 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l 57 (399)
++.||++||++|+...+.|.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4678999999999998877553
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=52.73 Aligned_cols=73 Identities=21% Similarity=0.489 Sum_probs=45.2
Q ss_pred cCCCEEEEEEecC-------CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 30 LEGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 30 ~~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
-.|++++|.|.++ |||.|+.-.|.+++..+...+ +..+|.|.+... ..|+ +..
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r-~~Wk--------------dp~-- 76 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDR-PEWK--------------DPN-- 76 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---H-HHHC---------------TT--
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCH-HHhC--------------CCC--
Confidence 3568889999854 999999999999998887433 377777766322 2211 111
Q ss_pred HHHHh--hcCCCCcCeEEEEcC
Q 015833 103 KALNR--KFDIEGIPCLVVLQP 122 (399)
Q Consensus 103 ~~l~~--~~~v~~~P~~~lid~ 122 (399)
..... .++++++||++-++.
T Consensus 77 n~fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 77 NPFRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp SHHHH--CC---SSSEEEECTS
T ss_pred CCceEcceeeeeecceEEEECC
Confidence 22333 699999999999986
|
; PDB: 1V9W_A 1WOU_A. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0069 Score=45.10 Aligned_cols=58 Identities=24% Similarity=0.433 Sum_probs=39.8
Q ss_pred ecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCc
Q 015833 205 SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG 284 (399)
Q Consensus 205 ~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~ 284 (399)
++++|+.|......++++.+.+. +++-.+.. .+. .++ ..|||.+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------------i~~ei~~~-~~~----------------------~~~-~~ygv~~ 49 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------------IEVEIIDI-EDF----------------------EEI-EKYGVMS 49 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------------EEEEEEET-TTH----------------------HHH-HHTT-SS
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------------CeEEEEEc-cCH----------------------HHH-HHcCCCC
Confidence 57789999988877777766652 44433443 232 455 8999999
Q ss_pred cceEEEECCCCcEEecc
Q 015833 285 IPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 285 ~P~~~lid~~G~i~~~~ 301 (399)
+|++ ++ ||+++..+
T Consensus 50 vPal-vI--ng~~~~~G 63 (76)
T PF13192_consen 50 VPAL-VI--NGKVVFVG 63 (76)
T ss_dssp SSEE-EE--TTEEEEES
T ss_pred CCEE-EE--CCEEEEEe
Confidence 9999 55 58887663
|
... |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0049 Score=46.93 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=45.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|+.+||++|......|+++..++. ++.+..|+++.+..+ ..++.+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-----------~i~~~~idi~~~~~~-------------------~~el~~~~ 52 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-----------DFDYRYVDIHAEGIS-------------------KADLEKTV 52 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-----------CCcEEEEECCCChHH-------------------HHHHHHHH
Confidence 567889999999999999998876542 467777777754321 12333333
Q ss_pred --CCCccceEEEECCCCcEEe
Q 015833 281 --DVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 281 --~v~~~P~~~lid~~G~i~~ 299 (399)
++..+|+++ + +|+.+.
T Consensus 53 ~~~~~~vP~if-i--~g~~ig 70 (85)
T PRK11200 53 GKPVETVPQIF-V--DQKHIG 70 (85)
T ss_pred CCCCCcCCEEE-E--CCEEEc
Confidence 458899976 4 566653
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0041 Score=55.44 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=56.5
Q ss_pred eeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--C--------------HHH
Q 015833 190 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--D--------------QTS 253 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~--~--------------~~~ 253 (399)
+.+..-.+++.++.|..+.||+|+++.+.+.+ ... +-.+.++.+.... . .+.
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~--------~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a 137 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NAD--------GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKA 137 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccC--------ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHH
Confidence 33333347889999999999999999988776 111 1134555555432 1 112
Q ss_pred HHHHHhcCCC-ccc---ccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 254 FESYFGTMPW-LAL---PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 254 ~~~~~~~~~~-~~~---p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
|.++.....- ... ....+.+..+++.+||+++|+++ + ++|+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 138 WTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred HHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 3222222111 011 12233677899999999999997 5 457764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >cd02340 ZZ_NBR1_like Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0005 Score=45.14 Aligned_cols=31 Identities=32% Similarity=0.775 Sum_probs=28.2
Q ss_pred ecCCCCCCCCceeEEcCCC-CCCCcCcccccc
Q 015833 361 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 391 (399)
Q Consensus 361 ~c~~C~~~~~~w~~~c~~c-~~~~~~~~~~~~ 391 (399)
.|+.|++...+-+|+|.+| ||||+..|....
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence 6999999999999999999 899999998653
|
Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain. |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.009 Score=53.27 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=56.5
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh----------------HHHHHhHhc
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL----------------NAFNNYRAC 88 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~----------------~~~~~~~~~ 88 (399)
+.+..-.++..++.|+.+.||+|+++.+.+.+ ...+-.+.++.+...... +.+.+....
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 33333357899999999999999999998876 122323555555543211 112222221
Q ss_pred CCC---cccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 89 MPW---LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 89 ~~~---~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
..- ......+...+..+++.+||.++|+++ ++ +|+.+
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~----~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA----DGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC----CCeEe
Confidence 110 001111334567899999999999997 44 56553
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.065 Score=55.23 Aligned_cols=69 Identities=12% Similarity=0.201 Sum_probs=47.7
Q ss_pred ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 194 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 194 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.+.+..-+..|..+.||+|......++++.... +++..-.| |... .
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-----------~~i~~~~i--d~~~---------------------~ 158 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-----------PNITHTMI--DGAL---------------------F 158 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-----------CCceEEEE--Echh---------------------C
Confidence 344556688899999999998777776666532 24444444 5433 3
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEe
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~ 299 (399)
++++..|++.++|++++ +|+.+.
T Consensus 159 ~~~~~~~~v~~VP~~~i---~~~~~~ 181 (517)
T PRK15317 159 QDEVEARNIMAVPTVFL---NGEEFG 181 (517)
T ss_pred HhHHHhcCCcccCEEEE---CCcEEE
Confidence 78999999999999976 344443
|
|
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0011 Score=59.75 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=57.8
Q ss_pred ccccccCCeEEecCCCCE-EeccccC--CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEE
Q 015833 7 YVQQLRRRMTSTKEIGEE-VKVSDLE--GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 73 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~-v~l~~~~--gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~V 73 (399)
..|..|||..+...+|+. .++.|+. ++|++|+|.+-.||+=+.-++.+++++++|.+. .++.+|.|
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI 142 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYI 142 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhH
Confidence 458899999999999998 9999984 789999999999999999999999999999874 24666655
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=47.67 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=48.2
Q ss_pred ccCCCEEEEEEecC----CCcccHhhH--HHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 29 DLEGKVTALYFSAN----WYPPCGNFT--GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 29 ~~~gk~vlv~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
.-++|.++|+++++ ||..|+..+ |.+.+ -+.+ ++.+++.++... +.
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~---~ln~---~fv~w~~dv~~~---------------------eg- 65 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIE---YINT---RMLFWACSVAKP---------------------EG- 65 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHH---HHHc---CEEEEEEecCCh---------------------HH-
Confidence 44789999999999 888997765 44443 3322 377766666433 11
Q ss_pred HHHHhhcCCCCcCeEEEEcC
Q 015833 103 KALNRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 103 ~~l~~~~~v~~~P~~~lid~ 122 (399)
.+++..+++..+|++.++.+
T Consensus 66 ~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 66 YRVSQALRERTYPFLAMIML 85 (116)
T ss_pred HHHHHHhCCCCCCEEEEEEe
Confidence 77899999999999999965
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.012 Score=41.49 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=38.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+.+|||+|......|+ +. ++..-.+.++.+.+. ..++.+..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~-------~~---------~i~y~~~dv~~~~~~-------------------~~~l~~~~ 45 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD-------EK---------GIPYEEVDVDEDEEA-------------------REELKELS 45 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH-------HT---------TBEEEEEEGGGSHHH-------------------HHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHH-------Hc---------CCeeeEcccccchhH-------------------HHHHHHHc
Confidence 46788999999998766552 22 577777777765421 24455555
Q ss_pred CCCccceEEE
Q 015833 281 DVQGIPCLVI 290 (399)
Q Consensus 281 ~v~~~P~~~l 290 (399)
|...+|++++
T Consensus 46 g~~~~P~v~i 55 (60)
T PF00462_consen 46 GVRTVPQVFI 55 (60)
T ss_dssp SSSSSSEEEE
T ss_pred CCCccCEEEE
Confidence 8999999986
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=55.13 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+.+|||.||-+.++.|..+...|..|+.+|. .++++.|..... . +
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~~-----------------------~-~ 190 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYP-----------EVKFVKIRASKC-----------------------P-A 190 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----------TSEEEEEEECGC-----------------------C-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----------ceEEEEEehhcc-----------------------C-c
Confidence 4589999999999999999999999999987 467887776532 1 4
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
...|....+|+++++ ++|.++....+
T Consensus 191 ~~~f~~~~LPtllvY-k~G~l~~~~V~ 216 (265)
T PF02114_consen 191 SENFPDKNLPTLLVY-KNGDLIGNFVG 216 (265)
T ss_dssp TTTS-TTC-SEEEEE-ETTEEEEEECT
T ss_pred ccCCcccCCCEEEEE-ECCEEEEeEEe
Confidence 566889999999999 89998877543
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0023 Score=56.38 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=60.7
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
-+.+..+|.|||.|.+-|+...|.+.++..+|..++ +.+-.|++.+- ...+.+|
T Consensus 142 nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf------------------------pd~a~kf 195 (265)
T KOG0914|consen 142 NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF------------------------PDVAAKF 195 (265)
T ss_pred CCceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC------------------------cChHHhe
Confidence 355688999999999999999999999999998876 55444543221 2334555
Q ss_pred CC------CCcCeEEEEcCCCCCCCeeeccchhhhhhc-CCCCCCCChHHH
Q 015833 110 DI------EGIPCLVVLQPYDDKDDATLHDGVELIYKY-GIRAFPFTKEKL 153 (399)
Q Consensus 110 ~v------~~~P~~~lid~~~~~G~i~~~~~~~~i~~~-g~~~~p~~~~~~ 153 (399)
+| +..||++++. +|+-+.+.. .+... ....++++++..
T Consensus 196 ris~s~~srQLPT~ilFq----~gkE~~RrP--~vd~~gra~s~~fSeenv 240 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQ----KGKEVSRRP--DVDVKGRAVSFPFSEENV 240 (265)
T ss_pred eeccCcccccCCeEEEEc----cchhhhcCc--cccccCCcccccccHHHH
Confidence 55 5789999998 565544321 12222 122366666543
|
|
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0074 Score=46.25 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=48.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--CC-----HHHHHHHHh-cCCCcccccCCc-
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--RD-----QTSFESYFG-TMPWLALPFGDP- 271 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--~~-----~~~~~~~~~-~~~~~~~p~~~d- 271 (399)
+..|+.+.||+|....+.+.++...... ++++..+.+. .. ....+.... ........+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG----------GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL 70 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC----------cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3578899999999999999988744332 4667666653 22 111111110 000000000000
Q ss_pred hhHHHHHhCCCCccceEEEEC
Q 015833 272 TIKELTKYFDVQGIPCLVIIG 292 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid 292 (399)
.+...++.+|+.++|++++-|
T Consensus 71 ~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHcCCCCCCEEEECC
Confidence 467788999999999998876
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0084 Score=44.63 Aligned_cols=58 Identities=21% Similarity=0.448 Sum_probs=38.7
Q ss_pred EecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEE
Q 015833 39 FSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLV 118 (399)
Q Consensus 39 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~ 118 (399)
+++++|++|......++++.+.++ .+++++-+ .+. .++ .+|||.++|+++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~-----------------------~~~---~~~-~~ygv~~vPalv 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG---IEVEIIDI-----------------------EDF---EEI-EKYGVMSVPALV 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT---EEEEEEET-----------------------TTH---HHH-HHTT-SSSSEEE
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEc-----------------------cCH---HHH-HHcCCCCCCEEE
Confidence 357889999998888888887763 12444321 022 566 999999999995
Q ss_pred EEcCCCCCCCeeec
Q 015833 119 VLQPYDDKDDATLH 132 (399)
Q Consensus 119 lid~~~~~G~i~~~ 132 (399)
+ ||+++..
T Consensus 55 -I-----ng~~~~~ 62 (76)
T PF13192_consen 55 -I-----NGKVVFV 62 (76)
T ss_dssp -E-----TTEEEEE
T ss_pred -E-----CCEEEEE
Confidence 4 4555544
|
... |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.22 Score=51.28 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=44.1
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..+.+..-+..|..+.||+|+.....++++.... +++..-. +|...
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-----------p~i~~~~--id~~~--------------------- 158 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-----------PNISHTM--IDGAL--------------------- 158 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-----------CCceEEE--EEchh---------------------
Confidence 3344566788899999999987666665555442 2344333 44332
Q ss_pred hHHHHHhCCCCccceEEE
Q 015833 273 IKELTKYFDVQGIPCLVI 290 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~l 290 (399)
.+++++.|++.++|++++
T Consensus 159 ~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 159 FQDEVEALGIQGVPAVFL 176 (515)
T ss_pred CHHHHHhcCCcccCEEEE
Confidence 378899999999999976
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.014 Score=54.09 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEe--c-C-------------CCh-HHHHHhHhcCCCc-
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS--S-D-------------EDL-NAFNNYRACMPWL- 92 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs--~-D-------------~~~-~~~~~~~~~~~~~- 92 (399)
.+|.+++.|+-+.||+|+++.+.+.++.+. | ++++..+. + . .++ ..+..+.......
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 568889999999999999999888775543 2 24443332 2 1 111 1222222111100
Q ss_pred -cccc--C-----ChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCe
Q 015833 93 -AVPY--S-----DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 93 -~~~~--~-----d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i 129 (399)
..+- + ....+.++.+.+|++++|++++.|. +|.+
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~---~G~~ 232 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK---DGTL 232 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence 0000 0 0113467888999999999999998 8874
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.033 Score=51.03 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=52.1
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC----C---------------hHHHHHhHhcCC
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE----D---------------LNAFNNYRACMP 90 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~----~---------------~~~~~~~~~~~~ 90 (399)
-+||.+++.|.-+.||+|+++.+.+.++.+ .+ +++..+..-. + ..++.+......
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 367899999999999999999988776533 33 5555543211 1 111222222111
Q ss_pred Ccc-cccCChHHHHHHHhhcCCCCcCeEEEE
Q 015833 91 WLA-VPYSDLETKKALNRKFDIEGIPCLVVL 120 (399)
Q Consensus 91 ~~~-~~~~d~~~~~~l~~~~~v~~~P~~~li 120 (399)
... ....+...+.++++++||+++|++++-
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~ 209 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQGTPAIVLS 209 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCccccEEEEc
Confidence 100 111234466899999999999999953
|
|
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.37 Score=41.77 Aligned_cols=68 Identities=29% Similarity=0.435 Sum_probs=47.1
Q ss_pred CcE-EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 197 GKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 197 gk~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+++ +++.|..............|.+++++++++ +.++.+..+.. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~----------~~f~~~d~~~~-----------------------~~ 140 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK----------INFVYVDADDF-----------------------PR 140 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT----------SEEEEEETTTT-----------------------HH
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe----------EEEEEeehHHh-----------------------HH
Confidence 344 777776555666666777777777777654 56666666633 56
Q ss_pred HHHhCCCC--ccceEEEECCCCcE
Q 015833 276 LTKYFDVQ--GIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~--~~P~~~lid~~G~i 297 (399)
+.+.||+. .+|++++++.....
T Consensus 141 ~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 141 LLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HHHHTTTTTSSSSEEEEEETTTSE
T ss_pred HHHHcCCCCccCCEEEEEECCCCc
Confidence 78889997 89999999855443
|
... |
| >cd02339 ZZ_Mind_bomb Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0025 Score=42.18 Aligned_cols=30 Identities=37% Similarity=1.005 Sum_probs=26.3
Q ss_pred ecCCCCCCC-CceeEEcCCC-CCCCcCccccc
Q 015833 361 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 361 ~c~~C~~~~-~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.|+.|++.. .+-+|+|.+| ||||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 699999655 4999999999 89999999864
|
Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster. |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.023 Score=49.35 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=29.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHh
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQ 228 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~ 228 (399)
.+++.++.|+...||+|..+.+.+.++.+++..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 578899999999999999999999998888743
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.05 Score=48.31 Aligned_cols=112 Identities=19% Similarity=0.364 Sum_probs=79.5
Q ss_pred CCCCccc-CCCCCceeecccc-CCcE--EEEEEe-----cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 176 HDRGYLL-GHPPDEKVPVSSL-VGKT--VGLYFS-----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~-~gk~--vll~F~-----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
-..++.+ +.+| +++|.++ .|+- ++..|- ..-|+.|...+..+......+.++ ++.++.||
T Consensus 45 v~~~Y~F~g~~G--~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r---------d~tfa~vS 113 (211)
T PF05988_consen 45 VDKDYVFDGPDG--PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR---------DTTFAVVS 113 (211)
T ss_pred CCCCeEEeCCCC--cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC---------CceEEEEe
Confidence 3455777 5666 4888885 5653 333333 235999999999997777777765 78899998
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC-----CccceEEEECCC-CcEEec
Q 015833 247 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPE-GKTVTK 300 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v-----~~~P~~~lid~~-G~i~~~ 300 (399)
-. ..+++..|.+.|+|- +|..+.....+...|++ ...|.+-+|=++ |+|...
T Consensus 114 ra-P~~~i~afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 114 RA-PLEKIEAFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred CC-CHHHHHHHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 65 678899999999997 99988877788888887 556655444344 555443
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.034 Score=46.01 Aligned_cols=77 Identities=12% Similarity=0.272 Sum_probs=55.3
Q ss_pred ecccc--CCCEEEEEEecC--CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHH
Q 015833 26 KVSDL--EGKVTALYFSAN--WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 101 (399)
Q Consensus 26 ~l~~~--~gk~vlv~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 101 (399)
++.++ .+...+|+|-.. -+|-+....-.|.+++++|.+. ++.++.|++|..
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~----------------------- 80 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQS----------------------- 80 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCC-----------------------
Confidence 44554 233556666522 3455666677888888898533 388888877644
Q ss_pred HHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 102 KKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 102 ~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+++.+|+|.++|+++++. +|+.+..
T Consensus 81 -~~LA~~fgV~siPTLl~Fk----dGk~v~~ 106 (132)
T PRK11509 81 -EAIGDRFGVFRFPATLVFT----GGNYRGV 106 (132)
T ss_pred -HHHHHHcCCccCCEEEEEE----CCEEEEE
Confidence 8999999999999999998 8888855
|
|
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.015 Score=43.60 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=38.7
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|.++|||+|....+.|.++.. +++++-|+.+... ......+.+.++...+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~-------------------~~~~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDG-------------------SEIQDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCCh-------------------HHHHHHHHHHhCCCCCC
Confidence 477889999999999888777433 2566666554331 11224566777888999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 56 ~v~ 58 (82)
T cd03419 56 NVF 58 (82)
T ss_pred eEE
Confidence 974
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.022 Score=43.53 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=49.4
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC--CC-----hHHHHHhHh-cCCCcccccCChHHHHHHHh
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--ED-----LNAFNNYRA-CMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D--~~-----~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~ 107 (399)
+..|+.+.||+|....+.+.++.....+ ++.+..+.+. .. ......... ........+.+.-....+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 3678899999999999999998744332 3666666542 21 111111111 00000011111113477888
Q ss_pred hcCCCCcCeEEEEc
Q 015833 108 KFDIEGIPCLVVLQ 121 (399)
Q Consensus 108 ~~~v~~~P~~~lid 121 (399)
.+|+.++|++++-+
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 99999999999876
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.016 Score=43.44 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=40.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|.++|||+|......|.++.. .++++-|+.+.+..+. ...+.+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~------------------~~~~~~~~ 49 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------------KPAVVELDQHEDGSEI------------------QDYLQELT 49 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------------CcEEEEEeCCCChHHH------------------HHHHHHHh
Confidence 467889999999988777776432 2456666665442221 13456667
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|..++|.+ ++ +|+.+
T Consensus 50 g~~~~P~v-~~--~g~~i 64 (82)
T cd03419 50 GQRTVPNV-FI--GGKFI 64 (82)
T ss_pred CCCCCCeE-EE--CCEEE
Confidence 88999997 44 35544
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0091 Score=53.15 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+++.+++.||++||.+|.++...+..+.+.++ + +.++ +.+.+. ..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~----------~~~~--k~~a~~---------------------~~e 61 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-N----------AQFL--KLEAEE---------------------FPE 61 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-h----------heee--eehhhh---------------------hhH
Confidence 56889999999999999998888887777663 2 3444 444333 378
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++..+.+.+.|.++++ ..|+.+.+
T Consensus 62 is~~~~v~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 62 ISNLIAVEAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred HHHHHHHhcCceeeee-ecchhhhh
Confidence 9999999999999888 77776665
|
|
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.094 Score=47.24 Aligned_cols=116 Identities=9% Similarity=0.124 Sum_probs=78.8
Q ss_pred CCCCcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 015833 176 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255 (399)
Q Consensus 176 ~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 255 (399)
+.|.+++ +| ...+.+..|+++||.+-..+|..|...+..|+.|..++... +..++.++.|+--.....++
T Consensus 9 ~~p~W~i--~~--~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~------g~~~I~f~vVN~~~~~s~~~ 78 (238)
T PF04592_consen 9 PPPPWKI--GG--QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENE------GLSNISFMVVNHQGEHSRLK 78 (238)
T ss_pred CCCCceE--CC--chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHC------CCCceEEEEEcCCCcchhHH
Confidence 3455553 22 24456788999999999999999999999999999999865 24567777777432222222
Q ss_pred -HHHhcCCCcccccCC-c-hhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 256 -SYFGTMPWLALPFGD-P-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 256 -~~~~~~~~~~~p~~~-d-~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
..++..--..+|+.. + ....+...++-..- -++|+|+=|++++.-+
T Consensus 79 ~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd-D~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 79 YWELKRRVSEHIPVYQQDENQPDVWELLNGSKD-DFLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHHhCCCCCceecCCccccCHHHHhCCCcC-cEEEEeccCcEEEEec
Confidence 223322224477764 3 45677777775543 6889999999998743
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.038 Score=46.07 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=76.6
Q ss_pred hhhcCCCCccc-CC------CCCceeeccc-cCCcEEEEEEecC--CChhhhh-hHHHHHHHHHHHHhhhhhcCCCCCCE
Q 015833 172 LLTNHDRGYLL-GH------PPDEKVPVSS-LVGKTVGLYFSAR--WCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF 240 (399)
Q Consensus 172 ~~g~~~p~f~l-~~------~g~~~~~l~~-~~gk~vll~F~a~--wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~~ 240 (399)
.+|+..|+.++ .. .|-..++..+ ++||.|+| |..| ..|.|.. .+|.+.+++++|+.+ ++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~k---------GV 73 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAK---------GV 73 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHc---------CC
Confidence 45777777766 32 1221334444 46776655 5544 6788877 899999999999976 44
Q ss_pred -EEEEEecCCC--HHHHHHHHhcCCCcccccCCchhHHHHHhCCC-----------CccceEEEECCCCcEEecc
Q 015833 241 -EVVFVSTDRD--QTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 241 -~vv~is~d~~--~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 301 (399)
+|+.||+++. -.+|.+.....+ .+.+..|.+.++.+.+|. ++.....|+ +||.+..-+
T Consensus 74 D~I~cVSVND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 74 DEIYCVSVNDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred ceEEEEEeCcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 5788888732 244555554443 566677777888887654 556667888 789887653
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.019 Score=45.88 Aligned_cols=72 Identities=19% Similarity=0.388 Sum_probs=47.5
Q ss_pred CCCEEEEEEec--------CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 31 EGKVTALYFSA--------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 31 ~gk~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
+|+.++|.|.+ +|||.|.+-.|.+.+..+.. ++++.+|.|.+.+.+. |... .
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a---p~~~~~v~v~VG~rp~----------Wk~p-----~-- 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA---PEDVHFVHVYVGNRPY----------WKDP-----A-- 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC---CCceEEEEEEecCCCc----------ccCC-----C--
Confidence 67789999985 59999999999998877743 3347777776532210 2111 0
Q ss_pred HHHHhhcCC-CCcCeEEEEcC
Q 015833 103 KALNRKFDI-EGIPCLVVLQP 122 (399)
Q Consensus 103 ~~l~~~~~v-~~~P~~~lid~ 122 (399)
..+....++ .++||++=.+.
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 233344555 88999987763
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.054 Score=39.07 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=35.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+++||++|......|.+ . ++.+..+.+|.+... ...+.+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~---------~i~~~~~~i~~~~~~-------------------~~~~~~~~ 46 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R---------GIPFEEVDVDEDPEA-------------------LEELKKLN 46 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C---------CCCeEEEeCCCCHHH-------------------HHHHHHHc
Confidence 467889999999986665543 2 355666777654321 12334444
Q ss_pred CCCccceEEE
Q 015833 281 DVQGIPCLVI 290 (399)
Q Consensus 281 ~v~~~P~~~l 290 (399)
++..+|++++
T Consensus 47 ~~~~vP~i~~ 56 (73)
T cd02976 47 GYRSVPVVVI 56 (73)
T ss_pred CCcccCEEEE
Confidence 7899999865
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.043 Score=57.08 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=49.0
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..+++.+.|+.|+.+.|..|......|+++. ++. +.+++..+..+.+
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s----------~~i~~~~~~~~~~---------------------- 408 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLS----------EKLNSEAVNRGEE---------------------- 408 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcC----------CcEEEEEeccccc----------------------
Confidence 3466777888999888988887666555555 222 2355555443322
Q ss_pred hHHHHHhCCCCccceEEEECCCCc
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~ 296 (399)
.++++.|++...|++.|++.+|.
T Consensus 409 -~~~~~~~~v~~~P~~~i~~~~~~ 431 (555)
T TIGR03143 409 -PESETLPKITKLPTVALLDDDGN 431 (555)
T ss_pred -hhhHhhcCCCcCCEEEEEeCCCc
Confidence 67888999999999999976663
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.058 Score=38.87 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=34.6
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++||++|......|.+ .+ +.+..+++|.+.. ...++.+..++..+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~--------------------~~~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPE--------------------ALEELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHH--------------------HHHHHHHHcCCcccC
Confidence 467889999999998776654 23 4444555554321 113444445778899
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 8864
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.074 Score=37.30 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=38.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+.+|||+|......|.+ .+ +..-.++++.+. ....++.+..+...+|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~--i~y~~~dv~~~~--------------------~~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KG--IPYEEVDVDEDE--------------------EAREELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TT--BEEEEEEGGGSH--------------------HHHHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cC--CeeeEcccccch--------------------hHHHHHHHHcCCCccC
Confidence 467889999999998877632 44 555556665442 2235666666999999
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.048 Score=41.37 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=30.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~ 78 (399)
++.|+.+|||+|.+....|+++..++ .+ +.+..|+++.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~--i~~~~idi~~~ 41 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DD--FDYRYVDIHAE 41 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cC--CcEEEEECCCC
Confidence 57789999999999999999988764 23 56666666543
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.055 Score=47.10 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+...|++.||-+.-..|+-+-..|+.|++.+- +..++-|++... +-
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-----------eTrFikvnae~~-----------------------PF 128 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-----------ETRFIKVNAEKA-----------------------PF 128 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcc-----------cceEEEEecccC-----------------------ce
Confidence 45679999999999999999999999988764 345666665533 56
Q ss_pred HHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHH
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 323 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 323 (399)
+...++|..+|++.++ ++|+.+.+..|.. ..|... .|+.+.++.
T Consensus 129 lv~kL~IkVLP~v~l~-k~g~~~D~iVGF~--dLGnkD-dF~te~LE~ 172 (211)
T KOG1672|consen 129 LVTKLNIKVLPTVALF-KNGKTVDYVVGFT--DLGNKD-DFTTETLEN 172 (211)
T ss_pred eeeeeeeeEeeeEEEE-EcCEEEEEEeeHh--hcCCCC-cCcHHHHHH
Confidence 7889999999999999 9999887755543 455433 456655543
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.044 Score=43.87 Aligned_cols=71 Identities=20% Similarity=0.366 Sum_probs=46.6
Q ss_pred CcEEEEEEec--------CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 197 GKTVGLYFSA--------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 197 gk~vll~F~a--------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
|+.+.++|.+ +|||.|.+-.|.+.+..+.... ++.+|-|.+.. .+.|+
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~----------~~~~v~v~VG~-rp~Wk------------- 80 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE----------DVHFVHVYVGN-RPYWK------------- 80 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC----------ceEEEEEEecC-CCccc-------------
Confidence 4456777764 5999999999998888775543 57777777652 21111
Q ss_pred CCchhHHHHHhCCC-CccceEEEECC
Q 015833 269 GDPTIKELTKYFDV-QGIPCLVIIGP 293 (399)
Q Consensus 269 ~~d~~~~~~~~~~v-~~~P~~~lid~ 293 (399)
|.+..+....++ .++||++=.+.
T Consensus 81 --~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 81 --DPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred --CCCCccccCCCceeecceeeEEcC
Confidence 122344444555 89999988864
|
|
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.086 Score=46.83 Aligned_cols=118 Identities=19% Similarity=0.306 Sum_probs=79.3
Q ss_pred cccccCCeEEecCCCCEEecccc-CCC--EEEEEEe-----cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDL-EGK--VTALYFS-----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~-~gk--~vlv~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
.+....++.+...+|+ ++|.|+ .|+ .++-.|. ...|+-|...+-.+......+...+ +.++.||-. ..
T Consensus 42 ~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~ 117 (211)
T PF05988_consen 42 MVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PL 117 (211)
T ss_pred CccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CH
Confidence 3455567888888887 999986 665 4444443 3569999999999988788887775 777777654 45
Q ss_pred HHHHHhHhcCCCcccccCChHHHHHHHhhcCC-----CCcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWLAVPYSDLETKKALNRKFDI-----EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v-----~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+..|.+.|+|...=+|... ..+...|++ ...|.+-++-+ .+|+|.+..
T Consensus 118 ~~i~afk~rmGW~~pw~Ss~g--s~Fn~D~~~~~~~~~~~~g~svF~R--dg~~VfhTy 172 (211)
T PF05988_consen 118 EKIEAFKRRMGWTFPWYSSYG--SDFNYDFGVSFDEGGEMPGLSVFLR--DGGRVFHTY 172 (211)
T ss_pred HHHHHHHHhcCCCceEEEcCC--CcccccccceeccCCCceeEEEEEE--cCCEEEEEe
Confidence 788899999998732232221 456667777 45665555544 156666543
|
|
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.22 Score=46.14 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=78.2
Q ss_pred CCCCccc-CCCCCceeeccc-cCCcEEEEEEecC-CChhhhhhHHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 015833 176 HDRGYLL-GHPPDEKVPVSS-LVGKTVGLYFSAR-WCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 251 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~-~~gk~vll~F~a~-wC~~C~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 251 (399)
..|++.- +.+|+ .+++.+ ++||+.||..+.+ |-..|. ..+. ...++|... .+..+++|-|++..+.
T Consensus 100 yFP~l~g~tL~g~-~~~~~~~l~gkvSlV~l~s~~~ge~~~---~sw~~p~~~~~~~~------~~~~~q~v~In~~e~~ 169 (252)
T PF05176_consen 100 YFPNLQGKTLAGN-KVDTTDLLRGKVSLVCLFSSAWGEEMV---DSWTSPFLEDFLQE------PYGRVQIVEINLIENW 169 (252)
T ss_pred cCCCCccccCCCC-CcccccccCCceEEEEEeehHHHHHHH---HHHhhHHHHHHhhC------CCCceEEEEEecchHH
Confidence 3588887 88888 777755 6899755555543 433332 2222 233444432 0127899999986432
Q ss_pred H-HH-HHHH-hc-------CCCcccccCCc--hhHHHHHhCCCC--ccceEEEECCCCcEEecccchhhhhhcccCCCCC
Q 015833 252 T-SF-ESYF-GT-------MPWLALPFGDP--TIKELTKYFDVQ--GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 317 (399)
Q Consensus 252 ~-~~-~~~~-~~-------~~~~~~p~~~d--~~~~~~~~~~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 317 (399)
- .+ ...+ .. ..|-.+-+..+ ....+.+.+++. -+..+||+|.+|+|+....| +.+
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG-----------~At 238 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSG-----------PAT 238 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccC-----------CCC
Confidence 1 11 1111 11 11333323332 256777888874 45669999999999988544 347
Q ss_pred hHHHHHHHHHHH
Q 015833 318 EAKLEFLEKQME 329 (399)
Q Consensus 318 ~~~~~~l~~~~~ 329 (399)
++.++.|.+.+.
T Consensus 239 ~~E~~~L~k~~~ 250 (252)
T PF05176_consen 239 PEELESLWKCVK 250 (252)
T ss_pred HHHHHHHHHHHh
Confidence 778888877664
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.0064 Score=54.36 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=53.0
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
.++.|+++|||.|....|.|...+.--.+. ++.+..|.+-.+ .-+.-+
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL---------~v~va~VDvt~n-----------------------pgLsGR 89 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDL---------GVKVAKVDVTTN-----------------------PGLSGR 89 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCC---------ceeEEEEEEEec-----------------------ccccee
Confidence 678999999999999999998776543332 556665554433 456677
Q ss_pred CCCCccceEEEECCCCcEEeccc
Q 015833 280 FDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
|-+...|+++=+ ++|......|
T Consensus 90 F~vtaLptIYHv-kDGeFrrysg 111 (248)
T KOG0913|consen 90 FLVTALPTIYHV-KDGEFRRYSG 111 (248)
T ss_pred eEEEecceEEEe-eccccccccC
Confidence 888999999999 9998875544
|
|
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.16 Score=36.24 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|.++||++|+.....|.+. ++.+..++++.+.+. ...+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----------------~i~~~~~di~~~~~~-------------------~~~l~~~~ 46 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----------------GIEFEEIDILEDGEL-------------------REELKELS 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 4568899999999877766643 345666666655421 24455566
Q ss_pred CCCccceEEEECCCCcEEe
Q 015833 281 DVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~~ 299 (399)
+...+|++++ +|+.+.
T Consensus 47 ~~~~~P~~~~---~~~~ig 62 (72)
T cd02066 47 GWPTVPQIFI---NGEFIG 62 (72)
T ss_pred CCCCcCEEEE---CCEEEe
Confidence 7788897754 565554
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.054 Score=41.32 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=18.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHH
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQ 224 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~ 224 (399)
++.|..+|||+|.+....|.++..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~ 25 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAI 25 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCc
Confidence 466788999999988777766543
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.1 Score=38.98 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=39.3
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 278 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~ 278 (399)
.-++.|..+||++|......|.+ . ++.+..+.++.+.. ..++.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~-------~---------gi~y~~idi~~~~~--------------------~~~~~~ 51 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKE-------K---------GYDFEEIPLGNDAR--------------------GRSLRA 51 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHH-------c---------CCCcEEEECCCChH--------------------HHHHHH
Confidence 34667889999999987666542 2 34555566664432 134455
Q ss_pred hCCCCccceEEEECCCCcEE
Q 015833 279 YFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 279 ~~~v~~~P~~~lid~~G~i~ 298 (399)
..|...+|.++ + +|+.+
T Consensus 52 ~~g~~~vP~i~-i--~g~~i 68 (79)
T TIGR02190 52 VTGATTVPQVF-I--GGKLI 68 (79)
T ss_pred HHCCCCcCeEE-E--CCEEE
Confidence 67889999986 4 45543
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.02 Score=51.08 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=52.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++.+++.||++||.+|..+...+..+++.++ +++++.+ +.+...+++..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~------------------------~a~~~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKL------------------------EAEEFPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeee------------------------hhhhhhHHHHHHH
Confidence 78899999999999999999999999888873 3666655 3333388999999
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
+...|.+.++.
T Consensus 68 v~~vp~~~~~~ 78 (227)
T KOG0911|consen 68 VEAVPYFVFFF 78 (227)
T ss_pred HhcCceeeeee
Confidence 99999999885
|
|
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.53 Score=39.90 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=70.3
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHH-HHhhhhhcCCCCCCEEEEEE-ecCCC----HHHHHHHH----
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQK-IKQNLVEKGDALEDFEVVFV-STDRD----QTSFESYF---- 258 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~vv~i-s~d~~----~~~~~~~~---- 258 (399)
.++.+.+.||+-+|...|-....=....|....+.+. |... .++...| +.|.. .-=++..+
T Consensus 29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d---------~yqtttIiN~dDAi~gt~~fVrss~e~~k 99 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD---------KYQTTTIINLDDAIWGTGGFVRSSAEDSK 99 (160)
T ss_pred ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc---------ceeEEEEEecccccccchHHHHHHHHHhh
Confidence 4566678899988877765444433444555555443 4432 4665554 45431 11123333
Q ss_pred hcCCCcccccCCchhHHHHHhCCCCcc-ceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHH
Q 015833 259 GTMPWLALPFGDPTIKELTKYFDVQGI-PCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQME 329 (399)
Q Consensus 259 ~~~~~~~~p~~~d~~~~~~~~~~v~~~-P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~ 329 (399)
++.||-.+ ..|.+..+.+.|+...- -.++++|++|+|++..-+ ..+++.++.....++
T Consensus 100 k~~p~s~~--vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G-----------~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 100 KEFPWSQF--VLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEG-----------ALSPAEVQQVIALLK 158 (160)
T ss_pred hhCCCcEE--EEcCCCceeccccCCCCCceEEEEcCCccEEEEECC-----------CCCHHHHHHHHHHHh
Confidence 34555444 34555677888887533 468899999999987544 457777776665554
|
|
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.067 Score=42.77 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=37.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|.+....|.+.-- ...+++++-|+-..+ +.....++.+..|-..+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i----~~~~~~~i~i~~~~~-------------------~~~~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSF----KRGAYEIVDIKEFKP-------------------ENELRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCC----CcCCcEEEECCCCCC-------------------CHHHHHHHHHHcCCCCcC
Confidence 567889999999987776655311 111355554431111 222346777777888899
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
.+++
T Consensus 72 ~IfI 75 (108)
T PHA03050 72 RIFF 75 (108)
T ss_pred EEEE
Confidence 9854
|
|
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.11 Score=44.20 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=39.7
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
+.+-.-.++++++.|+...||+|..+.+.+.++.+++-+.| ++.++.+.+
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 45566678999999999999999999999999999984443 588887755
|
... |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.44 Score=35.83 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=34.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..+||++|......|.+ + ++.+-.|.++.+.+. .+..+..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~---------gI~~~~idi~~~~~~--------------------~~~~~~~ 46 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R---------GFDFEMINVDRVPEA--------------------AETLRAQ 46 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C---------CCceEEEECCCCHHH--------------------HHHHHHc
Confidence 456778999999986655532 2 566666777755432 1122334
Q ss_pred CCCccceEEE
Q 015833 281 DVQGIPCLVI 290 (399)
Q Consensus 281 ~v~~~P~~~l 290 (399)
|...+|++++
T Consensus 47 g~~~vPvv~i 56 (81)
T PRK10329 47 GFRQLPVVIA 56 (81)
T ss_pred CCCCcCEEEE
Confidence 7789999854
|
|
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.13 Score=40.47 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=15.2
Q ss_pred EEEEecCCChhhhhhHHHHH
Q 015833 201 GLYFSARWCIPCEKFMPKLL 220 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~ 220 (399)
++.|..+|||+|.+....|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~ 29 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLL 29 (99)
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 55688899999997665444
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.06 Score=45.21 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEE
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 73 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~V 73 (399)
+++++++.|+.++||+|+.+.|.+.++...+. ++.++.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEE
Confidence 47899999999999999999999998776642 2555544
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd02249 ZZ Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.023 Score=37.85 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=29.3
Q ss_pred eecCCCCCCCCceeEEcCCCC-CCCcCccccccC
Q 015833 360 FICCDCDEQGSGWAYQCLECG-YEVHPKCVRAVD 392 (399)
Q Consensus 360 ~~c~~C~~~~~~w~~~c~~c~-~~~~~~~~~~~~ 392 (399)
+.|+.|.+.-.+=+|+|.+|. |||...|.....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 469999998888999999998 999999987653
|
Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.057 Score=43.16 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.4
Q ss_pred EEEEecCCChhhhhhHHHHHH
Q 015833 201 GLYFSARWCIPCEKFMPKLLS 221 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~ 221 (399)
++.|..+|||+|......|.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNK 35 (108)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 567889999999876665554
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.099 Score=46.37 Aligned_cols=93 Identities=18% Similarity=0.371 Sum_probs=68.2
Q ss_pred CCCccc-CCCCCceeecccc-CCcE--EEE-EEecC----CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 177 DRGYLL-GHPPDEKVPVSSL-VGKT--VGL-YFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~-~gk~--vll-~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.-++.+ +.+|+ .+|.++ .|+- +|- ++++| -|+.|..++..+.-....+... ++.++.||-
T Consensus 52 ~K~Y~Fe~~~G~--~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~---------dv~lv~VsR 120 (247)
T COG4312 52 DKDYVFETENGK--KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH---------DVTLVAVSR 120 (247)
T ss_pred cceeEeecCCcc--hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc---------CceEEEEec
Confidence 455667 66664 788875 4553 222 23355 4999999999988777777654 788999985
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC
Q 015833 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 282 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v 282 (399)
- ..+++..+-+.|+|- ||..+.....+.+.|.+
T Consensus 121 A-Pl~~l~~~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 121 A-PLEELVAYKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred C-cHHHHHHHHHhcCCc-ceeEeccCccccccccc
Confidence 4 678889999999997 98888877777777765
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.17 Score=37.83 Aligned_cols=56 Identities=14% Similarity=0.324 Sum_probs=36.1
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
.-++.|..+||++|++....|.+ .| +....++++.+.+. .++.+..+...
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~~---------------------~~~~~~~g~~~ 57 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDARG---------------------RSLRAVTGATT 57 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChHH---------------------HHHHHHHCCCC
Confidence 34567889999999998887753 33 33444555433111 34555678889
Q ss_pred cCeEEE
Q 015833 114 IPCLVV 119 (399)
Q Consensus 114 ~P~~~l 119 (399)
+|.+++
T Consensus 58 vP~i~i 63 (79)
T TIGR02190 58 VPQVFI 63 (79)
T ss_pred cCeEEE
Confidence 998863
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.23 Score=36.28 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=36.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..++||+|......|++ . ++.+-.+.++.+.+.. .++.+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------K---------GVDYEEIDVDGDPALR-------------------EEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------C---------CCcEEEEECCCCHHHH-------------------HHHHHHh
Confidence 456788999999987666543 2 3555666666553322 3344455
Q ss_pred CCC-ccceEEEECCCCcEE
Q 015833 281 DVQ-GIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~-~~P~~~lid~~G~i~ 298 (399)
+.. .+|.+ ++ +|+.+
T Consensus 47 ~~~~~vP~v-~i--~g~~i 62 (75)
T cd03418 47 GGRRTVPQI-FI--GDVHI 62 (75)
T ss_pred CCCCccCEE-EE--CCEEE
Confidence 655 88976 45 35544
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.17 Score=37.62 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=36.6
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCC
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 281 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~ 281 (399)
..|+.+|||+|......|++ . ++.+-.++++.+.+.. .++.+..|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~---------~i~~~~~di~~~~~~~-------------------~~~~~~~g 46 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------K---------GVTFTEIRVDGDPALR-------------------DEMMQRSG 46 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------c---------CCCcEEEEecCCHHHH-------------------HHHHHHhC
Confidence 46788999999987766653 1 3444445555543221 34555567
Q ss_pred CCccceEEEECCCCcEE
Q 015833 282 VQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 282 v~~~P~~~lid~~G~i~ 298 (399)
...+|++ ++ +|+.+
T Consensus 47 ~~~vP~i-~i--~g~~i 60 (79)
T TIGR02181 47 RRTVPQI-FI--GDVHV 60 (79)
T ss_pred CCCcCEE-EE--CCEEE
Confidence 8899997 44 35443
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.22 Score=39.04 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=34.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|.+....|.+. +.++.+ +++|.+.+. ......+.+..+...+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~--vdid~~~~~-----------------~~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAV--HEIDKEPAG-----------------KDIENALSRLGCSPAVP 63 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEE--EEcCCCccH-----------------HHHHHHHHHhcCCCCcC
Confidence 4567889999999877765542 323444 445433211 11224555666778899
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 64 ~Vf 66 (99)
T TIGR02189 64 AVF 66 (99)
T ss_pred eEE
Confidence 874
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.1 Score=43.78 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=26.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKI 226 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~ 226 (399)
++++++.|+.++||+|..+.|.+.++..++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 678999999999999999999998877655
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.39 Score=37.98 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=50.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+.++++|+=..+.||...+-...+++.++...+. +.+.++.+=. .-.....++++||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~--------------------~R~vSn~IAe~~~ 74 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIE--------------------YRPVSNAIAEDFG 74 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGG--------------------GHHHHHHHHHHHT
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEe--------------------CchhHHHHHHHhC
Confidence 4689988888999999999988898888886543 5555554321 2223489999999
Q ss_pred CCC-cCeEEEEcCCCCCCCeeecc
Q 015833 111 IEG-IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 111 v~~-~P~~~lid~~~~~G~i~~~~ 133 (399)
|.+ -|.+++|. +|+++...
T Consensus 75 V~HeSPQ~ili~----~g~~v~~a 94 (105)
T PF11009_consen 75 VKHESPQVILIK----NGKVVWHA 94 (105)
T ss_dssp ----SSEEEEEE----TTEEEEEE
T ss_pred CCcCCCcEEEEE----CCEEEEEC
Confidence 986 79999998 89888653
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.16 Score=47.32 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=50.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+-.|+|+||-+.++.|..+...|..|+.+|.. +.++.|..... . +...|..
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~------------------------~-~~~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC------------------------P-ASENFPD 196 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC------------------------C-TTTTS-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc------------------------C-cccCCcc
Confidence 45899999999999999999999999999965 56666644211 1 3456888
Q ss_pred CCcCeEEEEcCCCCCCCeeec
Q 015833 112 EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~ 132 (399)
...|+++++. +|.++..
T Consensus 197 ~~LPtllvYk----~G~l~~~ 213 (265)
T PF02114_consen 197 KNLPTLLVYK----NGDLIGN 213 (265)
T ss_dssp TC-SEEEEEE----TTEEEEE
T ss_pred cCCCEEEEEE----CCEEEEe
Confidence 9999999998 7877754
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.27 Score=35.82 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=37.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|..+|||+|.+....|.+ . ++.+..++++.+.+ ...+.+..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~---------~i~~~~~~v~~~~~--------------------~~~~~~~~ 46 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------N---------GISYEEIPLGKDIT--------------------GRSLRAVT 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c---------CCCcEEEECCCChh--------------------HHHHHHHh
Confidence 456788999999987655542 2 34555566664431 13455556
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|...+|.+ ++| |+.+
T Consensus 47 g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 47 GAMTVPQV-FID--GELI 61 (72)
T ss_pred CCCCcCeE-EEC--CEEE
Confidence 88999997 563 5544
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.0093 Score=53.37 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=51.4
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
-.++.|+|+|||.|....|.|...+.--.+-+ +.+..|.+ ..+.-|.-+|-+..
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDv------------------------t~npgLsGRF~vta 94 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDV------------------------TTNPGLSGRFLVTA 94 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEE------------------------EeccccceeeEEEe
Confidence 44789999999999999999998877765544 66666633 22255666788889
Q ss_pred cCeEEEEcCCCCCCCeeec
Q 015833 114 IPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 114 ~P~~~lid~~~~~G~i~~~ 132 (399)
.|++|=+. +|.....
T Consensus 95 LptIYHvk----DGeFrry 109 (248)
T KOG0913|consen 95 LPTIYHVK----DGEFRRY 109 (248)
T ss_pred cceEEEee----ccccccc
Confidence 99999886 6665533
|
|
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.16 Score=38.63 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=25.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
++.|..+|||+|......|.++..+.. + +.+..++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECC
Confidence 567889999999998888777543321 2 445555554
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.37 Score=43.52 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=76.1
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCC-cEEEEEEecCCChHHH--HHhH
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS-DFEVVFVSSDEDLNAF--NNYR 86 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~-~~~ii~Vs~D~~~~~~--~~~~ 86 (399)
+.+|.+++-+ .-...+..|+++||-+-..+|..|...+..|..|..++...|- ++.++.|+--...... ....
T Consensus 8 ~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~ 83 (238)
T PF04592_consen 8 KPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELK 83 (238)
T ss_pred CCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHH
Confidence 4567776633 3557788999999999999999999999999999999988773 6777777753222222 2222
Q ss_pred hcCCCcccccC-ChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 87 ACMPWLAVPYS-DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 87 ~~~~~~~~~~~-d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
...+ ..+|.. .......++..++-. ---++|+|+ =|++++.
T Consensus 84 ~r~~-~~ipVyqq~~~q~dvW~~L~G~-kdD~~iyDR---CGrL~~~ 125 (238)
T PF04592_consen 84 RRVS-EHIPVYQQDENQPDVWELLNGS-KDDFLIYDR---CGRLTYH 125 (238)
T ss_pred HhCC-CCCceecCCccccCHHHHhCCC-cCcEEEEec---cCcEEEE
Confidence 3333 123322 222336677776643 345788888 8888866
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.26 Score=41.81 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=38.6
Q ss_pred eeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 190 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
+.+..-.++++|+.|+...||+|..+.+.+.++.+++-+. ..+.++...+
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~--------~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP--------GKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC--------CceEEEEEEc
Confidence 4455556789999999999999999999999999998322 2588888876
|
... |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.25 Score=35.21 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=34.9
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|.++|||+|+.....|.+. + +.+..++++.+.+ ....+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~--------------------~~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGE--------------------LREELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 4567899999999998877753 2 3444555543321 225555666777888
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 53 ~~~ 55 (72)
T cd02066 53 QIF 55 (72)
T ss_pred EEE
Confidence 764
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.46 Score=34.65 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=37.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|..+||+.|++....|++ . ++.+..+.++.+.+. ..++.+..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~---------gi~~~~~di~~~~~~-------------------~~el~~~~ 47 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K---------GLPYVEINIDIFPER-------------------KAELEERT 47 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHHHHHh
Confidence 456778999999987665553 2 455666677654422 24556666
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
+-..+|.+ ++| |+.+
T Consensus 48 g~~~vP~v-~i~--~~~i 62 (73)
T cd03027 48 GSSVVPQI-FFN--EKLV 62 (73)
T ss_pred CCCCcCEE-EEC--CEEE
Confidence 66788887 453 4444
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.44 Score=34.63 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=33.8
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|.+....|++ .+ +.+..++++.+.+ ...+.+..+...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~---------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT---------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh---------------------HHHHHHHhCCCCcC
Confidence 466789999999998776663 23 4444445543311 13455556888899
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 53 ~if 55 (72)
T cd03029 53 QVF 55 (72)
T ss_pred eEE
Confidence 874
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.51 Score=34.37 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=33.5
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCC
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 281 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~ 281 (399)
..|..++||+|......|.+ . ++.+-.+.++.+.+.. ..+. ..|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~~di~~~~~~~-------------------~~~~-~~g 45 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H---------GIAFEEINIDEQPEAI-------------------DYVK-AQG 45 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHHH-HcC
Confidence 45678999999987766653 2 4556666776554321 2222 347
Q ss_pred CCccceEEE
Q 015833 282 VQGIPCLVI 290 (399)
Q Consensus 282 v~~~P~~~l 290 (399)
...+|.+++
T Consensus 46 ~~~vP~v~~ 54 (72)
T TIGR02194 46 FRQVPVIVA 54 (72)
T ss_pred CcccCEEEE
Confidence 789999744
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.77 Score=37.21 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
.|.|+|-|.-.|-|.|.++-..|.++.+...+- ..|.-+.+|.. +.+
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf----------a~IylvdideV-----------------------~~~ 69 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF----------AVIYLVDIDEV-----------------------PDF 69 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc----------eEEEEEecchh-----------------------hhh
Confidence 478999999999999999999999999888743 34444555533 678
Q ss_pred HHhCCCCccceEEE-ECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVI-IGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~l-id~~G~i~~~ 300 (399)
-+.|++...|++++ ++....-+..
T Consensus 70 ~~~~~l~~p~tvmfFfn~kHmkiD~ 94 (142)
T KOG3414|consen 70 VKMYELYDPPTVMFFFNNKHMKIDL 94 (142)
T ss_pred hhhhcccCCceEEEEEcCceEEEee
Confidence 88899999997654 4444444443
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.72 Score=36.48 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
.++++|+=-++.||....-...+++.++...+ ++.+..+.+-... +....+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~----------~~~~y~l~v~~~R-------------------~vSn~I 69 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPD----------EIPVYYLDVIEYR-------------------PVSNAI 69 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------------EEEEEGGGGH-------------------HHHHHH
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc----------cceEEEEEEEeCc-------------------hhHHHH
Confidence 46777777788999999988888887776543 2677777764332 124789
Q ss_pred HHhCCCC-ccceEEEECCCCcEEeccc
Q 015833 277 TKYFDVQ-GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 277 ~~~~~v~-~~P~~~lid~~G~i~~~~~ 302 (399)
++.|||. .-|-++|| ++|+++....
T Consensus 70 Ae~~~V~HeSPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 70 AEDFGVKHESPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp HHHHT----SSEEEEE-ETTEEEEEEE
T ss_pred HHHhCCCcCCCcEEEE-ECCEEEEECc
Confidence 9999996 57999999 9999997643
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.29 Score=50.48 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=45.5
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
++++.-+..|..++||+|+.....+++++..- +++..-.| |.....++..+|
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~i------------------------d~~~~~~~~~~~ 165 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMI------------------------DGALFQDEVEAR 165 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEE------------------------EchhCHhHHHhc
Confidence 34556688889999999999888888777652 23554444 222338888999
Q ss_pred CCCCcCeEEE
Q 015833 110 DIEGIPCLVV 119 (399)
Q Consensus 110 ~v~~~P~~~l 119 (399)
++.++|++++
T Consensus 166 ~v~~VP~~~i 175 (517)
T PRK15317 166 NIMAVPTVFL 175 (517)
T ss_pred CCcccCEEEE
Confidence 9999999975
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.62 Score=35.03 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=23.3
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~ 78 (399)
+..|..+||++|......|.+ .| +.+-.++++.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~ 36 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRV 36 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCC
Confidence 456789999999998777643 44 44555566544
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.27 Score=36.47 Aligned_cols=53 Identities=15% Similarity=0.360 Sum_probs=33.7
Q ss_pred EEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCe
Q 015833 37 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC 116 (399)
Q Consensus 37 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~ 116 (399)
..|+.+|||+|......|++ .+-+++.+ +++.+.+ ...++.+..+...+|.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~--di~~~~~--------------------~~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEI--RVDGDPA--------------------LRDEMMQRSGRRTVPQ 52 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEE--EecCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 56789999999998887764 23234444 4443321 2245555667788898
Q ss_pred EE
Q 015833 117 LV 118 (399)
Q Consensus 117 ~~ 118 (399)
++
T Consensus 53 i~ 54 (79)
T TIGR02181 53 IF 54 (79)
T ss_pred EE
Confidence 74
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.14 E-value=2.1 Score=40.34 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=60.6
Q ss_pred eeccccCCcEEEEEEecC----CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 015833 190 VPVSSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 265 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 265 (399)
+.....++=.+++.|.|. .|.-|+.+..++.-+++.+... .+..++-++.+-.+|-++
T Consensus 53 ~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~----~~~sn~tklFF~~Vd~~e-------------- 114 (331)
T KOG2603|consen 53 FVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYN----SPFSNGTKLFFCMVDYDE-------------- 114 (331)
T ss_pred hccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhcc----CCCCCcceEEEEEEeccc--------------
Confidence 333444555678888875 5999999999999999988754 112344567777777543
Q ss_pred cccCCchhHHHHHhCCCCccceEEEECCC-CcEE
Q 015833 266 LPFGDPTIKELTKYFDVQGIPCLVIIGPE-GKTV 298 (399)
Q Consensus 266 ~p~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~ 298 (399)
..++.+.++++..|+++++.|. |+..
T Consensus 115 -------~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 -------SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred -------cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 3788999999999999999654 5555
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.58 Score=39.18 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=71.9
Q ss_pred cccccccCCeEEecC------CCC-EEecccc-CCCEEEEEEe--cCCCcccHh-hHHHHHHHHHHHhcCCCcE-EEEEE
Q 015833 6 WYVQQLRRRMTSTKE------IGE-EVKVSDL-EGKVTALYFS--ANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVVFV 73 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~------~G~-~v~l~~~-~gk~vlv~F~--a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~ii~V 73 (399)
..+|+..|..+++.. .|. .++..++ +||.|+| |. +..-|.|.. .+|.+.+++++++.+| + +|+.|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kG--VD~I~cV 79 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKG--VDEIYCV 79 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcC--CceEEEE
Confidence 456888888777654 343 3555664 7887655 44 444677877 7999999999999887 4 67777
Q ss_pred ecCCCh--HHHHHhHhcC-CCcccccCChHHHHHHHhh-------cCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 74 SSDEDL--NAFNNYRACM-PWLAVPYSDLETKKALNRK-------FDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 74 s~D~~~--~~~~~~~~~~-~~~~~~~~d~~~~~~l~~~-------~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
|++..- .+|.+..... +...++....+-.+.+... ||+++.....+++ ||.+..-.
T Consensus 80 SVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~----nGvV~~~~ 145 (165)
T COG0678 80 SVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVE----NGVVEKLF 145 (165)
T ss_pred EeCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEEe----CCeEEEEE
Confidence 776431 2333333322 3445554333211222111 3456666677776 77776554
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.63 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=22.7
Q ss_pred EEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 015833 37 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78 (399)
Q Consensus 37 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~ 78 (399)
..|..++||+|+.....|++ .| +.+-.++++.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~ 34 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQ 34 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCC
Confidence 45778999999998887764 33 44445555544
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.69 Score=37.10 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC
Q 015833 219 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 282 (399)
Q Consensus 219 l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v 282 (399)
|.+...++.+. ++++|.|.... .+..++|.+... .++|+..|++..+-+.+|+
T Consensus 2 L~~~~~~l~~~---------gv~lv~I~~g~-~~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAA---------GVKLVVIGCGS-PEGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHc---------CCeEEEEEcCC-HHHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 34455566554 78999999884 444888887655 4777888877777777766
|
|
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.47 Score=34.61 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=17.1
Q ss_pred EEEEecCCCcccHhhHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~ 56 (399)
++.|+.++||+|......|++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457789999999998877765
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >cd02335 ZZ_ADA2 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.12 Score=34.94 Aligned_cols=32 Identities=25% Similarity=0.705 Sum_probs=27.3
Q ss_pred eecCCCCCCCCc-eeEEcCCC-CCCCcCcccccc
Q 015833 360 FICCDCDEQGSG-WAYQCLEC-GYEVHPKCVRAV 391 (399)
Q Consensus 360 ~~c~~C~~~~~~-w~~~c~~c-~~~~~~~~~~~~ 391 (399)
|.|+.|.+.-.+ -+|+|.+| +|||=..|-...
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g 34 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAG 34 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCc
Confidence 469999988877 78999999 999999997653
|
Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.28 Score=50.88 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=51.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
.+|+++|....+||.+|..+..+- .++++-+.. .+|.|.||+++- |.....
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------------~FV~IKVDREER--------------PDvD~~ 95 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------------NFVPVKVDREER--------------PDVDSL 95 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------------CceeeeEChhhc--------------cCHHHH
Confidence 478999999999999999866431 123433332 388888887531 111111
Q ss_pred hHHHHHhC-CCCccceEEEECCCCcEEec
Q 015833 273 IKELTKYF-DVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~-~v~~~P~~~lid~~G~i~~~ 300 (399)
-..+++.. |--++|-++++-|+|+....
T Consensus 96 Ym~~~q~~tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 96 YMNASQAITGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred HHHHHHHhccCCCCceeEEECCCCceeee
Confidence 23344443 34589999999999998754
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.84 Score=35.60 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=36.4
Q ss_pred cEEEEEEe----cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 198 KTVGLYFS----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 198 k~vll~F~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
+.|+|+-. ++|||+|.+....|.++ ++.+..+.++.+.+ . .
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------------~i~~~~~di~~~~~-~------------------~ 56 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------------GVPFAYVNVLEDPE-I------------------R 56 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------------CCCEEEEECCCCHH-H------------------H
Confidence 34555543 38999999766555432 34455556654432 1 2
Q ss_pred HHHHHhCCCCccceEEEECCCCcEE
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
..+.+..|...+|.+| +| |+.+
T Consensus 57 ~~l~~~tg~~tvP~vf-i~--g~~i 78 (97)
T TIGR00365 57 QGIKEYSNWPTIPQLY-VK--GEFV 78 (97)
T ss_pred HHHHHHhCCCCCCEEE-EC--CEEE
Confidence 4455556778899885 53 5543
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.88 Score=34.85 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=36.9
Q ss_pred CcEEEEEEec----CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 197 GKTVGLYFSA----RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 197 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+++|+|+--. +|||+|......|.+. ++.+..+.++.+.+ .
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------------~i~y~~idv~~~~~-~------------------ 51 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------------GVDFGTFDILEDEE-V------------------ 51 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------------CCCeEEEEcCCCHH-H------------------
Confidence 4455554332 6999999766555442 23344445554422 1
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
...+.+..|-..+|.+ ++ +|+.+
T Consensus 52 ~~~l~~~~g~~tvP~v-fi--~g~~i 74 (90)
T cd03028 52 RQGLKEYSNWPTFPQL-YV--NGELV 74 (90)
T ss_pred HHHHHHHhCCCCCCEE-EE--CCEEE
Confidence 2456666688899997 44 35544
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.58 Score=34.13 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=34.8
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|+.....|.+ .+ +.+..++++.+.+ ...++.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~--------------------~~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPE--------------------RKAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 356778999999998877664 33 4444555543322 225566666667778
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
.+++
T Consensus 54 ~v~i 57 (73)
T cd03027 54 QIFF 57 (73)
T ss_pred EEEE
Confidence 7743
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.1 Score=34.42 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=37.2
Q ss_pred cCCCEEEEEEec----CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 30 LEGKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 30 ~~gk~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
++.++|+|+--. +|||+|......|.+. +.++..+ +++.+ .....++
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~i--dv~~~--------------------~~~~~~l 55 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTF--DILED--------------------EEVRQGL 55 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEE--EcCCC--------------------HHHHHHH
Confidence 345666665432 6999999977766552 3234444 43322 2233667
Q ss_pred HhhcCCCCcCeEEEEc
Q 015833 106 NRKFDIEGIPCLVVLQ 121 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid 121 (399)
.+..+-..+|.+ +++
T Consensus 56 ~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 56 KEYSNWPTFPQL-YVN 70 (90)
T ss_pred HHHhCCCCCCEE-EEC
Confidence 777788889987 444
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7 | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.087 Score=36.21 Aligned_cols=24 Identities=42% Similarity=1.086 Sum_probs=21.1
Q ss_pred eecCCCCC---CCCceeEEcCCCCCCC
Q 015833 360 FICCDCDE---QGSGWAYQCLECGYEV 383 (399)
Q Consensus 360 ~~c~~C~~---~~~~w~~~c~~c~~~~ 383 (399)
|+|++|.. +.++=..+|.+|+|++
T Consensus 21 YiCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 21 YICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred EEeccccccccccCCCcEehhhcchHH
Confidence 89999985 5678899999999986
|
0 [Transcription] |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.3 Score=42.24 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEE
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 73 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~V 73 (399)
++++.++.|+...||+|+.+.+.+.++.+++.+ ++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEc
Confidence 688999999999999999999999999888733 2555433
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.84 Score=34.22 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=41.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
|+.|..+.|+-|......|.++... ..+.+-.|+++.+ .++.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------------~~~~l~~vDI~~d-----------------------~~l~~~Y 46 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------------FPFELEEVDIDED-----------------------PELFEKY 46 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------------STCEEEEEETTTT-----------------------HHHHHHS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------------cCceEEEEECCCC-----------------------HHHHHHh
Confidence 5677889999999877776664332 2588999999855 5688899
Q ss_pred CCCccceEEEEC
Q 015833 281 DVQGIPCLVIIG 292 (399)
Q Consensus 281 ~v~~~P~~~lid 292 (399)
+. .+|.+.+-+
T Consensus 47 ~~-~IPVl~~~~ 57 (81)
T PF05768_consen 47 GY-RIPVLHIDG 57 (81)
T ss_dssp CT-STSEEEETT
T ss_pred cC-CCCEEEEcC
Confidence 95 799876654
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.1 Score=33.67 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=37.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..+||++|......|++ . ++....+.++.+.+. ..++.+..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~---------gi~y~~~dv~~~~~~-------------------~~~l~~~~ 48 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------K---------GVSFQEIPIDGDAAK-------------------REEMIKRS 48 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------c---------CCCcEEEECCCCHHH-------------------HHHHHHHh
Confidence 446678999999987665553 1 344455666644321 23455566
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|...+|+++ + +|+.+
T Consensus 49 g~~~vP~i~-~--~g~~i 63 (83)
T PRK10638 49 GRTTVPQIF-I--DAQHI 63 (83)
T ss_pred CCCCcCEEE-E--CCEEE
Confidence 788999774 4 46655
|
|
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.5 Score=35.63 Aligned_cols=65 Identities=18% Similarity=0.432 Sum_probs=51.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
..|.|+|-|.-.|-|.|..+-..|.++++...+- .+|.-+.+|+ -+.+.+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~Iylvdide------------------------V~~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDE------------------------VPDFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecch------------------------hhhhhhhhc
Confidence 5689999999999999999999999999998653 3344443331 267778899
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
+...|++.++-.
T Consensus 75 l~~p~tvmfFfn 86 (142)
T KOG3414|consen 75 LYDPPTVMFFFN 86 (142)
T ss_pred ccCCceEEEEEc
Confidence 999998888764
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.21 Score=34.04 Aligned_cols=35 Identities=31% Similarity=0.633 Sum_probs=27.3
Q ss_pred CCeecCCCCCCC---CceeEEcCCCCCCCcCccccccC
Q 015833 358 GPFICCDCDEQG---SGWAYQCLECGYEVHPKCVRAVD 392 (399)
Q Consensus 358 ~~~~c~~C~~~~---~~w~~~c~~c~~~~~~~~~~~~~ 392 (399)
.+-+|+.|++.= ..-.|+|..|++-+|.+|+....
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 467999999876 55678999999999999996643
|
Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A .... |
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.4 Score=33.01 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=16.1
Q ss_pred EEEEecCCCcccHhhHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLV 55 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~ 55 (399)
++.|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 46677899999999777666
|
|
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.61 Score=39.31 Aligned_cols=72 Identities=25% Similarity=0.366 Sum_probs=47.7
Q ss_pred cccccccccCC--eEEe-cCC----CCEEecccc-CCCEEEEEEe--cCCCcc-cHhhHHHHHHHHHHHhcCCCcEEEEE
Q 015833 4 SQWYVQQLRRR--MTST-KEI----GEEVKVSDL-EGKVTALYFS--ANWYPP-CGNFTGVLVDVYEELRNNGSDFEVVF 72 (399)
Q Consensus 4 ~~~~~~~~~p~--f~l~-d~~----G~~v~l~~~-~gk~vlv~F~--a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~ii~ 72 (399)
....+|...|+ .++- +.. |.+++++++ +||-++| |. +..-|. |+...|-+.+-+++++.+| --+|+.
T Consensus 7 a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKG-Vd~iic 84 (171)
T KOG0541|consen 7 APIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKG-VDEIIC 84 (171)
T ss_pred ccccccCccccccchhhccCccccccceEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcC-CcEEEE
Confidence 34567888888 4422 222 237888886 7866544 43 333454 7778999999999999887 226777
Q ss_pred EecCC
Q 015833 73 VSSDE 77 (399)
Q Consensus 73 Vs~D~ 77 (399)
|++|+
T Consensus 85 vSVnD 89 (171)
T KOG0541|consen 85 VSVND 89 (171)
T ss_pred EecCc
Confidence 88864
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.68 Score=47.72 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=44.8
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
+.++.-+..|..+.||+|+.....+++++.... ++..-.| |.....++..+|
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~i------------------------d~~~~~~~~~~~ 166 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMI------------------------DGALFQDEVEAL 166 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEE------------------------EchhCHHHHHhc
Confidence 455666888889999999987777777666522 3444333 333337888999
Q ss_pred CCCCcCeEEE
Q 015833 110 DIEGIPCLVV 119 (399)
Q Consensus 110 ~v~~~P~~~l 119 (399)
++.++|++++
T Consensus 167 ~v~~VP~~~i 176 (515)
T TIGR03140 167 GIQGVPAVFL 176 (515)
T ss_pred CCcccCEEEE
Confidence 9999999985
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=89.91 E-value=3 Score=33.78 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=52.1
Q ss_pred ccccCCcEEEEEEecC--CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 015833 192 VSSLVGKTVGLYFSAR--WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 269 (399)
Q Consensus 192 l~~~~gk~vll~F~a~--wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 269 (399)
|++++++.-+|..+|| .-+.-..+...|.+....+.++ ++.++.|.-+.... ..-+..
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---------di~v~~i~~~~~~~-----------~~~~~~ 62 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---------DIVVIVITGDGARS-----------PGKPLS 62 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---------ceEEEEEeCCcccc-----------ccCcCC
Confidence 5566675544444554 3344555666666655556554 66666664332211 001222
Q ss_pred CchhHHHHHhCCCC-ccceEEEECCCCcEEeccc
Q 015833 270 DPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 270 ~d~~~~~~~~~~v~-~~P~~~lid~~G~i~~~~~ 302 (399)
......+.+.|++. +.-+++||+++|.+..+..
T Consensus 63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~ 96 (118)
T PF13778_consen 63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWP 96 (118)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecC
Confidence 22356788888864 2347899999999988743
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.98 Score=40.25 Aligned_cols=94 Identities=20% Similarity=0.324 Sum_probs=63.8
Q ss_pred cCCeEEecCCCCEEecccc-CCC--EE-EEEEecC----CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 12 RRRMTSTKEIGEEVKVSDL-EGK--VT-ALYFSAN----WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 12 ~p~f~l~d~~G~~v~l~~~-~gk--~v-lv~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
..+..+-..+|+ .+|++| .|| .+ .=++++| .|+-|...+-.+......+...+ +.++.|+-- ..+.+.
T Consensus 52 ~K~Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~ 127 (247)
T COG4312 52 DKDYVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELV 127 (247)
T ss_pred cceeEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHH
Confidence 345666667774 889886 666 33 3334455 59999999999887777777665 888888654 457788
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
.+.+.|+|.+--++..+ ..+.+.|++
T Consensus 128 ~~k~rmGW~f~w~Ss~~--s~Fn~Df~v 153 (247)
T COG4312 128 AYKRRMGWQFPWVSSTD--SDFNRDFQV 153 (247)
T ss_pred HHHHhcCCcceeEeccC--ccccccccc
Confidence 89999998733333322 556666766
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.9 Score=32.22 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=15.1
Q ss_pred EEEEecCCChhhhhhHHHHH
Q 015833 201 GLYFSARWCIPCEKFMPKLL 220 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~ 220 (399)
+..|..++||+|......|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677889999998665555
|
|
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=89.30 E-value=2.6 Score=34.78 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC--ccceEEEE
Q 015833 214 KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ--GIPCLVII 291 (399)
Q Consensus 214 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~--~~P~~~li 291 (399)
.....|.+++++|+++ .+.++++..+.. ..+.+.||+. .+|+++++
T Consensus 41 ~~~~~l~~vAk~~kgk---------~i~Fv~vd~~~~-----------------------~~~~~~fgl~~~~~P~v~i~ 88 (130)
T cd02983 41 KYLEILKSVAEKFKKK---------PWGWLWTEAGAQ-----------------------LDLEEALNIGGFGYPAMVAI 88 (130)
T ss_pred HHHHHHHHHHHHhcCC---------cEEEEEEeCccc-----------------------HHHHHHcCCCccCCCEEEEE
Confidence 3567788888888754 467777776644 4488899985 59999999
Q ss_pred CCCCc
Q 015833 292 GPEGK 296 (399)
Q Consensus 292 d~~G~ 296 (399)
+.++.
T Consensus 89 ~~~~~ 93 (130)
T cd02983 89 NFRKM 93 (130)
T ss_pred ecccC
Confidence 88764
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=88.92 E-value=5.6 Score=32.71 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=46.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+.|.|+|-|.-.|-+.|..+-..|.+++++.++- ..|..|++++- +.+.+.|.
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V------------------------pdfn~~ye 71 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV------------------------PDFNQMYE 71 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT------------------------HCCHHHTT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc------------------------hhhhcccc
Confidence 5799999999999999999999999999998753 55555555422 45567788
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
+. .|..+++-
T Consensus 72 l~-dP~tvmFF 81 (133)
T PF02966_consen 72 LY-DPCTVMFF 81 (133)
T ss_dssp S--SSEEEEEE
T ss_pred cC-CCeEEEEE
Confidence 87 77655554
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=88.89 E-value=1.1 Score=34.85 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=35.7
Q ss_pred CCCEEEEEEe----cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 31 EGKVTALYFS----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 31 ~gk~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+.+.|+|+-. ++|||+|.+....|.+ .+ +....++++.+. ....++.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~--i~~~~~di~~~~--------------------~~~~~l~ 60 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CG--VPFAYVNVLEDP--------------------EIRQGIK 60 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cC--CCEEEEECCCCH--------------------HHHHHHH
Confidence 4456666544 3899999998776655 23 333344444331 2225566
Q ss_pred hhcCCCCcCeEEE
Q 015833 107 RKFDIEGIPCLVV 119 (399)
Q Consensus 107 ~~~~v~~~P~~~l 119 (399)
+..+-..+|.+++
T Consensus 61 ~~tg~~tvP~vfi 73 (97)
T TIGR00365 61 EYSNWPTIPQLYV 73 (97)
T ss_pred HHhCCCCCCEEEE
Confidence 6667778888763
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.6 Score=34.61 Aligned_cols=58 Identities=21% Similarity=0.414 Sum_probs=43.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
.|.|+|-|.-.|-+.|.++-..|.+++++.++- ..|..|.++.. +.+
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~----------a~IY~vDi~~V-----------------------pdf 66 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF----------AVIYLVDIDEV-----------------------PDF 66 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTT-----------------------HCC
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc----------eEEEEEEcccc-----------------------hhh
Confidence 589999999999999999999999999888743 45666666643 456
Q ss_pred HHhCCCCccceE
Q 015833 277 TKYFDVQGIPCL 288 (399)
Q Consensus 277 ~~~~~v~~~P~~ 288 (399)
.+.|.+. .|.+
T Consensus 67 n~~yel~-dP~t 77 (133)
T PF02966_consen 67 NQMYELY-DPCT 77 (133)
T ss_dssp HHHTTS--SSEE
T ss_pred hcccccC-CCeE
Confidence 7788887 6743
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >cd00029 C1 Protein kinase C conserved region 1 (C1) | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.26 Score=32.96 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=29.1
Q ss_pred CCeecCCCCCCCCc---eeEEcCCCCCCCcCccccccC
Q 015833 358 GPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD 392 (399)
Q Consensus 358 ~~~~c~~C~~~~~~---w~~~c~~c~~~~~~~~~~~~~ 392 (399)
.+..|..|.+.=.+ ..|.|..|++-.|.+|+....
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 35689999877664 889999999999999997654
|
Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). |
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.5 Score=33.45 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=15.3
Q ss_pred EEEEecCCCcccHhhHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~ 56 (399)
+|.|..+||++|.+...-|.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh
Confidence 366889999999995444443
|
|
| >cd02343 ZZ_EF Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.24 Score=33.13 Aligned_cols=30 Identities=30% Similarity=0.783 Sum_probs=25.2
Q ss_pred ecCCCCCCCCceeEEcCCC-CCCCcCccccc
Q 015833 361 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 361 ~c~~C~~~~~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.|+.|.+.-++-+|.|.+| ||||=..|-..
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 5999999999999999999 68887777543
|
Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.85 Score=36.83 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=18.8
Q ss_pred CCCEEEEEEec----CCCcccHhhHHHHHHH
Q 015833 31 EGKVTALYFSA----NWYPPCGNFTGVLVDV 57 (399)
Q Consensus 31 ~gk~vlv~F~a----~wC~~C~~~~p~l~~l 57 (399)
+...|+|+--. ||||+|.+....|...
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 45566665443 6999999987766653
|
|
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.1 Score=33.85 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.4
Q ss_pred EEEEecCCChhhhhh
Q 015833 201 GLYFSARWCIPCEKF 215 (399)
Q Consensus 201 ll~F~a~wC~~C~~~ 215 (399)
+|.|..+||++|...
T Consensus 16 VVifSKs~C~~c~~~ 30 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRA 30 (104)
T ss_pred EEEEECCcCchHHHH
Confidence 456889999999983
|
|
| >cd02341 ZZ_ZZZ3 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=88.03 E-value=0.32 Score=32.61 Aligned_cols=32 Identities=31% Similarity=0.752 Sum_probs=27.1
Q ss_pred eecCCCCC-CCCceeEEcCCCC---CCCcCcccccc
Q 015833 360 FICCDCDE-QGSGWAYQCLECG---YEVHPKCVRAV 391 (399)
Q Consensus 360 ~~c~~C~~-~~~~w~~~c~~c~---~~~~~~~~~~~ 391 (399)
|.|+.|.+ .=.+-+|+|.+|. |||=..|....
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 46999998 6679999999998 99999987654
|
Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.4 Score=32.97 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=33.8
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|++....|.+ .+ +....+++|.+.+ ...++.+..+...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAA--------------------KREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 456778999999998877764 33 3333345543321 124555666778889
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 55 ~i~ 57 (83)
T PRK10638 55 QIF 57 (83)
T ss_pred EEE
Confidence 764
|
|
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=87.25 E-value=5.6 Score=33.85 Aligned_cols=119 Identities=13% Similarity=0.259 Sum_probs=68.2
Q ss_pred cccccCCeEEec-----CCCC-----EEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEE-ecC
Q 015833 8 VQQLRRRMTSTK-----EIGE-----EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV-SSD 76 (399)
Q Consensus 8 ~~~~~p~f~l~d-----~~G~-----~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~V-s~D 76 (399)
.|+..|...+.| ++|. ..+...+.||+.+|..-|-. +.-+++...|.+..++-+=.+..++...| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr-~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGR-SSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccC-CchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 467778777655 2333 44456789999888777553 33444444444433333211223554444 554
Q ss_pred CC--------hHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC-cCeEEEEcCCCCCCCeeecc
Q 015833 77 ED--------LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG-IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 77 ~~--------~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~-~P~~~lid~~~~~G~i~~~~ 133 (399)
.. +.+.++-.++++|-.+-. |.+ ..+.+.+++.. --.++++|+ +|++....
T Consensus 82 DAi~gt~~fVrss~e~~kk~~p~s~~vl-D~~--G~~~~aW~L~~~~SaiiVlDK---~G~V~F~k 141 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSKKEFPWSQFVL-DSN--GVVRKAWQLQEESSAIIVLDK---QGKVQFVK 141 (160)
T ss_pred cccccchHHHHHHHHHhhhhCCCcEEEE-cCC--CceeccccCCCCCceEEEEcC---CccEEEEE
Confidence 32 233344444677865544 443 56677777754 356788899 99998653
|
|
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.71 Score=41.42 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=34.5
Q ss_pred CCCEEec--cccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEE
Q 015833 21 IGEEVKV--SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFV 73 (399)
Q Consensus 21 ~G~~v~l--~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~V 73 (399)
+|+..+. ....|++.+|.|+...||||..+.+.+ ..+.+.+.++ +.++.+
T Consensus 24 ~G~~Y~~~~~p~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~ 78 (207)
T PRK10954 24 DGKQYTTLDKPVAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKY 78 (207)
T ss_pred CCceeEEecCcCCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEe
Confidence 4654332 234688889999999999999999866 6666666543 445444
|
|
| >smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein | Back alignment and domain information |
|---|
Probab=86.10 E-value=0.54 Score=30.84 Aligned_cols=32 Identities=28% Similarity=0.814 Sum_probs=28.0
Q ss_pred CeecCCCCCCCCceeEEcCCC-CCCCcCccccc
Q 015833 359 PFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 359 ~~~c~~C~~~~~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.+.|+.|.+.=.+=+|+|..| +|||=+.|-..
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 467999999778889999999 99999999765
|
Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3]. |
| >cd02342 ZZ_UBA_plant Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=85.25 E-value=0.56 Score=30.40 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=24.9
Q ss_pred ecCCCCCCC-CceeEEcCCC-CCCCcCcccccc
Q 015833 361 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRAV 391 (399)
Q Consensus 361 ~c~~C~~~~-~~w~~~c~~c-~~~~~~~~~~~~ 391 (399)
.|+.|.... .+-+|+|..| ||||=..|-.+.
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 599998744 6889999987 799988887553
|
Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding. |
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=84.74 E-value=1.9 Score=34.78 Aligned_cols=24 Identities=17% Similarity=0.222 Sum_probs=15.2
Q ss_pred cEEEEEEec----CCChhhhhhHHHHHH
Q 015833 198 KTVGLYFSA----RWCIPCEKFMPKLLS 221 (399)
Q Consensus 198 k~vll~F~a----~wC~~C~~~~~~l~~ 221 (399)
..|+|+--. ||||+|.+....|.+
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSA 42 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 345554433 599999986665554
|
|
| >KOG4498 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.58 E-value=1.9 Score=37.52 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=46.4
Q ss_pred ecCCCCEEecccc--CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 015833 18 TKEIGEEVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 74 (399)
Q Consensus 18 ~d~~G~~v~l~~~--~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs 74 (399)
.+..|++|++.++ +.+.|+....-+.|--|++....|..+.+-+...| +.+++|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEe
Confidence 5788999999998 45677777779999999999999999977777776 8888774
|
|
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.86 E-value=5.8 Score=33.60 Aligned_cols=101 Identities=22% Similarity=0.317 Sum_probs=60.3
Q ss_pred eeecccc-CCcEEEEEEecC--CChh-hhhhHHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEecCCCHHHHHHHHhcCCC
Q 015833 189 KVPVSSL-VGKTVGLYFSAR--WCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMPW 263 (399)
Q Consensus 189 ~~~l~~~-~gk~vll~F~a~--wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~ 263 (399)
+++++++ +||.++| |-.| ..|. |+...|-+.+-.++++.+ ++ +|+.||+| ++-..+.+.+.++-
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksK---------GVd~iicvSVn-DpFv~~aW~k~~g~ 102 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSK---------GVDEIICVSVN-DPFVMKAWAKSLGA 102 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhc---------CCcEEEEEecC-cHHHHHHHHhhcCc
Confidence 5677765 6766555 5544 5666 667899999989999876 44 58888888 44333333333221
Q ss_pred -cccccCCchhHHHHHhCCC-----------CccceEEEECCCCcEEecc
Q 015833 264 -LALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 264 -~~~p~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 301 (399)
-...+..|...++.+.+|+ ++-....++ .||++...+
T Consensus 103 ~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 103 NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 1334444545555555443 444455666 688887654
|
|
| >cd02334 ZZ_dystrophin Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=82.72 E-value=0.85 Score=30.74 Aligned_cols=30 Identities=33% Similarity=0.907 Sum_probs=24.8
Q ss_pred ecCCCCCC-CCceeEEcCCC-CCCCcCccccc
Q 015833 361 ICCDCDEQ-GSGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 361 ~c~~C~~~-~~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.|+.|+.. -.+.+|.|.+| ||||=..|-..
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 59999975 58899999999 78888888654
|
Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan. |
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.57 E-value=5.4 Score=29.28 Aligned_cols=71 Identities=20% Similarity=0.359 Sum_probs=44.1
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH--HHHHh
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK--ELTKY 279 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~--~~~~~ 279 (399)
+.|++..||.|......|+++.- +++.| .+-.+-..+++|+.-. |... +-.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v--------------~yd~V--eIt~Sm~NlKrFl~lR---------Ds~~~Fd~vk~ 59 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV--------------DYDFV--EITESMANLKRFLHLR---------DSRPEFDEVKS 59 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC--------------Cceee--ehhhhhhhHHHHHhhh---------ccchhHHhhhh
Confidence 56899999999877666655421 23333 3344566777776522 1112 23566
Q ss_pred CCCCccceEEEECCCCcEEe
Q 015833 280 FDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~ 299 (399)
.|--++|.+.+ .+|++|-
T Consensus 60 ~gyiGIPall~--~d~~vVl 77 (85)
T COG4545 60 NGYIGIPALLT--DDGKVVL 77 (85)
T ss_pred cCcccceEEEe--CCCcEEE
Confidence 78889998754 4677764
|
|
| >cd02337 ZZ_CBP Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=82.41 E-value=0.87 Score=29.42 Aligned_cols=33 Identities=18% Similarity=0.714 Sum_probs=26.4
Q ss_pred eecCCCCCCCCceeEEcCCC-CCCCcCccccccCC
Q 015833 360 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVDR 393 (399)
Q Consensus 360 ~~c~~C~~~~~~w~~~c~~c-~~~~~~~~~~~~~~ 393 (399)
|-|+.|.+. .+=+|+|.+| +|||=..|-..+.-
T Consensus 1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~~~H 34 (41)
T cd02337 1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNTKNH 34 (41)
T ss_pred CcCCCCCCc-CCCceECCCCcchhhHHHHhCCCCC
Confidence 469999884 4689999999 99998888766443
|
Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear. |
| >PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long | Back alignment and domain information |
|---|
Probab=81.24 E-value=1.2 Score=35.40 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.8
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEec
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+...||+..+|+++++ ++|+.+..
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 789999999999999999 89988765
|
This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G. |
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=80.86 E-value=24 Score=33.98 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=46.6
Q ss_pred cEEEEEEecCCC--hhhhhhH---HHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 198 KTVGLYFSARWC--IPCEKFM---PKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 198 k~vll~F~a~wC--~~C~~~~---~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+.++|+|+.+-- ...++.. ..+-+|..+.-.. .++.+..|....+
T Consensus 52 d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--------~gigfg~VD~~Kd---------------------- 101 (383)
T PF01216_consen 52 DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--------KGIGFGMVDSKKD---------------------- 101 (383)
T ss_dssp SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--------CTEEEEEEETTTT----------------------
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--------cCcceEEeccHHH----------------------
Confidence 567888887642 2222222 2234455554432 3788888877655
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
..+++++|+...++++++ ++|+++..+|.
T Consensus 102 -~klAKKLgv~E~~SiyVf-kd~~~IEydG~ 130 (383)
T PF01216_consen 102 -AKLAKKLGVEEEGSIYVF-KDGEVIEYDGE 130 (383)
T ss_dssp -HHHHHHHT--STTEEEEE-ETTEEEEE-S-
T ss_pred -HHHHHhcCccccCcEEEE-ECCcEEEecCc
Confidence 789999999999999999 99999988753
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.83 E-value=10 Score=35.82 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=56.3
Q ss_pred cccCCCEEEEEEecCC----CcccHhhHHHHHHHHHHHhcCCCc---EEEEEEecCCChHHHHHhHhcCCCcccccCChH
Q 015833 28 SDLEGKVTALYFSANW----YPPCGNFTGVLVDVYEELRNNGSD---FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE 100 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~w----C~~C~~~~p~l~~l~~~~~~~~~~---~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~ 100 (399)
...++-.++++|.|.. |.-|.....+++-++..+..++++ ..+.+-.+| .+
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd----------------------~~ 113 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVD----------------------YD 113 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEe----------------------cc
Confidence 3445567888898754 999999999999999998754322 233333333 12
Q ss_pred HHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 101 TKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 101 ~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
...++.+++++...|+++++.| ..|+..
T Consensus 114 e~p~~Fq~l~ln~~P~l~~f~P--~~~n~~ 141 (331)
T KOG2603|consen 114 ESPQVFQQLNLNNVPHLVLFSP--AKGNKK 141 (331)
T ss_pred ccHHHHHHhcccCCCeEEEeCC--Cccccc
Confidence 2288899999999999999987 355544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 399 | ||||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 6e-21 | ||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 6e-21 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 1e-20 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 4e-20 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 4e-20 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 4e-19 | ||
| 3s9f_A | 165 | The Structure Of Tryparedoxin I From Leishmania Maj | 9e-19 | ||
| 1oc9_A | 152 | Tryparedoxin Ii From C.Fasciculata Solved By Mr Len | 1e-18 | ||
| 1o6j_A | 150 | Tryparedoxin Ii From C.Fasciculata Solved By Sulphu | 2e-18 | ||
| 1o81_A | 152 | Tryparedoxin Ii From C.fasciculata Solved By Sulphu | 2e-18 | ||
| 1fg4_A | 149 | Structure Of Tryparedoxin Ii Length = 149 | 2e-18 | ||
| 1i5g_A | 144 | Tryparedoxin Ii Complexed With Glutathionylspermidi | 2e-17 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 2e-13 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 4e-13 | ||
| 1v5n_A | 89 | Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth | 2e-06 | ||
| 1st9_A | 143 | Crystal Structure Of A Soluble Domain Of Resa In Th | 3e-05 | ||
| 2h1b_A | 143 | Resa E80q Length = 143 | 3e-05 | ||
| 2h19_A | 143 | Crystal Structure Of Resa Cys77ala Variant Length = | 3e-04 | ||
| 2h1a_A | 143 | Resa C74a Variant Length = 143 | 3e-04 | ||
| 3c73_A | 140 | Structure Of Cehc Variant Resa Length = 140 | 3e-04 | ||
| 3c71_A | 143 | Struture Of A Resa Variant With A Dsba-Like Active | 3e-04 | ||
| 2ls5_A | 159 | Solution Structure Of A Putative Protein Disulfide | 4e-04 |
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165 | Back alignment and structure |
|
| >pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152 | Back alignment and structure |
|
| >pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150 | Back alignment and structure |
|
| >pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152 | Back alignment and structure |
|
| >pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149 | Back alignment and structure |
|
| >pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89 | Back alignment and structure |
|
| >pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143 | Back alignment and structure |
|
| >pdb|2H1B|A Chain A, Resa E80q Length = 143 | Back alignment and structure |
|
| >pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H1A|A Chain A, Resa C74a Variant Length = 143 | Back alignment and structure |
|
| >pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140 | Back alignment and structure |
|
| >pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143 | Back alignment and structure |
|
| >pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide Isomerase From Bacteroides Thetaiotaomicron Length = 159 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 4e-40
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
D +V V SL GK V YFSA WC P F P+L+ Y K ++ ++FEVVF +
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 247 TDRDQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN 304
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 70 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 305 -LINLYQENAYPFTEA 319
L+ + +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-34
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
EV+V L GK+ YFSA+W PP FT L++ Y++ + +FEVVF + DE+ +
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDG 76
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELI 138
F Y A MPWLAVP++ E + L++ F++E IP L+ + D D T L+
Sbjct: 77 FAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGV----DADSGDVVTTRARATLV 132
Query: 139 YKYGIRAFPFTK 150
FP+
Sbjct: 133 KDPEGEQFPWKD 144
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 5e-40
Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+V + SLVGKTV LYFSA WC PC F P L Y+K ++FEVV +S
Sbjct: 19 GEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISW 70
Query: 248 DRDQTSFESYFGTMPWLALPFG-DPTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN- 304
D +++ F Y+G MPWLALPF T+ EL K F V+ IP L+ I + G + Q R
Sbjct: 71 DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTR 130
Query: 305 LINLYQENAYPFTE 318
+I +P+
Sbjct: 131 VIEDPDGANFPWPN 144
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 6e-33
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
EV + L GK LYFSA+W PPC FT VL + YE+ +FEVV +S DE+ +
Sbjct: 18 SGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK-NFEVVLISWDENESD 76
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELI 138
F++Y MPWLA+P+ T L + F +E IP L+ + + D +I
Sbjct: 77 FHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI----NADTGAIIGTQARTRVI 132
Query: 139 YKYGIRAFPFT 149
FP+
Sbjct: 133 EDPDGANFPWP 143
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 6e-40
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ + SL GKTV YFSA WC P F P+L+ Y+ + ++FEV+ +S
Sbjct: 19 ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISW 70
Query: 248 DRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 305
D F+ Y+ MPWLALPF D LT FDV+ IP LV + + G +T Q R +
Sbjct: 71 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 306 I-NLYQENAYPFTE 318
+ + +P+
Sbjct: 131 VVKDPEAKDFPWPN 144
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-34
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 73
K ++ + L GK YFSA+W PP FT L+D Y+ +FEV+ +
Sbjct: 10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLI 68
Query: 74 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---AT 130
S DE F +Y A MPWLA+P+ D + + L FD++ IP LV + + D T
Sbjct: 69 SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGV----EADSGNIIT 124
Query: 131 LHDGVELIYKYGIRAFPFT 149
++ + FP+
Sbjct: 125 TQARTMVVKDPEAKDFPWP 143
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 6e-39
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ + SL GKTV YFSA WC PC F P+L+ Y+K + ++FE++ S
Sbjct: 39 DTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--------KNFEIILASW 90
Query: 248 DRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 305
D ++ F +Y+ MPWL++PF + I LTK + V+ IP L+ + + G TVT + R+
Sbjct: 91 DEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHA 150
Query: 306 I-NLYQENAYPFTE 318
+ +P+ +
Sbjct: 151 LTQDPMGEQFPWRD 164
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-33
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
+ + L GK YFSA+W PPC FT LV+ YE+ ++ +FE++ S DE+ +
Sbjct: 38 ADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSK-NFEIILASWDEEEDD 96
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELI 138
FN Y A MPWL++P+++ +AL +K+ +E IP L+ L + D T L
Sbjct: 97 FNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGL----NADTGDTVTTRARHALT 152
Query: 139 YKYGIRAFPFTKE 151
FP+ E
Sbjct: 153 QDPMGEQFPWRDE 165
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-38
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 188 EKVPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245
+V + + +G YFSA WC PC F P L +Y ++ D FE++FV
Sbjct: 15 CEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELV-------DDSAPFEIIFV 67
Query: 246 STDRDQTSFESYFG--TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303
S+DR + Y WLA+P+ +T + + GIP LVI+ +G ++ GR
Sbjct: 68 SSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127
Query: 304 NLINLYQENAY 314
+ A+
Sbjct: 128 GEVQSLGPRAF 138
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-29
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 22 GEEVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79
EV ++ + + YFSA+W PPC FT +L D+Y EL ++ + FE++FVSSD
Sbjct: 14 RCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSE 73
Query: 80 NAFNNYRAC--MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH-DGVE 136
+ Y WLA+PY + K+ I GIP LV++ KD + +G
Sbjct: 74 DDMFQYMMESHGDWLAIPYRS-GPASNVTAKYGITGIPALVIV----KKDGTLISMNGRG 128
Query: 137 LIYKYGIRAF 146
+ G RAF
Sbjct: 129 EVQSLGPRAF 138
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 4e-23
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 312 NAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHR-HELNLVSEGTGGGPFICCDCDEQGS 370
+ TE +L+ +E + +E AK+ P+ H+ H HEL L + C C+E+G+
Sbjct: 3 SGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGT 58
Query: 371 GWAYQCLECGYEVHPKCVRAVDRGS 395
W+Y C EC +++H KC D
Sbjct: 59 IWSYHCDECDFDLHAKCALNEDTKE 83
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVF 244
+ +S L + L+F C C KF + + ++ V+
Sbjct: 18 DNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG---------TLRVLA 68
Query: 245 VSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303
+ D ++ + + MP + + + +D++ P + ++ + + K
Sbjct: 69 IYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDTS 128
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-15
Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 22/145 (15%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDED 78
G+ ++S L+ + T L+F C F + + E + N V+ + DE+
Sbjct: 17 GDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDEN 74
Query: 79 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI 138
+ MP + + + +DI P + +L D
Sbjct: 75 REEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLL----DG------RKR--- 121
Query: 139 YKYGIRAFPFTKEKLEELQKEEKEK 163
+ + E+L + + K
Sbjct: 122 ----VILKDTSMEQLIDYLATQAGK 142
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
++ L GK V + F+ L +Y K FE+ +S
Sbjct: 26 NTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ---------GFEIYQISL 76
Query: 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300
D D+ +++ +PW+ + + ++V +P + ++ + +
Sbjct: 77 DGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSAR 129
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 4e-13
Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G ++DL+GKV + F+ L ++Y + + G FE+ +S D D +
Sbjct: 25 GNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHF 82
Query: 82 FNNYRACMPWLAVPYSDLE-TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK 140
+ +PW+ V D + +++ +P + ++ ++ + +
Sbjct: 83 WKTSADNLPWVCV--RDANGAYSSYISLYNVTNLPSVFLV----NR------NNE--LSA 128
Query: 141 YGIRAFPFTKEKLEELQKEEKEKHE 165
G E +++L + H
Sbjct: 129 RGEN-IKDLDEAIKKLLEGHHHHHH 152
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 6e-17
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
V ++ GK V + F C C K P LL Y K F + VST
Sbjct: 20 NSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK---------GFTIYGVST 70
Query: 248 DRDQTSFESYFG--TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303
DR + ++ W + +K++ + + + G P ++++ PEGK V K+ R
Sbjct: 71 DRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-12
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 18/148 (12%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G V ++D +GK + F C T L+ Y ++ G F + VS+D
Sbjct: 19 GNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREED 76
Query: 82 FNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 139
+ W V + K + + I G P ++++ D +G I
Sbjct: 77 WKKAIEEDKSYWNQVL-LQKDDVKDVLESYCIVGFPHIILV----DP------EGK--IV 123
Query: 140 KYGIRAFPFTKEKLEELQKEEKEKHERQ 167
+R +E+ KE H
Sbjct: 124 AKELRG-DDLYNTVEKFVNGAKEGHHHH 150
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-16
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
K + + L+ + C C + + L + I K +V+ +
Sbjct: 22 VKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASP-VINGFTAAKK-----LKVLSIYP 75
Query: 248 DRDQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300
D + ++ + W + IK Y D++ IP L ++ + K
Sbjct: 76 DEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY-DLRAIPTLYLLDKNKTVLLK 129
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 4e-13
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 22/141 (15%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDED 78
G + + + T L+ + C L + +V+ + DE+
Sbjct: 21 GVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEE 78
Query: 79 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI 138
L+ + +R D E +D+ IP L +L DK +
Sbjct: 79 LDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLL----DK------NKT--- 125
Query: 139 YKYGIRAFPFTKEKLEELQKE 159
+ T +K+E+ E
Sbjct: 126 ----VLLKDATLQKVEQYLAE 142
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-16
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 23/148 (15%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ V ++ L GK + + A WC PC +P L + +K D V +S
Sbjct: 21 KTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK---------DIHFVSLSC 71
Query: 248 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 305
D+++ ++E+ + + L G + + + GIP +++ +GK ++
Sbjct: 72 DKNKKAWENMVTKDQLKGIQLHMGTD--RTFMDAYLINGIPRFILLDRDGKIISANMT-- 127
Query: 306 INLYQENAYPFTEAKLEFLEKQMEEEAK 333
P E + + E
Sbjct: 128 --------RPSDPKTAEKFNELLGLEGH 147
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 9e-12
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 17/148 (11%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ V ++DL+GK + A W PC L ++ E+ V +S D++ A
Sbjct: 20 GKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKA 77
Query: 82 FNNYRA--CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 139
+ N + + + + T + + I GIP ++L D+ DG +
Sbjct: 78 WENMVTKDQLKGIQLH---MGTDRTFMDAYLINGIPRFILL----DR------DGKIISA 124
Query: 140 KYGIRAFPFTKEKLEELQKEEKEKHERQ 167
+ P T EK EL E H
Sbjct: 125 NMTRPSDPKTAEKFNELLGLEGHHHHHH 152
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-16
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 23/147 (15%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ + K L+F C C++ PKL + K + + +V +
Sbjct: 22 TYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRA---------KGIQVYAANI 72
Query: 248 DRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRN 304
+R + + WL + + +D+ P L ++ + K+
Sbjct: 73 ERKDEEWLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIG- 130
Query: 305 LINLYQENAYPFTEAKLEFLEKQMEEE 331
Y + L EK ++ +
Sbjct: 131 ---------YENLDDFLVQYEKSLKTK 148
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 20/145 (13%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G + D++ K T L+F + C T L D + + R G +V + +
Sbjct: 21 GTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEE 78
Query: 82 FNNY---RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI 138
+ + + WL V D + +DI P L VL DK + V I
Sbjct: 79 WLKFIRSKKIGGWLNV--RDSKNHTDFKITYDIYATPVLYVL----DK------NKV--I 124
Query: 139 YKYGIRAFPFTKEKLEELQKEEKEK 163
I + L + +K K K
Sbjct: 125 IAKRIGYENL-DDFLVQYEKSLKTK 148
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-15
Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
+ + L F A WC P + +L + ++ K+N ++F ++ +S D D+ ++E+
Sbjct: 33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKN--------KNFAMLGISLDIDREAWET 84
Query: 257 YFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 314
+ W + E K + + +P +++ P GK + + +
Sbjct: 85 AIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQ----------G 134
Query: 315 PFTEAKL-EFLEKQ 327
KL E L+ +
Sbjct: 135 EALTGKLKELLKTE 148
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-08
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 21/144 (14%)
Query: 22 GEEVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79
GE++ S + L F A+W P L + +E + N +F ++ +S D D
Sbjct: 21 GEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN-KNFAMLGISLDIDR 79
Query: 80 NAFNNY--RACMPWLAVPYSDLE-TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 136
A+ + + W V D +++ I +P ++L G
Sbjct: 80 EAWETAIKKDTLSWDQV--CDFTGLSSETAKQYAILTLPTNILL----SP------TGK- 126
Query: 137 LIYKYGIRAFPFTKEKLEELQKEE 160
I I+ KL+EL K E
Sbjct: 127 -ILARDIQG-EALTGKLKELLKTE 148
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 6e-15
Identities = 61/376 (16%), Positives = 119/376 (31%), Gaps = 106/376 (28%)
Query: 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS 66
VQ + + + S +EI + D V+ L L +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKD---AVSGTLR--------------LFWT---LLSKQE 76
Query: 67 DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK 126
+ FV +E L NY +L P + + ++ + IE D+
Sbjct: 77 EMVQKFV--EEVLRI--NY----KFLMSPIKTEQRQPSMMTRMYIE----------QRDR 118
Query: 127 DDATLHDGVELIYKYGI-RAFPFT--KEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 183
L++ ++ KY + R P+ ++ L EL+ + + G +LG
Sbjct: 119 ----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-----------VLID--G-VLG 160
Query: 184 HPPDEKVPVSSLVGKTV-------------GLYFSARW-----CIPCEKFMPKLLSIYQK 225
GKT + F W C E + L + +
Sbjct: 161 ------------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 226 IKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW----LALPFGDPTIKELTKYFD 281
I N + D + ++ S Q + P+ L L + + F+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFN 263
Query: 282 VQGIPCLVIIGPEGKTVTKQGRNLINLY---QENAYPFTEAK-LEFLEKQMEEEAKNLPR 337
+ C +++ K VT + ++ T + L K ++ ++LPR
Sbjct: 264 LS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 338 SEFHIGHRHELNLVSE 353
E + L++++E
Sbjct: 321 -EVLTTNPRRLSIIAE 335
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-14
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 186 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245
V +S G V L F A WC PC + P + + K K + F+VV V
Sbjct: 17 KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA---------KGFQVVAV 67
Query: 246 STDRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300
+ D + + DP + + + V+G+P +I GK + +
Sbjct: 68 NLDAKTGDAMKFLAQVPAEFTVAF--DPK-GQTPRLYGVKGMPTSFLIDRNGKVLLQ 121
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 20/148 (13%)
Query: 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83
VK+SD G V L F A+W PC + + + + G F+VV V+ D
Sbjct: 20 VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAM 77
Query: 84 NY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
+ + + + K R + ++G+P ++ D+ +G L+
Sbjct: 78 KFLAQVPAEFTVA----FDPKGQTPRLYGVKGMPTSFLI----DR------NGKVLLQHV 123
Query: 142 GIRA--FPFTKEKLEELQKEEKEKHERQ 167
G R ++++ + H
Sbjct: 124 GFRPADKEALEQQILAALGGNEGHHHHH 151
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 3e-14
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 12/118 (10%)
Query: 186 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245
D K + +G+ L F A + +L + K + + +
Sbjct: 21 NDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD---------KIAMCSI 71
Query: 246 STDRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300
S D ++ F G EL K +D++ +I EG +
Sbjct: 72 SMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAA 129
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 21/143 (14%)
Query: 19 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78
+ + G+ T L F A + L + + + + +S DE
Sbjct: 19 LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEK 76
Query: 79 LNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 136
+ F + + L + L +K+D+ ++ + +GV
Sbjct: 77 ESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLI----ND------EGV- 125
Query: 137 LIYKYGIRAFPFTKEKLEELQKE 159
I A T EKL E+ K
Sbjct: 126 ------IIAANVTPEKLTEILKA 142
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 4e-14
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 28/158 (17%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+++ +S L GK V L F WC PC+K P + + Y+ K + E+V V+
Sbjct: 17 KRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---------QGVEIVAVNV 67
Query: 248 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ-GRN 304
+ + ++ + + + + D +++ +DV +P +I PEGK V G
Sbjct: 68 GESKIAVHNFMKSYGVNFPVVL--DTD-RQVLDAYDVSPLPTTFLINPEGKVVKVVTG-- 122
Query: 305 LINLYQENAYPFTEAKLE-FLEKQMEEEAKNLPRSEFH 341
TE+ + ++ E L H
Sbjct: 123 ----------TMTESMIHDYMNLIKPGETSGLEHHHHH 150
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-10
Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ +++SDL+GK L F W PC + + Y+ ++ G E+V V+ E A
Sbjct: 16 GKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIA 73
Query: 82 FNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 139
+N+ + + V L+T + + +D+ +P ++ + +G +
Sbjct: 74 VHNFMKSYGVNFPVV----LDTDRQVLDAYDVSPLPTTFLI----NP------EGKVVKV 119
Query: 140 KYGIRAFPFTKEKLEELQKEEKEKHERQT 168
G + + ++ E E
Sbjct: 120 VTGTMTESMIHDYMNLIKPGETSGLEHHH 148
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-14
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 188 EKVPVSSLV--GKTVGLYFSARWCIPC--EKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 243
EK+ SS K++ + F A W ++ +L IY+K K+N + ++
Sbjct: 22 EKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN--------KYIGML 73
Query: 244 FVSTDRDQTSFESYF--GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301
+S D D+ ++ T+ W + E+ K + + IP +++ +GK + K
Sbjct: 74 GISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133
Query: 302 GR 303
R
Sbjct: 134 LR 135
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 21/144 (14%)
Query: 22 GEEVKVSD--LEGKVTALYFSANWYPPCGNFTGV--LVDVYEELRNNGSDFEVVFVSSDE 77
GE++ S + K + F A+W L ++Y++ + N ++ +S D
Sbjct: 21 GEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLGISLDV 79
Query: 78 DLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV 135
D + + R + W V + +++ I IP ++L DG
Sbjct: 80 DKQQWKDAIKRDTLDWEQV-CDFGGLNSEVAKQYSIYKIPANILL----SS------DGK 128
Query: 136 ELIYKYGIRAFPFTKEKLEELQKE 159
I +R K+K+E + +E
Sbjct: 129 --ILAKNLRG-EELKKKIENIVEE 149
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
E ++ GK V + F A WC C MP + + + + D V+ V+
Sbjct: 32 ENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK---------GDLVVLAVNV 82
Query: 248 DRDQTSF-ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301
++ + +L+ D T ++ + + +P I+ +G +
Sbjct: 83 EKRFPEKYRRAPVSFNFLS----DAT-GQVQQRYGANRLPDTFIVDRKGIIRQRV 132
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-08
Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 21/146 (14%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
GE ++ GK+ + F A+W P C + + + + V+ V+ ++
Sbjct: 31 GENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPE 88
Query: 82 F-NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK 140
+L + + +++ +P ++ D+ G+
Sbjct: 89 KYRRAPVSFNFL------SDATGQVQQRYGANRLPDTFIV----DR------KGIIRQRV 132
Query: 141 YGIRAF--PFTKEKLEELQKEEKEKH 164
G + P L+ L+ H
Sbjct: 133 TGGIEWDAPKVVSYLKSLEGHHHHHH 158
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-12
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ +S GK V L F A WC C +P I ++ + + VS
Sbjct: 13 KTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD---------DYVVLTVVSP 63
Query: 248 DRD----QTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 296
+ F++++ + + LP DP+ +L + + V+ P I EGK
Sbjct: 64 GHKGEQSEADFKNWYKGLDYKNLPVLVDPS-GKLLETYGVRSYPTQAFIDKEGK 116
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-08
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 19/140 (13%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 78
G+ ++SD +GK L F A+W C ++ +E ++ + VS
Sbjct: 12 GKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDY--VVLTVVSPGHKGEQ 69
Query: 79 -LNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 136
F N+ + + +P D L + + P + DK +G
Sbjct: 70 SEADFKNWYKGLDYKNLPVLVD--PSGKLLETYGVRSYPTQAFI----DK------EGKL 117
Query: 137 LIYKYGIRAFPFTKEKLEEL 156
+ G + L+EL
Sbjct: 118 VKTHPGFMEKDAILQTLKEL 137
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-12
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 28/164 (17%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ +SL GK + F A WC PC +P ++ + + F V ++
Sbjct: 25 KPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---------RGFTFVGIAV 75
Query: 248 DRDQT---SFESYFG-TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303
+ ++ G P + + GIP +I G
Sbjct: 76 NEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGV--- 132
Query: 304 NLINLYQENAYPFTEAKLE-FLEKQMEEEAKNLPRSEFHIGHRH 346
P ++A + ++ + +A E H H H
Sbjct: 133 --------IVGPRSKADFDRIVKMALGAKA---ATKEGHHHHHH 165
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 21/142 (14%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G+ + L+GK + F A W PPC + +V V + + G F V ++ +E L
Sbjct: 24 GKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPN 81
Query: 82 FNNY--RACMPWLAVPYSDLETKKALN--RKFDIEGIPCLVVLQPYDDKDDATLHDGVEL 137
NY + + V + E +A N I GIP V+ D G
Sbjct: 82 VKNYMKTQGIIYP-VMMATPELIRAFNGYIDGGITGIPTSFVI----DA------SGNVS 130
Query: 138 IYKYGIRAFPFTKEKLEELQKE 159
G P +K + + K
Sbjct: 131 GVIVG----PRSKADFDRIVKM 148
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-12
Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 32/163 (19%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ V + L GK + F C C MPK++ K ++F+V+ V+
Sbjct: 19 KTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN---------KNFQVLAVAQ 69
Query: 248 DRDQTS----FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303
D + +G +P+ + D K + + F Q P V+IG +G+ +
Sbjct: 70 PIDPIESVRQYVKDYG-LPFTVMY--DAD-KAVGQAFGTQVYPTSVLIGKKGEILKTYVG 125
Query: 304 NLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRH 346
E L ++++ +N +E H H H
Sbjct: 126 --------------EPDFGKLYQEIDTAWRN-SDAEGHHHHHH 153
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-09
Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 23/145 (15%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 78
G+ V +DL+GKVT + F P C + ++ + +N F+V+ V+ D
Sbjct: 18 GKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIE 75
Query: 79 --LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 136
+Y +P+ + + KA+ + F + P V++ K G
Sbjct: 76 SVRQYVKDYG--LPFTVM----YDADKAVGQAFGTQVYPTSVLI----GK------KGEI 119
Query: 137 LIYKYGIRAFPFTKEKLEELQKEEK 161
L G F ++++ +
Sbjct: 120 LKTYVGEPDFGKLYQEIDTAWRNSD 144
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 7e-12
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 20/122 (16%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
+ +S GKT+ + A WC+PC K MP L + K+ +FEVV ++
Sbjct: 50 GKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS---------GPNFEVVAIN 100
Query: 247 TDRDQTS-----FESYFGTMPWLALPFGDPTI---KELTKYFDVQGIPCLVIIGPEGKTV 298
D + + L F D ++L G+P V++ P+G +
Sbjct: 101 IDTRDPEKPKTFLKEA--NLTRLGY-FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEI 157
Query: 299 TK 300
Sbjct: 158 AT 159
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 22/106 (20%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGV-----LVDVYEELRNNGSDFEVVFVSSD 76
G+ K+SD GK + A W PC L ++ +L FEVV ++ D
Sbjct: 50 GKPKKLSDFRGKTLLVNLWATWCVPC-----RKEMPALDELQGKLSGPN--FEVVAINID 102
Query: 77 ED-----LNAFNNYRACMPWLAVPYSDLETK--KALNRKFDIEGIP 115
+ L ++D + K + L G+P
Sbjct: 103 TRDPEKPKTFLKEAN--LTRLGY-FNDQKAKVFQDLKAIGRALGMP 145
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 9e-12
Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 42/161 (26%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
E + ++++ G V L+F A WC C L + +K + + V+ +
Sbjct: 28 EVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----------EISVIAIDF 76
Query: 248 DRDQT------------------SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLV 289
+ F + + L + F+V+ I +V
Sbjct: 77 WTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDD-GSLVEKFNVRSIDYIV 135
Query: 290 IIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEE 330
I+ + + +LE + K ++
Sbjct: 136 IMDKSSNVLYAGTT------------PSLGELESVIKSVQG 164
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-07
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
GE + ++++ G V L+F A W P C +L + E+ R + V+ +
Sbjct: 27 GEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTA--- 79
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
+ Y +T + + G P +++ D L+ K+
Sbjct: 80 --EALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMV----MDDG-------SLVEKF 126
Query: 142 GIRAFPFT 149
+R+ +
Sbjct: 127 NVRSIDYI 134
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 25/157 (15%)
Query: 181 LLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF 240
L G + + SL + A WC PC K MP + Y+ K+
Sbjct: 8 LAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK---------GSV 58
Query: 241 EVVFVSTDRDQT--SFESYFG-TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 297
++V ++ D +F + P + T V +P V+ P+
Sbjct: 59 DMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGY 118
Query: 298 V-TKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 333
T G E L K + +
Sbjct: 119 RQTITG------------EVNEKSLTDAVKLAHSKCR 143
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 17/152 (11%), Positives = 39/152 (25%), Gaps = 16/152 (10%)
Query: 16 TSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75
+ + + L+ V + A W PC + Y+ + ++V ++
Sbjct: 8 LAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIAL 65
Query: 76 D--EDLNAF-NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132
D +++ F P + +P VV
Sbjct: 66 DTSDNIGNFLKQTPVSYPIWRYT-GANSRNFMKTYGNTVGVLPFTVVE----AP------ 114
Query: 133 DGVELIYKYGIRAFPFTKEKLEELQKEEKEKH 164
G + ++ + +E H
Sbjct: 115 KCGYRQTITGEVNEKSLTDAVKLAHSKCREGH 146
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 14/110 (12%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+SL GK L+F WC C P L + V ++T
Sbjct: 15 APFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIAT 63
Query: 248 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 296
D + +S+ L D + ++V P V +G
Sbjct: 64 RADVGAMQSFVSKYN-LNFTNLNDAD-GVIWARYNVPWQPAFVFYRADGT 111
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-07
Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 22/137 (16%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G + L+GK L+F W P C L V V +++ D+ A
Sbjct: 14 GAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA----NPAVTFVGIATRADVGA 69
Query: 82 FNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 139
++ + + + + + + ++++ P V DG
Sbjct: 70 MQSFVSKYNLNFTNL----NDADGVIWARYNVPWQPAFVFY----RA------DGT--ST 113
Query: 140 KYGIRAFPFTKEKLEEL 156
++++L
Sbjct: 114 FVNNPTAAMSQDELSGR 130
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-11
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
E V +S L G+ V + F A WC PC + +P ++ + + + F ++ VS
Sbjct: 19 EVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG---------KPFRMLCVSI 69
Query: 248 DRDQTSF-ESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300
D E +F LP D K + K + G+P +I G + K
Sbjct: 70 DEGGKVAVEEFFRKTG-FTLPVLLDAD-KRVGKLYGTTGVPETFVIDRHGVILKK 122
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-08
Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 25/153 (16%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 78
GE VK+SDL+G+V + F A W PPC ++ + + F ++ VS DE
Sbjct: 18 GEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKV 75
Query: 79 --LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 136
F +P D K + + + G+P V+ D+ GV
Sbjct: 76 AVEEFFRKTGFTLP----VLLD--ADKRVGKLYGTTGVPETFVI----DR------HGVI 119
Query: 137 LIYKYGIRAF--PFTKEKLEELQKEEKEKHERQ 167
L G + P L + +E H
Sbjct: 120 LKKVVGAMEWDHPEVIAFLNNELSKAREGHHHH 152
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 6e-11
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 20/121 (16%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245
+ ++ L GK + + C C +P + ++ V+ +
Sbjct: 18 ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED---------KVAVLGL 68
Query: 246 STDRDQTSFESYFG----------TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 295
T + + P GD + + ++G P L++I G
Sbjct: 69 HTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAG 128
Query: 296 K 296
Sbjct: 129 D 129
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 22/148 (14%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSDEDLN 80
++ ++DL GKV + P C + V + V+ + + + +
Sbjct: 18 ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHH 75
Query: 81 AFNNYRACMPWLA---VPY------SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 131
+ +L + + + + G P L+++ DK
Sbjct: 76 EAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLI----DK----- 126
Query: 132 HDGVELIYKYGIRAFPFTKEKLEELQKE 159
G + +G + ++ L E
Sbjct: 127 -AGDLRAHHFGDVSELLLGAEIATLLGE 153
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-11
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 24/146 (16%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
++V +SSL GK V L F+A WC C K MP + K DF ++ +
Sbjct: 24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIW-------LKHKDNADFALIGIDR 76
Query: 248 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKY-FDVQGIPCLVIIGPEGKTVTKQGRN 304
D ++ + + + DP KY GI V+I EGK V
Sbjct: 77 DEPLEKVLAFAKSTGVTYPLGL--DPGADIFAKYALRDAGITRNVLIDREGKIVKLTR-- 132
Query: 305 LINLYQENAYPFTEAKLEFLEKQMEE 330
+ E + L +Q+ E
Sbjct: 133 ----------LYNEEEFASLVQQINE 148
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-09
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 26/153 (16%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGV-----LVDVYEELRNNGSDFEVVFVSSD 76
G++V +S L GKV L F+A+W C + + +DF ++ + D
Sbjct: 23 GKQVTLSSLRGKVVMLQFTASWCGVC-----RKEMPFIEKDIWLKHKDNADFALIGIDRD 77
Query: 77 EDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 134
E L + + + D GI V++ D+ +G
Sbjct: 78 EPLEKVLAFAKSTGVTYPLG--LDPGADIFAKYALRDAGITRNVLI----DR------EG 125
Query: 135 VELIYKYGIRA--FPFTKEKLEELQKEEKEKHE 165
+ F +++ E+ KE H
Sbjct: 126 KIVKLTRLYNEEEFASLVQQINEMLKEGHHHHH 158
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-10
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 185 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244
P ++ + + SL GK V + F A CI C++ +P ++ YQ K V+
Sbjct: 70 PGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD---------SGLAVIG 120
Query: 245 VSTDRDQT--------SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 296
V T + G + + D + + P +I G
Sbjct: 121 VHTPEYAFEKVPGNVAKGAANLG-ISYPIAL--DNN-YATWTNYRNRYWPAEYLIDATGT 176
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 27/151 (17%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 78
+ + + L GKV + F A C +V Y+ +++G V+ V + E
Sbjct: 72 NKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAFE 129
Query: 79 ------LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132
N + + ++ T + P ++ D
Sbjct: 130 KVPGNVAKGAANLG--ISYPIALDNNYATWTN----YRNRYWPAEYLI----DA------ 173
Query: 133 DGVELIYKYGIRAFPFTKEKLEELQKEEKEK 163
G K+G + T+ + +L + K
Sbjct: 174 TGTVRHIKFGEGDYNVTETLVRQLLNDAKPG 204
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-10
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 16/114 (14%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
E + K ++F + C C++ MP++ K + + VV V
Sbjct: 20 EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ----------DQLNVVAVHM 69
Query: 248 -----DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 296
D D + + P + LT F+ + +P + G+
Sbjct: 70 PRSEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQ 122
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 28/149 (18%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 78
GE + + K T ++F + C + + ++ ++ VV V
Sbjct: 19 GEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---QLNVVAVHMPRSEDD 75
Query: 79 ------LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132
+ P +++ AL F+ E +P V DK
Sbjct: 76 LDPGKIKETAAEHDITQPIF------VDSDHALTDAFENEYVPAYYVF----DK------ 119
Query: 133 DGVELIYKYGIRAFPFTKEKLEELQKEEK 161
G ++ G ++++ + E +
Sbjct: 120 TGQLRHFQAGGSGMKMLEKRVNRVLAETE 148
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
V K + F A WC C + + Q K + ++ V++
Sbjct: 29 RPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS---------SANLITVAS 79
Query: 248 D-----RDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 296
+ F+ ++ + + LP D + + ++ P +IG +G
Sbjct: 80 PGFLHEKKDGEFQKWYAGLNYPKLPVVTDNG-GTIAQNLNISVYPSWALIGKDGD 133
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-06
Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 16/146 (10%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
V + K T + F A+W P C + G ++ + + ++ V+S L+
Sbjct: 28 NRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHE 85
Query: 82 FNNYRACMPWLAVPYSDLE----TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVEL 137
+ + + Y L + + +I P ++ K DG
Sbjct: 86 KKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALI----GK------DGDVQ 135
Query: 138 IYKYGIRAFPFTKEKLEELQKEEKEK 163
G + +
Sbjct: 136 RIVKGSINEAQALALIRNPNADLGSL 161
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-09
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 13/116 (11%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
SL+GK L+F A WC C+ P + + + V V+
Sbjct: 16 HDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----------EVTFVGVAG 64
Query: 248 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302
+ + + P D + F V P + P G +G
Sbjct: 65 LDQVPAMQEFVNKYPVKTFTQLADTD-GSVWANFGVTQQPAYAFVDPHGNVDVVRG 119
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G + L GK L+F A W P C V+ V + V V+ + + A
Sbjct: 15 GHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAAS----HPEVTFVGVAGLDQVPA 70
Query: 82 FNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIP 115
+ + + +T ++ F + P
Sbjct: 71 MQEFVNKYPVKTFTQL---ADTDGSVWANFGVTQQP 103
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-09
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 21/121 (17%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
E + L GK V + C C +P+ I++ I + +V+ +
Sbjct: 21 EGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE---------SQVQVIGLH 71
Query: 247 TDRDQTSFESYFGTMPWLA---LPF--------GDPTIKELTKYFDVQGIPCLVIIGPEG 295
+ + + ++ + F I K + ++G P +++ +G
Sbjct: 72 SVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKG 131
Query: 296 K 296
+
Sbjct: 132 R 132
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSDEDLN 80
E + DL GKV + P C N ++ + + +V+ + S + +
Sbjct: 20 HEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHH 77
Query: 81 AFNNYRACMPWLA---VPY-------SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130
A ++ + + + + + +K+ +EG P +++ D+
Sbjct: 78 DVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILA----DR---- 129
Query: 131 LHDGVELIYKYGIRAFPFTKEKLEELQKEEKE 162
G ++G L L E E
Sbjct: 130 --KGRIRQVQFGQVDDFVLGLLLGSLLSETDE 159
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-09
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS---TDRDQTS 253
G+ L+F WC PC+K +P+ S Y + ++V V+ ++++Q
Sbjct: 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPS---------DSVKLVTVNLVNSEQNQQV 84
Query: 254 FESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301
E + L P D EL K + + IP ++ +G+ +
Sbjct: 85 VEDFIKANK-LTFPIVLDSK-GELMKEYHIITIPTSFLLNEKGEIEKTK 131
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS---SDED 78
GE++ + + +G+ T L+F +W PPC Y+ ++ ++V V+ S+++
Sbjct: 25 GEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQN 81
Query: 79 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI 138
++ D +K L +++ I IP +L ++ G
Sbjct: 82 QQVVEDFIKANKLTFPIVLD--SKGELMKEYHIITIPTSFLL----NE------KGEIEK 129
Query: 139 YKYGIRAFPFTKEKLEEL 156
K G P T E+L+E
Sbjct: 130 TKIG----PMTAEQLKEW 143
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 8e-09
Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 185 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244
++ +S + V L +WC PC L I+++++ V+
Sbjct: 47 EEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQA---AGNGDTPGGTVLG 103
Query: 245 VSTDRDQTS----FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 296
++ F + G + + ++ IP +++ + +
Sbjct: 104 INVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR 158
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS----DFEVVFVSSDE 77
G ++ +SD E +V L W PC + + L ++EEL+ G+ V+ ++ +
Sbjct: 49 GTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD 108
Query: 78 D 78
Sbjct: 109 Y 109
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 27/105 (25%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
GK V L A WC+ C++F S + AL D ++ + +
Sbjct: 31 GKPVMLDLYADWCVACKEFEKYTFS--------DPQVQKALADTVLLQANVTAN------ 76
Query: 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301
D L K+ +V G+P ++ +G+ +
Sbjct: 77 -------------DAQDVALLKHLNVLGLPTILFFDGQGQEHPQA 108
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 17/121 (14%)
Query: 185 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244
P + V +++ V + F A WC C+ P L + + E G F V+
Sbjct: 19 PKGQPVTPATVSKPAV-IVFWASWCTVCKAEFPGLHRVAE-------ETGV---PFYVIS 67
Query: 245 VSTDRDQTSFESYFG----TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300
+ Y +P LA D E+ F V G P ++ EGK V
Sbjct: 68 REPRDTREVVLEYMKTYPRFIPLLASDR-DRP-HEVAARFKVLGQPWTFVVDREGKVVAL 125
Query: 301 Q 301
Sbjct: 126 F 126
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-05
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 30/131 (22%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
K L F A WC C + + K L + + FEVV +
Sbjct: 29 HKPTLLVFGANWCTDC-RALDKSLRNQKNTAL-------IAKHFEVVKIDVGNFDR---- 76
Query: 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 316
+ + + GIP +V++ +GK NA
Sbjct: 77 -------------NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTT----KGGELANARKM 119
Query: 317 TEAKL-EFLEK 326
++ + +F K
Sbjct: 120 SDQGIYDFFAK 130
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 34/110 (30%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253
G+ V +YF + C C++ +LS + + ++ FV +
Sbjct: 19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR--------------FVVASVSVDT 64
Query: 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303
E +EL + + V G P V + P+ + GR
Sbjct: 65 PEG-----------------QELARRYRVPGTPTFVFLVPKAGAWEEVGR 97
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 9e-05
Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 43/122 (35%)
Query: 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY 257
+ V L+ C C+ + K+ + + V +
Sbjct: 19 QLVLLFIKTENCGVCDVMLRKVNYVLENYNY-------------VEKIEILLQD------ 59
Query: 258 FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR--------NLINLY 309
++E+ + V P +++ GK + ++ R I L+
Sbjct: 60 ---------------MQEIAGRYAVFTGPTVLLF-YNGKEILRESRFISLENLERTIQLF 103
Query: 310 QE 311
+E
Sbjct: 104 EE 105
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 9e-05
Identities = 10/98 (10%), Positives = 23/98 (23%), Gaps = 31/98 (31%)
Query: 204 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 263
F C C + + + K + + + + ++
Sbjct: 33 FKTDTCPYCVEMQK----ELSYVSKEREGKFN------IYYARLEEEKN----------- 71
Query: 264 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301
+L +D +P V + EG
Sbjct: 72 ----------IDLAYKYDANIVPTTVFLDKEGNKFYVH 99
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 22 GEEVKVSDLEGKVTALYFSANWY---P-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76
G E ++ +L+GK L Y C T L+ V +L G DF V+ + D
Sbjct: 18 GNEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD 73
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 28/115 (24%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
E + + + K + + WC PC +++ + + + + F FV+
Sbjct: 17 PEALKRAEVEDKLLFVDCFTTWCGPC-----------KRLSKVVFKDSLVADYFNRHFVN 65
Query: 247 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301
D E EL K + V P L+ I G+ V +
Sbjct: 66 LKMDMEKGEG-----------------VELRKKYGVHAYPTLLFINSSGEVVYRL 103
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 34/144 (23%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
G + + WC C+ PK E + +F V V+ + ++
Sbjct: 46 GLPLMVIIHKSWCGACKALKPKFAE--------STEISELSHNF--VMVNLEDEE----- 90
Query: 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 316
+P ++ D IP ++ + P GK + +IN +Y +
Sbjct: 91 -------------EPKDEDF--SPDGGYIPRILFLDPSGKVHPE----IINENGNPSYKY 131
Query: 317 TEAKLEFLEKQMEEEAKNLPRSEF 340
E + + M+E + L F
Sbjct: 132 FYVSAEQVVQGMKEAQERLTGDAF 155
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 6e-04
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 197 GKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255
K +GL+F+ + WC+ C M + + K + V D Q + +
Sbjct: 47 HKPIGLFFTGSDWCMWC-IKMQDQILQSSEFKHFAGVH--------LHMVEVDFPQKNHQ 97
Query: 256 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302
+EL + V G P LV I EGK + + G
Sbjct: 98 P----------EEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMG 134
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 9e-04
Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 19/137 (13%)
Query: 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256
K V L F+ C+ C K M + K+ + D+ ++ + D E
Sbjct: 47 NKPVMLDFTGYGCVNCRK-MELAVWTDPKVSSII------NNDYVLITLYVDNKTPLTEP 99
Query: 257 YFGTMPWLALPF---GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENA 313
GD F P V+I EG + K Y E+
Sbjct: 100 VKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYA-----YDEDI 154
Query: 314 YPFTEAKLEFLEKQMEE 330
+ + FL+ +E
Sbjct: 155 SKY----INFLQTGLEN 167
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 399 | |||
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.94 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.9 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.9 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.9 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.89 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.89 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.89 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.89 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.89 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.89 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.88 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.88 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.88 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.88 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.88 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.88 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.88 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.88 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.88 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.87 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.87 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.87 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.87 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.87 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.87 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.87 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.87 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.86 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.86 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.86 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.86 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.86 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.86 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.86 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.86 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.86 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.85 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.85 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.85 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.85 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.85 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.85 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.85 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.85 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.85 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.84 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.84 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.84 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.84 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.84 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.84 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.84 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.84 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.84 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.84 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.84 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.84 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.84 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.83 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.83 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.83 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.83 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.83 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.83 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.83 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.83 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.83 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.83 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.83 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.83 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.83 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.83 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.83 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.83 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.82 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.82 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.82 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.82 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.82 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.71 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.82 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.82 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.82 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.82 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.82 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.81 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.7 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.81 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.81 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.81 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.81 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.81 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.81 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.81 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.81 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.81 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.81 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.81 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.81 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.81 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.81 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.81 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.81 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.81 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.81 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.8 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.8 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.8 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.8 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.8 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.8 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.68 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.8 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.8 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.8 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.8 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.8 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.8 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.8 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.79 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.79 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.79 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.79 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.79 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.79 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.79 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.79 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.79 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.79 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.79 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.79 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.79 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.79 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.79 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.79 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.78 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.78 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.78 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.78 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.78 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.78 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.78 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.78 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.78 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.78 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.78 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.78 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.78 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.78 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.78 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.78 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.78 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.77 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.77 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.77 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.77 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.77 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.77 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.77 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.77 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.77 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.76 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.76 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.76 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.76 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.76 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.76 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.76 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.76 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.76 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.76 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.76 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.76 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.76 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.76 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.62 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.75 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.75 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.75 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.75 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.75 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.75 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.75 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.75 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.75 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.75 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.75 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.75 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.74 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.74 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.74 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.74 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.73 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.73 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.73 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.73 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.73 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.72 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.72 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.71 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.71 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.7 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.68 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.68 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.67 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.66 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.65 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.65 | |
| 1v5n_A | 89 | PDI-like hypothetical protein AT1G60420; DC1 domai | 99.64 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.63 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.63 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.62 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.61 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.61 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.61 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.6 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.6 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.58 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.58 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.58 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.54 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.54 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.53 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.53 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.51 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.51 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.51 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.51 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.51 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.51 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.5 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.49 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.49 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.49 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.48 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.48 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.48 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.47 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.47 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.47 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.47 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.47 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.47 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.47 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.47 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.46 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.46 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.46 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.46 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.46 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.45 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.45 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.45 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.45 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.44 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.44 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.44 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.44 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.44 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.44 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.43 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.43 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.43 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.43 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.43 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.43 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.43 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.43 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.42 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.42 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.42 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.42 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.42 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.42 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.41 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.41 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.41 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.4 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.4 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.4 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.4 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.39 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.39 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.39 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.39 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.39 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.39 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.38 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.38 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.38 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.38 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.38 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.38 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.07 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.37 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.37 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.37 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.37 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.36 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.36 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.36 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.36 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.36 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.35 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.34 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.34 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.34 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.33 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.33 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.33 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.33 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.33 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.33 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.32 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.32 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.32 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.32 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.32 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.32 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.31 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.31 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.3 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.3 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.3 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.3 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.3 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.29 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.29 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.29 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.29 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.29 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.28 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.28 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.28 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.27 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.27 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.27 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.26 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.26 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.26 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.26 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.26 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.26 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.26 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.26 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.25 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.25 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.25 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.25 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.25 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.25 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.25 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.25 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.25 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.24 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.24 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.24 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.24 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.24 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.24 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.23 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.23 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.23 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.23 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.22 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.22 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.22 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.22 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.22 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.22 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.21 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.21 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.21 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.21 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.21 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.2 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.2 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.2 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.2 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.19 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.19 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.19 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.82 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.19 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.19 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.19 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.18 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.18 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.18 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.18 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.17 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.17 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.17 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.17 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.79 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.16 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.15 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.15 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.15 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.15 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.14 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.14 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.13 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.13 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.11 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.11 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.11 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.09 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.09 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.09 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.09 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.07 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.06 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.06 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.63 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.04 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.04 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.03 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.03 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.02 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.01 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.01 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.0 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.0 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 98.98 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.96 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.95 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.94 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.93 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.91 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.88 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.87 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.86 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.84 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.79 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.74 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.71 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.71 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.69 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.67 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.65 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.62 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.55 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.54 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.51 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.49 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.49 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.48 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.47 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.45 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.44 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.42 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.41 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.4 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.39 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.39 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.35 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.34 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.34 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.33 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.31 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.27 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.26 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.25 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.22 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.18 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 98.08 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.07 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.06 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.06 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.05 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.03 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.03 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.01 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 97.99 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 97.93 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.87 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 97.75 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.74 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.72 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.71 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 97.7 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.69 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.61 | |
| 4h86_A | 199 | Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch | 97.57 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.57 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 97.51 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 97.49 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 97.46 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 97.44 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 97.44 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.38 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.36 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.33 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.3 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.28 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.27 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 97.23 |
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=208.40 Aligned_cols=201 Identities=19% Similarity=0.297 Sum_probs=142.2
Q ss_pred CCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCCh
Q 015833 20 EIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 99 (399)
Q Consensus 20 ~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~ 99 (399)
++++.+.....+||+++|+|||+||++|+.+.|.|.++++++++.+.++.++.|+.|..
T Consensus 20 l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------------------- 78 (241)
T 3idv_A 20 LNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA--------------------- 78 (241)
T ss_dssp ECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTC---------------------
T ss_pred ecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCC---------------------
Confidence 34443433334799999999999999999999999999999987766688888866533
Q ss_pred HHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCC
Q 015833 100 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG 179 (399)
Q Consensus 100 ~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~ 179 (399)
..++++|+|.++|++++++ +|+.+... |. ...+.+........ . ......+.
T Consensus 79 ---~~l~~~~~v~~~Pt~~~~~----~g~~~~~~--------g~----~~~~~l~~~i~~~~---~------~~~~~~~~ 130 (241)
T 3idv_A 79 ---SVLASRFDVSGYPTIKILK----KGQAVDYE--------GS----RTQEEIVAKVREVS---Q------PDWTPPPE 130 (241)
T ss_dssp ---HHHHHHTTCCSSSEEEEEE----TTEEEECC--------SC----SCHHHHHHHHHHHH---S------TTCCCCCC
T ss_pred ---HHHHHhcCCCcCCEEEEEc----CCCccccc--------Cc----ccHHHHHHHHhhcc---C------cccccccc
Confidence 7889999999999999997 66655221 11 12222222211110 0 00111222
Q ss_pred cccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHh
Q 015833 180 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 259 (399)
Q Consensus 180 f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 259 (399)
.....++. .+...-..+++++|+||++||++|+.+.|.+.++++++.++ ..++.++.|+++.+
T Consensus 131 ~~~~~~~~-~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-------~~~v~~~~vd~~~~--------- 193 (241)
T 3idv_A 131 VTLVLTKE-NFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR-------SPPIPLAKVDATAE--------- 193 (241)
T ss_dssp SSEECCTT-THHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTS-------SSCCCEEEEETTTC---------
T ss_pred cceeccHH-HHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhcc-------CCcEEEEEEECCCC---------
Confidence 22234444 33322235689999999999999999999999999999764 34578888887755
Q ss_pred cCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 260 TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 260 ~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
..+++.|+|.++||++++ ++|+.+...
T Consensus 194 --------------~~l~~~~~v~~~Pt~~~~-~~g~~~~~~ 220 (241)
T 3idv_A 194 --------------TDLAKRFDVSGYPTLKIF-RKGRPYDYN 220 (241)
T ss_dssp --------------HHHHHHTTCCSSSEEEEE-ETTEEEECC
T ss_pred --------------HHHHHHcCCcccCEEEEE-ECCeEEEec
Confidence 679999999999999999 568877643
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=175.97 Aligned_cols=120 Identities=13% Similarity=0.199 Sum_probs=108.7
Q ss_pred HhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 171 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
..+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+ +++++++. ++.|++|+
T Consensus 5 ~~~G~~ap~f~l~~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~---------~~~vi~i~ 74 (142)
T 3eur_A 5 NRLGTKALNFTYTLDSGV-KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK---------KLKVLSIY 74 (142)
T ss_dssp TCTTSBCCCCEEEETTSC-EEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT---------SEEEEEEE
T ss_pred hcCCCccCCcEEEcCCCC-EeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC---------CeEEEEEE
Confidence 468999999999 99999 999999999999999999999999999999999 99999865 89999999
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhH--HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 247 TDRDQTSFESYFGTMPWLALPFGDPTIK--ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~--~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+|.+.+.+++++++++ +.++...|... .+++.|++.++|+++|||++|+|+.+.
T Consensus 75 ~d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 75 PDEELDEWKKHRNDFA-KEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130 (142)
T ss_dssp CSSCHHHHHHHGGGSC-TTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred cCCCHHHHHHHHHhcc-cccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence 9999999999999887 45666656444 478999999999999999999999885
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-23 Score=172.04 Aligned_cols=138 Identities=30% Similarity=0.599 Sum_probs=121.5
Q ss_pred cccccCC-eEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhH
Q 015833 8 VQQLRRR-MTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 86 (399)
Q Consensus 8 ~~~~~p~-f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~ 86 (399)
.+..+|+ |++++.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++. .++++++|++|.+.+.+.++.
T Consensus 3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~ 81 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYY 81 (144)
T ss_dssp TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHH
T ss_pred hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHH
Confidence 4677999 99999999999999999999999999999999999999999999999852 149999999999999999999
Q ss_pred hcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEc-CCCCCCCeeeccchhhhhhcCC-CCCCCC
Q 015833 87 ACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPFT 149 (399)
Q Consensus 87 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid-~~~~~G~i~~~~~~~~i~~~g~-~~~p~~ 149 (399)
++++|..+++...+....+.+.|+|.++|+++|+| + +|+++...+...+..... ..+||.
T Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (144)
T 1i5g_A 82 AKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD---SGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp TTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETT---TCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECC---CCcEEeccchhhhhhCcccccCCCC
Confidence 99999888886545558999999999999999999 9 999999988777666543 345553
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-23 Score=173.56 Aligned_cols=126 Identities=37% Similarity=0.692 Sum_probs=115.3
Q ss_pred hhcCCCC-ccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRG-YLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~-f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
++..+|+ |++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++++. .++.|++|++|.+
T Consensus 3 ~~~~~P~~f~l~~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--------~~~~vv~v~~d~~ 73 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAA-DIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISWDES 73 (144)
T ss_dssp TTTSCSSCSEEEETTEE-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSS
T ss_pred hhhhCCCceEEEcCCCC-EecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CCEEEEEEeCCCC
Confidence 5678999 999 99999 99999999999999999999999999999999999999742 2799999999999
Q ss_pred HHHHHHHHhcCCCcccccCC-chhHHHHHhCCCCccceEEEEC-CCCcEEecccchhhh
Q 015833 251 QTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLIN 307 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~-d~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~~ 307 (399)
.+.+++++++++|..+|+.. |....+++.|++.++|+++||| ++|+++.+.++..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~ 132 (144)
T 1i5g_A 74 AEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHH
T ss_pred HHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhh
Confidence 99999999999999999987 5678999999999999999999 999999998765543
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=172.04 Aligned_cols=118 Identities=14% Similarity=0.267 Sum_probs=109.3
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+ +++++++. ++.+++|++
T Consensus 2 ~~G~~~p~f~l~~~~g~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~---------~~~~v~v~~ 71 (142)
T 3ewl_A 2 NAGMKAADFTYVTVHGD-NSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG---------TLRVLAIYP 71 (142)
T ss_dssp CTTSBCCCCEEECTTCC-EEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT---------SEEEEEEEC
T ss_pred CCCCcCCCCEEECCCCC-EEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC---------CeEEEEEEe
Confidence 36899999999 99999 999999999999999999999999999999998 99999866 799999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHH--hCCCCccceEEEECCCCcEEec
Q 015833 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTK--YFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~--~~~v~~~P~~~lid~~G~i~~~ 300 (399)
|.+.+.+++++++++ +.+|+..|....+.. .|++.++|+++|||++|+++.+
T Consensus 72 d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 72 DENREEWATKAVYMP-QGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp SSCHHHHHHHHTTSC-TTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred cCCHHHHHHHHHHcC-CCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence 999999999999888 588888888777776 9999999999999999999985
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=179.56 Aligned_cols=139 Identities=32% Similarity=0.611 Sum_probs=123.2
Q ss_pred ccccccCCe-EEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHh
Q 015833 7 YVQQLRRRM-TSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 85 (399)
Q Consensus 7 ~~~~~~p~f-~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~ 85 (399)
.+|..+|+| ++.+.+| ++++++++||++||+||++||++|+.++|.|+++++++++.. +++|++|++|.+.+.+.++
T Consensus 23 ~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~v~vv~v~~d~~~~~~~~~ 100 (165)
T 3s9f_A 23 GVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSK-NFEIILASWDEEEDDFNAY 100 (165)
T ss_dssp HHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHH
T ss_pred hhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCC-CeEEEEEecCCCHHHHHHH
Confidence 467899999 9999999 999999999999999999999999999999999999998632 5999999999999999999
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCC-CCeeeccchhhh-hhcCCCCCCCCh
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVELI-YKYGIRAFPFTK 150 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~-G~i~~~~~~~~i-~~~g~~~~p~~~ 150 (399)
.++++|..+++...+....+++.|+|.++|+++|||+ + |+++.+.+...+ .+.....|||..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~---~~G~iv~~~~~~~~~~d~~~~~fpw~~ 164 (165)
T 3s9f_A 101 YAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNA---DTGDTVTTRARHALTQDPMGEQFPWRD 164 (165)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred HHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeC---CCCEEEecccHHHHhhCcccccCCCCC
Confidence 9999999888876665589999999999999999999 8 999999886554 444555677753
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=172.20 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=109.3
Q ss_pred cccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHH---HHHHHhcCCCcEEEEEEecCCChH
Q 015833 4 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDEDLN 80 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~ii~Vs~D~~~~ 80 (399)
.+..+|..+|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|++ +++++++.+ +++++|+.|.+.+
T Consensus 3 ~~~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~--~~vi~i~~d~~~~ 80 (142)
T 3eur_A 3 AKNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEELD 80 (142)
T ss_dssp CTTCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS--EEEEEEECSSCHH
T ss_pred hhhcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC--eEEEEEEcCCCHH
Confidence 34578999999999999999999999999999999999999999999999999 999998765 9999999999999
Q ss_pred HHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+.++.++++.......|......+.+.|++.++|+++|+|+ +|+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 130 (142)
T 3eur_A 81 EWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDK---NKTVLLKD 130 (142)
T ss_dssp HHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECT---TCBEEEEE
T ss_pred HHHHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECC---CCcEEecC
Confidence 999999987742222224443356889999999999999999 99999764
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=172.37 Aligned_cols=119 Identities=24% Similarity=0.311 Sum_probs=109.2
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|.++ ++.|++|++|.+
T Consensus 4 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~ 73 (152)
T 2lrn_A 4 ATGSVAPAITGIDLKGN-SVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK---------GFTIYGVSTDRR 73 (152)
T ss_dssp CTTEECCCCEEECSSSC-EEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT---------TEEEEEEECCSC
T ss_pred cCCCcCCCceeEcCCCC-EEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC---------CeEEEEEEccCC
Confidence 36888999999 99999 99999999999999999999999999999999999999865 799999999988
Q ss_pred HHHHHHHHhcCCCcccccCCch---hHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 251 QTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+.+++++++.+ +.+|+..|. ...+++.|++.++|+++|||++|+++.+.
T Consensus 74 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 126 (152)
T 2lrn_A 74 EEDWKKAIEEDK-SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE 126 (152)
T ss_dssp HHHHHHHHHHHT-CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred HHHHHHHHHHhC-CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence 899999998766 567777776 78999999999999999999999999884
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=171.32 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=109.0
Q ss_pred hhhcCCCCccc-CCCCCceeecc--ccCCcEEEEEEecCCChh--hhhhHHHHHHHHHHH-HhhhhhcCCCCCCEEEEEE
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIP--CEKFMPKLLSIYQKI-KQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~--~~~gk~vll~F~a~wC~~--C~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~vv~i 245 (399)
.+|.++|+|++ +.+|+ .++++ +++||+++|+||++||++ |+.++|.|.+++++| +++ ++.+++|
T Consensus 6 ~~G~~~p~f~l~~~~g~-~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~---------~~~~v~v 75 (150)
T 3fw2_A 6 EIGKYAPFFSLPNAKGE-KITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK---------YIGMLGI 75 (150)
T ss_dssp STTSBCCCCCEEBTTCC-EECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS---------SEEEEEE
T ss_pred cCCCcCCccEeECCCCC-EEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC---------CeEEEEE
Confidence 36899999999 99999 99999 999999999999999999 999999999999999 544 7999999
Q ss_pred ecCCCHHHHHHHHhcCCCcccccCCch---hHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 246 STDRDQTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~~~~~~p~~~d~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++|.+.+.+++++++++ +.+|+..|. ...+++.|++.++|+++|||++|+++.+.
T Consensus 76 ~~d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 76 SLDVDKQQWKDAIKRDT-LDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp ECCSCHHHHHHHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred EcCCCHHHHHHHHHHhC-CCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence 99998899999999777 467776665 67999999999999999999999999885
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=169.01 Aligned_cols=137 Identities=34% Similarity=0.649 Sum_probs=120.0
Q ss_pred cccccCC-eEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhH
Q 015833 8 VQQLRRR-MTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 86 (399)
Q Consensus 8 ~~~~~p~-f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~ 86 (399)
.+..+|+ |+++|.+| .+++++++||+++|+||++||++|+.++|.|+++++++++. .++++++|++|.+.+.++++.
T Consensus 4 ~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~ 81 (146)
T 1o8x_A 4 LDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYF 81 (146)
T ss_dssp GGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHH
T ss_pred hHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc-CCeEEEEEeCCCCHHHHHHHH
Confidence 5778999 99999999 99999999999999999999999999999999999999852 149999999999999999999
Q ss_pred hcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEc-CCCCCCCeeeccchhhhhhcCC-CCCCCC
Q 015833 87 ACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPFT 149 (399)
Q Consensus 87 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid-~~~~~G~i~~~~~~~~i~~~g~-~~~p~~ 149 (399)
++++|..+++...+....+++.|+|.++|+++|+| + +|+++...+...+.+... ..++|.
T Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (146)
T 1o8x_A 82 AKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDAD---SGDVVTTRARATLVKDPEGEQFPWK 143 (146)
T ss_dssp TTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETT---TCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred HHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECC---CCeEEEecchhHHhhCCccccCCCC
Confidence 99999888875445558999999999999999999 9 999999988776655543 345554
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-23 Score=177.18 Aligned_cols=125 Identities=37% Similarity=0.766 Sum_probs=113.2
Q ss_pred hhhcCCCCc-cc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGY-LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f-~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+| .+ +.+| .+++++++||+|||+||++||++|+.++|.|.+++++|++. .++.|++|++|.
T Consensus 23 ~vG~~~P~f~~l~~~~g--~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--------~~v~vv~v~~d~ 92 (165)
T 3s9f_A 23 GVAKHLGEALKLRKQAD--TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--------KNFEIILASWDE 92 (165)
T ss_dssp HHHHHHHHTSCEEETTE--EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCC
T ss_pred hhcccCCcceeeecCCC--cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccC--------CCeEEEEEecCC
Confidence 478888999 78 7777 79999999999999999999999999999999999999852 279999999999
Q ss_pred CHHHHHHHHhcCCCcccccCCchh-HHHHHhCCCCccceEEEECCC-CcEEecccchhh
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLI 306 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~-~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~ 306 (399)
+.+++++++++++|..+|+..+.. ..+++.|+|.++|+++|||++ |+|+.+.++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~ 151 (165)
T 3s9f_A 93 EEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHAL 151 (165)
T ss_dssp SHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred CHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHH
Confidence 999999999999999999988754 899999999999999999998 999999876543
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=170.71 Aligned_cols=138 Identities=23% Similarity=0.415 Sum_probs=119.1
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 251 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 251 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++.+. ++.+++|++|.+.
T Consensus 2 ~G~~~p~~~l~~~~g~-~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~v~~d~~~ 71 (151)
T 2f9s_A 2 EGSDAPNFVLEDTNGK-RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ---------GVEIVAVNVGESK 71 (151)
T ss_dssp CCEECCCCEEECTTCC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEEESCCH
T ss_pred CCCcCCcceeEcCCCC-EEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCCH
Confidence 5788999999 99999 99999999999999999999999999999999999999865 7999999999888
Q ss_pred HHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHH
Q 015833 252 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEE 331 (399)
Q Consensus 252 ~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 331 (399)
+.++++++.++ +.+|+..|....+++.|++.++|+++|+|++|+++.+.. |. .+ .+.|.+.|+++
T Consensus 72 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-------G~----~~---~~~l~~~l~~l 136 (151)
T 2f9s_A 72 IAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVT-------GT----MT---ESMIHDYMNLI 136 (151)
T ss_dssp HHHHHHHHHHT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEE-------SC----CC---HHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEe-------CC----CC---HHHHHHHHHHH
Confidence 99999999877 578888888899999999999999999999999998743 21 12 35566666666
Q ss_pred hccC
Q 015833 332 AKNL 335 (399)
Q Consensus 332 ~~~~ 335 (399)
+...
T Consensus 137 l~~~ 140 (151)
T 2f9s_A 137 KPGE 140 (151)
T ss_dssp SCC-
T ss_pred Hhhh
Confidence 5543
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=180.60 Aligned_cols=137 Identities=24% Similarity=0.249 Sum_probs=109.7
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|.++|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|.++++++++. ++.+++||.| +
T Consensus 6 vG~~aPdF~l~~~~G~-~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~---------~~~~v~vs~d-~ 74 (157)
T 4g2e_A 6 IGELAPDFELPDTELK-KVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV---------NAVVLGISVD-P 74 (157)
T ss_dssp TTSBCCCCEEEBTTSC-EEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGC---------SSEEEEEESS-C
T ss_pred CCCCCcCeEeECCCCC-EEeHHHHCCCeEEEEecCCCCCCccccchhhccccccccccc---------CceEeeeccc-c
Confidence 6999999999 99999 99999999999999999 899999999999999999999865 8999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEecccchhhhhhcccCCCCChH
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 319 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~ 319 (399)
.+..+++.++++ +++|+..|.+.++++.|||. ..|++||||++|+|+++..+.. +..+.
T Consensus 75 ~~~~~~~~~~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~---------~~~~~ 144 (157)
T 4g2e_A 75 PFSNKAFKEHNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDD---------PTKEP 144 (157)
T ss_dssp HHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESS---------TTCCC
T ss_pred hhHHHHHHHHcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCC---------CCCCC
Confidence 677888888877 68999999999999999983 4789999999999998754322 12333
Q ss_pred HHHHHHHHHHH
Q 015833 320 KLEFLEKQMEE 330 (399)
Q Consensus 320 ~~~~l~~~~~~ 330 (399)
..+++.+.|+.
T Consensus 145 ~~~eil~~l~~ 155 (157)
T 4g2e_A 145 PYDEIEKVVKS 155 (157)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45566666553
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=174.54 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=119.8
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcE-EEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKT-VGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~-vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|..+|+|++ +.+|+ .+++++++||+ ++|+|| ++||++|..++|.|.+++++|+++ +++||+|++|
T Consensus 4 ~G~~~P~f~l~~~~G~-~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~vs~d- 72 (161)
T 3drn_A 4 VGDKAPLFEGIADNGE-KISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY---------DVVVIGVSSD- 72 (161)
T ss_dssp TTSBCCCCEEEETTSC-EEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT---------CEEEEEEESC-
T ss_pred CCCcCCCeEeecCCCC-EEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEEeCC-
Confidence 6889999999 99999 99999999997 999999 999999999999999999999866 7999999998
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCc----cceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHH
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG----IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE 325 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~----~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 325 (399)
+.+.++++.++++ +.+|+..|....+++.|++.+ +|+++|||++|+|+.+..+.. ..+..++++.
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~----------~~~~~~~~il 141 (161)
T 3drn_A 73 DINSHKRFKEKYK-LPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQM----------NPANHVNEAL 141 (161)
T ss_dssp CHHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSS----------CTTHHHHHHH
T ss_pred CHHHHHHHHHHhC-CCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCC----------CCCcCHHHHH
Confidence 6789999999887 578999898899999999999 999999999999998754311 1345566666
Q ss_pred HHHHHH
Q 015833 326 KQMEEE 331 (399)
Q Consensus 326 ~~~~~~ 331 (399)
+.++++
T Consensus 142 ~~l~~l 147 (161)
T 3drn_A 142 KALKQI 147 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=167.86 Aligned_cols=137 Identities=33% Similarity=0.602 Sum_probs=120.4
Q ss_pred ccccccCCe-EEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHh
Q 015833 7 YVQQLRRRM-TSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 85 (399)
Q Consensus 7 ~~~~~~p~f-~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~ 85 (399)
.+|..+|+| ++.|.+| .+++++++||+++|+||++||++|+.++|.|+++++++++. .++++++|++|.+.+.+.++
T Consensus 3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~i~~d~~~~~~~~~ 80 (144)
T 1o73_A 3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDY 80 (144)
T ss_dssp GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHH
T ss_pred chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHH
Confidence 367889997 9999999 99999999999999999999999999999999999999842 24999999999999999999
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEc-CCCCCCCeeeccchhhhhhcCC-CCCCC
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPF 148 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid-~~~~~G~i~~~~~~~~i~~~g~-~~~p~ 148 (399)
.++++|..+++...+....+.+.|+|.++|++++++ + +|+++...+.+.+..... ..+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~W 142 (144)
T 1o73_A 81 YGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINAD---TGAIIGTQARTRVIEDPDGANFPW 142 (144)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETT---TCCEEESCHHHHHHHCTTCTTTTC
T ss_pred HHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECC---CCeEEecchhhHHhhCCCccCCCC
Confidence 999999888886545558899999999999999999 8 999999988777655543 33555
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=170.10 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=100.9
Q ss_pred hhhcCCCCcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 015833 172 LLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 251 (399)
Q Consensus 172 ~~g~~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 251 (399)
.+|..+|+|+++.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++ ++.|++|++|.+.
T Consensus 8 ~~G~~~P~f~l~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~vv~vs~d~~~ 77 (143)
T 4fo5_A 8 NPGDLAPRIEFLGNDA-KASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD---------KIAMCSISMDEKE 77 (143)
T ss_dssp STTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT---------TEEEEEEECCSCH
T ss_pred CCcccCCceEEcCCCC-EEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC---------CEEEEEEEccCCH
Confidence 3688999999988999 99999999999999999999999999999999999999755 7999999999999
Q ss_pred HHHHHHHhcCCCccc-ccCCc---hhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 252 TSFESYFGTMPWLAL-PFGDP---TIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 252 ~~~~~~~~~~~~~~~-p~~~d---~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++++++++.+ +.+ +...| ....+++.|++.++|+++|||++|+|+.+.
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (143)
T 4fo5_A 78 SIFTETVKIDK-LDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN 130 (143)
T ss_dssp HHHHHHHHHHT-CCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred HHHHHHHHHhC-CCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence 99999998755 334 33333 357899999999999999999999999885
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=175.64 Aligned_cols=187 Identities=14% Similarity=0.191 Sum_probs=123.5
Q ss_pred cccCCCEEEEEEecC-CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 28 SDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
...++++++++||++ ||++|+.+.|.|.++++. . .++.++.|+.|.. ...+++
T Consensus 18 ~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~---~~v~~~~vd~~~~----------------------~~~~~~ 71 (226)
T 1a8l_A 18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T---DKLSYEIVDFDTP----------------------EGKELA 71 (226)
T ss_dssp GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C---TTEEEEEEETTSH----------------------HHHHHH
T ss_pred HhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C---CceEEEEEeCCCc----------------------ccHHHH
Confidence 345677889999999 999999999999998754 2 2488888866521 127899
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCee-eccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCCC
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDAT-LHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHP 185 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~-~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~ 185 (399)
++|+|.++|+++++. +|... .+. .| .+........+...... -+ ... ..+
T Consensus 72 ~~~~v~~~Pt~~~~~----~g~~~~~~~-------~G---~~~~~~l~~~l~~~l~~----------~~-~~~----~l~ 122 (226)
T 1a8l_A 72 KRYRIDRAPATTITQ----DGKDFGVRY-------FG---LPAGHEFAAFLEDIVDV----------SR-EET----NLM 122 (226)
T ss_dssp HHTTCCSSSEEEEEE----TTBCCSEEE-------ES---CCCTTHHHHHHHHHHHH----------HH-TCC----CCC
T ss_pred HHcCCCcCceEEEEc----CCceeeEEE-------ec---cCcHHHHHHHHHHHHhh----------cC-CCC----CCC
Confidence 999999999999995 45321 110 01 11111111111111100 00 000 111
Q ss_pred CCceee-ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCc
Q 015833 186 PDEKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL 264 (399)
Q Consensus 186 g~~~~~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 264 (399)
.+ .+. +....+++++|+||++||++|+.+.|.+.++++++.++ +..++.++.|++|..
T Consensus 123 ~~-~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~------~~~~v~~~~vd~~~~-------------- 181 (226)
T 1a8l_A 123 DE-TKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKA------GKGKILGDMVEAIEY-------------- 181 (226)
T ss_dssp HH-HHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHT------TCCCEEEEEEEGGGC--------------
T ss_pred HH-HHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccc------cCCcEEEEEEEcccC--------------
Confidence 11 111 12223455699999999999999999999999998731 012578888877744
Q ss_pred ccccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 265 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 265 ~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+++.|+|.++||++++ ++|+.+.+
T Consensus 182 ---------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 207 (226)
T 1a8l_A 182 ---------PEWADQYNVMAVPKIVIQ-VNGEDRVE 207 (226)
T ss_dssp ---------HHHHHHTTCCSSCEEEEE-ETTEEEEE
T ss_pred ---------HHHHHhCCCcccCeEEEE-eCCceeEE
Confidence 678999999999999888 78988765
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=169.88 Aligned_cols=120 Identities=14% Similarity=0.218 Sum_probs=110.3
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
.+|.++|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++ ++.+++|++|.+
T Consensus 6 ~~G~~~p~~~l~~~~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~ 75 (148)
T 3hcz_A 6 LLGKKAPNLYMTDTTGT-YRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK---------GIQVYAANIERK 75 (148)
T ss_dssp CTTSBCCCCCCBCTTSC-BCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG---------TEEEEEEECCSS
T ss_pred CCCCcCCceEEecCCCC-EEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC---------CEEEEEEEecCC
Confidence 47899999999 99999 99999999999999999999999999999999999999876 799999999988
Q ss_pred HHHHHHHHhcCCCcccccCCchhHH--HHHhCCCCccceEEEECCCCcEEecc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKE--LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~--~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+.++++++++++..+++..|.... +++.|++.++|+++|+|++|+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 128 (148)
T 3hcz_A 76 DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKR 128 (148)
T ss_dssp SHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEES
T ss_pred HHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEec
Confidence 8899999998885557777776666 99999999999999999999999874
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=181.26 Aligned_cols=168 Identities=10% Similarity=0.053 Sum_probs=131.2
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCc-EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 248 (399)
.+|..+|+|++ +.+|+ .+++++++|| +|||+||++||++|+.++|.|.+++++|+++ +++||+|++|
T Consensus 33 ~~G~~aP~f~l~~~~G~-~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~Vs~d~ 102 (218)
T 3u5r_E 33 TLGTRAADFVLPDAGGN-LFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ---------GLAVVAINSND 102 (218)
T ss_dssp CTTCBCCCCCEECTTCC-EECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT---------TEEEEEEECSC
T ss_pred CCCCcCCCcEeECCCCC-EEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC---------CcEEEEEECCc
Confidence 36899999999 99999 9999999999 5999999999999999999999999999865 7999999996
Q ss_pred ------CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHH
Q 015833 249 ------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLE 322 (399)
Q Consensus 249 ------~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 322 (399)
.+.+.+++++++++ +.+|+..|....+++.|++.++|+++|||++|+|+++...+.. ..+ . ......+
T Consensus 103 ~~~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~-~~~-~---~~~~~~~ 176 (218)
T 3u5r_E 103 AQAFPEETLERVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDA-RPG-N---GKDVTGA 176 (218)
T ss_dssp TTTCGGGSHHHHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSC-CTT-S---CCCCCCH
T ss_pred ccccccCCHHHHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEecccccc-ccc-c---ccccCHH
Confidence 57888999998877 6889998988999999999999999999999999987433221 000 0 0111235
Q ss_pred HHHHHHHHHhccCCCcccccccccceeeeecCCCC
Q 015833 323 FLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGG 357 (399)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (399)
+|.+.|++++.+.+... ...+...|++.|..+.
T Consensus 177 ~l~~~i~~ll~~~~~~~--~~~~~~GC~i~w~~~~ 209 (218)
T 3u5r_E 177 DLRAAVDAVLKGKDVGT--TQVPSIGCNIKWTAGN 209 (218)
T ss_dssp HHHHHHHHHHTTCCCCS--CCCCCEEEECCCCCC-
T ss_pred HHHHHHHHHHcCCCCCc--CCcCCCCeeEEeCCCC
Confidence 66777777766544322 2223445777666543
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=168.20 Aligned_cols=139 Identities=24% Similarity=0.398 Sum_probs=120.4
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 251 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 251 (399)
+|..+|+|.+ + +|+ .+++++++||+++|+||++||++|+.++|.|.+++++++++ ++.+++|++|.+.
T Consensus 5 ~G~~~P~f~l~~-~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~~ 73 (152)
T 3gl3_A 5 KGDKAPDFALPG-KTG-VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK---------GFQVVAVNLDAKT 73 (152)
T ss_dssp TTSBCCCCEEEB-SSS-EEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG---------TEEEEEEECCSSH
T ss_pred CCCcCCceEeeC-CCC-eEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEECCCCH
Confidence 6889999999 8 999 99999999999999999999999999999999999999876 7999999999999
Q ss_pred HHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHH
Q 015833 252 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEE 331 (399)
Q Consensus 252 ~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 331 (399)
+.+++++++++ +.+++..|....+++.|++.++|+++|||++|+++.+..+ ......++|.+.|++.
T Consensus 74 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g------------~~~~~~~~l~~~i~~~ 140 (152)
T 3gl3_A 74 GDAMKFLAQVP-AEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVG------------FRPADKEALEQQILAA 140 (152)
T ss_dssp HHHHHHHHHSC-CCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEES------------CCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEcc------------CCCcCHHHHHHHHHHH
Confidence 99999999888 5788888888899999999999999999999999987432 1223346677777765
Q ss_pred hccC
Q 015833 332 AKNL 335 (399)
Q Consensus 332 ~~~~ 335 (399)
+...
T Consensus 141 ~~~~ 144 (152)
T 3gl3_A 141 LGGN 144 (152)
T ss_dssp TC--
T ss_pred Hccc
Confidence 5443
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=170.16 Aligned_cols=137 Identities=13% Similarity=0.229 Sum_probs=114.3
Q ss_pred hhcCCCCccc-C--CCCCceeeccccCCcEEEEEEecCCChhhhhh-HHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 173 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 173 ~g~~~p~f~l-~--~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.|..+|+|++ + .+|+ .+++++++||+++|+||++||++|+.+ +|.|.+++++|++. ++.+++|++|
T Consensus 2 ~g~~aP~f~l~~~~~~g~-~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~---------~v~~v~v~~~ 71 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSAT-DLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED---------KVAVLGLHTV 71 (158)
T ss_dssp CCEECCCCCEEEEESCSS-CCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT---------TEEEEEEECC
T ss_pred CCCcCCCceehhhhcCCC-ccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC---------CEEEEEEEec
Confidence 3678999999 6 3788 999999999999999999999999997 99999999999755 7999999984
Q ss_pred ------CCHHHHHHHHhcCCCcccccCCchhH-----HHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCC
Q 015833 249 ------RDQTSFESYFGTMPWLALPFGDPTIK-----ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 317 (399)
Q Consensus 249 ------~~~~~~~~~~~~~~~~~~p~~~d~~~-----~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 317 (399)
.+.+.+++++++++ +.+|+..|... .+++.|++.++|+++|||++|+++.+..+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~ 139 (158)
T 3eyt_A 72 FEHHEAMTPISLKAFLHEYR-IKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGD-----------VS 139 (158)
T ss_dssp CSCGGGSCHHHHHHHHHHTT-CCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESC-----------CC
T ss_pred ccccccCCHHHHHHHHHHcC-CCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC-----------CC
Confidence 47888999999887 56788777655 799999999999999999999999874321 12
Q ss_pred hHHHHHHHHHHHHHhcc
Q 015833 318 EAKLEFLEKQMEEEAKN 334 (399)
Q Consensus 318 ~~~~~~l~~~~~~~~~~ 334 (399)
. ++|.+.|+++++.
T Consensus 140 ~---~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 140 E---LLLGAEIATLLGE 153 (158)
T ss_dssp H---HHHHHHHHHHHTS
T ss_pred H---HHHHHHHHHHhcc
Confidence 2 4566666666654
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=166.98 Aligned_cols=119 Identities=19% Similarity=0.318 Sum_probs=108.8
Q ss_pred hhhcCCCCccc-CCCCCceeecc--ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHH-HhhhhhcCCCCCCEEEEEEec
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKI-KQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+|.++|+|.+ +.+|+ .++++ +++||+++|+||++||++|+.++|.|.+++++| .++ ++.+++|++
T Consensus 6 ~~g~~~p~~~l~~~~g~-~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~---------~~~~v~v~~ 75 (148)
T 3fkf_A 6 TVGKSAPYFSLPNEKGE-KLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK---------NFAMLGISL 75 (148)
T ss_dssp CTTSBCCCCCEEBTTSC-EECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT---------TEEEEEEEC
T ss_pred cCCCcCCCeEeeCCCCC-EEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC---------CeEEEEEEC
Confidence 46899999999 99999 99999 999999999999999999999999999999999 644 799999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCch---hHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 248 DRDQTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p~~~d~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
|.+.+.++++++.++ +.+|+..|. ...+++.|++.++|+++|+|++|+++.+.
T Consensus 76 d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 76 DIDREAWETAIKKDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD 131 (148)
T ss_dssp CSCHHHHHHHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred CCCHHHHHHHHHHcC-CCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence 999999999998877 467776665 77999999999999999999999999884
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-22 Score=167.22 Aligned_cols=124 Identities=40% Similarity=0.763 Sum_probs=112.7
Q ss_pred hhcCCCC-ccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRG-YLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~-f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
++..+|+ |++ +.+| .+++++++||+++|+||++||++|+.++|.|.++++++++. .++.|++|++|.+
T Consensus 4 ~~~~~P~~f~l~~~~g--~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--------~~~~vv~v~~d~~ 73 (146)
T 1o8x_A 4 LDKYLPGIEKLRRGDG--EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCTWDEE 73 (146)
T ss_dssp GGGTSTTCCEEEETTE--EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCCS
T ss_pred hHhhCCCceEEEcCCC--CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc--------CCeEEEEEeCCCC
Confidence 5778999 899 8888 79999999999999999999999999999999999999742 2799999999999
Q ss_pred HHHHHHHHhcCCCcccccCC-chhHHHHHhCCCCccceEEEEC-CCCcEEecccchhh
Q 015833 251 QTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLI 306 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~-d~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~ 306 (399)
.+.+++++++++|..+|+.. |....+++.|+|.++|+++|+| ++|+++.+.++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~ 131 (146)
T 1o8x_A 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131 (146)
T ss_dssp HHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred HHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHH
Confidence 99999999999999999886 5678999999999999999999 89999999876554
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=171.55 Aligned_cols=139 Identities=14% Similarity=0.198 Sum_probs=116.7
Q ss_pred HhhhcCCCCccc-C-CCCCceeeccccCCcEEEEEEecCCChhhhhh-HHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 171 NLLTNHDRGYLL-G-HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 171 ~~~g~~~p~f~l-~-~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+.|.++|+|.+ + .+|+ .+++++++||+++|+||++||++|+.+ +|.|.+++++|+++ ++.+++|++
T Consensus 3 ~~~g~~~p~~~~~~~~~g~-~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~---------~v~~v~v~~ 72 (160)
T 3lor_A 3 SLDNAPLLELDVQEWVNHE-GLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES---------QVQVIGLHS 72 (160)
T ss_dssp -CTTCCBCCCCEEEESSSC-CCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT---------TEEEEEEEC
T ss_pred ccCCCcCCCcccccccCCC-ccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC---------CcEEEEEec
Confidence 456889999999 6 8999 999999999999999999999999995 99999999999765 799999998
Q ss_pred C------CCHHHHHHHHhcCCCcccccCCchhHH------HHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCC
Q 015833 248 D------RDQTSFESYFGTMPWLALPFGDPTIKE------LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYP 315 (399)
Q Consensus 248 d------~~~~~~~~~~~~~~~~~~p~~~d~~~~------~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p 315 (399)
| .+.+.+++++++++ +.+|+..|.... +++.|++.++|+++|||++|+++.+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~----------- 140 (160)
T 3lor_A 73 VFEHHDVMTPEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQ----------- 140 (160)
T ss_dssp CCSCGGGSCHHHHHHHHHHTT-CCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESC-----------
T ss_pred cccccccCCHHHHHHHHHHcC-CCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCc-----------
Confidence 4 57889999999887 568887776666 99999999999999999999999874331
Q ss_pred CChHHHHHHHHHHHHHhcc
Q 015833 316 FTEAKLEFLEKQMEEEAKN 334 (399)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~ 334 (399)
.+. ++|.+.|+++++.
T Consensus 141 ~~~---~~l~~~i~~ll~~ 156 (160)
T 3lor_A 141 VDD---FVLGLLLGSLLSE 156 (160)
T ss_dssp CCH---HHHHHHHHHHHTC
T ss_pred CCH---HHHHHHHHHHHhc
Confidence 122 4566666666553
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=165.35 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=104.3
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHH---HHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
.+|..+|+|++++.+|+++++++++||+++|+||++||++|+.++|.|.+ +++++++.+ +++++|++|.+.+.+.
T Consensus 2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~--~~~v~v~~d~~~~~~~ 79 (142)
T 3ewl_A 2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEWA 79 (142)
T ss_dssp CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS--EEEEEEECSSCHHHHH
T ss_pred CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC--eEEEEEEecCCHHHHH
Confidence 46899999999999999999999999999999999999999999999998 999998865 9999999999999999
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++.+++++......|........+.|++.++|+++|+|+ +|+++..
T Consensus 80 ~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 125 (142)
T 3ewl_A 80 TKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDG---RKRVILK 125 (142)
T ss_dssp HHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECT---TCBEEEC
T ss_pred HHHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECC---CCCEEec
Confidence 999987753332334432222245999999999999999 9999874
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=170.59 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=119.6
Q ss_pred hhhcCCCCcc--c-CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 172 LLTNHDRGYL--L-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 172 ~~g~~~p~f~--l-~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+|.++|+|+ + +.+|+ .+++++++||+++|+||+ +||++|..++|.|.+++++|+++ +++|++|++
T Consensus 8 ~~G~~~P~f~~~l~~~~G~-~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~vv~vs~ 77 (163)
T 3gkn_A 8 VLELPAATFDLPLSLSGGT-QTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA---------GAKILGVSR 77 (163)
T ss_dssp CCCCCGGGGGCCEECSTTC-EECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT---------TCEEEEEES
T ss_pred ccCCcCCCccccccCCCCC-EEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC---------CCEEEEEeC
Confidence 4689999999 9 99999 999999999999999998 99999999999999999999876 799999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCc------------cceEEEECCCCcEEecccchhhhhhcccCCC
Q 015833 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG------------IPCLVIIGPEGKTVTKQGRNLINLYQENAYP 315 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p 315 (399)
| +.+.++++.++++ +.+|+..|....+++.|++.. +|++||||++|+|+....+ .
T Consensus 78 d-~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~-----------~ 144 (163)
T 3gkn_A 78 D-SVKSHDNFCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRK-----------V 144 (163)
T ss_dssp S-CHHHHHHHHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECS-----------C
T ss_pred C-CHHHHHHHHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcC-----------C
Confidence 8 7888899988776 678998898899999999987 9999999999999987521 1
Q ss_pred CChHHHHHHHHHHHHHh
Q 015833 316 FTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 316 ~~~~~~~~l~~~~~~~~ 332 (399)
.....++++.+.++++.
T Consensus 145 ~~~~~~~~il~~l~~l~ 161 (163)
T 3gkn_A 145 KVAGHADAVLAALKAHA 161 (163)
T ss_dssp CSTTHHHHHHHHHHHHC
T ss_pred CcccCHHHHHHHHHHHh
Confidence 23345667777776543
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=164.03 Aligned_cols=125 Identities=44% Similarity=0.791 Sum_probs=112.6
Q ss_pred hhhcCCCCc-cc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGY-LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f-~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+| ++ +.+| .+++++++||+++|+||++||++|+.++|.|.++++++++. .++.|++|++|.
T Consensus 3 ~~g~~~p~~~~l~~~~g--~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--------~~~~vv~i~~d~ 72 (144)
T 1o73_A 3 GLAKYLPGATNLLSKSG--EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISWDE 72 (144)
T ss_dssp GGGGTSCTTCCBBCTTS--CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCS
T ss_pred chhhhCccceEeecCCC--cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC--------CCEEEEEEeCCC
Confidence 368889997 88 8888 69999999999999999999999999999999999999732 279999999999
Q ss_pred CHHHHHHHHhcCCCcccccCC-chhHHHHHhCCCCccceEEEEC-CCCcEEecccchhh
Q 015833 250 DQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLI 306 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~-d~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~ 306 (399)
+.+.+++++++++|..+|+.. +....+++.|+|.++|+++|+| ++|+++.+.++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~ 131 (144)
T 1o73_A 73 NESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131 (144)
T ss_dssp SHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred CHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHH
Confidence 999999999999999999886 5678899999999999999999 89999999766443
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-23 Score=180.31 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=118.3
Q ss_pred hhcCCCCccc-CCCCCceeecccc--CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSL--VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~--~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
+|.++|+|++ +.+|+ .++++++ +||+++|+|| ++|||+|..++|.|.+++++|++. ++.+++||.|
T Consensus 7 vG~~aPdF~l~~~~G~-~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~---------~v~vv~is~d 76 (164)
T 4gqc_A 7 LGEKAPDFTLPNQDFE-PVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA---------NAEVLAISVD 76 (164)
T ss_dssp TTSBCCCCEEEBTTSC-EEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS---------SSEEEEEESS
T ss_pred CCCCCcCcEeECCCCC-EEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc---------CceEEEecCC
Confidence 6999999999 99999 9999998 8999999998 999999999999999999999876 8999999998
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC----------ccceEEEECCCCcEEecccchhhhhhcccCCCCCh
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ----------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 318 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~----------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 318 (399)
+.+..+++.++++ ++||+..|.+.++++.|||. ..|++||||++|+|++++.+.. +..+
T Consensus 77 -~~~~~~~~~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~---------~~~~ 145 (164)
T 4gqc_A 77 -SPWCLKKFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDN---------PLNE 145 (164)
T ss_dssp -CHHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSC---------TTCC
T ss_pred -CHHHHHHHHHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCC---------CCCC
Confidence 6778888888777 68999999999999999983 4789999999999998753322 2333
Q ss_pred HHHHHHHHHHHHHhcc
Q 015833 319 AKLEFLEKQMEEEAKN 334 (399)
Q Consensus 319 ~~~~~l~~~~~~~~~~ 334 (399)
...+++.+.+++++++
T Consensus 146 ~~~~eil~~l~~l~~e 161 (164)
T 4gqc_A 146 PDYDEVVREANKIAGE 161 (164)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcc
Confidence 3456666666665543
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=164.21 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=105.0
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
..|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++ ++.|++|++|..
T Consensus 10 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~vv~i~~d~~ 79 (152)
T 2lrt_A 10 IKEASIIDIQLKDLKGN-TRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ---------GFEIYQISLDGD 79 (152)
T ss_dssp SCTTCSCCCCEEBTTSC-EECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEECSCC
T ss_pred ccCCCCCCeEEEcCCCC-EEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC---------CeEEEEEEccCC
Confidence 45788999999 99999 99999999999999999999999999999999999999876 799999999998
Q ss_pred HHHHHHHHhcCCCcccccCCchhH---HHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIK---ELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~---~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+.++++....+ +|+..|... .+++.|++.++|+++|||++|+++.+..
T Consensus 80 ~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 131 (152)
T 2lrt_A 80 EHFWKTSADNLP---WVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGE 131 (152)
T ss_dssp HHHHHHHHTTCS---SEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETT
T ss_pred HHHHHHHHhCCC---ceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecC
Confidence 888888887644 555555444 4999999999999999999999998853
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-22 Score=168.46 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=101.3
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
...+|..+|+|++ +.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++|.+.+.+.+
T Consensus 6 ~l~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~ 82 (143)
T 4fo5_A 6 GVNPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTE 82 (143)
T ss_dssp SSSTTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT--EEEEEEECCSCHHHHHH
T ss_pred ccCCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC--EEEEEEEccCCHHHHHH
Confidence 4568999999999 99999999999999999999999999999999999999999998765 99999999999999999
Q ss_pred hHhcCCCcc-cccCChH-HHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 85 YRACMPWLA-VPYSDLE-TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~~~~~~~-~~~~d~~-~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.++.+... ..+.|.. ....+.+.|++.++|+++|||+ +|+++...
T Consensus 83 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 130 (143)
T 4fo5_A 83 TVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLIND---EGVIIAAN 130 (143)
T ss_dssp HHHHHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECT---TSBEEEES
T ss_pred HHHHhCCCCceeeecccccchHHHHHcCCCCCCcEEEECC---CCEEEEcc
Confidence 999655322 1112322 2368999999999999999999 99999764
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=165.46 Aligned_cols=138 Identities=18% Similarity=0.286 Sum_probs=115.3
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
..|.++|+|.+ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++++++ ++.+++|++|.+
T Consensus 9 ~~g~~~p~~~l~~~~g~-~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~v~~v~v~~d~~ 78 (165)
T 3or5_A 9 ARPTPAPSFSGVTVDGK-PFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR---------GFTFVGIAVNEQ 78 (165)
T ss_dssp CCCCBCCCCEEECTTSC-EEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---------TEEEEEEECSCC
T ss_pred cCCCCCCCceeeCCCCC-EechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCC
Confidence 46889999999 99999 99999999999999999999999999999999999999865 799999999988
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhC------CCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHH
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYF------DVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 324 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~------~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 324 (399)
.+.+++++++.+ +.+|+..+.. .+.+.| ++.++|+++|||++|+++.+..+. .+ .+.+
T Consensus 79 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l 142 (165)
T 3or5_A 79 LPNVKNYMKTQG-IIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGP-----------RS---KADF 142 (165)
T ss_dssp HHHHHHHHHHHT-CCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSC-----------CC---HHHH
T ss_pred HHHHHHHHHHcC-CCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCC-----------CC---HHHH
Confidence 999999998776 5677766654 777777 899999999999999999874321 12 3556
Q ss_pred HHHHHHHhccC
Q 015833 325 EKQMEEEAKNL 335 (399)
Q Consensus 325 ~~~~~~~~~~~ 335 (399)
.+.|++++++.
T Consensus 143 ~~~l~~~l~~~ 153 (165)
T 3or5_A 143 DRIVKMALGAK 153 (165)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 66666666544
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=165.92 Aligned_cols=120 Identities=25% Similarity=0.449 Sum_probs=110.2
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
.+|.++|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++.+. ++.+++|++|.+
T Consensus 3 ~~G~~~p~~~l~~~~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~~ 72 (154)
T 3kcm_A 3 LEENPAPDFTLNTLNGE-VVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK---------PFRMLCVSIDEG 72 (154)
T ss_dssp CTTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---------SEEEEEEECCTT
T ss_pred CCCCCCCCeEEEcCCCC-EEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEEcCCc
Confidence 46899999999 99999 99999999999999999999999999999999999999764 799999999987
Q ss_pred -HHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 251 -QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 -~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+.++++++.++ +.+|+..|....+++.|++.++|+++|||++|+++.+..
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 124 (154)
T 3kcm_A 73 GKVAVEEFFRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVV 124 (154)
T ss_dssp HHHHHHHHHHHHC-CCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEE
T ss_pred chHHHHHHHHHcC-CCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEc
Confidence 788888888776 578888888899999999999999999999999998743
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=169.51 Aligned_cols=117 Identities=9% Similarity=0.131 Sum_probs=106.7
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 248 (399)
.+|..+|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|++ . +.|++|++|
T Consensus 8 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---------~-~~~v~v~~d~~ 76 (188)
T 2cvb_A 8 PLESPLIDAELPDPRGG-RYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG---------K-VAFVGINANDY 76 (188)
T ss_dssp CTTCBCCCCEEECTTSC-EEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT---------T-EEEEEEECCCT
T ss_pred CCCCCCCCceeecCCCC-EEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhc---------C-eEEEEEEcCcc
Confidence 36889999999 99999 9999999999999999999999999999999999999863 2 899999996
Q ss_pred -----CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 249 -----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 249 -----~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.+.+.+++++++++ +.+|+..|....+++.|++.++|+++|||++|+++.+
T Consensus 77 ~~~~~d~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 77 EKYPEDAPEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp TTCGGGSHHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred ccccccCHHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence 36778899988877 5788888888999999999999999999999999988
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=163.82 Aligned_cols=120 Identities=20% Similarity=0.372 Sum_probs=109.2
Q ss_pred hhcCCC-Cccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDR-GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p-~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|.++| +|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++.+. ++.+++|++|.+
T Consensus 5 ~G~~~p~~f~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~ 74 (152)
T 2lja_A 5 SGNPSAASFSYPDINGK-TVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK---------DIHFVSLSCDKN 74 (152)
T ss_dssp TTCCCSSSCEEEETTTE-EEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS---------SEEEEEEECCSC
T ss_pred cCCCCCcccEeecCCCC-EeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC---------CeEEEEEEccCc
Confidence 688999 9999 99999 99999999999999999999999999999999999998754 799999999988
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+.+++++++.++..+++..|....+++.|++.++|+++|+|++|+++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 126 (152)
T 2lja_A 75 KKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANM 126 (152)
T ss_dssp HHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSC
T ss_pred HHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccC
Confidence 8899999987775556677777889999999999999999999999998853
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=162.88 Aligned_cols=123 Identities=16% Similarity=0.270 Sum_probs=108.2
Q ss_pred cccccccccCCeEEecCCCCEEecc--ccCCCEEEEEEecCCCcc--cHhhHHHHHHHHHHH-hcCCCcEEEEEEecCCC
Q 015833 4 SQWYVQQLRRRMTSTKEIGEEVKVS--DLEGKVTALYFSANWYPP--CGNFTGVLVDVYEEL-RNNGSDFEVVFVSSDED 78 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G~~v~l~--~~~gk~vlv~F~a~wC~~--C~~~~p~l~~l~~~~-~~~~~~~~ii~Vs~D~~ 78 (399)
....+|..+|+|+++|.+|++++++ +++||+++|+||++||++ |+.++|.|+++++++ ++.+ +++++|++|.+
T Consensus 3 ~~l~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~ 80 (150)
T 3fw2_A 3 AKSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY--IGMLGISLDVD 80 (150)
T ss_dssp CTTSTTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS--EEEEEEECCSC
T ss_pred ccccCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC--eEEEEEEcCCC
Confidence 3457899999999999999999999 999999999999999999 999999999999999 6665 99999999999
Q ss_pred hHHHHHhHhcCC--CcccccCCh-HHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 79 LNAFNNYRACMP--WLAVPYSDL-ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 79 ~~~~~~~~~~~~--~~~~~~~d~-~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+.++++.++++ |..+. |. .....+.+.|++.++|+++|||+ +|+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 133 (150)
T 3fw2_A 81 KQQWKDAIKRDTLDWEQVC--DFGGLNSEVAKQYSIYKIPANILLSS---DGKILAKN 133 (150)
T ss_dssp HHHHHHHHHHTTCCSEEEC--CSCGGGCHHHHHTTCCSSSEEEEECT---TSBEEEES
T ss_pred HHHHHHHHHHhCCCceEEE--cCcccchHHHHHcCCCccCeEEEECC---CCEEEEcc
Confidence 999999999665 44332 32 12368999999999999999999 99999775
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.9e-21 Score=174.26 Aligned_cols=120 Identities=9% Similarity=0.129 Sum_probs=100.2
Q ss_pred ccccccccCCeEEecC-CCC--EEeccc-cCCCEEEEEEe-cCCCcccH-hhHHHHHHHHHHHhcCCCcE-EEEEEecCC
Q 015833 5 QWYVQQLRRRMTSTKE-IGE--EVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDF-EVVFVSSDE 77 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~-~G~--~v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~-~ii~Vs~D~ 77 (399)
...+|..+|+|++++. +|+ +++|++ ++||+++|+|| ++|||+|+ .++|.|+++++++++.| + +|++||.|.
T Consensus 2 ~~~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d~ 79 (241)
T 1nm3_A 2 SSMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVND 79 (241)
T ss_dssp -CCTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSC
T ss_pred CccCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcCC
Confidence 3457999999999996 787 899999 89999999999 99999999 99999999999999876 9 999999985
Q ss_pred ChHHHHHhHhcCCCcccc-cCChHHHHHHHhhcCCC-----------CcCeEEEEcCCCCCCCeeecc
Q 015833 78 DLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+..+++.++.+...+| ++|.+ ..+++.||+. ..|++++| + +|+|+...
T Consensus 80 -~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~---~G~i~~~~ 140 (241)
T 1nm3_A 80 -TFVMNAWKEDEKSENISFIPDGN--GEFTEGMGMLVGKEDLGFGKRSWRYSMLV-K---NGVVEKMF 140 (241)
T ss_dssp -HHHHHHHHHHTTCTTSEEEECTT--SHHHHHTTCEEECTTTTCCEEECCEEEEE-E---TTEEEEEE
T ss_pred -HHHHHHHHHhcCCCceEEEECCC--cHHHHHhCceeecccccCcccceeEEEEE-E---CCEEEEEE
Confidence 67788888877653222 23443 7889999985 45899999 8 99998764
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=172.49 Aligned_cols=161 Identities=12% Similarity=0.149 Sum_probs=125.1
Q ss_pred hhhcCCCCccc-CC-CC--CceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL-GH-PP--DEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~~-~g--~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|..+|+|++ +. +| + .+++++++||++||+||+ +||++|..++|.|.+++++|+++ +++|++|+
T Consensus 2 ~~G~~aP~f~l~~~~~G~~~-~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~---------~v~vv~Is 71 (186)
T 1n8j_A 2 LINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL---------GVDVYSVS 71 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEE-EEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT---------TEEEEEEE
T ss_pred CCCCcCCCcEeecccCCcce-EEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 36889999999 77 58 8 999999999999999995 89999999999999999999876 79999999
Q ss_pred cCCCHHHHHHHHhcCC---CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccCCCCC
Q 015833 247 TDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 317 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~---~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 317 (399)
+| +.+..++|.++++ .++||+..|....+++.|++. .+|++||||++|+|+.+..+.+ . .
T Consensus 72 ~d-~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~-------~---~ 140 (186)
T 1n8j_A 72 TD-THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE-------G---I 140 (186)
T ss_dssp SS-CHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT-------T---B
T ss_pred CC-CHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCC-------C---C
Confidence 98 5667788888772 367888889889999999997 4799999999999998854321 1 0
Q ss_pred hHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCCCe
Q 015833 318 EAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPF 360 (399)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (399)
....+++.+.|+.+.. ...++...++..|..|....
T Consensus 141 ~~~~~~l~~~l~~l~~-------~~~~p~~~~p~~w~~~~~~~ 176 (186)
T 1n8j_A 141 GRDASDLLRKIKAAQY-------VAAHPGEVCPAKWKEGEATL 176 (186)
T ss_dssp CCCHHHHHHHHHHHHH-------HHHSTTCBBCTTCCTTSCCB
T ss_pred CCCHHHHHHHHHHHHH-------HhhcCCCccCCCCCCCCccc
Confidence 1123455555554332 22334566777777665543
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=163.55 Aligned_cols=142 Identities=21% Similarity=0.274 Sum_probs=118.0
Q ss_pred HhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 015833 171 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 248 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 248 (399)
.++|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++++. ++.+++|+.|
T Consensus 2 ~~~G~~~p~~~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~~~ 71 (153)
T 2l5o_A 2 SLDSKTAPAFSLPDLHGK-TVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK---------NFQVLAVAQPI 71 (153)
T ss_dssp --CCTTCCSCEEECTTSC-EEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT---------TEEEEEEECTT
T ss_pred CCCCCCCCCcEeecCCCC-CccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC---------CeEEEEEecCC
Confidence 357899999999 99999 99999999999999999999999999999999999999865 7999999986
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHH
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 328 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~ 328 (399)
.+.+.++++++.++ +.+++..|....+++.|++.++|+++|+|++|+++.+..+ . ...+.|.+.|
T Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g-------~-------~~~~~l~~~l 136 (153)
T 2l5o_A 72 DPIESVRQYVKDYG-LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVG-------E-------PDFGKLYQEI 136 (153)
T ss_dssp SCHHHHHHHHHHTT-CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEES-------S-------CCHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcC-------C-------CCHHHHHHHH
Confidence 35678889988876 5678877888899999999999999999999999876422 1 1135666677
Q ss_pred HHHhccCCC
Q 015833 329 EEEAKNLPR 337 (399)
Q Consensus 329 ~~~~~~~~~ 337 (399)
++++.....
T Consensus 137 ~~ll~~~~~ 145 (153)
T 2l5o_A 137 DTAWRNSDA 145 (153)
T ss_dssp HHHHHCCSS
T ss_pred HHHHHhhhh
Confidence 766654433
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=176.99 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=107.4
Q ss_pred hhhcCCCCccc-CC--CC--Cceeecccc-CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 015833 172 LLTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244 (399)
Q Consensus 172 ~~g~~~p~f~l-~~--~g--~~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~ 244 (399)
.+|..+|+|++ +. +| + .++++++ +||+|||+|| ++||++|..++|.|.+++++|+++ +++||+
T Consensus 26 ~~G~~aP~F~l~~~~~~G~~~-~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~---------~v~vv~ 95 (221)
T 2c0d_A 26 LVTKKAYNFTAQGLNKNNEII-NVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK---------NVELLG 95 (221)
T ss_dssp CTTSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred CCCCCCCCeEEeccccCCCcc-EEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEE
Confidence 47999999999 77 89 8 9999999 9999999999 999999999999999999999866 799999
Q ss_pred EecCCCHHHHHHHHhcCC------CcccccCCchhHHHHHhCCC-----CccceEEEECCCCcEEeccc
Q 015833 245 VSTDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~~------~~~~p~~~d~~~~~~~~~~v-----~~~P~~~lid~~G~i~~~~~ 302 (399)
|++| +.+..+++.+... .+.+|+..|....+++.|++ ..+|++||||++|+|+.+..
T Consensus 96 Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~ 163 (221)
T 2c0d_A 96 ISVD-SVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTV 163 (221)
T ss_dssp EESS-CHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEE
T ss_pred EeCC-CHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEe
Confidence 9998 5567778887661 46889988988999999999 47999999999999998853
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=163.58 Aligned_cols=121 Identities=16% Similarity=0.303 Sum_probs=106.8
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 86 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~ 86 (399)
..|..+|+|+++|.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++|...+.++++.
T Consensus 10 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~i~~d~~~~~~~~~~ 87 (152)
T 2lrt_A 10 IKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTSA 87 (152)
T ss_dssp SCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECSCCHHHHHHHH
T ss_pred ccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999876 9999999999998899998
Q ss_pred hcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 87 ACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 87 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+++|..+...+. ....+.+.|++.++|+++|||+ +|+++...
T Consensus 88 ~~~~~~~~~d~~~-~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 130 (152)
T 2lrt_A 88 DNLPWVCVRDANG-AYSSYISLYNVTNLPSVFLVNR---NNELSARG 130 (152)
T ss_dssp TTCSSEEEECSSG-GGCHHHHHHTCCSCSEEEEEET---TTEEEEET
T ss_pred hCCCceEEECCCC-cchHHHHHcCcccCceEEEECC---CCeEEEec
Confidence 8888765543222 1135889999999999999999 99998763
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-21 Score=162.13 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=106.5
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHh
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 85 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~ 85 (399)
..+|..+|+|+++|.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++|.+.+.+.++
T Consensus 3 l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~ 80 (152)
T 2lrn_A 3 LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKA 80 (152)
T ss_dssp SCTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT--EEEEEEECCSCHHHHHHH
T ss_pred ccCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHH
Confidence 457999999999999999999999999999999999999999999999999999998765 999999999999999999
Q ss_pred HhcCC--CcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 86 RACMP--WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 86 ~~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++.+ |..+.. .......+.+.|++.++|+++++|+ +|+++...
T Consensus 81 ~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 126 (152)
T 2lrn_A 81 IEEDKSYWNQVLL-QKDDVKDVLESYCIVGFPHIILVDP---EGKIVAKE 126 (152)
T ss_dssp HHHHTCCSEEEEE-CHHHHHHHHHHTTCCSSCEEEEECT---TSEEEEEC
T ss_pred HHHhCCCCeEEec-ccchhHHHHHHhCCCcCCeEEEECC---CCeEEEee
Confidence 88654 443322 1112478999999999999999999 99998764
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=170.35 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=116.4
Q ss_pred hhcCCCCccc-CC--CC--Cceeecccc-CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 173 LTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 173 ~g~~~p~f~l-~~--~g--~~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
+|..+|+|++ +. +| + .++++++ +||+++|+|| ++||++|..++|.|.+++++|+++ +++|++|
T Consensus 2 ~G~~aP~f~l~~~~~~G~~~-~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~I 71 (192)
T 2h01_A 2 FQGQAPSFKAEAVFGDNTFG-EVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER---------NVELLGC 71 (192)
T ss_dssp CSSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT---------TEEEEEE
T ss_pred CCCcCCCcEeEeeecCCcee-EEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 5889999999 77 89 8 9999999 9999999999 999999999999999999999865 7999999
Q ss_pred ecCCCHHHHHHHHhcCC------CcccccCCchhHHHHHhCCCC-----ccceEEEECCCCcEEecccchhhhhhcccCC
Q 015833 246 STDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 314 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~~------~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 314 (399)
++| +.+..+++.+.+. .+++|+..|....+++.|++. .+|+++|||++|+|+.+..+.. .
T Consensus 72 s~d-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~-------~- 142 (192)
T 2h01_A 72 SVD-SKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNL-------A- 142 (192)
T ss_dssp ESS-CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGG-------S-
T ss_pred EeC-CHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCC-------C-
Confidence 998 5677888887762 578899889889999999999 8999999999999998853322 1
Q ss_pred CCChHHHHHHHHHHHHHh
Q 015833 315 PFTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 315 p~~~~~~~~l~~~~~~~~ 332 (399)
.....+++.+.|+++.
T Consensus 143 --~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 143 --LGRSVDEILRLIDALQ 158 (192)
T ss_dssp --SGGGHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHh
Confidence 1234456666665543
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=161.46 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=97.8
Q ss_pred CCCCcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 015833 176 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255 (399)
Q Consensus 176 ~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 255 (399)
++|+|.+..+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|++. ++.+++|++| +.+.++
T Consensus 4 pa~~~~~~~~G~-~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~v~vv~v~~d-~~~~~~ 72 (151)
T 3raz_A 4 SADELAGWKDNT-PQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG---------SVDMVGIALD-TSDNIG 72 (151)
T ss_dssp ---CEEETTTCC-EECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---------TEEEEEEESS-CHHHHH
T ss_pred CcchhhcccCCC-EecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECC-ChHHHH
Confidence 455555568999 99999999999999999999999999999999999998654 7999999998 567889
Q ss_pred HHHhcCCCcccccCCc---hhHHHHHhCC--CCccceEEEECCCCcEEeccc
Q 015833 256 SYFGTMPWLALPFGDP---TIKELTKYFD--VQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 256 ~~~~~~~~~~~p~~~d---~~~~~~~~~~--v~~~P~~~lid~~G~i~~~~~ 302 (399)
+++++++ +.+|+..+ ....+++.|+ +.++|+++|||++|+++.+..
T Consensus 73 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 123 (151)
T 3raz_A 73 NFLKQTP-VSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTIT 123 (151)
T ss_dssp HHHHHSC-CSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECC
T ss_pred HHHHHcC-CCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEEC
Confidence 9998876 56666543 4678999999 999999999999999998753
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-21 Score=166.16 Aligned_cols=119 Identities=12% Similarity=0.109 Sum_probs=107.2
Q ss_pred hhcCCCCccc-CC--CCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCE------EEE
Q 015833 173 LTNHDRGYLL-GH--PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF------EVV 243 (399)
Q Consensus 173 ~g~~~p~f~l-~~--~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~vv 243 (399)
.|.++|+|.+ +. +|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ ++ .|+
T Consensus 33 ~g~~~p~f~l~~~~~~g~-~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~~~~~v~~v 102 (183)
T 3lwa_A 33 DRQQLPDIGGDSLMEEGT-QINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA---------GNGDTPGGTVL 102 (183)
T ss_dssp GCCCCCCCEEEBSSSTTC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC---------C---CCSEEEE
T ss_pred cCCCCCceeccccccCCc-EecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc---------CCCccCCcEEE
Confidence 5788999999 88 999 99999999999999999999999999999999999999875 56 999
Q ss_pred EEecCC-CHHHHHHHHhcCCCcccccCCchhHHHHHhC---CCCccceEEEECCCCcEEeccc
Q 015833 244 FVSTDR-DQTSFESYFGTMPWLALPFGDPTIKELTKYF---DVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 244 ~is~d~-~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~---~v~~~P~~~lid~~G~i~~~~~ 302 (399)
+|++|. +.+.+++++++++ +.+|+..|....+.+.| ++.++|+++|||++|+++.+..
T Consensus 103 ~v~~d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 164 (183)
T 3lwa_A 103 GINVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFL 164 (183)
T ss_dssp EEECSCCCHHHHHHHHHHTT-CCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHcC-CCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEc
Confidence 999998 7899999999887 57888888888888887 4899999999999999998743
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=160.56 Aligned_cols=126 Identities=19% Similarity=0.240 Sum_probs=107.4
Q ss_pred ccccccccccCCeEEecCCCCEEecc--ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHH-hcCCCcEEEEEEecCCCh
Q 015833 3 LSQWYVQQLRRRMTSTKEIGEEVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEEL-RNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 3 ~~~~~~~~~~p~f~l~d~~G~~v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~~~~~~~ii~Vs~D~~~ 79 (399)
.....+|..+|+|++++.+|+.++++ +++||+++|+||++||++|+.++|.|.++++++ ++.+ +.++.|++|.+.
T Consensus 2 ~~~~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~ 79 (148)
T 3fkf_A 2 NAKVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDR 79 (148)
T ss_dssp ---CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT--EEEEEEECCSCH
T ss_pred CccccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC--eEEEEEECCCCH
Confidence 34567899999999999999999999 999999999999999999999999999999999 6655 999999999999
Q ss_pred HHHHHhHhcCCCcccccCChH-HHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWLAVPYSDLE-TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~~-~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+.++.+++++....+.+.. ....+.+.|++.++|+++++|+ +|+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 131 (148)
T 3fkf_A 80 EAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSP---TGKILARD 131 (148)
T ss_dssp HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECT---TSBEEEES
T ss_pred HHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECC---CCeEEEec
Confidence 999999997664222222321 1378999999999999999999 99998764
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=170.14 Aligned_cols=134 Identities=18% Similarity=0.120 Sum_probs=113.6
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 253 (399)
++|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|.+++++|+++ +++|++|++| +.+.
T Consensus 30 ~aP~f~l~~~~G~-~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~---------~~~vv~Vs~D-~~~~ 98 (179)
T 3ixr_A 30 SLLNHPLMLSGST-CKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI---------NATVLGVSRD-SVKS 98 (179)
T ss_dssp HHHHCCEEEGGGE-EECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESC-CHHH
T ss_pred cCCCeeEECCCCC-EEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CHHH
Confidence 3999999 99999 99999999999999999 899999999999999999999876 8999999998 5677
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhCCCCc------------cceEEEECCCCcEEecccchhhhhhcccCCCCChHHH
Q 015833 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQG------------IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKL 321 (399)
Q Consensus 254 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~ 321 (399)
.++++++++ +.||+..|.+..+++.|++.. .|++||||++|+|+..... ......+
T Consensus 99 ~~~~~~~~~-~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~-----------~~~~~~~ 166 (179)
T 3ixr_A 99 HDSFCAKQG-FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQ-----------VKVPGHA 166 (179)
T ss_dssp HHHHHHHHT-CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECS-----------CCSTTHH
T ss_pred HHHHHHHcC-CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcC-----------CCCCCCH
Confidence 888888766 678998898899999999964 6889999999999987421 1234456
Q ss_pred HHHHHHHHHHh
Q 015833 322 EFLEKQMEEEA 332 (399)
Q Consensus 322 ~~l~~~~~~~~ 332 (399)
+++.+.|+++.
T Consensus 167 ~~il~~l~~l~ 177 (179)
T 3ixr_A 167 EEVLNKLKAHA 177 (179)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 67777776543
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-21 Score=165.19 Aligned_cols=116 Identities=16% Similarity=0.283 Sum_probs=107.6
Q ss_pred HhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 015833 171 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 248 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 248 (399)
..+|..+|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++++ ++.|++|++|
T Consensus 11 ~~~g~~~p~~~l~~~~g~-~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-----------~v~vv~i~~d~ 78 (165)
T 3ha9_A 11 EEVLEREASFSLTTIDGE-VISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----------EISVIAIDFWT 78 (165)
T ss_dssp HHHHHHHHCCCEEBTTSC-EECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----------TEEEEEEECCS
T ss_pred ccccCcCCCCEeecCCCC-EeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-----------CcEEEEEEecc
Confidence 457888999999 99999 999999999999999999999999999999999999875 4899999999
Q ss_pred -----------------CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEe
Q 015833 249 -----------------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 249 -----------------~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~ 299 (399)
.+.+.++++++++++.++|+..| ...+++.|++.++|+++|||++|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 79 AEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp HHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred cccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 78899999999888558888888 889999999999999999999999998
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-21 Score=172.00 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=105.8
Q ss_pred hhhcCCCCccc-CC---CCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL-GH---PPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~~---~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|..+|+|++ +. +|+ .+++++++||++||+|| ++||++|..++|.|.+++++|+++ +++||+|+
T Consensus 20 ~~G~~aP~f~l~~~~~~~g~-~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~---------~v~vv~Is 89 (211)
T 2pn8_A 20 FQSMPAPYWEGTAVIDGEFK-ELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI---------NTEVVACS 89 (211)
T ss_dssp CSSCBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred CCCCcCCCeEeecccCCCCc-EEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 47899999998 53 457 99999999999999999 999999999999999999999865 89999999
Q ss_pred cCCCHHHHHHHHhcC----C--CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 247 TDRDQTSFESYFGTM----P--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~----~--~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
+| +.+..+++.+.. + .+.+|+..|....+++.|++. .+|++||||++|+|+.+..
T Consensus 90 ~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~ 156 (211)
T 2pn8_A 90 VD-SQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 156 (211)
T ss_dssp SS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred CC-CHHHHHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEe
Confidence 98 566778888766 1 478899889889999999994 6999999999999998853
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-21 Score=203.89 Aligned_cols=235 Identities=13% Similarity=0.117 Sum_probs=149.2
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+.++.|++++|.|||+||++|+.++|.|.+++++++++ +.++.|+.|.. ..++
T Consensus 450 ~~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~---v~~~~vd~~~~------------------------~~~~ 502 (780)
T 3apo_A 450 FPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCTIH------------------------EGLC 502 (780)
T ss_dssp SCTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHH
T ss_pred HHHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEeCCCC------------------------HHHH
Confidence 33458999999999999999999999999999999743 88888876533 6688
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCCCC
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP 186 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g 186 (399)
+.|+|.++|++++++ +|++.... |. .+.+.+....... ++ |... ..++
T Consensus 503 ~~~~v~~~Pt~~~~~----~g~~~~~~--------g~----~~~~~l~~fi~~~------------~~---~~v~-~l~~ 550 (780)
T 3apo_A 503 NMYNIQAYPTTVVFN----QSSIHEYE--------GH----HSAEQILEFIEDL------------RN---PSVV-SLTP 550 (780)
T ss_dssp HHTTCCSSSEEEEEE----TTEEEEEC--------SC----SCHHHHHHHHHHH------------HS---CSEE-ECCH
T ss_pred HHcCCCcCCeEEEEc----CCceeeec--------Cc----ccHHHHHHHHHhh------------cc---ccee-ecCc
Confidence 999999999999995 66552211 11 1222232222111 11 1111 1111
Q ss_pred Cceee---ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 015833 187 DEKVP---VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 263 (399)
Q Consensus 187 ~~~~~---l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 263 (399)
+ .+. ...-.++.++|.||+|||++|+.+.|.+.++++.++++ +.++.|.++..
T Consensus 551 ~-~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~----------v~~~~vd~~~~------------- 606 (780)
T 3apo_A 551 S-TFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL----------INVGSVDCGQY------------- 606 (780)
T ss_dssp H-HHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEETTTT-------------
T ss_pred c-cHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC----------eEEEEEECcch-------------
Confidence 1 111 11112467899999999999999999999999999754 56666655533
Q ss_pred cccccCCchhHHHHHhCCCCccceEEEECCCCc----EEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCCc-
Q 015833 264 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK----TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS- 338 (399)
Q Consensus 264 ~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~----i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~- 338 (399)
..+++.|+|.++|+++++.++++ .+...| .....+.|.+.+.+........
T Consensus 607 ----------~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g--------------~~~~~~~l~~fi~~~~~~~v~~l 662 (780)
T 3apo_A 607 ----------HSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNG--------------WNRDAYSLRSWGLGFLPQASIDL 662 (780)
T ss_dssp ----------HHHHHHTTCCSSSEEEEECCCSSSCCSCEECCC--------------SCCSHHHHHHHHHTTSCCCSEEE
T ss_pred ----------HHHHHHcCCCCCCeEEEEcCCCcCccchhhcCC--------------CCCCHHHHHHHHhhhcccccccC
Confidence 67889999999999999965433 222221 0122355666665543211110
Q ss_pred ---cc--ccccccceeeeecCCCCCCeecCCCCCCCCce
Q 015833 339 ---EF--HIGHRHELNLVSEGTGGGPFICCDCDEQGSGW 372 (399)
Q Consensus 339 ---~~--~~~~~~~~~~~~~~~~~~~~~c~~C~~~~~~w 372 (399)
.. .......... ..+.++||++|+++.|.|
T Consensus 663 ~~~~~~~~~~~~~~~v~----v~F~a~wC~~C~~~~p~~ 697 (780)
T 3apo_A 663 TPQTFNEKVLQGKTHWV----VDFYAPWSGPSQNFAPEF 697 (780)
T ss_dssp CHHHHHHHTTTCSSCEE----EEEECTTCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCeEE----EEEECCCCHHHHHHHHHH
Confidence 01 0111122222 445689999999877665
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=169.23 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=108.2
Q ss_pred hhhcCCCCccc-CC--CC--Cceeecccc-CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 015833 172 LLTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244 (399)
Q Consensus 172 ~~g~~~p~f~l-~~--~g--~~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~ 244 (399)
.+|..+|+|++ +. +| + .++++++ +||++||+|| ++||++|+.++|.|.+++++|+++ +++||+
T Consensus 22 ~~G~~aP~f~l~~~~~~G~~~-~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~ 91 (213)
T 2i81_A 22 YVGKEAPFFKAEAVFGDNSFG-EVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER---------NVELLG 91 (213)
T ss_dssp CBTSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred cCCCcCCCeEeeccccCCcee-EEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEE
Confidence 47999999999 77 89 8 9999999 9999999999 999999999999999999999866 799999
Q ss_pred EecCCCHHHHHHHHhcCC------CcccccCCchhHHHHHhCCCC-----ccceEEEECCCCcEEecc
Q 015833 245 VSTDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~~------~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~ 301 (399)
|++| +.+..+++.+... .+++|+..|....+++.|++. .+|++||||++|+|+.+.
T Consensus 92 Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 92 CSVD-SKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp EESS-CHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred EeCC-CHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEE
Confidence 9999 5677888887662 478899999889999999999 999999999999999885
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=165.47 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=104.0
Q ss_pred HhhhcCCCCccc-CCCC--CceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 171 NLLTNHDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g--~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
..+|..+|+|++ +.+| + .+++++++||+++|+||++||++|+.++|.|.+++++ ++.|++|++
T Consensus 30 ~~~G~~~P~f~l~~~~g~~~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------------~v~vv~vs~ 95 (176)
T 3kh7_A 30 ALIGKPFPAFDLPSVQDPAR-RLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-------------GVVIYGINY 95 (176)
T ss_dssp TTTTSBCCCCEEEBSSCTTS-EEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------------TCEEEEEEE
T ss_pred cccCCcCCCcEecccCCCCc-eecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-------------CCEEEEEeC
Confidence 357999999999 8888 7 8999999999999999999999999999999988764 389999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
|.+.+.++++++++++....+..|....+++.|++.++|+++|||++|+++.+.
T Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 149 (176)
T 3kh7_A 96 KDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKI 149 (176)
T ss_dssp SCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEE
T ss_pred CCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEE
Confidence 989999999999887433334667888999999999999999999999999874
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-21 Score=169.49 Aligned_cols=140 Identities=12% Similarity=0.157 Sum_probs=115.9
Q ss_pred hhcCCCCccc-CCC-------------C--CceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCC
Q 015833 173 LTNHDRGYLL-GHP-------------P--DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 235 (399)
Q Consensus 173 ~g~~~p~f~l-~~~-------------g--~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~ 235 (399)
+|..+|+|++ +.+ | + .+++++++||+++|+|| ++||++|+.++|.|.+++++|+++
T Consensus 6 ~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~-~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~------ 78 (195)
T 2bmx_A 6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFT-TITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR------ 78 (195)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEE-EEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT------
T ss_pred CCCcCCCcCcccccccccccccccccCCCcc-EeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC------
Confidence 6889999999 766 6 7 99999999999999999 999999999999999999999865
Q ss_pred CCCCEEEEEEecCCCHHHHHHHHhcCC---CcccccCCchhHHHHHhCCCC-----ccceEEEECCCCcEEecccchhhh
Q 015833 236 ALEDFEVVFVSTDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLIN 307 (399)
Q Consensus 236 ~~~~~~vv~is~d~~~~~~~~~~~~~~---~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~ 307 (399)
+++|++|++|. .+..+++.+.+. .+.+|+..|....+++.|++. ++|+++|||++|+|+.+..+..
T Consensus 79 ---~v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~-- 152 (195)
T 2bmx_A 79 ---DAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAG-- 152 (195)
T ss_dssp ---TEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECT--
T ss_pred ---CCEEEEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCC--
Confidence 79999999984 677888887762 367888888889999999999 9999999999999998853321
Q ss_pred hhcccCCCCChHHHHHHHHHHHHHhc
Q 015833 308 LYQENAYPFTEAKLEFLEKQMEEEAK 333 (399)
Q Consensus 308 ~~g~~~~p~~~~~~~~l~~~~~~~~~ 333 (399)
. .....++|.+.|+++..
T Consensus 153 -----~---~~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 153 -----S---VGRNVDEVLRVLDALQS 170 (195)
T ss_dssp -----T---CCCCHHHHHHHHHHHHC
T ss_pred -----C---CCCCHHHHHHHHHHHhh
Confidence 1 11134666666666554
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-21 Score=163.97 Aligned_cols=137 Identities=11% Similarity=0.143 Sum_probs=116.0
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCc-EEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|..+|+|++ +.+|+ .+++++++|| +++|+|| ++||++|+.++|.|.+++++|++. +++|++|++|
T Consensus 10 ~~G~~~p~f~l~~~~G~-~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d 79 (160)
T 1xvw_A 10 NVGATAPDFTLRDQNQQ-LVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND---------DSAALAISVG 79 (160)
T ss_dssp CTTSBCCCCEEECTTSC-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS---------SEEEEEEESC
T ss_pred CCCCCCCCeEeEcCCCC-EEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CcEEEEEeCC
Confidence 47899999999 99999 9999999998 9999998 999999999999999999988754 7999999998
Q ss_pred CCHHHHHHHHhcCCCcccccCCch--hHHHHHhCCCC----ccc--eEEEECCCCcEEecccchhhhhhcccCCCCChHH
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPT--IKELTKYFDVQ----GIP--CLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 320 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~--~~~~~~~~~v~----~~P--~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~ 320 (399)
+.+.++++.+++++ .+|+..|. ...+++.|++. ++| +++|||++|+|+.+..+.. ..+..
T Consensus 80 -~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~----------~~~~~ 147 (160)
T 1xvw_A 80 -PPPTHKIWATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQP----------GEVRD 147 (160)
T ss_dssp -CHHHHHHHHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCT----------TCCCC
T ss_pred -CHHHHHHHHHhcCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCC----------CCCCC
Confidence 57788999988774 78888885 88999999998 999 9999999999998854321 12334
Q ss_pred HHHHHHHHHH
Q 015833 321 LEFLEKQMEE 330 (399)
Q Consensus 321 ~~~l~~~~~~ 330 (399)
++++.+.+++
T Consensus 148 ~~~l~~~l~~ 157 (160)
T 1xvw_A 148 QRLWTDALAA 157 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666654
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=167.80 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=107.2
Q ss_pred hhhcCCCCccc-CC--CC--CceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 172 LLTNHDRGYLL-GH--PP--DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 172 ~~g~~~p~f~l-~~--~g--~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
.+|..+|+|++ +. +| + .+++++++||++||+|| ++||++|..++|.|.+++++|++. +++|++|
T Consensus 7 ~~G~~aP~f~l~~~~~~g~~~-~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~---------~v~vi~I 76 (202)
T 1uul_A 7 EDLHPAPDFNETALMPNGTFK-KVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI---------GCEVLAC 76 (202)
T ss_dssp CTTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred cCCCcCCCcEeeeeecCCCcc-EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 46899999999 65 78 7 99999999999999999 999999999999999999999865 7999999
Q ss_pred ecCCCHHHHHHHHhcC----C--CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 246 STDRDQTSFESYFGTM----P--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~----~--~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
++| +.+..+++.+.+ + .+++|+..|....+++.|++. ++|++||||++|+|+.+..
T Consensus 77 s~D-~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~ 144 (202)
T 1uul_A 77 SMD-SEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITV 144 (202)
T ss_dssp ESS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred eCC-CHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEe
Confidence 998 556778888765 1 478899889889999999999 9999999999999998853
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=154.58 Aligned_cols=116 Identities=24% Similarity=0.401 Sum_probs=104.7
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe-----cCC
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS-----TDR 249 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is-----~d~ 249 (399)
++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++.+ ++.+++|. .+.
T Consensus 1 ~~p~f~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~v~i~~~~~~~~~ 69 (138)
T 4evm_A 1 EVADFELMGVDGK-TYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD----------DYVVLTVVSPGHKGEQ 69 (138)
T ss_dssp CCCCCEEEBTTSC-EEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT----------TEEEEEEECTTSTTCC
T ss_pred CCCcceeECCCCC-EEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC----------CcEEEEEEcCCCCchh
Confidence 4799999 99999 9999999999999999999999999999999999988542 68999994 455
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
+.+.++++++.+++..+|+..|....+++.|++.++|+++|+|++|+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 122 (138)
T 4evm_A 70 SEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHP 122 (138)
T ss_dssp CHHHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEE
T ss_pred hHHHHHHHHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEeec
Confidence 78899999999987789998898899999999999999999999999998743
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=158.42 Aligned_cols=119 Identities=20% Similarity=0.392 Sum_probs=107.1
Q ss_pred HhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 171 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
..+|..+|+|.+ +.+|+ .+++++ +||+++|+||++||++|+.++|.|.++++++++. ++.+++|++|.
T Consensus 9 ~~~g~~~p~~~l~~~~g~-~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~ 77 (145)
T 3erw_A 9 EKQPAVPAVFLMKTIEGE-DISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD---------SVKLVTVNLVN 77 (145)
T ss_dssp ---CCSCCEEEEECTTSC-EEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS---------SEEEEEEECGG
T ss_pred ccCCCcCCCceeecCCCC-EEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC---------CEEEEEEEccC
Confidence 357899999999 99999 999999 9999999999999999999999999999998744 79999999985
Q ss_pred ---CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 250 ---DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+.+.++++.+.++ +.+|+..|....+++.|++.++|+++|+|++|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (145)
T 3erw_A 78 SEQNQQVVEDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTK 131 (145)
T ss_dssp GSSCHHHHHHHHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEE
T ss_pred CcCCHHHHHHHHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEE
Confidence 7889999998876 67888888889999999999999999999999998874
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=164.89 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=107.7
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC-
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD- 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~- 250 (399)
.|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|++. ++.|++|++|.+
T Consensus 36 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~~ 105 (186)
T 1jfu_A 36 APLKLPDLAFEDADGK-PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP---------NFEVVAINIDTRD 105 (186)
T ss_dssp SCCBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT---------TEEEEEEECCCSC
T ss_pred CCCcCCCcEeEcCCCC-EeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCC
Confidence 5888999999 99999 99999999999999999999999999999999999999754 799999999964
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCC----ccceEEEECCCCcEEecc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ----GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~----~~P~~~lid~~G~i~~~~ 301 (399)
.+.+++++++++...+|+..|....+.+.|++. ++|+++|||++|+++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~ 160 (186)
T 1jfu_A 106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI 160 (186)
T ss_dssp TTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEE
Confidence 577888998888657888888888999999985 999999999999999874
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-20 Score=165.60 Aligned_cols=177 Identities=14% Similarity=0.169 Sum_probs=116.2
Q ss_pred ccCCCEEEEEE----ecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHH
Q 015833 29 DLEGKVTALYF----SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 104 (399)
Q Consensus 29 ~~~gk~vlv~F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 104 (399)
.+++.+++++| |++||++|+.++|.+.++++++.+.+ .+.++.|+.|.. .+
T Consensus 18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~------------------------~~ 72 (229)
T 2ywm_A 18 EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYSPFTH------------------------KE 72 (229)
T ss_dssp HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTT-TEEEEEECTTTC------------------------HH
T ss_pred hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCC-ceEEEEecCccc------------------------HH
Confidence 34555666666 58999999999999999999986432 588888855433 88
Q ss_pred HHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCC
Q 015833 105 LNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH 184 (399)
Q Consensus 105 l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~ 184 (399)
++++|+|+++|++++++. ........+ . +...+....+..... .+.....+
T Consensus 73 l~~~~~v~~~Ptl~~~~~---~~~~~~~~G--------~---~~~~~l~~~~~~~~~-----------~~~~~~~l---- 123 (229)
T 2ywm_A 73 ETEKYGVDRVPTIVIEGD---KDYGIRYIG--------L---PAGLEFTTLINGIFH-----------VSQRKPQL---- 123 (229)
T ss_dssp HHHHTTCCBSSEEEEESS---SCCCEEEES--------C---CCTTHHHHHHHHHHH-----------HHTTCCSC----
T ss_pred HHHHcCCCcCcEEEEECC---CcccceecC--------C---ccHHHHHHHHHHHHh-----------ccCCccCC----
Confidence 999999999999999963 222221111 1 111111111111110 00111111
Q ss_pred CCCceee-ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 015833 185 PPDEKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 263 (399)
Q Consensus 185 ~g~~~~~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 263 (399)
+.. .+. +....+++++++||++||++|+.+.|.++++++++. ++.++.|+++..
T Consensus 124 ~~~-~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~-----------~v~~~~vd~~~~------------- 178 (229)
T 2ywm_A 124 SEK-TLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND-----------YITSKVIDASEN------------- 178 (229)
T ss_dssp CHH-HHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----------TEEEEEEEGGGC-------------
T ss_pred CHH-HHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC-----------CeEEEEEECCCC-------------
Confidence 111 111 112234566899999999999999999999988762 478888887744
Q ss_pred cccccCCchhHHHHHhCCCCccceEEEECCCCcE
Q 015833 264 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 264 ~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
.++++.|+|.++|++++ +|++
T Consensus 179 ----------~~l~~~~~v~~~Pt~~~---~G~~ 199 (229)
T 2ywm_A 179 ----------QDLAEQFQVVGVPKIVI---NKGV 199 (229)
T ss_dssp ----------HHHHHHTTCCSSSEEEE---GGGT
T ss_pred ----------HHHHHHcCCcccCEEEE---CCEE
Confidence 67899999999999988 6774
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=155.17 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=104.4
Q ss_pred hcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 015833 174 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 252 (399)
Q Consensus 174 g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 252 (399)
|.++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++. ++.+++|++|.+.+
T Consensus 2 ~~~~p~~~~~~~~g~-~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~~~ 69 (136)
T 1zzo_A 2 VPAQLQFSAKTLDGH-DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----------EVTFVGVAGLDQVP 69 (136)
T ss_dssp CCGGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHH
T ss_pred CCCCCCcccccCCCC-EeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-----------CeEEEEEeCCCCHH
Confidence 456899999 99999 999999999999999999999999999999999998875 48999999998899
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 253 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 253 ~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
.++++++.++...+|+..|....+++.|++.++|+++++|++|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 70 AMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp HHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred HHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE
Confidence 9999999888558888888889999999999999999999999998
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-21 Score=161.77 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=107.6
Q ss_pred cccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 4 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
....+|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +.++.|+.|.+.+.+.
T Consensus 3 ~~~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~ 80 (148)
T 3hcz_A 3 APLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWL 80 (148)
T ss_dssp CCCCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT--EEEEEEECCSSSHHHH
T ss_pred CccCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--EEEEEEEecCCHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999998875 9999999998888999
Q ss_pred HhHhcCCCc-ccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWL-AVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~-~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.+++++. .....|......+.+.|++.++|+++++|+ +|+++...
T Consensus 81 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~~ 128 (148)
T 3hcz_A 81 KFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDK---NKVIIAKR 128 (148)
T ss_dssp HHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECT---TCBEEEES
T ss_pred HHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECC---CCcEEEec
Confidence 999977643 111224332233889999999999999999 99998763
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-21 Score=168.49 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=99.8
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 248 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 248 (399)
.+.++|+|++ +.+|+ .+++++++||+|||+||++||++|+.++|.|.+++++|+++ +++||+|++|
T Consensus 22 ~~~~~p~f~l~d~~G~-~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~~~vi~is~d~~~ 91 (187)
T 3dwv_A 22 AASSIFDFEVLDADHK-PYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ---------GFTVLAFPSNQFG 91 (187)
T ss_dssp TCCSGGGSCCBBTTSC-BCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG---------TCEEEEEEBCCCS
T ss_pred CCCccCCeEEEcCCCC-EeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC---------CeEEEEEECcccC
Confidence 4677899999 99999 99999999999999999999999999999999999999876 7999999998
Q ss_pred ----CCHHHHHHHHhcCCCcccccCC--chhHH----HH--------HhCCCCccc---eEEEECCCCcEEeccc
Q 015833 249 ----RDQTSFESYFGTMPWLALPFGD--PTIKE----LT--------KYFDVQGIP---CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 ----~~~~~~~~~~~~~~~~~~p~~~--d~~~~----~~--------~~~~v~~~P---~~~lid~~G~i~~~~~ 302 (399)
.+.+++++++++.-.+.+|+.. |.... +. ..|++..+| ++||||++|+|+.+..
T Consensus 92 ~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~ 166 (187)
T 3dwv_A 92 GQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFS 166 (187)
T ss_dssp SCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEEC
T ss_pred CCCCCCHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEEC
Confidence 3578899998855336777764 22211 11 445777888 9999999999998854
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=165.97 Aligned_cols=164 Identities=12% Similarity=0.125 Sum_probs=125.5
Q ss_pred hhhcCCCCccc--CCCCCceeeccccCCc-EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL--GHPPDEKVPVSSLVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l--~~~g~~~~~l~~~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|..+|+|++ +.+|+ .+++++++|| ++||+||++||++|+.++|.|.+++++|+++ ++.+++|++|
T Consensus 19 ~~g~~~p~f~l~~~~~G~-~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~v~~d 88 (196)
T 2ywi_A 19 PLGKQAPPFALTNVIDGN-VVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK---------GVSFVAINSN 88 (196)
T ss_dssp CTTCBCCCCEEEETTTCC-EEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG---------TCEEEEEECS
T ss_pred CcCCcCCceeeeecCCCC-EEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC---------CcEEEEEECC
Confidence 36888999998 68999 9999999998 5999999999999999999999999999876 7999999997
Q ss_pred -------CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhh--hhcccCCCCChH
Q 015833 249 -------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLIN--LYQENAYPFTEA 319 (399)
Q Consensus 249 -------~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~--~~g~~~~p~~~~ 319 (399)
.+.+.+++++++++ +.+|+..|....+++.|++.++|+++|||++|+++.+....... ..| +.+.
T Consensus 89 ~~~~~~~d~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g----~~~~- 162 (196)
T 2ywi_A 89 DAEQYPEDSPENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGI----PVTG- 162 (196)
T ss_dssp CTTTCGGGSHHHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCC----CCCC-
T ss_pred ccccccccCHHHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccC----ccCH-
Confidence 46788899998877 57888888888999999999999999999999999874321100 011 1122
Q ss_pred HHHHHHHHHHHHhccCCCcccccccccceeeeecCC
Q 015833 320 KLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGT 355 (399)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (399)
++|.+.|++++++.+... ...+...|++.|..
T Consensus 163 --~~l~~~i~~ll~~~~~~~--~~~~~~gC~~~~~~ 194 (196)
T 2ywi_A 163 --ESIRAALDALLEGRPVPE--KQKPSIGCSIKWKP 194 (196)
T ss_dssp --HHHHHHHHHHHHTCCCCS--CCCCCEEEECCCCC
T ss_pred --HHHHHHHHHHHcCCCCCC--CCCCCCceeeeecc
Confidence 556666666665433321 22234446666643
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=164.69 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=106.7
Q ss_pred hhcCCCCccc-CCCCC---ceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 173 LTNHDRGYLL-GHPPD---EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~---~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
+|..+|+|++ +.+|+ ..+++++++||++||+|| ++||++|+.++|.|.+++++|+++ +++|++|++
T Consensus 3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~vs~ 73 (187)
T 1we0_A 3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL---------GVEVYSVST 73 (187)
T ss_dssp TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT---------TEEEEEEES
T ss_pred CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc---------CCEEEEEEC
Confidence 5889999999 76654 279999999999999999 999999999999999999999875 799999999
Q ss_pred CCCHHHHHHHHhcCC---CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccc
Q 015833 248 DRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 248 d~~~~~~~~~~~~~~---~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 303 (399)
|. .+..+++.+.+. .+++|+..|....+++.|++. ++|+++|||++|+++.+..+
T Consensus 74 d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g 137 (187)
T 1we0_A 74 DT-HFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEIN 137 (187)
T ss_dssp SC-HHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred CC-HHHHHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEec
Confidence 85 667888888772 367888888889999999998 99999999999999988543
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=158.79 Aligned_cols=120 Identities=19% Similarity=0.385 Sum_probs=102.4
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEecCCChh-hhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---C
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---D 250 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~ 250 (399)
.+|+|++ +.+|+ .+++++++||+++|+||++||++ |+.++|.|.++++++++. .+..++++++|++|. +
T Consensus 2 ~ap~f~l~~~~G~-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~-----~~~~~~~vv~vs~d~~~d~ 75 (164)
T 2ggt_A 2 LGGPFSLTTHTGE-RKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSI-----TTLPDLTPLFISIDPERDT 75 (164)
T ss_dssp CCCCCEEEETTSC-EEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHS-----SSSCCEEEEEEESCTTTCC
T ss_pred CCCCeEEEeCCCC-EEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhc-----cCCCcEEEEEEEeCCCCCC
Confidence 4799999 99999 99999999999999999999998 999999999999999751 001379999999986 3
Q ss_pred HHHHHHHHhcCCCcccccC---CchhHHHHHhCCCCccc---------------eEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFG---DPTIKELTKYFDVQGIP---------------CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~---~d~~~~~~~~~~v~~~P---------------~~~lid~~G~i~~~~~ 302 (399)
.+.+++++++++ +.+++. .|....+++.|++..+| +++|||++|+++.+..
T Consensus 76 ~~~~~~~~~~~~-~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 144 (164)
T 2ggt_A 76 KEAIANYVKEFS-PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG 144 (164)
T ss_dssp HHHHHHHHHTTC-SSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHcC-CCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeC
Confidence 678899998776 455554 45667899999999999 8999999999998753
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-21 Score=171.89 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=105.5
Q ss_pred HhhhcCCCCccc-CC-CC--CceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 171 NLLTNHDRGYLL-GH-PP--DEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~-~g--~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
-.+|..+|+|++ +. +| + .+++++++||++||+||+ +||++|..++|.|.+++++|+++ +++||+|
T Consensus 40 l~~G~~aP~f~l~~~~d~~G~-~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~---------~v~vv~I 109 (222)
T 3ztl_A 40 LLPNRPAPEFKGQAVINGEFK-EICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR---------NCQVIAC 109 (222)
T ss_dssp CCSSEECCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred ccCCCCCCCeEEecccCCCCc-EEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 457999999999 55 44 8 999999999999999997 99999999999999999999865 7999999
Q ss_pred ecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 246 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
++|. .++.+++.+.. ..+.+|+..|.+..+++.|++. .+|++||||++|+|+.+..
T Consensus 110 s~D~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~ 177 (222)
T 3ztl_A 110 STDS-QYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITI 177 (222)
T ss_dssp ESSC-HHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEE
T ss_pred ECCC-HHHHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEe
Confidence 9984 45556666544 2588899999889999999998 8999999999999998854
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-21 Score=163.04 Aligned_cols=117 Identities=9% Similarity=0.031 Sum_probs=103.3
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+||+ +||++|..++|.|++++++| . +++|++|++| +
T Consensus 18 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~---------~v~vv~is~d-~ 84 (163)
T 1psq_A 18 VGDKALDFSLTTTDLS-KKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D---------NTVVLTVSMD-L 84 (163)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T---------TEEEEEEESS-C
T ss_pred CCCCCCCEEEEcCCCc-EeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C---------CcEEEEEECC-C
Confidence 6889999999 99999 999999999999999995 89999999999999999888 3 6999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhCCCC----c--cceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQ----G--IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~ 302 (399)
.+..+++.++++.-++|+..| ....+++.|++. + .|+++|||++|+|+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~ 143 (163)
T 1psq_A 85 PFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY 143 (163)
T ss_dssp HHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEE
T ss_pred HHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEe
Confidence 667788888766227888888 788999999997 3 399999999999998854
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=168.97 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=115.5
Q ss_pred hhhcCCCCccc-C---CCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL-G---HPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~---~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|.++|+|++ + .+|+ .+++++++||++||+|| ++||++|+.++|.|.+++++|+++ +++||+|+
T Consensus 28 ~~G~~aP~f~l~~~~~~~g~-~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~---------~v~vv~Is 97 (220)
T 1zye_A 28 AVTQHAPYFKGTAVVSGEFK-EISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV---------NCEVVAVS 97 (220)
T ss_dssp CTTSBCCCCEEEEECSSSEE-EEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT---------TEEEEEEE
T ss_pred cCCCCCCCcEEEeeeCCCCc-EEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 57999999998 3 4678 99999999999999999 999999999999999999999876 79999999
Q ss_pred cCCCHHHHHHHHhcC----C--CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccCC
Q 015833 247 TDRDQTSFESYFGTM----P--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 314 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~----~--~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 314 (399)
+| +.+..+++.+.+ + .+.+|+..|....+++.|++. .+|++||||++|+|+.+..+.+ .
T Consensus 98 ~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~-------~- 168 (220)
T 1zye_A 98 VD-SHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDL-------P- 168 (220)
T ss_dssp SS-CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT-------T-
T ss_pred CC-CHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCC-------C-
Confidence 99 556677777765 1 468899889889999999999 9999999999999998853321 1
Q ss_pred CCChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCC
Q 015833 315 PFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 358 (399)
Q Consensus 315 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
.....+++.+.|+++... ......+++.|..|..
T Consensus 169 --~~~~~~ell~~l~~l~~~--------~~~~~~cp~~W~~g~~ 202 (220)
T 1zye_A 169 --VGRSVEETLRLVKAFQFV--------EAHGEVSPANWTPESP 202 (220)
T ss_dssp --CCCCHHHHHHHHHHHHHT--------TC--------------
T ss_pred --CCCCHHHHHHHHHHhhhh--------cccCCccCCCCCCCCc
Confidence 112245555555554432 1234456667765544
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=156.48 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=106.0
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHh
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 85 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~ 85 (399)
+.+|..+|+|++++ +|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.+++|++|.+.+.+.++
T Consensus 3 l~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~ 79 (152)
T 3gl3_A 3 LDKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKF 79 (152)
T ss_dssp CCTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHHHHHH
T ss_pred CCCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHHHHHH
Confidence 45799999999999 999999999999999999999999999999999999999999876 999999999999999999
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+++++....+.|.. ..+.+.|++.++|+++|||+ +|+++..
T Consensus 80 ~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~ 121 (152)
T 3gl3_A 80 LAQVPAEFTVAFDPK--GQTPRLYGVKGMPTSFLIDR---NGKVLLQ 121 (152)
T ss_dssp HHHSCCCSEEEECTT--CHHHHHTTCCSSSEEEEECT---TSBEEEE
T ss_pred HHHcCCCCceeECCc--chhHHHcCCCCCCeEEEECC---CCCEEEE
Confidence 998775332222433 67899999999999999999 9999865
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=156.86 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=115.2
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec--C
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST--D 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~--d 248 (399)
.+|.++|+|.+ +.+|+ .+++++++ |+++|+||++||++|+.++|.|.++++++ . +.+++|++ +
T Consensus 6 ~~g~~~p~f~l~~~~g~-~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~----------v~~v~v~~d~~ 71 (154)
T 3ia1_A 6 KPGEPLPDFLLLDPKGQ-PVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET--G----------VPFYVISREPR 71 (154)
T ss_dssp CSBEECCCCCEECTTSC-EECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH--C----------CCEEEEECCTT
T ss_pred CCCCcCCceEEECCCCC-EechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc--C----------CeEEEEeCCCc
Confidence 36888999999 99999 99999999 99999999999999999999999999998 3 68999999 5
Q ss_pred CCHHHHHHHHhcCCCcccccCCc---hhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHH
Q 015833 249 RDQTSFESYFGTMPWLALPFGDP---TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE 325 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d---~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 325 (399)
.+.+.+++++++++ +.+|+..| ....+++.|++.++|+++|||++|+++.+..+. .+ .++|.
T Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l~ 136 (154)
T 3ia1_A 72 DTREVVLEYMKTYP-RFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGR-----------AG---REALL 136 (154)
T ss_dssp CCHHHHHHHHTTCT-TEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESB-----------CC---HHHHH
T ss_pred ccHHHHHHHHHHcC-CCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCC-----------CC---HHHHH
Confidence 68889999999888 48888777 789999999999999999999999999874321 12 35666
Q ss_pred HHHHHHhccC
Q 015833 326 KQMEEEAKNL 335 (399)
Q Consensus 326 ~~~~~~~~~~ 335 (399)
+.|++.....
T Consensus 137 ~~l~~~~~~~ 146 (154)
T 3ia1_A 137 DALLLAGADL 146 (154)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHhccCcc
Confidence 7776655433
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=156.77 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=106.1
Q ss_pred hhcCCCCccc---CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL---GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l---~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|.++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++.++ +.+++|++|.
T Consensus 3 ~g~~~P~f~~~~~~~~g~-~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~----------~~~~~v~~~~ 71 (148)
T 2b5x_A 3 LRQPMPELTGEKAWLNGE-VTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ----------LNVVAVHMPR 71 (148)
T ss_dssp TTCBCCCCCCCSEEESCC-CCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEECCC
T ss_pred CCCCCCCCccccccccCc-ccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC----------cEEEEEEcCC
Confidence 5889999987 57899 99999999999999999999999999999999999998642 8999999875
Q ss_pred -----CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 250 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+.+.+++++++++ +.+|+..|....+++.|++.++|+++|+|++|+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 127 (148)
T 2b5x_A 72 SEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ 127 (148)
T ss_dssp STTTSSHHHHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred CccccCHHHHHHHHHHcC-CCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEe
Confidence 6788999999887 58888888889999999999999999999999999874
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=159.92 Aligned_cols=120 Identities=22% Similarity=0.250 Sum_probs=105.1
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCE-EEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKV-TALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~-vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
+.+|..+|+|+++|.+|+++++++++||+ ++|+|| ++||++|+.++|.|+++++++++.+ +++++|+.| +.+.++
T Consensus 2 l~~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d-~~~~~~ 78 (161)
T 3drn_A 2 VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSD-DINSHK 78 (161)
T ss_dssp CCTTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESC-CHHHHH
T ss_pred CCCCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCC-CHHHHH
Confidence 35799999999999999999999999997 999999 9999999999999999999999876 999999998 578899
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCCC----cCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIEG----IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~----~P~~~lid~~~~~G~i~~~~ 133 (399)
++.+++++....+.|. ...+.+.|++.+ +|+++|||+ +|+++...
T Consensus 79 ~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~~~~~P~~~lid~---~G~i~~~~ 127 (161)
T 3drn_A 79 RFKEKYKLPFILVSDP--DKKIRELYGAKGFILPARITFVIDK---KGIIRHIY 127 (161)
T ss_dssp HHHHHTTCCSEEEECT--TSHHHHHTTCCCSSSCCCEEEEECT---TSBEEEEE
T ss_pred HHHHHhCCCceEEECC--cHHHHHHcCCCCcCcccceEEEECC---CCEEEEEE
Confidence 9999876433223343 278999999999 999999999 99998663
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=157.24 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=103.5
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHh
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 87 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~ 87 (399)
+|..+|+|+++|.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +.++.|++|.+.+.+.++.+
T Consensus 2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v~~d~~~~~~~~~~~ 79 (151)
T 2f9s_A 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMK 79 (151)
T ss_dssp CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHH
T ss_pred CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999998765 99999999999899999998
Q ss_pred cCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 88 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 88 ~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++++....+.|. ...+.+.|++.++|+++++|+ +|+++..
T Consensus 80 ~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 119 (151)
T 2f9s_A 80 SYGVNFPVVLDT--DRQVLDAYDVSPLPTTFLINP---EGKVVKV 119 (151)
T ss_dssp HHTCCSCEEEET--TSHHHHHTTCCSSCEEEEECT---TSEEEEE
T ss_pred HcCCCceEEECC--chHHHHhcCCCCCCeEEEECC---CCcEEEE
Confidence 766422112132 267899999999999999999 9999865
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-21 Score=163.91 Aligned_cols=117 Identities=12% Similarity=0.117 Sum_probs=105.2
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCC-ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|+.++|.|.+++++| . ++++++|++| +
T Consensus 20 ~G~~~p~f~l~~~~G~-~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~---------~~~vv~is~d-~ 86 (167)
T 2jsy_A 20 VGDQAPDFTVLTNSLE-EKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G---------DVNVYTISAD-L 86 (167)
T ss_dssp TTSCCCCCEEEBTTCC-EEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S---------SCEEEEEECS-S
T ss_pred CCCcCCceEEECCCCC-EeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C---------CCEEEEEECC-C
Confidence 6889999999 99999 99999999999999999999 999999999999999999 3 6999999998 4
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhCCCCc------cceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQG------IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~~------~P~~~lid~~G~i~~~~~ 302 (399)
.+..+++.+++++..+|+..| ....+++.|++.. +|+++|||++|+|+.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~ 145 (167)
T 2jsy_A 87 PFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEY 145 (167)
T ss_dssp GGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEe
Confidence 566778888877548888888 7889999999987 499999999999998853
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=154.50 Aligned_cols=112 Identities=18% Similarity=0.238 Sum_probs=103.2
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 254 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 254 (399)
++|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++. ++.+++|++|.+.+.+
T Consensus 3 ~~p~~~l~~~~g~-~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~~~~~ 70 (136)
T 1lu4_A 3 ERLQFTATTLSGA-PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIATRADVGAM 70 (136)
T ss_dssp GGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHHHH
T ss_pred CCCCeEeecCCCC-eecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-----------CcEEEEEEcCCCHHHH
Confidence 5789999 99999 999999999999999999999999999999999998875 4899999999889999
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 255 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 255 ~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.++++ +.+|+..|....+++.|++.++|+++++|++|+++ +.
T Consensus 71 ~~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~ 115 (136)
T 1lu4_A 71 QSFVSKYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-FV 115 (136)
T ss_dssp HHHHHHHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-EE
T ss_pred HHHHHHcC-CCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-EE
Confidence 99999877 47888888889999999999999999999999998 53
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=159.64 Aligned_cols=118 Identities=17% Similarity=0.336 Sum_probs=105.2
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
.+|..+|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++++. ++.+++|++|.
T Consensus 16 ~~G~~~p~f~l~~~~g~-~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~- 84 (158)
T 3hdc_A 16 RTGALAPNFKLPTLSGE-NKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG---------DLVVLAVNVEK- 84 (158)
T ss_dssp CTTSBCCCCEEECTTSC-EEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT---------SEEEEEEECSS-
T ss_pred CCCCcCCCceeEcCCCC-EEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC---------CeEEEEEeCCH-
Confidence 36889999999 99999 99999999999999999999999999999999999999754 79999999986
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.++++++..+ +.+|+..|....+++.|++.++|+++|||++|+++.+..+
T Consensus 85 --~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G 134 (158)
T 3hdc_A 85 --RFPEKYRRAP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTG 134 (158)
T ss_dssp --SCCGGGGGCC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEES
T ss_pred --HHHHHHHHcC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEeC
Confidence 3456666665 5788888888999999999999999999999999988543
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=161.21 Aligned_cols=122 Identities=17% Similarity=0.268 Sum_probs=103.0
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 248 (399)
.+|..+|+|++ +.+|+ .+++++++||++||+||++||+ +|..++|.|.+++++|++. +.+++||+|++|
T Consensus 8 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~-------~~~~~vv~is~d~ 79 (174)
T 1xzo_A 8 PLNYEVEPFTFQNQDGK-NVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-------NIDVRIISFSVDP 79 (174)
T ss_dssp CCCEECCCCEEECTTSC-EEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-------TCCCEEEEEESCT
T ss_pred ccccccCCcEEEcCCCC-EEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhc-------CCcEEEEEEEeCC
Confidence 36888999999 99999 9999999999999999999999 9999999999999999875 235999999998
Q ss_pred --CCHHHHHHHHhcCCCccc---ccCCchhHHHHHh----------------CCCCccceEEEECCCCcEEeccc
Q 015833 249 --RDQTSFESYFGTMPWLAL---PFGDPTIKELTKY----------------FDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 --~~~~~~~~~~~~~~~~~~---p~~~d~~~~~~~~----------------~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+.+.+++++++++ +.+ ++..|.+..+.+. |++..+|+++|||++|+|+.+..
T Consensus 80 ~~d~~~~~~~~~~~~~-~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~ 153 (174)
T 1xzo_A 80 ENDKPKQLKKFAANYP-LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYN 153 (174)
T ss_dssp TTCCHHHHHHHHTTSC-CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEE
T ss_pred CCCCHHHHHHHHHHcC-CCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEc
Confidence 46788999998876 455 6666644544443 45688999999999999998743
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-20 Score=167.18 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=105.4
Q ss_pred hhhcCCCCccc----CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|.++|+|++ +.+|+ .+++++++||++||+||+ +||++|..++|.|.+++++|+++ +++|++||
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~-~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~---------gv~vv~Is 118 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFK-ELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI---------NTEVVACS 118 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT---------TEEEEEEE
T ss_pred CCCCCCCCcEeeeeeCCCCc-EEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 57999999996 44577 899999999999999998 89999999999999999999866 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 247 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
+|. .+..+++.+.. ..+.||+..|.+..+++.||+. .+|++||||++|+|+.+..
T Consensus 119 ~D~-~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~ 185 (240)
T 3qpm_A 119 VDS-QFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITM 185 (240)
T ss_dssp SSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred CCC-HHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEe
Confidence 984 55666777654 2478999999889999999997 7899999999999998853
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-20 Score=163.04 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=103.9
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|.++|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|.+++++ . +++|++|+.| +
T Consensus 22 ~G~~aP~f~l~~~~G~-~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~---------~~~vv~is~d-~ 87 (166)
T 3p7x_A 22 EGDFAPDFTVLDNDLN-QVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---E---------EGIVLTISAD-L 87 (166)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---T---------TSEEEEEESS-C
T ss_pred CCCCCCCeEEEcCCCC-EEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---C---------CCEEEEEECC-C
Confidence 6889999999 99999 99999999999999999 78999999999999999877 3 6899999998 6
Q ss_pred HHHHHHHHhcCCCcccccCCch-hHHHHHhCCCCc------cceEEEECCCCcEEecc
Q 015833 251 QTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQG------IPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~-~~~~~~~~~v~~------~P~~~lid~~G~i~~~~ 301 (399)
.+.++++.++++.-.+|+..|. ...+++.|++.. +|++||||++|+|+.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~ 145 (166)
T 3p7x_A 88 PFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE 145 (166)
T ss_dssp HHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEE
T ss_pred HHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 7788889888774378998888 889999999985 89999999999999874
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-20 Score=161.68 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=103.8
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|.+++++| . +++|++|++| +
T Consensus 19 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~---------~v~vv~Is~d-~ 85 (165)
T 1q98_A 19 VGEIVENFILVGNDLA-DVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--S---------NTIVLCISAD-L 85 (165)
T ss_dssp TTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--T---------TEEEEEEESS-C
T ss_pred CCCCCCCeEEECCCCC-EEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--C---------CCEEEEEeCC-C
Confidence 6889999999 99999 99999999999999999 799999999999999999998 4 6999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCch-hHHHHHhCCCCc---------cceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQG---------IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~-~~~~~~~~~v~~---------~P~~~lid~~G~i~~~~~ 302 (399)
.+..+++.++++.-++|+..|. ...+++.|++.. .|+++|||++|+|+.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~ 147 (165)
T 1q98_A 86 PFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 147 (165)
T ss_dssp HHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEe
Confidence 6778888887763268888886 789999999864 599999999999998854
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-22 Score=169.11 Aligned_cols=118 Identities=27% Similarity=0.409 Sum_probs=107.1
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHH-HHHHHH-hhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS-IYQKIK-QNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~-l~~~~~-~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+ ++++++ +. ++.+++|++|.
T Consensus 9 ~g~~~p~f~l~~~~g~-~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~---------~~~vv~v~~d~ 78 (159)
T 2ls5_A 9 IGEMAPDFTITLTDGK-QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA---------DFALIGIDRDE 78 (159)
Confidence 6888999999 99999 999999999999999999999999999999998 998887 43 79999999997
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhCC--CCccceEEEECCCCcEEecc
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTIKELTKYFD--VQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~--v~~~P~~~lid~~G~i~~~~ 301 (399)
+.+.++++.++++ +.+|+..|....+++.|+ +.++|+++|||++|+++.+.
T Consensus 79 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~ 131 (159)
T 2ls5_A 79 PLEKVLAFAKSTG-VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLT 131 (159)
Confidence 7777888888877 588999999999999999 56699999999999999874
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=164.41 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=98.2
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
.+|.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ +++|++|++|.
T Consensus 24 ~~g~~~p~f~l~~~~G~-~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~v~vv~vs~d~~ 93 (181)
T 2p31_A 24 QQEQDFYDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH---------HFNVLAFPCNQF 93 (181)
T ss_dssp ---CCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred CcCCccCceEeecCCCC-EecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC---------CEEEEEEECcCC
Confidence 36889999999 99999 99999999999999999999999999999999999999876 79999999974
Q ss_pred ------CHHHHHHHHhc-CCCcccccCC--chhHHHH---HhCCCCccc-------eEEEECCCCcEEeccc
Q 015833 250 ------DQTSFESYFGT-MPWLALPFGD--PTIKELT---KYFDVQGIP-------CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 ------~~~~~~~~~~~-~~~~~~p~~~--d~~~~~~---~~~~v~~~P-------~~~lid~~G~i~~~~~ 302 (399)
+.+++++++++ ++ +.+|+.. |.+.... -.|++.++| ++||||++|+++.+..
T Consensus 94 ~~~e~~~~~~~~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~ 164 (181)
T 2p31_A 94 GQQEPDSNKEIESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWD 164 (181)
T ss_dssp TTCCCSCHHHHHHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeC
Confidence 67788888887 55 5677764 2222211 134577889 9999999999998743
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=156.02 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=104.9
Q ss_pred cccccccC-CeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRR-RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p-~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
+.+|..+| +|++.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +.++.|+.|.+.+.+.+
T Consensus 3 l~~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~ 80 (152)
T 2lja_A 3 LRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWEN 80 (152)
T ss_dssp TTTTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS--EEEEEEECCSCHHHHHH
T ss_pred cccCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC--eEEEEEEccCcHHHHHH
Confidence 45688999 9999999999999999999999999999999999999999999999998654 99999999999889999
Q ss_pred hHhcCCCccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 85 YRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 85 ~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++.++...++ .|. ...+.+.|++.++|+++++++ +|+++..
T Consensus 81 ~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 124 (152)
T 2lja_A 81 MVTKDQLKGIQLHMGT--DRTFMDAYLINGIPRFILLDR---DGKIISA 124 (152)
T ss_dssp HHHHHTCCSEEEECSS--CTHHHHHTTCCSSCCEEEECT---TSCEEES
T ss_pred HHHhcCCCCceeecCc--chhHHHHcCcCCCCEEEEECC---CCeEEEc
Confidence 988765432222 132 268899999999999999999 9999876
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=159.41 Aligned_cols=120 Identities=13% Similarity=0.189 Sum_probs=97.7
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
..|..+|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ ++.|++|++|.
T Consensus 7 ~~g~~~p~f~l~~~~g~-~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~vs~d~~ 76 (170)
T 2p5q_A 7 KNPESVHDFTVKDAKEN-DVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ---------GLEILAFPCNQF 76 (170)
T ss_dssp ---CCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCTT
T ss_pred CCCccccceEEEcCCCC-EecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC---------CEEEEEEECCCC
Confidence 36889999999 99999 99999999999999999999999999999999999999876 79999999973
Q ss_pred ------CHHHHHHHHh-cCCCcccccC--CchhHHH----H-----HhCCC--Cccc---eEEEECCCCcEEeccc
Q 015833 250 ------DQTSFESYFG-TMPWLALPFG--DPTIKEL----T-----KYFDV--QGIP---CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 ------~~~~~~~~~~-~~~~~~~p~~--~d~~~~~----~-----~~~~v--~~~P---~~~lid~~G~i~~~~~ 302 (399)
+.+.++++++ .++ +.+|+. .|.+..+ . +.+++ .++| +++|||++|+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~ 151 (170)
T 2p5q_A 77 GEEEPGTNDQITDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYY 151 (170)
T ss_dssp TTCCCSCHHHHHHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeC
Confidence 6778888888 554 566766 3433222 2 22466 7788 9999999999998853
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-20 Score=161.44 Aligned_cols=118 Identities=13% Similarity=0.165 Sum_probs=88.8
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 248 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 248 (399)
-+..+|+|++ +.+|+ .+++++++||++||+||++||++|+ ++|.|.+++++|+++ ++.|++|++|
T Consensus 8 ~~~~~~~f~l~d~~G~-~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~---------~v~vv~vs~d~~~ 76 (171)
T 3cmi_A 8 HMSEFYKLAPVDKKGQ-PFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE---------GFTIIGFPCNQFG 76 (171)
T ss_dssp --CGGGGCCCBBTTSC-BCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG---------TEEEEEEEECSCC
T ss_pred chhheeeeEEEcCCCC-EecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC---------CeEEEEEECcccC
Confidence 3567899999 99999 9999999999999999999999999 999999999999876 7999999986
Q ss_pred ----CCHHHHHHHH-hcCCCcccccCCchh--HH----H-----HHhCCCCccc------eEEEECCCCcEEeccc
Q 015833 249 ----RDQTSFESYF-GTMPWLALPFGDPTI--KE----L-----TKYFDVQGIP------CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 ----~~~~~~~~~~-~~~~~~~~p~~~d~~--~~----~-----~~~~~v~~~P------~~~lid~~G~i~~~~~ 302 (399)
.+.+.+++++ ++.+ +.+|+..|.+ .. + .+.|++.++| +++|||++|+++.+..
T Consensus 77 ~~~~d~~~~~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~ 151 (171)
T 3cmi_A 77 HQEPGSDEEIAQFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYS 151 (171)
T ss_dssp ------------------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEEC
T ss_pred CCCCCCHHHHHHHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeC
Confidence 3556788888 6655 5677765421 11 1 2468999999 9999999999998853
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=159.30 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=105.4
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCc--EEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGK--TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk--~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+|..+|+|++ +.+|+ .+++++++|| +++|+|| ++||++|..++|.|.+++++|+++ + +|++|++
T Consensus 8 ~~G~~~P~f~l~~~~G~-~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~-~vv~is~ 76 (159)
T 2a4v_A 8 EIGDPIPDLSLLNEDND-SISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---------A-AVFGLSA 76 (159)
T ss_dssp CTTCBCCSCEEECTTSC-EEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---------C-EEEEEES
T ss_pred CCCCCCCCeEEECCCCC-EEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC---------C-cEEEEeC
Confidence 46889999999 99999 9999999987 8999997 899999999999999999999865 6 9999999
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccc------eEEEECCCCcEEeccc
Q 015833 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP------CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P------~~~lid~~G~i~~~~~ 302 (399)
| +.+..+++.++++ +++|+..|.+..+++.||+...| +++|| ++|+|+.+..
T Consensus 77 d-~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~ 134 (159)
T 2a4v_A 77 D-SVTSQKKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRV 134 (159)
T ss_dssp C-CHHHHHHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEE
T ss_pred C-CHHHHHHHHHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEc
Confidence 9 5777888888776 57899888889999999999988 89999 9999998853
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-20 Score=159.87 Aligned_cols=123 Identities=17% Similarity=0.185 Sum_probs=105.5
Q ss_pred ccccccccccCCeE--EecCCCCEEeccccCCCEEEEEEec-CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 3 LSQWYVQQLRRRMT--STKEIGEEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 3 ~~~~~~~~~~p~f~--l~d~~G~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
+..+.+|..+|+|+ ++|.+|+++++++++||+++|+||+ +||++|+.++|.|+++++++++.+ +++++|+.| +.
T Consensus 4 m~~l~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d-~~ 80 (163)
T 3gkn_A 4 MTDAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD-SV 80 (163)
T ss_dssp CCCCCCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS-CH
T ss_pred ccccccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CH
Confidence 44577899999999 9999999999999999999999997 999999999999999999999876 999999998 77
Q ss_pred HHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC------------cCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------------~P~~~lid~~~~~G~i~~~~ 133 (399)
+.++++.++++.....+.|.. ..+.+.|++.. +|+++|||+ +|+|+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~---~G~i~~~~ 141 (163)
T 3gkn_A 81 KSHDNFCAKQGFAFPLVSDGD--EALCRAFDVIKEKNMYGKQVLGIERSTFLLSP---EGQVVQAW 141 (163)
T ss_dssp HHHHHHHHHHCCSSCEEECTT--CHHHHHTTCEEEEEETTEEEEEECCEEEEECT---TSCEEEEE
T ss_pred HHHHHHHHHhCCCceEEECCc--HHHHHHhCCccccccccccccCcceEEEEECC---CCeEEEEE
Confidence 888888886553222222432 68889999977 999999999 99998653
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-21 Score=164.54 Aligned_cols=122 Identities=33% Similarity=0.691 Sum_probs=108.2
Q ss_pred CCCCccc-CCCCCceeeccc-cCCc-EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 015833 176 HDRGYLL-GHPPDEKVPVSS-LVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 252 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~-~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 252 (399)
..|+|++ +.+|+ .+++++ ++|| +++|+||++||++|+.++|.|.++++++++. +.++.+++|++|.+.+
T Consensus 3 ~~p~~~l~~~~g~-~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-------~~~~~v~~v~~d~~~~ 74 (143)
T 2lus_A 3 FIQGIKLVKKNRC-EVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDD-------SAPFEIIFVSSDRSED 74 (143)
Confidence 4689999 99999 999999 9999 9999999999999999999999999999543 2379999999998888
Q ss_pred HHHHHHhcC--CCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchh
Q 015833 253 SFESYFGTM--PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 305 (399)
Q Consensus 253 ~~~~~~~~~--~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 305 (399)
.++++++++ +|..+++..+....+++.|++.++|+++|||++|+++.+++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 129 (143)
T 2lus_A 75 DMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGE 129 (143)
Confidence 899998866 56777888888889999999999999999999999999876544
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-20 Score=159.48 Aligned_cols=120 Identities=8% Similarity=0.063 Sum_probs=96.5
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
.+|..+|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ +++|++|++|.
T Consensus 6 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~ 75 (169)
T 2v1m_A 6 KSWNSIYEFTVKDINGV-DVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK---------GLRILAFPCNQF 75 (169)
T ss_dssp -CCCSGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred cCCcccccceeecCCCC-CccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC---------CeEEEEEECCcc
Confidence 36889999999 99999 99999999999999999999999999999999999999876 79999999973
Q ss_pred ------CHHHHHHH-HhcCCCcccccCC--chhHHH----H-----HhCC-----CCccceEEEECCCCcEEeccc
Q 015833 250 ------DQTSFESY-FGTMPWLALPFGD--PTIKEL----T-----KYFD-----VQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 ------~~~~~~~~-~~~~~~~~~p~~~--d~~~~~----~-----~~~~-----v~~~P~~~lid~~G~i~~~~~ 302 (399)
+.+.++++ .++++ +.+|+.. |..... . ..++ +..+|+++|||++|+++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~ 150 (169)
T 2v1m_A 76 GGQEPWAEAEIKKFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYS 150 (169)
T ss_dssp TTCCCSCHHHHHHHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcC
Confidence 45778888 36555 4566653 322221 1 1135 556799999999999998853
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=162.35 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=95.7
Q ss_pred hhcCCCCccc-CCC-CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 173 LTNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~-g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
.+..+|+|++ +.+ |+ .+++++++||+|||+|||+||++|+.++|.|++++++|+++ +++||+|++|.
T Consensus 22 ~~~~~p~f~l~~~~~G~-~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~---------g~~vv~v~~d~~ 91 (208)
T 2f8a_A 22 SMQSVYAFSARPLAGGE-PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR---------GLVVLGFPCNQF 91 (208)
T ss_dssp CCCCGGGCEECBTTCSS-CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred hcCccCceEeeeCCCCC-CccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC---------CeEEEEEECCcc
Confidence 4567899999 888 99 99999999999999999999999999999999999999876 79999999871
Q ss_pred ------CHHHHHHHHh------cCCCcccccCCch------h----HHHHHhC-------------------------CC
Q 015833 250 ------DQTSFESYFG------TMPWLALPFGDPT------I----KELTKYF-------------------------DV 282 (399)
Q Consensus 250 ------~~~~~~~~~~------~~~~~~~p~~~d~------~----~~~~~~~-------------------------~v 282 (399)
+.+++++|++ +.+ ++||+..+. . ..+...+ ++
T Consensus 92 ~~~e~d~~~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (208)
T 2f8a_A 92 GHQENAKNEEILNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDV 170 (208)
T ss_dssp TTTTCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCC
T ss_pred cccCCCCHHHHHHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCcc
Confidence 4577888887 444 677765321 0 1111122 36
Q ss_pred CccceEEEECCCCcEEeccc
Q 015833 283 QGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 283 ~~~P~~~lid~~G~i~~~~~ 302 (399)
...|++||||++|+|+.+..
T Consensus 171 ~~~p~tflID~~G~i~~~~~ 190 (208)
T 2f8a_A 171 AWNFEKFLVGPDGVPLRRYS 190 (208)
T ss_dssp CSTTCEEEECTTSCEEEEEC
T ss_pred ccCceEEEEcCCCcEEEEeC
Confidence 67799999999999998854
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-21 Score=162.27 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=95.8
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
+.+|..||+|+|+|.+|++++|++++||+++|+|| ++||++|+.++|.|+++++++++.+ +++++||.|. .+..++
T Consensus 4 l~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d~-~~~~~~ 80 (157)
T 4g2e_A 4 VEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVDP-PFSNKA 80 (157)
T ss_dssp CCTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESSC-HHHHHH
T ss_pred CCCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeecccc-hhHHHH
Confidence 46899999999999999999999999999999999 9999999999999999999998876 9999999974 566778
Q ss_pred hHhcCCCcccccCChHHHHHHHhhcCCC-----------CcCeEEEEcCCCCCCCeeecc
Q 015833 85 YRACMPWLAVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.++.++.....+|.+ .++++.|||. ..|+++|||+ +|+|++..
T Consensus 81 ~~~~~~~~~p~l~D~~--~~v~~~ygv~~~~~~~~~~~~~~p~tflID~---~G~I~~~~ 135 (157)
T 4g2e_A 81 FKEHNKLNFTILSDYN--REVVKKYNVAWEFPALPGYVLAKRAVFVIDK---EGKVRYKW 135 (157)
T ss_dssp HHHHTTCCSEEEECTT--SHHHHHTTCEEECTTSTTCEEECEEEEEECT---TSBEEEEE
T ss_pred HHHHcCCcEEEEEcCC--cHHHHHcCCccccccCCCcceeeeeEEEECC---CCEEEEEE
Confidence 8887664322223443 7889999883 4688999999 99998664
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-20 Score=161.69 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=99.6
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 249 (399)
.+.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ +++|++|++|.
T Consensus 24 ~~~~~p~f~l~~~~G~-~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~vs~d~~~ 93 (190)
T 2vup_A 24 AASSIFDFEVLDADHK-PYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ---------GFTVLAFPCNQFG 93 (190)
T ss_dssp CCCSGGGSCCBBTTSS-BCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TCEEEEEECCCST
T ss_pred CCCcccCeEEEcCCCC-EEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC---------CeEEEEEEcCccC
Confidence 4678899999 99999 99999999999999999999999999999999999999876 79999999983
Q ss_pred -----CHHHHHHHH-hcCCCcccccCC--chhHH----H-----HHhCCCCccc------eEEEECCCCcEEecc
Q 015833 250 -----DQTSFESYF-GTMPWLALPFGD--PTIKE----L-----TKYFDVQGIP------CLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 -----~~~~~~~~~-~~~~~~~~p~~~--d~~~~----~-----~~~~~v~~~P------~~~lid~~G~i~~~~ 301 (399)
+.+++++++ ++.+ +.+|+.. |.... + .+.|++.++| +++|||++|+++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~ 167 (190)
T 2vup_A 94 GQEPGNEEEIKEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERF 167 (190)
T ss_dssp TCCCSCHHHHHHHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEE
T ss_pred CCCCCCHHHHHHHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEE
Confidence 677888888 6655 5666664 32222 2 2347999999 999999999999874
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-20 Score=175.99 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=109.5
Q ss_pred hhhcCCCCcc-----c-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 172 LLTNHDRGYL-----L-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 172 ~~g~~~p~f~-----l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
.+|..+|+|+ + +.+|+ .+++++++||+|||+||++||++|+.++|.|.+++++|+++ ++.|++|
T Consensus 52 ~vG~~aPdF~~~~~wL~d~dG~-~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~---------~v~vi~V 121 (352)
T 2hyx_A 52 ESCGTAPDLKGITGWLNTPGNK-PIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS---------GLAVIGV 121 (352)
T ss_dssp CCCCBCCCCCSCCEEESSGGGC-CCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEE
T ss_pred CCCCcCCCccccccccCCCCCC-EEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC---------CeEEEEE
Confidence 4688999999 8 89999 99999999999999999999999999999999999999876 7999999
Q ss_pred ecC-----CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 246 STD-----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 246 s~d-----~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++| .+.+.+++++++++ +.+|+..|....+++.|+|.++|+++|||++|+++.+.
T Consensus 122 s~d~~~~~d~~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~ 181 (352)
T 2hyx_A 122 HTPEYAFEKVPGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIK 181 (352)
T ss_dssp ECCSSGGGGCHHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEE
T ss_pred ECCcccccCCHHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEE
Confidence 986 46788999998877 67888888889999999999999999999999999874
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-20 Score=158.71 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=99.9
Q ss_pred cc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-----CCHHHH
Q 015833 181 LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSF 254 (399)
Q Consensus 181 ~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-----~~~~~~ 254 (399)
++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+.. ++.||+|++| .+.+.+
T Consensus 22 ~l~~~~g~-~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~~~~~ 91 (164)
T 2h30_A 22 TMKTADNR-PASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS---------SANLITVASPGFLHEKKDGEF 91 (164)
T ss_dssp TCEETTSS-BGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT---------TSEEEEEECTTSTTCCCTTHH
T ss_pred ccCCCCCC-EeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CcEEEEEEcCCCccccCHHHH
Confidence 66 88999 99999999999999999999999999999999999998765 7999999985 356788
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 255 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 255 ~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++++..+++..+++..|....+++.|+|.++|+++|||++|+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 138 (164)
T 2h30_A 92 QKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIV 138 (164)
T ss_dssp HHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred HHHHHhCCCCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEE
Confidence 99888877655888888889999999999999999999999999874
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-20 Score=166.97 Aligned_cols=123 Identities=11% Similarity=0.141 Sum_probs=106.4
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCC-EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD------- 76 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D------- 76 (399)
.+.+|..+|+|+|+|.+|+++++++++|| ++||+||++||++|+.++|.|+++++++++.+ +++++|++|
T Consensus 31 ~l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~~~~~~~ 108 (218)
T 3u5r_E 31 SITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG--LAVVAINSNDAQAFPE 108 (218)
T ss_dssp CCCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT--EEEEEEECSCTTTCGG
T ss_pred cCCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCccccccc
Confidence 45679999999999999999999999999 59999999999999999999999999998876 999999997
Q ss_pred CChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccc
Q 015833 77 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
.+.+.++++.+++++....+.|. ...+.+.|++.++|+++|||+ +|+++....
T Consensus 109 d~~~~~~~~~~~~~~~~~~l~D~--~~~~~~~~~v~~~P~~~liD~---~G~i~~~g~ 161 (218)
T 3u5r_E 109 ETLERVGAEVKAYGYGFPYLKDA--SQSVAKAYGAACTPDFFLYDR---ERRLVYHGQ 161 (218)
T ss_dssp GSHHHHHHHHHHHTCCSCEEECT--TCHHHHHHTCCEESEEEEECT---TCBEEEEEC
T ss_pred CCHHHHHHHHHHhCCCccEEECC--ccHHHHHcCCCCCCeEEEECC---CCcEEEecc
Confidence 67888899988766422222243 278999999999999999999 999986643
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=154.00 Aligned_cols=119 Identities=23% Similarity=0.339 Sum_probs=103.8
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHHh
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNY 85 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~-~~~~~~~ 85 (399)
.+|..+|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.+++|++|.+ .+.+.++
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~ 80 (154)
T 3kcm_A 3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAVEEF 80 (154)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCTTHHHHHHHH
T ss_pred CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEEcCCcchHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999998765 99999999987 7888888
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+++++....+.|. ...+.+.|++.++|+++|+|+ +|+++..
T Consensus 81 ~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 122 (154)
T 3kcm_A 81 FRKTGFTLPVLLDA--DKRVGKLYGTTGVPETFVIDR---HGVILKK 122 (154)
T ss_dssp HHHHCCCCCEEECT--TCHHHHHHTCCSBCEEEEECT---TSBEEEE
T ss_pred HHHcCCCeeEEecC--chHHHHHhCCCCCCeEEEECC---CCcEEEE
Confidence 88665322222233 267899999999999999999 9999865
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-20 Score=158.38 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=101.1
Q ss_pred cccccCCeEEecC--CCCEEeccccCCCEEEEEEecCCCcccHhh-HHHHHHHHHHHhcCCCcEEEEEEecC------CC
Q 015833 8 VQQLRRRMTSTKE--IGEEVKVSDLEGKVTALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDFEVVFVSSD------ED 78 (399)
Q Consensus 8 ~~~~~p~f~l~d~--~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~ii~Vs~D------~~ 78 (399)
.|..+|+|++++. +|+.+++++++||+++|+||++||++|+.+ +|.|+++++++++.+ +.+++|++| .+
T Consensus 2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~ 79 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHHEAMT 79 (158)
T ss_dssp CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGSC
T ss_pred CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC--EEEEEEEecccccccCC
Confidence 4788999999994 889999999999999999999999999997 999999999998765 999999984 57
Q ss_pred hHHHHHhHhcCCCcccccCChHHH---HHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 79 LNAFNNYRACMPWLAVPYSDLETK---KALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~d~~~~---~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+.++++.+++++....+.|.... ..+.+.|++.++|+++|||+ +|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 133 (158)
T 3eyt_A 80 PISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDK---AGDLRAH 133 (158)
T ss_dssp HHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECT---TSEEEEE
T ss_pred HHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECC---CCCEEEE
Confidence 889999999776432222232211 16899999999999999999 9999865
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=154.38 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=103.4
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
....|..+|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +.++.|+.|.+.+.+.+
T Consensus 7 ~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--v~~v~v~~d~~~~~~~~ 84 (165)
T 3or5_A 7 ADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKN 84 (165)
T ss_dssp CCCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT--EEEEEEECSCCHHHHHH
T ss_pred hhcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999998765 99999999999999999
Q ss_pred hHhcCCCcccccCChHHHHHHHhhc------CCCCcCeEEEEcCCCCCCCeeec
Q 015833 85 YRACMPWLAVPYSDLETKKALNRKF------DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 85 ~~~~~~~~~~~~~d~~~~~~l~~~~------~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++.++....+.+. ..+.+.| ++.++|+++++|+ +|+++..
T Consensus 85 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~ 132 (165)
T 3or5_A 85 YMKTQGIIYPVMMAT---PELIRAFNGYIDGGITGIPTSFVIDA---SGNVSGV 132 (165)
T ss_dssp HHHHHTCCSCEEECC---HHHHHHHHTTSTTCSCSSSEEEEECT---TSBEEEE
T ss_pred HHHHcCCCCceEecC---HHHHHHHhhhhccCCCCCCeEEEECC---CCcEEEE
Confidence 988765322222232 3666666 8999999999999 9999865
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-20 Score=158.72 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=105.4
Q ss_pred hhhcCCCCccc---CCCC--Cceeeccc-cCCcEEEEEEe-cCCChhhh-hhHHHHHHHHHHHHhhhhhcCCCCCCEE-E
Q 015833 172 LLTNHDRGYLL---GHPP--DEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFE-V 242 (399)
Q Consensus 172 ~~g~~~p~f~l---~~~g--~~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~-v 242 (399)
.+|..+|+|++ +.+| + .+++++ ++||+++|+|| ++||++|. .++|.|.+++++|+++ +++ |
T Consensus 5 ~~G~~aP~f~l~~~~~~G~~~-~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~---------~v~~v 74 (162)
T 1tp9_A 5 AVGDVLPDGKLAYFDEQDQLQ-EVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK---------GVTEI 74 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEE-EEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT---------TCCCE
T ss_pred CCCCCCCCeEEEeecCCCCce-eEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEE
Confidence 36889999987 7889 8 999999 89999999999 89999999 9999999999999876 799 9
Q ss_pred EEEecCCCHHHHHHHHhcCCCc-ccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEecc
Q 015833 243 VFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 243 v~is~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~ 301 (399)
++||+| +.+..+++.++++.- ++|+..|.+..+++.||+. .+|++|||| +|+|++..
T Consensus 75 v~Is~d-~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~ 143 (162)
T 1tp9_A 75 LCISVN-DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp EEEESS-CHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred EEEECC-CHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence 999998 567888888887732 6899999899999999986 289999999 99999884
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-20 Score=160.75 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=102.7
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|.++|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|.+++++| . +++|++|++| +
T Consensus 23 ~g~~~P~f~l~~~~G~-~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~---------~v~vv~Is~d-~ 89 (171)
T 2yzh_A 23 VGDRAPEAVVVTKDLQ-EKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E---------GVDVTVVSMD-L 89 (171)
T ss_dssp TTSBCCCEEEEETTSC-EEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T---------TEEEEEEESS-C
T ss_pred CCCcCCceEEECCCCC-EeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C---------CceEEEEeCC-C
Confidence 6888999999 99999 99999999999999999 799999999999999999888 3 6999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhCCCCc---------cceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQG---------IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~~---------~P~~~lid~~G~i~~~~~ 302 (399)
.+..+++.++++.-.+|+..| ....+ +.|++.. +|+++|||++|+|+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~ 150 (171)
T 2yzh_A 90 PFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQL 150 (171)
T ss_dssp HHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEe
Confidence 677888888877327888888 77888 9999862 699999999999998853
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-20 Score=159.29 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=103.5
Q ss_pred cccccccccCCeEEecCCC--CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 4 SQWYVQQLRRRMTSTKEIG--EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G--~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
....+|..+|+|++++.+| +.+++++++||+++|+||++||++|+.++|.|++++++ + +++++|++|.+.+.
T Consensus 28 ~~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~vs~~d~~~~ 101 (176)
T 3kh7_A 28 PSALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G--VVIYGINYKDDNAA 101 (176)
T ss_dssp TTTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CEEEEEEESCCHHH
T ss_pred cccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C--CEEEEEeCCCCHHH
Confidence 4567899999999999999 89999999999999999999999999999999998876 3 99999999999999
Q ss_pred HHHhHhcCCCcccc-cCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 82 FNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 82 ~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++.+++++.... +.|. ...+.+.|++.++|+++|||+ +|+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 148 (176)
T 3kh7_A 102 AIKWLNELHNPYLLSISDA--DGTLGLDLGVYGAPETYLIDK---QGIIRHK 148 (176)
T ss_dssp HHHHHHHTTCCCSEEEEET--TCHHHHHHTCCSSCEEEEECT---TCBEEEE
T ss_pred HHHHHHHcCCCCceEEECC--cchHHHHcCCCCCCeEEEECC---CCeEEEE
Confidence 99999988754332 2233 378899999999999999999 9999865
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.3e-20 Score=163.99 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=105.0
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||+|+|+|| ++||++|..++|.|.+++++| + +++|++||+| +
T Consensus 54 ~G~~aPdf~l~d~~G~-~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~---------~v~vv~Is~D-~ 120 (200)
T 3zrd_A 54 IGDKAKDFTLVAKDLS-DVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--E---------NTVVLCISSD-L 120 (200)
T ss_dssp TTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--T---------TEEEEEEESS-C
T ss_pred CCCCCCCeEEECCCCC-EEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--C---------CCEEEEEECC-C
Confidence 6889999999 99999 99999999999999999 679999999999999999998 3 6999999998 6
Q ss_pred HHHHHHHHhcCCCcccccCCch-hHHHHHhCCCC---------ccceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~-~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~ 302 (399)
.+.++++.++++.-.+|+..|. +..+++.||+. .+|++||||++|+|+.+..
T Consensus 121 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~ 182 (200)
T 3zrd_A 121 PFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSEL 182 (200)
T ss_dssp HHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHHHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEe
Confidence 6778888888763388998888 89999999986 3699999999999998853
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=160.61 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=106.2
Q ss_pred hhcCCCCccc-CC--CCC--ceeecccc-CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 173 LTNHDRGYLL-GH--PPD--EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 173 ~g~~~p~f~l-~~--~g~--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
+|..+|+|++ +. +|+ ..++++++ +||+++|+|| ++||++|+.++|.|.+++++|+++ +++|++|
T Consensus 3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~I 73 (198)
T 1zof_A 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK---------GFNVIGV 73 (198)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT---------TEEEEEE
T ss_pred CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 6889999999 77 774 27999999 9999999999 999999999999999999999876 7999999
Q ss_pred ecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC-----ccceEEEECCCCcEEeccc
Q 015833 246 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~ 302 (399)
++|. .+..+++.+.. ..+++|+..|....+++.|++. ++|+++|||++|+|+.+..
T Consensus 74 s~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~ 140 (198)
T 1zof_A 74 SIDS-EQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVI 140 (198)
T ss_dssp ESSC-HHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEE
T ss_pred ECCC-HHHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEe
Confidence 9994 67778888762 3367888888889999999999 9999999999999998853
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-20 Score=159.51 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=98.6
Q ss_pred HHhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 170 INLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 170 ~~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+..|..+|+|++ +.+|+ .+++++++||+|||+||++||++|+.++|.|.+++++|+++ ++.|++|++|
T Consensus 11 ~~~~~~~~p~f~l~d~~G~-~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~~~vi~is~d 80 (180)
T 3kij_A 11 LKPKINSFYAFEVKDAKGR-TVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS---------HFSVLAFPCN 80 (180)
T ss_dssp CCCCCCCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT---------SEEEEEEECC
T ss_pred hcCCcCcccceEEecCCCC-EecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC---------CeEEEEEECC
Confidence 3456888999999 99999 99999999999999999999999999999999999999865 7999999987
Q ss_pred C-------CHHHHHHHHhc-CCCcccccCC-----chhH-HHHHhC--CCCccce----EEEECCCCcEEecccc
Q 015833 249 R-------DQTSFESYFGT-MPWLALPFGD-----PTIK-ELTKYF--DVQGIPC----LVIIGPEGKTVTKQGR 303 (399)
Q Consensus 249 ~-------~~~~~~~~~~~-~~~~~~p~~~-----d~~~-~~~~~~--~v~~~P~----~~lid~~G~i~~~~~~ 303 (399)
. +.+++++++++ .+ +.+|+.. +... .+...+ .+.++|+ +||||++|+++.+..+
T Consensus 81 ~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g 154 (180)
T 3kij_A 81 QFGESEPRPSKEVESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP 154 (180)
T ss_dssp CSTTCCCSCHHHHHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECT
T ss_pred ccccCCCCCHHHHHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECC
Confidence 5 77889999887 55 5666632 1111 111111 1246888 9999999999988543
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-19 Score=152.99 Aligned_cols=118 Identities=18% Similarity=0.307 Sum_probs=100.2
Q ss_pred CCccc-CCCCCceeeccccCCcEEEEEEecCCChh-hhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHH
Q 015833 178 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQT 252 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~ 252 (399)
|+|++ +.+|+ .+++++++||++||+||++||++ |+.++|.|.+++++|++. ....+++|++|++|. +.+
T Consensus 7 p~f~l~~~~G~-~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~-----~~~~~v~vv~is~d~~~d~~~ 80 (171)
T 2rli_A 7 GDFHLLDHRGR-ARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAE-----PGLPPVQPVFITVDPERDDVE 80 (171)
T ss_dssp SCCEEEETTSC-EEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHS-----TTSCCEEEEEEESCSTTCCHH
T ss_pred CCeEEEeCCCC-EEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhc-----cCCCceEEEEEEECCCCCCHH
Confidence 89999 99999 99999999999999999999998 999999999999999751 001379999999984 577
Q ss_pred HHHHHHhcCCCcccccCCc---hhHHHHHhCCCCccc---------------eEEEECCCCcEEeccc
Q 015833 253 SFESYFGTMPWLALPFGDP---TIKELTKYFDVQGIP---------------CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 253 ~~~~~~~~~~~~~~p~~~d---~~~~~~~~~~v~~~P---------------~~~lid~~G~i~~~~~ 302 (399)
.+++++++++ +.+++..+ ....+++.|++..+| +++|||++|+++.+..
T Consensus 81 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 147 (171)
T 2rli_A 81 AMARYVQDFH-PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYG 147 (171)
T ss_dssp HHHHHHHTTC-TTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHcC-CCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEEC
Confidence 8899998776 45555443 446899999999988 8999999999998753
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=157.43 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=117.5
Q ss_pred CCEEEEEEecCC--CcccHhhHHHHHHHHHHHhc-CCC-cEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 32 GKVTALYFSANW--YPPCGNFTGVLVDVYEELRN-NGS-DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 32 gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~-~~~-~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
+++|+|.||++| |++|+.+.+.+.++++.... +|+ .+.++.++.|.. ..+++
T Consensus 25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~------------------------~~~~~ 80 (243)
T 2hls_A 25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESD------------------------SDKFS 80 (243)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTT------------------------HHHHH
T ss_pred CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcC------------------------HHHHH
Confidence 468899999999 99999999999999987421 221 166666654422 78899
Q ss_pred hcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCCCCC
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD 187 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~ 187 (399)
.|+|+++|++.+++ . ..... |. + ....+..+..... .. +...+. + +..
T Consensus 81 ~~gv~~~Pt~~i~~----g-~~~~~---------G~---~-~~~~l~~fv~~~l---------~~-~~~~~~--l--~~~ 128 (243)
T 2hls_A 81 EFKVERVPTVAFLG----G-EVRWT---------GI---P-AGEEIRALVEVIM---------RL-SEDESG--L--EDA 128 (243)
T ss_dssp HTTCCSSSEEEETT----T-TEEEE---------SC---C-CTTHHHHHHHHHH---------HH-HTTCCC--C--CHH
T ss_pred hcCCCcCCEEEEEC----C-ceeEc---------CC---C-cHHHHHHHHHHHH---------hc-cCCCCC--C--CHH
Confidence 99999999999983 3 11111 11 1 1111111111000 00 001010 0 000
Q ss_pred ceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 015833 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 267 (399)
Q Consensus 188 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 267 (399)
..-.+.++.++++++.||++||++|+.+.|.|++++.+++.. ..+++.+..|.++..
T Consensus 129 ~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~------~~~~v~~~~vd~~~~----------------- 185 (243)
T 2hls_A 129 TKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQ------GNPVILSEAVEAYEN----------------- 185 (243)
T ss_dssp HHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHT------TCCCEEEEEEETTTC-----------------
T ss_pred HHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccc------cCCcEEEEEEECccC-----------------
Confidence 000123456888999999999999999999999999988521 013678888877644
Q ss_pred cCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 268 FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 268 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+++.|+|.++||+++ +|+++..
T Consensus 186 ------~~~~~~~~V~~vPt~~i---~G~~~~~ 209 (243)
T 2hls_A 186 ------PDIADKYGVMSVPSIAI---NGYLVFV 209 (243)
T ss_dssp ------HHHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred ------HHHHHHcCCeeeCeEEE---CCEEEEe
Confidence 67889999999999988 7887633
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-20 Score=159.90 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=99.4
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCC-ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||++||+||++| |++|+.++|.|.+++++ . +++||+|++| +
T Consensus 20 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~---------~v~vv~Is~D-~ 85 (175)
T 1xvq_A 20 VGSPAPAFTLTGGDLG-VISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S---------GATVLCVSKD-L 85 (175)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T---------TCEEEEEESS-C
T ss_pred cCCcCCCeEEECCCCC-EEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c---------CCEEEEEECC-C
Confidence 6889999999 99999 99999999999999999998 99999999999999988 3 6899999998 4
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCCcc---------ceEEEECCCCcEEecc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~ 301 (399)
.+..+++.++.++..+|+..|....+++.|++... |+++|||++|+|+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~ 145 (175)
T 1xvq_A 86 PFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE 145 (175)
T ss_dssp HHHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence 56677787777644788888888899999999887 9999999999999885
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=153.16 Aligned_cols=117 Identities=20% Similarity=0.325 Sum_probs=102.1
Q ss_pred HhhhcCCCCccc-CCCC--------CceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEE
Q 015833 171 NLLTNHDRGYLL-GHPP--------DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE 241 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g--------~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 241 (399)
..+|..+|+|.+ +.+| + .+++++++||+++|+||++||++|+.++|.|.+++++ . ++.
T Consensus 8 ~~~g~~~p~f~l~~~~g~~~~~~~~~-~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~----------~v~ 74 (156)
T 1kng_A 8 ALIGRPAPQTALPPLEGLQADNVQVP-GLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD--K----------RFQ 74 (156)
T ss_dssp ----CBCCCCCBCCCTTCEETTEECC-CBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T----------TSE
T ss_pred HHhCCCCCCceeeeccCcccccccCc-eechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C----------CeE
Confidence 357999999999 8888 8 9999999999999999999999999999999988765 2 589
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 242 VVFVSTDRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 242 vv~is~d~~~~~~~~~~~~~~~~~~p-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++|++|.+.+.++++++.++ +.+| +..|....+++.|++.++|+++++|++|+++.+.
T Consensus 75 ~v~v~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 134 (156)
T 1kng_A 75 LVGINYKDAADNARRFLGRYG-NPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKL 134 (156)
T ss_dssp EEEEEESCCHHHHHHHHHHHC-CCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHcC-CCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEE
Confidence 999999989999999998877 4666 6667788999999999999999999999999874
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=166.52 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=105.6
Q ss_pred HhhhcCCCCccc----CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 171 NLLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 171 ~~~g~~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
..+|.++|+|++ +.+|+ .+++++++||++||+|| ++||++|..++|.|.+++++|+++ +++||+|
T Consensus 62 l~vG~~aPdF~l~~l~d~~G~-~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~---------gv~vv~I 131 (254)
T 3tjj_A 62 AKISKPAPYWEGTAVIDGEFK-ELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI---------NTEVVAC 131 (254)
T ss_dssp CCTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred cCCCCCCCCcEeeeecCCCCc-EEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 347999999996 44678 99999999999999999 899999999999999999999866 8999999
Q ss_pred ecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 246 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
++| +.+..+++++.. ..+.||+..|....+++.||+. .+|++||||++|+|+.+..
T Consensus 132 S~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~ 199 (254)
T 3tjj_A 132 SVD-SQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 199 (254)
T ss_dssp ESS-CHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred cCC-CHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEe
Confidence 999 456667777654 2478999999889999999995 5899999999999998853
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=156.09 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=104.7
Q ss_pred hhcCCCCccc--CCCCCceeecccc-CCcEEEEEEe-cCCChhhhh-hHHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEe
Q 015833 173 LTNHDRGYLL--GHPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVS 246 (399)
Q Consensus 173 ~g~~~p~f~l--~~~g~~~~~l~~~-~gk~vll~F~-a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~~-~vv~is 246 (399)
+|..+|+|++ +.+|+ .++++++ +||+++|+|| ++|||+|.. ++|.|.+++++|+++ ++ +|++||
T Consensus 5 ~G~~aP~f~l~~~~~G~-~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~---------gv~~vv~Is 74 (167)
T 2wfc_A 5 EGDKLPAVTVFGATPND-KVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK---------GVDIIACMA 74 (167)
T ss_dssp TTCBCCCCEEESSSTTC-EEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT---------TCCEEEEEE
T ss_pred CCCcCCCcEeecCCCCc-EEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEEEEEe
Confidence 6889999998 68899 9999998 9999999886 999999999 999999999999876 89 999999
Q ss_pred cCCCHHHHHHHHhcCCCcc--cccCCchhHHHHHhCCCCcc-----------ceEEEECCCCcEEeccc
Q 015833 247 TDRDQTSFESYFGTMPWLA--LPFGDPTIKELTKYFDVQGI-----------PCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~--~p~~~d~~~~~~~~~~v~~~-----------P~~~lid~~G~i~~~~~ 302 (399)
+| +.+..+++.++.+ +. ||+..|.+.++++.||+... |++||| ++|+|++...
T Consensus 75 ~d-~~~~~~~~~~~~~-~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~ 140 (167)
T 2wfc_A 75 VN-DSFVMDAWGKAHG-ADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNV 140 (167)
T ss_dssp SS-CHHHHHHHHHHTT-CTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEE
T ss_pred CC-CHHHHHHHHHhcC-CCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEe
Confidence 98 5678888888877 45 99999999999999998754 999999 9999998843
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-20 Score=160.10 Aligned_cols=120 Identities=10% Similarity=0.088 Sum_probs=99.4
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 248 (399)
.+|..+|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ +++|++|++|
T Consensus 22 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~vs~d~~ 91 (183)
T 2obi_A 22 RCARSMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC---------GLRILAFPCNQF 91 (183)
T ss_dssp GGCCSGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred cccCcccceEEEcCCCC-EeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC---------CeEEEEEECCCC
Confidence 47889999999 99999 99999999999999999999999999999999999999876 7999999987
Q ss_pred -----CCHHHHHHHHhcCCCcccccCC--chhHH----HHHhC-------C-----CCccceEEEECCCCcEEeccc
Q 015833 249 -----RDQTSFESYFGTMPWLALPFGD--PTIKE----LTKYF-------D-----VQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 -----~~~~~~~~~~~~~~~~~~p~~~--d~~~~----~~~~~-------~-----v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+.+++++++++++ +.+|+.. |.+.. +.+.+ + ++.+|+++|||++|+++.+..
T Consensus 92 ~~~e~~~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~ 167 (183)
T 2obi_A 92 GKQEPGSNEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYG 167 (183)
T ss_dssp TTCCCSCHHHHHHHHHTTT-CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHcC-CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeC
Confidence 36788999998876 5677654 32222 22211 4 455799999999999998743
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-20 Score=157.30 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=102.0
Q ss_pred ccccccCCeEEec-CCCCEEeccccCCCEEEEEEecCCCcccHhh-HHHHHHHHHHHhcCCCcEEEEEEecC------CC
Q 015833 7 YVQQLRRRMTSTK-EIGEEVKVSDLEGKVTALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDFEVVFVSSD------ED 78 (399)
Q Consensus 7 ~~~~~~p~f~l~d-~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~ii~Vs~D------~~ 78 (399)
..|..+|+|++++ .+|+.+++++++||+++|+||++||++|+.+ +|.|+++++++++.+ +.+++|++| .+
T Consensus 4 ~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~ 81 (160)
T 3lor_A 4 LDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDVMT 81 (160)
T ss_dssp CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGSC
T ss_pred cCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC--cEEEEEeccccccccCC
Confidence 3689999999999 8999999999999999999999999999995 999999999998775 999999984 67
Q ss_pred hHHHHHhHhcCCCcccccCChHH----HHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 79 LNAFNNYRACMPWLAVPYSDLET----KKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~d~~~----~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+.++++.+++++......|... ...+.+.|++.++|+++|||+ +|+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 136 (160)
T 3lor_A 82 PEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADR---KGRIRQV 136 (160)
T ss_dssp HHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECT---TSBEEEE
T ss_pred HHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECC---CCcEEEE
Confidence 88999999977643211112221 013899999999999999999 9999875
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-21 Score=161.82 Aligned_cols=125 Identities=33% Similarity=0.643 Sum_probs=107.7
Q ss_pred ccCCeEEecCCCCEEeccc-cCCC-EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 11 LRRRMTSTKEIGEEVKVSD-LEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~-~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
.+|+|+|++.+|+++++++ ++|| +++|+||++||++|+.++|.|+++++++++.+.++.+++|++|.+.+.+.++.++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~ 82 (143)
T 2lus_A 3 FIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMME 82 (143)
Confidence 5799999999999999999 9999 9999999999999999999999999999654446999999999888888999887
Q ss_pred C--CCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhh
Q 015833 89 M--PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 139 (399)
Q Consensus 89 ~--~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~ 139 (399)
+ +|..+++ ..+....+++.|++.++|+++++++ +|+++...+...+.
T Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~ 131 (143)
T 2lus_A 83 SHGDWLAIPY-RSGPASNVTAKYGITGIPALVIVKK---DGTLISMNGRGEVQ 131 (143)
Confidence 6 4655655 2333478999999999999999999 99999887655544
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=150.42 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=101.2
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNA 81 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~---~~~~ 81 (399)
...+|..+|+|++++.+|+.+++++ +||+++|+||++||++|+.++|.|+++++++++.+ +.++.|++|. +.+.
T Consensus 8 ~~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~ 84 (145)
T 3erw_A 8 EEKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQV 84 (145)
T ss_dssp ----CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS--EEEEEEECGGGSSCHHH
T ss_pred cccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC--EEEEEEEccCCcCCHHH
Confidence 4467889999999999999999999 99999999999999999999999999999997654 9999999986 8889
Q ss_pred HHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++++.++.++....+.|. ...+.+.|++.++|+++++|+ +|+++..
T Consensus 85 ~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 130 (145)
T 3erw_A 85 VEDFIKANKLTFPIVLDS--KGELMKEYHIITIPTSFLLNE---KGEIEKT 130 (145)
T ss_dssp HHHHHHHTTCCSCEEECS--SSHHHHHTTCCEESEEEEECT---TCCEEEE
T ss_pred HHHHHHHcCCceeEEEcC--chhHHHhcCcCccCeEEEEcC---CCcEEEE
Confidence 999988776432212232 268899999999999999999 9999865
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=154.95 Aligned_cols=123 Identities=22% Similarity=0.254 Sum_probs=103.4
Q ss_pred ccccccC-CeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcCCCcEEEEEEecC--CChHHH
Q 015833 7 YVQQLRR-RMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--EDLNAF 82 (399)
Q Consensus 7 ~~~~~~p-~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D--~~~~~~ 82 (399)
.+|..+| +|+|+|.+|+++++++++||+++|+||++||+ +|+.+++.|+++++++++.+.++++++|++| .+.+.+
T Consensus 2 ~~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~ 81 (170)
T 3me7_A 2 SLGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDI 81 (170)
T ss_dssp CTTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHH
T ss_pred CCCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHH
Confidence 4688999 99999999999999999999999999999998 6999999999999999865567999999998 466788
Q ss_pred HHhHhcCC-----CcccccCChHHHHHHHhhcC---------CCCcCeEEEEcCCCCCCCeeec
Q 015833 83 NNYRACMP-----WLAVPYSDLETKKALNRKFD---------IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 83 ~~~~~~~~-----~~~~~~~d~~~~~~l~~~~~---------v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++|.++++ |..+...+.+....+++.|+ +.+.|+++|||+ +|+|+..
T Consensus 82 ~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~---~G~i~~~ 142 (170)
T 3me7_A 82 KRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP---ELQIKDY 142 (170)
T ss_dssp HHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECT---TSBEEEE
T ss_pred HHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECC---CCeEEEE
Confidence 88888765 33323235455578888876 456789999999 9999865
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=154.77 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=102.2
Q ss_pred cccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcCCCcEEEEEEecC---CCh
Q 015833 4 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD---EDL 79 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D---~~~ 79 (399)
..+.+|..+|+|+|+|.+|+.+++++++||+++|+||++||+ +|+.++|.|.++++++++.+.+++|++|++| .+.
T Consensus 5 ~~l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~ 84 (174)
T 1xzo_A 5 IKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP 84 (174)
T ss_dssp CCSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred CcCccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCH
Confidence 456789999999999999999999999999999999999999 9999999999999999987556999999998 467
Q ss_pred HHHHHhHhcCCCcc-----cccCChHHHHHHHh------------hcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 80 NAFNNYRACMPWLA-----VPYSDLETKKALNR------------KFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 80 ~~~~~~~~~~~~~~-----~~~~d~~~~~~l~~------------~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++++.++++... +...+......+.. .|++.++|+++|||+ +|+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~---~G~i~~~ 151 (174)
T 1xzo_A 85 KQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP---DGKVLKD 151 (174)
T ss_dssp HHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT---TSEEEEE
T ss_pred HHHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC---CCeEEEE
Confidence 88889988776422 22112221122221 256788999999999 9999865
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-19 Score=156.89 Aligned_cols=125 Identities=19% Similarity=0.293 Sum_probs=100.4
Q ss_pred HhhhcCC--CCccc-CCCCCceeeccccCCcEEEEEEecCCChh-hhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 171 NLLTNHD--RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 171 ~~~g~~~--p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
..+|.++ |+|++ +.+|+ .+++++++||++||+||++||++ |..++|.|.++++++.++. +.+++|++|+
T Consensus 13 ~~~g~~~~~p~f~l~d~~G~-~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~------~~~v~vv~Is 85 (200)
T 2b7k_A 13 RGYGKPSLGGPFHLEDMYGN-EFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY------GITLQPLFIT 85 (200)
T ss_dssp ---CCCCCCCCCEEEETTSC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH------CCCCEEEEEE
T ss_pred hccCCCCcCCCEEEEcCCCC-EEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhh------CCceEEEEEE
Confidence 4567776 99999 99999 99999999999999999999997 9999999999999997531 2379999999
Q ss_pred cCC---CHHHHHHHHhcCC--CcccccCCchhHHHHHhCCCC-ccc---------------eEEEECCCCcEEeccc
Q 015833 247 TDR---DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ-GIP---------------CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 247 ~d~---~~~~~~~~~~~~~--~~~~p~~~d~~~~~~~~~~v~-~~P---------------~~~lid~~G~i~~~~~ 302 (399)
+|. +.+.+++|++.++ |..++...|....+++.|||. +.| +++|||++|+|+.+..
T Consensus 86 ~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~ 162 (200)
T 2b7k_A 86 CDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALG 162 (200)
T ss_dssp SCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeC
Confidence 995 6788899988765 444444456678899999997 444 7899999999998754
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=158.14 Aligned_cols=119 Identities=9% Similarity=0.064 Sum_probs=97.5
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 249 (399)
+|..+|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++ +++|++|++|.
T Consensus 25 ~g~~~p~f~l~~~~G~-~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~is~d~~~ 94 (185)
T 2gs3_A 25 CARSMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC---------GLRILAFPCNQFG 94 (185)
T ss_dssp GCCCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCTTT
T ss_pred CCCCcCCceeEcCCCC-EeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC---------CeEEEEEECcccC
Confidence 6889999999 99999 99999999999999999999999999999999999999876 79999999873
Q ss_pred -----CHHHHHHHHhcCCCcccccCC--chhHH----HHHhC-------C-----CCccceEEEECCCCcEEeccc
Q 015833 250 -----DQTSFESYFGTMPWLALPFGD--PTIKE----LTKYF-------D-----VQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~p~~~--d~~~~----~~~~~-------~-----v~~~P~~~lid~~G~i~~~~~ 302 (399)
+.+++++++++.+ +.+|+.. |.... +.+.+ + +..+|++||||++|+++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~ 169 (185)
T 2gs3_A 95 KQEPGSNEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYG 169 (185)
T ss_dssp TCCCSCHHHHHHHHHHTT-CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHcC-CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeC
Confidence 4677888888776 5577654 32221 22211 4 344799999999999998853
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.2e-19 Score=150.03 Aligned_cols=119 Identities=19% Similarity=0.273 Sum_probs=101.4
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcc-cHhhHHHHHHHHHHHhcC--CCcEEEEEEecCC---ChHHHHH
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN--GSDFEVVFVSSDE---DLNAFNN 84 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~ii~Vs~D~---~~~~~~~ 84 (399)
.+|+|+++|.+|+++++++++||+++|+||++||++ |+.++|.|+++++++++. ..++++++|++|. +.+.+++
T Consensus 2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~ 81 (164)
T 2ggt_A 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN 81 (164)
T ss_dssp CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence 589999999999999999999999999999999998 999999999999999862 1249999999986 3677888
Q ss_pred hHhcCC--CcccccCChHHHHHHHhhcCCCCcC---------------eEEEEcCCCCCCCeeecc
Q 015833 85 YRACMP--WLAVPYSDLETKKALNRKFDIEGIP---------------CLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P---------------~~~lid~~~~~G~i~~~~ 133 (399)
|.++++ |..+.. +.+....+.+.|++..+| +++|||+ +|+++...
T Consensus 82 ~~~~~~~~~~~l~~-~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~---~G~i~~~~ 143 (164)
T 2ggt_A 82 YVKEFSPKLVGLTG-TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP---DGEFLDYF 143 (164)
T ss_dssp HHHTTCSSCEEEEC-CHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT---TSCEEEEE
T ss_pred HHHHcCCCeEEEeC-CHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC---CCeEEEEe
Confidence 888765 444432 445557899999999999 8999999 99998763
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=158.55 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=93.1
Q ss_pred hcCCCCccc-CCC-CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 015833 174 TNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 249 (399)
Q Consensus 174 g~~~p~f~l-~~~-g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 249 (399)
+..+|+|++ +.+ |+ .+++++++||+|||+|||+||++|+ ++|.|++++++|+++ +++||+|++|.
T Consensus 32 ~~~~pdF~l~d~~~G~-~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~---------g~~Vlgvs~d~f~ 100 (215)
T 2i3y_A 32 KGTIYDYEAIALNKNE-YVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPY---------GLVVLGFPCNQFG 100 (215)
T ss_dssp CCCGGGCEEEBSSSSC-EEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG---------TEEEEEEECCCST
T ss_pred cCCcCCcEeeeCCCCC-EEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC---------CeEEEEEEccccC
Confidence 456899999 999 99 9999999999999999999999999 999999999999876 89999999762
Q ss_pred -----CHHHHHHHHh------cCCCcccccCCch--h----H----HHHHh-------CC--------------CCccce
Q 015833 250 -----DQTSFESYFG------TMPWLALPFGDPT--I----K----ELTKY-------FD--------------VQGIPC 287 (399)
Q Consensus 250 -----~~~~~~~~~~------~~~~~~~p~~~d~--~----~----~~~~~-------~~--------------v~~~P~ 287 (399)
+.+++++|++ +++ ++||+..|. + . .+... ++ |...|+
T Consensus 101 ~~e~~~~~~i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npt 179 (215)
T 2i3y_A 101 KQEPGDNKEILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFE 179 (215)
T ss_dssp TCCCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTC
T ss_pred cCCCCCHHHHHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCce
Confidence 4567888887 555 678876431 1 1 12211 11 233489
Q ss_pred EEEECCCCcEEeccc
Q 015833 288 LVIIGPEGKTVTKQG 302 (399)
Q Consensus 288 ~~lid~~G~i~~~~~ 302 (399)
+||||++|+|+.+..
T Consensus 180 tfLID~~G~vv~~~~ 194 (215)
T 2i3y_A 180 KFLVGPDGIPVMRWS 194 (215)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEECCCCeEEEEeC
Confidence 999999999998853
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-19 Score=152.67 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=99.5
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNA 81 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~---~~~~ 81 (399)
.+++..+|+|+|+|.+|++++|++++||+++|+||++||+ +|...++.|.++++.+++.+.++++|+||+|. +.+.
T Consensus 6 ~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~ 85 (170)
T 4hde_A 6 KPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPEN 85 (170)
T ss_dssp SCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHH
T ss_pred cCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHH
Confidence 3568899999999999999999999999999999999998 89999999999999999877789999999984 4577
Q ss_pred HHHhHhcCC-----CcccccCChHHHHHHH-hh----------cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 82 FNNYRACMP-----WLAVPYSDLETKKALN-RK----------FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 82 ~~~~~~~~~-----~~~~~~~d~~~~~~l~-~~----------~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+++|.++++ |..+...+......+. .. +.+.+.|+++|||+ +|+++..
T Consensus 86 l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~---~G~i~~~ 149 (170)
T 4hde_A 86 LKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQ---NGKVMKK 149 (170)
T ss_dssp HHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECT---TSCEEEE
T ss_pred HHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcC---CCeEEEE
Confidence 788887653 5444443332212222 22 34556789999999 9999854
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=155.45 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=100.8
Q ss_pred cccccccCCeEEecC--CCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcE------EEEEEecCC
Q 015833 6 WYVQQLRRRMTSTKE--IGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDF------EVVFVSSDE 77 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~--~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~------~ii~Vs~D~ 77 (399)
...|..+|+|++++. +|+.+++++++||++||+||++||++|+.++|.|+++++++++.+ + ++++|+.|.
T Consensus 31 ~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~v~v~~d~ 108 (183)
T 3lwa_A 31 EADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTVLGINVRD 108 (183)
T ss_dssp GGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEEEEEECSC
T ss_pred cccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEEEEEECCC
Confidence 345789999999999 999999999999999999999999999999999999999999876 6 999999998
Q ss_pred -ChHHHHHhHhcCCCcccccCChHHHHHHHhhc---CCCCcCeEEEEcCCCCCCCeeec
Q 015833 78 -DLNAFNNYRACMPWLAVPYSDLETKKALNRKF---DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~---~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.+.++++.+++++....+.|.. ..+.+.| ++.++|+++|||+ +|+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 162 (183)
T 3lwa_A 109 YSRDIAQDFVTDNGLDYPSIYDPP--FMTAASLGGVPASVIPTTIVLDK---QHRPAAV 162 (183)
T ss_dssp CCHHHHHHHHHHTTCCSCEEECTT--CGGGGGTTTCCTTCCSEEEEECT---TSCEEEE
T ss_pred CCHHHHHHHHHHcCCCccEEECCc--chHHHHhccCCCCCCCeEEEECC---CCcEEEE
Confidence 78999999987663222222332 4455555 6899999999999 9999865
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=155.38 Aligned_cols=116 Identities=21% Similarity=0.332 Sum_probs=103.0
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC---------
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--------- 76 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D--------- 76 (399)
..+|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++ + +.++.|++|
T Consensus 11 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~--v~vv~i~~d~~~~~~~~~ 86 (165)
T 3ha9_A 11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--E--ISVIAIDFWTAEALKALG 86 (165)
T ss_dssp HHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEECCSHHHHHHHT
T ss_pred ccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--C--cEEEEEEecccccccccc
Confidence 457889999999999999999999999999999999999999999999999999987 3 999999999
Q ss_pred ---------CChHHHHHhHhcCCC-cccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeee
Q 015833 77 ---------EDLNAFNNYRACMPW-LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 77 ---------~~~~~~~~~~~~~~~-~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~ 131 (399)
.+.+.++++.+++++ ....+.| ...+.+.|+|.++|+++|||+ +|+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~v~~~P~~~lid~---~G~i~~ 145 (165)
T 3ha9_A 87 LNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD---DGSLVEKFNVRSIDYIVIMDK---SSNVLY 145 (165)
T ss_dssp CCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC---CSHHHHHTTCCSSSEEEEEET---TCCEEE
T ss_pred cccccCCCCCCHHHHHHHHHHcCCCCeeEEeC---hHHHHHHhCCCCceEEEEEcC---CCcEEE
Confidence 788999999997664 2222224 378999999999999999999 999987
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=156.31 Aligned_cols=123 Identities=14% Similarity=0.126 Sum_probs=105.2
Q ss_pred HHHhhhcCCCCccc--CCCCCceeeccc-cCCcEEEEEE-ecCCChhhh-hhHHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 015833 169 LINLLTNHDRGYLL--GHPPDEKVPVSS-LVGKTVGLYF-SARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFEVV 243 (399)
Q Consensus 169 ~~~~~g~~~p~f~l--~~~g~~~~~l~~-~~gk~vll~F-~a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv 243 (399)
....+|.++|+|++ +.+|+ .+++++ ++||+|+|+| |++|||+|. +++|.|.+++++|+++ +++||
T Consensus 13 ~~~~vG~~aPdf~l~~~~~g~-~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~---------gv~vv 82 (173)
T 3mng_A 13 APIKVGDAIPAVEVFEGEPGN-KVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK---------GVQVV 82 (173)
T ss_dssp CCCCTTCBCCCCEEECSSTTC-EEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEE
T ss_pred CCCCCCCCCCCeEeeeCCCCC-EEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC---------CCEEE
Confidence 34568999999999 68899 999999 5999766655 599999999 5999999999999876 89999
Q ss_pred E-EecCCCHHHHHHHHhcCCCc-ccccCCchhHHHHHhCCCC-------------ccceEEEECCCCcEEecccc
Q 015833 244 F-VSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-------------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 244 ~-is~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~~~~~~~v~-------------~~P~~~lid~~G~i~~~~~~ 303 (399)
+ ||.| +....+++.++.+.. .||+..|.+.++++.||+. ..|++|||| +|+|++....
T Consensus 83 ~~iS~D-~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~ 155 (173)
T 3mng_A 83 ACLSVN-DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVE 155 (173)
T ss_dssp EEEESS-CHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEEC
T ss_pred EEEcCC-CHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEe
Confidence 7 9998 567788888887743 4999999999999999985 459999999 9999988644
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=153.95 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=109.4
Q ss_pred hhcCCC-Cccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 015833 173 LTNHDR-GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 248 (399)
Q Consensus 173 ~g~~~p-~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 248 (399)
+|.++| +|++ +.+|+ .+++++++||+++|+||++||+ .|..+++.|.++++++... +.++++|+|++|
T Consensus 3 ~G~~~P~~f~l~d~~G~-~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~-------~~~~~vv~is~d~ 74 (170)
T 3me7_A 3 LGTYVPGDITLVDSYGN-EFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTP-------GKDFWVITFTFDP 74 (170)
T ss_dssp TTCBCCTTCEEEETTCC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCB-------TTTBEEEEEECCT
T ss_pred CCCcCCCCeEEEcCCcC-EEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhc-------CCceEEEEEECCC
Confidence 688999 9999 99999 9999999999999999999997 6999999999999999643 347999999998
Q ss_pred -CCHHHHHHHHhcCCCcccc-----c--CCchhHHHHHhCCC---------CccceEEEECCCCcEEecccchhhhhhcc
Q 015833 249 -RDQTSFESYFGTMPWLALP-----F--GDPTIKELTKYFDV---------QGIPCLVIIGPEGKTVTKQGRNLINLYQE 311 (399)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~p-----~--~~d~~~~~~~~~~v---------~~~P~~~lid~~G~i~~~~~~~~~~~~g~ 311 (399)
.+.+.+++|.++++ +.++ + ..+....+++.||+ ...|+++|||++|+|+.+. +|.
T Consensus 75 ~d~~~~~~~~~~~~~-~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~-------~g~ 146 (170)
T 3me7_A 75 KDTLEDIKRFQKEYG-IDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYI-------YGV 146 (170)
T ss_dssp TCCHHHHHHHHHHTT-CCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEE-------ESS
T ss_pred CCCHHHHHHHHHHcC-CCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEE-------eCC
Confidence 36778889888766 2222 2 12466788998774 4568999999999999763 222
Q ss_pred cCCCCChHHHHHHHHHHHHHhc
Q 015833 312 NAYPFTEAKLEFLEKQMEEEAK 333 (399)
Q Consensus 312 ~~~p~~~~~~~~l~~~~~~~~~ 333 (399)
. .. .+++.+.|+++..
T Consensus 147 ~---~~---~~~i~~~l~~~~~ 162 (170)
T 3me7_A 147 N---YN---YLEFVNALRLARG 162 (170)
T ss_dssp S---CC---HHHHHHHHHHHTT
T ss_pred C---CC---HHHHHHHHHHhhc
Confidence 1 11 4666666766544
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=156.30 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=100.9
Q ss_pred hhhcCCCCccc-CC--CCCceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 172 LLTNHDRGYLL-GH--PPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 172 ~~g~~~p~f~l-~~--~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+|..+|+|++ +. +|+ .++++++ +||+++|+||++||++|+.++|.|.+++++ ++.+++|++
T Consensus 23 ~~G~~~P~f~l~~~~~~g~-~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------------~v~vv~v~~ 88 (168)
T 2b1k_A 23 LIGKPVPKFRLESLDNPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-------------GIRVVGMNY 88 (168)
T ss_dssp TTTSBCCCCEEEESSSTTC-EEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------------TCCEEEEEE
T ss_pred ccCCcCCCeEeecccCCCc-EeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-------------CCEEEEEEC
Confidence 57999999999 87 898 9999885 899999999999999999999999887754 378999999
Q ss_pred CCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 248 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
|.+.+.+++++++++ +.+| +..|....+++.|++.++|+++|||++|+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 142 (168)
T 2b1k_A 89 KDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 142 (168)
T ss_dssp SCCHHHHHHHHHHHC-CCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEE
T ss_pred CCChHHHHHHHHHcC-CCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEE
Confidence 989999999998776 4455 3467778999999999999999999999999774
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=180.61 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=58.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+|||+||++|+.+.|.+.++++.+++. ++.++.|+.+.. ..++++|+
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~--~v~~~~vd~~~~------------------------~~l~~~~~ 83 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTEN------------------------QDLCMEHN 83 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC--CeEEEEEECCCC------------------------HHHHHhcC
Confidence 5899999999999999999999999999999765 388888876533 78999999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++..
T Consensus 84 v~~~Pt~~~~~~ 95 (504)
T 2b5e_A 84 IPGFPSLKIFKN 95 (504)
T ss_dssp CCSSSEEEEEET
T ss_pred CCcCCEEEEEeC
Confidence 999999999973
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=152.56 Aligned_cols=118 Identities=15% Similarity=0.226 Sum_probs=99.3
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
...+|..+|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +.++.|+.|.. +.+
T Consensus 14 ~~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~---~~~ 88 (158)
T 3hdc_A 14 LVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKR---FPE 88 (158)
T ss_dssp CCCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTS--EEEEEEECSSS---CCG
T ss_pred ccCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCC--eEEEEEeCCHH---HHH
Confidence 4567889999999999999999999999999999999999999999999999999998654 99999999873 445
Q ss_pred hHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 85 YRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 85 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++.++....+.|. ...+.+.|++.++|+++|+|+ +|+++..
T Consensus 89 ~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 131 (158)
T 3hdc_A 89 KYRRAPVSFNFLSDA--TGQVQQRYGANRLPDTFIVDR---KGIIRQR 131 (158)
T ss_dssp GGGGCCCSCEEEECT--TSHHHHHTTCCSSSEEEEECT---TSBEEEE
T ss_pred HHHHcCCCceEEECc--hHHHHHHhCCCCcceEEEEcC---CCCEEEE
Confidence 566555322222233 268999999999999999999 9999865
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.5e-19 Score=170.13 Aligned_cols=192 Identities=15% Similarity=0.216 Sum_probs=122.9
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
.++++|.|+++||++|+.+.|.|.++++++++. +.++.|+.|.. ....+++.|+|
T Consensus 135 ~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~----------------------~~~~~~~~fgi 189 (361)
T 3uem_A 135 IKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHT----------------------DNQRILEFFGL 189 (361)
T ss_dssp CCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSG----------------------GGHHHHHHTTC
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChH----------------------HHHHHHHHcCC
Confidence 357899999999999999999999999999765 66776654321 12788999999
Q ss_pred CC--cCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCc----cc-CC
Q 015833 112 EG--IPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGY----LL-GH 184 (399)
Q Consensus 112 ~~--~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f----~l-~~ 184 (399)
.. +|++++++. ++..... .......+.+.+..+............ ......|.- .+ ..
T Consensus 190 ~~~~~P~~~~~~~---~~~~~ky---------~~~~~~~~~~~l~~fi~~~l~g~~~~~---~~s~~~p~~~~~~~v~~l 254 (361)
T 3uem_A 190 KKEECPAVRLITL---EEEMTKY---------KPESEELTAERITEFCHRFLEGKIKPH---LMSQELPEDWDKQPVKVL 254 (361)
T ss_dssp CTTTCSEEEEEEC---C--CCEE---------CCSSCCCCHHHHHHHHHHHHTTCSCCC---CBCCCCCTTTTTSSSEEE
T ss_pred CccCCccEEEEEc---CCccccc---------CCCccccCHHHHHHHHHHHhcCCCccc---ccCCCCCcccccCCcEEe
Confidence 88 999999985 3322111 111123444544444332221110000 001111211 11 23
Q ss_pred CCCceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 015833 185 PPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 263 (399)
Q Consensus 185 ~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 263 (399)
+++ .+....+ .+++++|+|||+||++|+.+.|.|.++++++++. .++.++.|..+.+
T Consensus 255 ~~~-~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~--------~~v~~~~vd~~~~------------- 312 (361)
T 3uem_A 255 VGK-NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH--------ENIVIAKMDSTAN------------- 312 (361)
T ss_dssp CTT-THHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTC--------SSEEEEEEETTTC-------------
T ss_pred ecC-chhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccC--------CcEEEEEEECCcc-------------
Confidence 333 3322222 5799999999999999999999999999998753 2455655555433
Q ss_pred cccccCCchhHHHHHhCCCCccceEEEECCC-CcE
Q 015833 264 LALPFGDPTIKELTKYFDVQGIPCLVIIGPE-GKT 297 (399)
Q Consensus 264 ~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i 297 (399)
. ++.|+|.++||+++++++ |+.
T Consensus 313 ----------~--~~~~~v~~~Pt~~~~~~~~~~~ 335 (361)
T 3uem_A 313 ----------E--VEAVKVHSFPTLKFFPASADRT 335 (361)
T ss_dssp ----------B--CSSCCCCSSSEEEEECSSSSCC
T ss_pred ----------c--hhhcCCcccCeEEEEECCCCcc
Confidence 1 567899999999999655 443
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.7e-20 Score=160.29 Aligned_cols=119 Identities=12% Similarity=0.131 Sum_probs=102.1
Q ss_pred hhhcCCCCccc-CC--CC-Cceeeccc-cCCcEE-EEEEecCCChhhhh-hHHHHHHHHHHHHhhhhhcCCCCCCEE-EE
Q 015833 172 LLTNHDRGYLL-GH--PP-DEKVPVSS-LVGKTV-GLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFE-VV 243 (399)
Q Consensus 172 ~~g~~~p~f~l-~~--~g-~~~~~l~~-~~gk~v-ll~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~-vv 243 (399)
.+|.++|+|++ +. +| + .+++++ ++||++ |++||++|||+|.. ++|.|.+++++|+++ +++ |+
T Consensus 27 ~vG~~aPdf~l~~~~~~G~~-~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~---------gv~~vv 96 (184)
T 3uma_A 27 AVGDKLPNATFKEKTADGPV-EVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR---------GVDDIA 96 (184)
T ss_dssp CTTCBCCCCEEEEEETTEEE-EEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEEE
T ss_pred CCCCCCCCcEeecccCCCce-EEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc---------CCCEEE
Confidence 47999999999 76 88 8 999999 899865 55566999999999 799999999999876 788 99
Q ss_pred EEecCCCHHHHHHHHhcCCCc-ccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEeccc
Q 015833 244 FVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 244 ~is~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 302 (399)
+||+| +....+++.++.+.. .||+..|.+..+++.||+. ..|++|||| +|+|++...
T Consensus 97 ~Is~d-~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~ 165 (184)
T 3uma_A 97 VVAVN-DLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNI 165 (184)
T ss_dssp EEESS-CHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEE
T ss_pred EEECC-CHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEE
Confidence 99998 567788888877733 3999999999999999985 358899996 999998853
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=158.86 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=104.0
Q ss_pred HHHhhhcCCCCccc----CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 015833 169 LINLLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 243 (399)
Q Consensus 169 ~~~~~g~~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv 243 (399)
+...+|+++|||++ +.+++ +++|++++||+|+|+|| +.||+.|..+++.+++.+++|++. +++|+
T Consensus 21 M~~~VG~~APdF~l~a~~d~~~~-~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~---------g~~vi 90 (216)
T 3sbc_A 21 MVAQVQKQAPTFKKTAVVDGVFD-EVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ---------GAQVL 90 (216)
T ss_dssp -CCCTTSBCCCCCEEEEETTEEE-EECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT---------TEEEE
T ss_pred chhhcCCcCCCCCCcceECCCCc-EEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC---------CceEE
Confidence 33468999999986 55667 89999999999999999 789999999999999999999977 89999
Q ss_pred EEecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccc
Q 015833 244 FVSTDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 244 ~is~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 303 (399)
+||+| +....+++.+.. ..++||+..|.+.++++.||+- ..+.+||||++|+|++....
T Consensus 91 giS~D-s~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~ 161 (216)
T 3sbc_A 91 FASTD-SEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITIN 161 (216)
T ss_dssp EEESS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred EeecC-chhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEc
Confidence 99999 444444554432 2478999999999999999982 46799999999999877543
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=158.95 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=103.2
Q ss_pred CCccccccccccCCeEEecC--CC--CEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 1 MSLSQWYVQQLRRRMTSTKE--IG--EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 1 ~~~~~~~~~~~~p~f~l~d~--~G--~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
|+.....+|..+|+|++++. +| ++++|++++||+++|+|| ++||++|+.++|.|+++++++++.+ +++++|+.
T Consensus 1 m~~~~~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~Is~ 78 (202)
T 1uul_A 1 MSCGEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSM 78 (202)
T ss_dssp ---CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEES
T ss_pred CCcccccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 77788889999999999998 78 899999999999999999 9999999999999999999998765 99999999
Q ss_pred CCChHHHHHhHhcC-------CCcccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 76 DEDLNAFNNYRACM-------PWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 76 D~~~~~~~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
|. .+...++.+++ +. .+| +.|. ...+++.|++. ++|+++|||+ +|+++...
T Consensus 79 D~-~~~~~~~~~~~~~~~~~~~~-~~p~l~D~--~~~~~~~ygv~~~~~g~~~P~~~lid~---~G~i~~~~ 143 (202)
T 1uul_A 79 DS-EYSHLAWTSIERKRGGLGQM-NIPILADK--TKCIMKSYGVLKEEDGVAYRGLFIIDP---KQNLRQIT 143 (202)
T ss_dssp SC-HHHHHHHHHSCGGGTCCCSC-SSCEEECT--TCHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred CC-HHHHHHHHHHHHhhCCCCCC-ceeEEECC--chHHHHHcCCccCCCCceeeEEEEECC---CCEEEEEE
Confidence 84 45677777755 21 112 1232 37899999999 9999999999 99998764
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=155.96 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=102.8
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------C
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------E 77 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~ 77 (399)
...+|..+|+|+++|.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++. +++++|+.| .
T Consensus 6 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d 82 (188)
T 2cvb_A 6 ELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPED 82 (188)
T ss_dssp CCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGG
T ss_pred cCCCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCcccccccc
Confidence 456789999999999999999999999999999999999999999999999999998754 999999996 4
Q ss_pred ChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 78 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.+.+.++.+++++....+.|. ...+.+.|++.++|+++|||+ +|+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 132 (188)
T 2cvb_A 83 APEKMAAFAEEHGIFFPYLLDE--TQEVAKAYRALRTPEVFLFDE---RRLLRYH 132 (188)
T ss_dssp SHHHHHHHHHHHTCCSCEEECS--SSHHHHHTTCCEESEEEEECT---TCBEEEE
T ss_pred CHHHHHHHHHHhCCCceEEECC--cchHHHHcCCCCCCeEEEECC---CCcEEEE
Confidence 6678888888766422112232 267899999999999999999 9999877
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=156.60 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=101.8
Q ss_pred hhhcCCCCccc-CC----CC-----Cceeecccc-CCc-EEEEEEecCCChhhhhh-HHHHHHHHHHHHhhhhhcCCCCC
Q 015833 172 LLTNHDRGYLL-GH----PP-----DEKVPVSSL-VGK-TVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALE 238 (399)
Q Consensus 172 ~~g~~~p~f~l-~~----~g-----~~~~~l~~~-~gk-~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~ 238 (399)
.+|.++|+|++ +. +| + .++++++ +|| +||++||++|||+|..+ +|.|.+++++|+++
T Consensus 8 ~~g~~aP~f~l~~~~~~~~G~~~~~~-~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~--------- 77 (171)
T 2pwj_A 8 DILSAASNVSLQKARTWDEGVESKFS-TTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK--------- 77 (171)
T ss_dssp --CCCSSSBCCCSCEECCCSSCTTCC-CEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT---------
T ss_pred cccCcCCCeEEecccccccCCccCcc-eEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC---------
Confidence 46779999999 76 47 8 9999996 996 67778999999999999 99999999999876
Q ss_pred CEE-EEEEecCCCHHHHHHHHhcCCC-cccccCCchhHHHHHhCCCCc-----------cceEEEECCCCcEEeccc
Q 015833 239 DFE-VVFVSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQG-----------IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 239 ~~~-vv~is~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~ 302 (399)
+++ |++||+| +.+..+++.++++. .+||+..|.+..+++.||+.. .|+.++|| +|+|++...
T Consensus 78 g~~~vv~Is~d-~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~ 152 (171)
T 2pwj_A 78 GVDSVICVAIN-DPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNV 152 (171)
T ss_dssp TCSEEEEEESS-CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred CCCEEEEEeCC-CHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEe
Confidence 789 9999998 56778889888886 579999999999999999853 56788888 999998853
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=155.27 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=101.0
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~-~~~~~~ 84 (399)
...|..+|+|+++|.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++|.+ .+.+.+
T Consensus 34 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~ 111 (186)
T 1jfu_A 34 ASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKT 111 (186)
T ss_dssp CCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHH
T ss_pred ccCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC--cEEEEEECCCCCHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999998654 99999999865 567788
Q ss_pred hHhcCCCcccc-cCChHHHHHHHhhcCCC----CcCeEEEEcCCCCCCCeeec
Q 015833 85 YRACMPWLAVP-YSDLETKKALNRKFDIE----GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 85 ~~~~~~~~~~~-~~d~~~~~~l~~~~~v~----~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++++...++ +.|.. ..+.+.|++. ++|+++|||+ +|+++..
T Consensus 112 ~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~P~~~lid~---~G~i~~~ 159 (186)
T 1jfu_A 112 FLKEANLTRLGYFNDQK--AKVFQDLKAIGRALGMPTSVLVDP---QGCEIAT 159 (186)
T ss_dssp HHHHTTCCTTCCEECTT--CHHHHHHHTTTCCSSSSEEEEECT---TSBEEEE
T ss_pred HHHHcCCCCCceEECCc--chHHHHhccccccCCCCEEEEECC---CCCEEEE
Confidence 88877642222 22332 5677788875 8999999999 9999866
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=151.98 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=95.1
Q ss_pred HHhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 170 INLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 170 ~~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
...+|.++|+|+| +.+|+ .+++++++||+|||+||++||+ +|...++.|.++++.+++. +.++.+|+||+
T Consensus 5 ~~P~~~~~PdF~L~d~~G~-~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~-------~~~v~~v~isv 76 (170)
T 4hde_A 5 RKPLNWDLETFQFTNQDGK-PFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEE-------KLDVQFVSFSV 76 (170)
T ss_dssp CSCCCBCCCCCEEECTTSC-EEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHT-------TCCCEEEEEES
T ss_pred ccCCCCcCCCcEEECCCCC-EEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcc-------cccceeEeeec
Confidence 3457889999999 99999 9999999999999999999997 8999999999999999865 55799999999
Q ss_pred CC---CHHHHHHHHhcCC-----CcccccCCc-h-hHHHHHhC----------CCCccceEEEECCCCcEEecc
Q 015833 248 DR---DQTSFESYFGTMP-----WLALPFGDP-T-IKELTKYF----------DVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 248 d~---~~~~~~~~~~~~~-----~~~~p~~~d-~-~~~~~~~~----------~v~~~P~~~lid~~G~i~~~~ 301 (399)
|. +++.+++|.+.++ |..+..... . .......| .+...|+++|||++|+|+.+.
T Consensus 77 Dp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~ 150 (170)
T 4hde_A 77 DPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKY 150 (170)
T ss_dssp CTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEE
T ss_pred CcccccHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEE
Confidence 84 5678888888654 211111111 1 11122223 334568999999999999764
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=159.87 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=103.0
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCc-EEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|..+|+|++ +.+| .+++++++|+ +++|+|| ++||++|..+++.|.+++++|+++ +++||+||+|
T Consensus 4 ~iG~~aPdF~l~~~~G--~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~---------~v~vigIS~D 72 (233)
T 2v2g_A 4 TLGEVFPNFEADSTIG--KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR---------GVKLIALSCD 72 (233)
T ss_dssp CTTCBCCCCEEEETTC--CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEESS
T ss_pred CCCCCCCCcEEecCCC--CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc---------CCEEEEEcCC
Confidence 47899999999 8887 6999999997 9999998 899999999999999999999876 8999999999
Q ss_pred CCHHHHHHHHh------cCC-CcccccCCchhHHHHHhCCCC------------ccceEEEECCCCcEEeccc
Q 015833 249 RDQTSFESYFG------TMP-WLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 ~~~~~~~~~~~------~~~-~~~~p~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~ 302 (399)
. .+..+++.+ ..+ .++||+..|.+.++++.||+. .+|++||||++|+|+....
T Consensus 73 ~-~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~ 144 (233)
T 2v2g_A 73 N-VADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSIL 144 (233)
T ss_dssp C-HHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEE
T ss_pred C-HHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEe
Confidence 4 455555555 342 478999999999999999985 5899999999999998853
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-19 Score=148.82 Aligned_cols=119 Identities=19% Similarity=0.261 Sum_probs=101.1
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-CChHHHHHh
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNNY 85 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-~~~~~~~~~ 85 (399)
.+|..+|+|+++|.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +.+++|+.| .+.+.++++
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~ 80 (153)
T 2l5o_A 3 LDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQY 80 (153)
T ss_dssp -CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT--EEEEEEECTTSCHHHHHHH
T ss_pred CCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--eEEEEEecCCCCHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999998765 999999986 456788888
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+++++......+. ...+.+.|++.++|+++++|+ +|+++..
T Consensus 81 ~~~~~~~~~~~~d~--~~~~~~~~~i~~~P~~~lid~---~G~i~~~ 122 (153)
T 2l5o_A 81 VKDYGLPFTVMYDA--DKAVGQAFGTQVYPTSVLIGK---KGEILKT 122 (153)
T ss_dssp HHHTTCCSEEEECS--SCHHHHHHTCCSSSEEEEECS---SSCCCEE
T ss_pred HHHcCCCceEEcCc--hHHHHHHcCCCccCeEEEECC---CCcEEEE
Confidence 88776432111132 267899999999999999999 9998754
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=185.61 Aligned_cols=177 Identities=12% Similarity=0.122 Sum_probs=124.5
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
++.++|.||++||++|+.+.|.+.++++.+++. +.++.|+.+. ...+++.|+|
T Consensus 563 ~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~---v~~~~vd~~~------------------------~~~l~~~~~v 615 (780)
T 3apo_A 563 DEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSVDCGQ------------------------YHSFCTQENV 615 (780)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTT------------------------THHHHHHTTC
T ss_pred CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC---eEEEEEECcc------------------------hHHHHHHcCC
Confidence 568899999999999999999999999999863 7777775432 2678899999
Q ss_pred CCcCeEEEEcCCCCCCC----eeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCCCCC
Q 015833 112 EGIPCLVVLQPYDDKDD----ATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD 187 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~----i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~ 187 (399)
.++|+++++.. .+. .+... | ...+.+.+..+. . ...+......++.
T Consensus 616 ~~~Pti~~~~~---~~~~~~~~~~y~--------g---~~~~~~~l~~fi---~-------------~~~~~~v~~l~~~ 665 (780)
T 3apo_A 616 QRYPEIRFYPQ---KSSKAYQYHSYN--------G---WNRDAYSLRSWG---L-------------GFLPQASIDLTPQ 665 (780)
T ss_dssp CSSSEEEEECC---CSSSCCSCEECC--------C---SCCSHHHHHHHH---H-------------TTSCCCSEEECHH
T ss_pred CCCCeEEEEcC---CCcCccchhhcC--------C---CCCCHHHHHHHH---h-------------hhcccccccCCHH
Confidence 99999999985 332 11110 1 011222222211 1 1111111122222
Q ss_pred ceeec-cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccc
Q 015833 188 EKVPV-SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLAL 266 (399)
Q Consensus 188 ~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 266 (399)
.+.- -.-.+++++|+|||+||++|+.+.|.+.++++++++ ++.++.|++|..
T Consensus 666 -~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~----------~~~~~~vd~~~~---------------- 718 (780)
T 3apo_A 666 -TFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG----------KVRAGKVDCQAY---------------- 718 (780)
T ss_dssp -HHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------TCEEEEEETTTC----------------
T ss_pred -HHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CceEEEEECCCC----------------
Confidence 2211 112368999999999999999999999999999864 478888887755
Q ss_pred ccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 267 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 267 p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+++.|+|.++|+++++ ++|+++.+
T Consensus 719 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 744 (780)
T 3apo_A 719 -------PQTCQKAGIKAYPSVKLY-QYERAKKS 744 (780)
T ss_dssp -------HHHHHHTTCCSSSEEEEE-EEETTTTE
T ss_pred -------HHHHHhcCCCcCCEEEEE-cCCCcccc
Confidence 678999999999999999 88887654
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=148.06 Aligned_cols=118 Identities=18% Similarity=0.237 Sum_probs=99.8
Q ss_pred cc-CCeEEecCCCCEEeccccCCCEEEEEEecCCCcc-cHhhHHHHHHHHHHHhcC--CCcEEEEEEecCC---ChHHHH
Q 015833 11 LR-RRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN--GSDFEVVFVSSDE---DLNAFN 83 (399)
Q Consensus 11 ~~-p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~ii~Vs~D~---~~~~~~ 83 (399)
.+ |+|+|+|.+|+++++++++||+++|+||++||++ |+.++|.|+++++++++. ..++++++|++|. +.+.++
T Consensus 4 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~ 83 (171)
T 2rli_A 4 TGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMA 83 (171)
T ss_dssp CCCSCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHH
T ss_pred CCCCCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHH
Confidence 46 9999999999999999999999999999999998 999999999999999752 1359999999984 577888
Q ss_pred HhHhcCC--CcccccCChHHHHHHHhhcCCCCcC---------------eEEEEcCCCCCCCeeec
Q 015833 84 NYRACMP--WLAVPYSDLETKKALNRKFDIEGIP---------------CLVVLQPYDDKDDATLH 132 (399)
Q Consensus 84 ~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P---------------~~~lid~~~~~G~i~~~ 132 (399)
++.++++ |..+.. +.+....+.+.|++..+| +++|||+ +|+++..
T Consensus 84 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~---~G~i~~~ 145 (171)
T 2rli_A 84 RYVQDFHPRLLGLTG-STKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP---DGLFTDY 145 (171)
T ss_dssp HHHHTTCTTCCEEEC-CHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT---TSCEEEE
T ss_pred HHHHHcCCCeEEEeC-CHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC---CCeEEEE
Confidence 8888765 444332 333446899999998888 8999999 9999876
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-19 Score=145.49 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=97.5
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEe-----cCCChHHHHHh
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS-----SDEDLNAFNNY 85 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs-----~D~~~~~~~~~ 85 (399)
.+|+|+++|.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++ ++.++.|+ .+.+.+.+.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~v~i~~~~~~~~~~~~~~~~~ 77 (138)
T 4evm_A 1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD---DYVVLTVVSPGHKGEQSEADFKNW 77 (138)
T ss_dssp CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT---TEEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC---CcEEEEEEcCCCCchhhHHHHHHH
Confidence 48999999999999999999999999999999999999999999999998433 49999994 45678899999
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++.++..++. ..+....+.+.|++.++|+++++|+ +|+++..
T Consensus 78 ~~~~~~~~~~~-~~d~~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 120 (138)
T 4evm_A 78 YKGLDYKNLPV-LVDPSGKLLETYGVRSYPTQAFIDK---EGKLVKT 120 (138)
T ss_dssp HTTCCCTTCCE-EECTTCHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred HhhcCCCCeeE-EECcchHHHHHcCcccCCeEEEECC---CCcEEEe
Confidence 99887633332 1122368999999999999999999 9999865
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-19 Score=159.67 Aligned_cols=121 Identities=14% Similarity=0.176 Sum_probs=100.2
Q ss_pred cccccccccCCeEEecC--CC--CEEecccc-CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC
Q 015833 4 SQWYVQQLRRRMTSTKE--IG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 77 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~--~G--~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~ 77 (399)
....+|..+|+|++++. +| ++++|+++ +||++||+|| ++||++|+.++|.|++++++|++.+ ++||+|+.|.
T Consensus 23 ~~l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv~Is~D~ 100 (221)
T 2c0d_A 23 KLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELLGISVDS 100 (221)
T ss_dssp ---CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEEEEESSC
T ss_pred ccCCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 34678999999999999 99 99999999 9999999999 9999999999999999999998776 9999999974
Q ss_pred ChHHHHHhHhcC-------CCcccc-cCChHHHHHHHhhcCC-----CCcCeEEEEcCCCCCCCeeecc
Q 015833 78 DLNAFNNYRACM-------PWLAVP-YSDLETKKALNRKFDI-----EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 78 ~~~~~~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v-----~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+..+++.+.. ++ .+| +.|. ...+++.|++ ..+|+++|||+ +|+|+...
T Consensus 101 -~~~~~~~~~~~~~~~g~~~~-~fp~l~D~--~~~~~~~ygv~~~~g~~~P~~~lID~---~G~I~~~~ 162 (221)
T 2c0d_A 101 -VYSHLAWKNMPIEKGGIGNV-EFTLVSDI--NKDISKNYNVLYDNSFALRGLFIIDK---NGCVRHQT 162 (221)
T ss_dssp -HHHHHHHHHSCGGGTCCCSC-SSEEEECT--TSHHHHHTTCEETTTEECEEEEEECT---TSBEEEEE
T ss_pred -HHHHHHHHHHhhhhcCccCC-ceEEEECC--chHHHHHcCCcccCCCccceEEEECC---CCeEEEEE
Confidence 45567777765 22 222 2243 3688999999 47999999999 99999774
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=157.77 Aligned_cols=122 Identities=10% Similarity=0.064 Sum_probs=93.5
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE------- 77 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~------- 77 (399)
...+|..+|+|+++|.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ ++|++|++|.
T Consensus 22 ~~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~ 99 (181)
T 2p31_A 22 SMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH--FNVLAFPCNQFGQQEPD 99 (181)
T ss_dssp -----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCS
T ss_pred cCCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC--EEEEEEECcCCCCCCCC
Confidence 3466889999999999999999999999999999999999999999999999999999876 9999999974
Q ss_pred ChHHHHHhHhc-CC--CcccccCChHH--HHHHHhhcCCCCcC-------eEEEEcCCCCCCCeeec
Q 015833 78 DLNAFNNYRAC-MP--WLAVPYSDLET--KKALNRKFDIEGIP-------CLVVLQPYDDKDDATLH 132 (399)
Q Consensus 78 ~~~~~~~~~~~-~~--~~~~~~~d~~~--~~~l~~~~~v~~~P-------~~~lid~~~~~G~i~~~ 132 (399)
+.+.++++.++ ++ |..+...|... ...+ -.|.+..+| +++|||+ +|+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~-~~~~~~~~P~~~~~~~~~~lid~---~G~i~~~ 162 (181)
T 2p31_A 100 SNKEIESFARRTYSVSFPMFSKIAVTGTGAHPA-FKYLAQTSGKEPTWNFWKYLVAP---DGKVVGA 162 (181)
T ss_dssp CHHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHH-HHHHHHHHSCCCCSTTCEEEECT---TSCEEEE
T ss_pred CHHHHHHHHHhhcCCCceeEeecccCCccchhh-hhhhhhcCCCccccceeEEEEcC---CCCEEEE
Confidence 67788888876 44 22221112110 0111 134566788 9999999 9999876
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-20 Score=158.22 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=101.8
Q ss_pred cccccccCCeEEecCCCCEEecccc--CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
..+|..||+|+|+|.+|++++|+++ +||+++|+|| ++|||+|+.++|.|+++++++++.| +++++||.| +.+..
T Consensus 5 l~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d-~~~~~ 81 (164)
T 4gqc_A 5 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCL 81 (164)
T ss_dssp CCTTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESS-CHHHH
T ss_pred ccCCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCC-CHHHH
Confidence 4679999999999999999999998 8999999988 9999999999999999999999886 999999997 45777
Q ss_pred HHhHhcCCCcccccCChHHHHHHHhhcCCC----------CcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPWLAVPYSDLETKKALNRKFDIE----------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~----------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++.++.+..+...+|.+ .++++.||+. ..|+++|||+ +|+|++..
T Consensus 82 ~~~~~~~~~~fp~l~D~~--~~v~~~ygv~~~~~~~~~~~~~p~tflID~---~G~I~~~~ 137 (164)
T 4gqc_A 82 KKFKDENRLAFNLLSDYN--REVIKLYNVYHEDLKGLKMVAKRAVFIVKP---DGTVAYKW 137 (164)
T ss_dssp HHHHHHTTCCSEEEECTT--SHHHHHTTCEEEEETTEEEEECCEEEEECT---TSBEEEEE
T ss_pred HHHHHhcCcccceeecCc--hHHHHHcCCcccccccCcCCeeeEEEEECC---CCEEEEEE
Confidence 888887664322233543 7899999983 4789999999 99998764
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=159.24 Aligned_cols=121 Identities=8% Similarity=0.089 Sum_probs=96.0
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~ 79 (399)
..+..+|+|+|+|.+|+++++++++||+|||+||++||++|+.++|.|+++++++++.+ ++||+|++| .+.
T Consensus 21 ~~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~e~~~~ 98 (187)
T 3dwv_A 21 SAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSNQFGGQEPGNE 98 (187)
T ss_dssp TTCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBCCCSSCSSSBT
T ss_pred cCCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECcccCCCCCCCH
Confidence 44678999999999999999999999999999999999999999999999999999876 999999998 456
Q ss_pred HHHHHhHhc-CC--CcccccCChH--HHHHH--------HhhcCCCCcC---eEEEEcCCCCCCCeeec
Q 015833 80 NAFNNYRAC-MP--WLAVPYSDLE--TKKAL--------NRKFDIEGIP---CLVVLQPYDDKDDATLH 132 (399)
Q Consensus 80 ~~~~~~~~~-~~--~~~~~~~d~~--~~~~l--------~~~~~v~~~P---~~~lid~~~~~G~i~~~ 132 (399)
+.+.++.++ ++ |..+...|.. ....+ ...|++..+| +++|||+ +|+++..
T Consensus 99 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~---~G~i~~~ 164 (187)
T 3dwv_A 99 EEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR---DGVPVER 164 (187)
T ss_dssp THHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT---TSCEEEE
T ss_pred HHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC---CCCEEEE
Confidence 788888883 24 3222100111 00111 1445777888 9999999 9999876
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=154.15 Aligned_cols=118 Identities=9% Similarity=0.072 Sum_probs=92.3
Q ss_pred hhcCCCCccc-CCC-CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 173 LTNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~-g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
....+|+|++ +.+ |+ .+++++++||+|||+|||+||++| .++|.|++++++|+++ +++||+|++|.
T Consensus 13 ~~~~~pdF~l~d~~~G~-~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~---------g~~vlgvs~d~f 81 (207)
T 2r37_A 13 ISGTIYEYGALTIDGEE-YIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPF---------GLVILGFPCNQF 81 (207)
T ss_dssp --CCGGGCEEEBTTSSC-EEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG---------TEEEEEEECCCB
T ss_pred ccCccCCeEeeeCCCCC-EEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC---------CEEEEEEECccc
Confidence 4557899999 999 99 999999999999999999999999 7999999999999876 89999999762
Q ss_pred ------CHHHHHHHHh------cCCCcccccCCch--h----H----HHHHhC-------C--------------CCccc
Q 015833 250 ------DQTSFESYFG------TMPWLALPFGDPT--I----K----ELTKYF-------D--------------VQGIP 286 (399)
Q Consensus 250 ------~~~~~~~~~~------~~~~~~~p~~~d~--~----~----~~~~~~-------~--------------v~~~P 286 (399)
+.+++++|++ +++ ++||+..|. + . .+.... + +...|
T Consensus 82 ~~~e~~~~~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ 160 (207)
T 2r37_A 82 GKQEPGENSEILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNF 160 (207)
T ss_dssp TTCCCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTT
T ss_pred CcCCCCCHHHHHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccc
Confidence 4567888888 555 678776431 1 1 122211 1 22338
Q ss_pred eEEEECCCCcEEeccc
Q 015833 287 CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 287 ~~~lid~~G~i~~~~~ 302 (399)
++||||++|+|+.+..
T Consensus 161 ttflID~~G~i~~~~~ 176 (207)
T 2r37_A 161 EKFLVGPDGIPIMRWH 176 (207)
T ss_dssp CEEEECTTSCEEEEEC
T ss_pred eEEEECCCCcEEEEEC
Confidence 9999999999998853
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=151.43 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=94.3
Q ss_pred ccccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC------
Q 015833 3 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD------ 76 (399)
Q Consensus 3 ~~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D------ 76 (399)
-....+|..+|+|+++|.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++|
T Consensus 3 ~~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~ 80 (170)
T 2p5q_A 3 TQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG--LEILAFPCNQFGEEE 80 (170)
T ss_dssp -------CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCC
T ss_pred CCcCCCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC--EEEEEEECCCCCCCC
Confidence 344567899999999999999999999999999999999999999999999999999998875 999999997
Q ss_pred -CChHHHHHhHh-cCC--CcccccCChHH--HHHHH-----hhcCC--CCcC---eEEEEcCCCCCCCeeecc
Q 015833 77 -EDLNAFNNYRA-CMP--WLAVPYSDLET--KKALN-----RKFDI--EGIP---CLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 77 -~~~~~~~~~~~-~~~--~~~~~~~d~~~--~~~l~-----~~~~v--~~~P---~~~lid~~~~~G~i~~~~ 133 (399)
.+.+.+.++.+ +++ |..+...|... ...+. ..+++ .++| +++|||+ +|+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~---~G~i~~~~ 150 (170)
T 2p5q_A 81 PGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK---DGQVVDRY 150 (170)
T ss_dssp CSCHHHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT---TSCEEEEE
T ss_pred CCCHHHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECC---CCCEEEee
Confidence 35778888887 444 32221112210 01111 23466 6777 9999999 99998763
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=153.72 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=101.3
Q ss_pred ccccccCCeEEecCCCC----EEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 7 YVQQLRRRMTSTKEIGE----EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~----~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
.+|..+|+|++++.+|+ ++++++++||+++|+|| ++||++|+.++|.|+++++++++.+ +++++|+.|. .+.
T Consensus 2 ~~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~-~~~ 78 (187)
T 1we0_A 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDT-HFV 78 (187)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHH
T ss_pred CCCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHH
Confidence 46889999999999999 99999999999999999 9999999999999999999999865 9999999986 456
Q ss_pred HHHhHhcC----CCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+++.+.+ ++......|. ...+++.|++. ++|+++|||+ +|+++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~~~g~~~P~~~lid~---~G~i~~~~ 135 (187)
T 1we0_A 79 HKAWHENSPAVGSIEYIMIGDP--SQTISRQFDVLNEETGLADRGTFIIDP---DGVIQAIE 135 (187)
T ss_dssp HHHHHHSCHHHHTCCSEEEECT--TCHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHhccccCCCceEEECC--chHHHHHhCCCcCCCCceeeEEEEECC---CCeEEEEE
Confidence 77777765 3322112233 27888999998 9999999999 99998764
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=152.04 Aligned_cols=122 Identities=15% Similarity=0.127 Sum_probs=103.1
Q ss_pred cccccccCCeEEecCCCCEEeccccCCC-EEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
..+|..+|+|++.|.+|+.+++++++|| +++|+|| ++||++|+.++|.|+++++++++.+ +++++|+.| +.+...
T Consensus 9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~ 85 (160)
T 1xvw_A 9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVG-PPPTHK 85 (160)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESC-CHHHHH
T ss_pred CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--cEEEEEeCC-CHHHHH
Confidence 5679999999999999999999999998 9999998 9999999999999999999998665 999999998 457788
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCC----CcC--eEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIE----GIP--CLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~----~~P--~~~lid~~~~~G~i~~~~ 133 (399)
++.+++++....+.|......+.+.|++. ++| +++|+|+ +|+++...
T Consensus 86 ~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~---~G~i~~~~ 138 (160)
T 1xvw_A 86 IWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR---SGIIRFAE 138 (160)
T ss_dssp HHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECT---TSBEEEEE
T ss_pred HHHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECC---CCeEEEEE
Confidence 88887664322222421137789999998 999 9999999 99998764
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-19 Score=153.54 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=97.6
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------C
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------E 77 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~ 77 (399)
.+.+|..+|+|+++|.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++| .
T Consensus 20 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~ 97 (183)
T 2obi_A 20 DWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPG 97 (183)
T ss_dssp CGGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCS
T ss_pred CCcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEEECCCCCCCCCC
Confidence 4567899999999999999999999999999999999999999999999999999999875 999999987 3
Q ss_pred ChHHHHHhHhcCCCcccccC--ChHH--HHHHHhhc-------C-----CCCcCeEEEEcCCCCCCCeeecc
Q 015833 78 DLNAFNNYRACMPWLAVPYS--DLET--KKALNRKF-------D-----IEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~--d~~~--~~~l~~~~-------~-----v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+.++++.+++++....+. |... ...+.+.+ + +.++|+++|||+ +|+++...
T Consensus 98 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~---~G~i~~~~ 166 (183)
T 2obi_A 98 SNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK---NGCVVKRY 166 (183)
T ss_dssp CHHHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT---TSCEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECC---CCCEEEEe
Confidence 67788888887663221111 2110 01121111 3 556799999999 99998763
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-19 Score=151.91 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=94.0
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE------- 77 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~------- 77 (399)
...+|..+|+|+++|.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++|.
T Consensus 4 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~ 81 (169)
T 2v1m_A 4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG--LRILAFPCNQFGGQEPW 81 (169)
T ss_dssp ---CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCS
T ss_pred cccCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC--eEEEEEECCccCCCCCC
Confidence 3457899999999999999999999999999999999999999999999999999998875 9999999873
Q ss_pred ChHHHHHh-HhcCC--CcccccCChHH--H----HHHH-hhcC-----CCCcCeEEEEcCCCCCCCeeecc
Q 015833 78 DLNAFNNY-RACMP--WLAVPYSDLET--K----KALN-RKFD-----IEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 78 ~~~~~~~~-~~~~~--~~~~~~~d~~~--~----~~l~-~~~~-----v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+.+.++ .++++ |..+...|... . ..+. ..++ +.++|+++|||+ +|+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~~ 149 (169)
T 2v1m_A 82 AEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR---QGQPVKRY 149 (169)
T ss_dssp CHHHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT---TSCEEEEE
T ss_pred CHHHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECC---CCCEEEEc
Confidence 45677777 36443 32221012110 0 1111 1234 566799999999 99998763
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=166.17 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=104.4
Q ss_pred hhhcCCCCccc-CC-CCC-ceeeccc-cCCcEEEEEEe-cCCChhhh-hhHHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 015833 172 LLTNHDRGYLL-GH-PPD-EKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDF-EVVF 244 (399)
Q Consensus 172 ~~g~~~p~f~l-~~-~g~-~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~-~vv~ 244 (399)
.+|..+|+|++ +. +|+ ..+++++ ++||+++|+|| ++||++|. .++|.|.+++++|+++ ++ +|++
T Consensus 4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~---------~~~~vv~ 74 (241)
T 1nm3_A 4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY---------GVDDILV 74 (241)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEEEE
Confidence 36889999999 65 442 0589999 89999999999 99999999 9999999999999876 89 9999
Q ss_pred EecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEeccc
Q 015833 245 VSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 302 (399)
||+| +.+..+++.++++...+|+..|.+..+++.||+. ..|++||| ++|+|++...
T Consensus 75 is~d-~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~ 141 (241)
T 1nm3_A 75 VSVN-DTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFI 141 (241)
T ss_dssp EESS-CHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEE
T ss_pred EEcC-CHHHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEE
Confidence 9998 5678888988887545999999999999999986 45899999 9999998853
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=147.37 Aligned_cols=115 Identities=15% Similarity=0.254 Sum_probs=93.0
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
.++|+|.+. .+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++|. .+.+.++.+++
T Consensus 3 ~pa~~~~~~-~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~-~~~~~~~~~~~ 78 (151)
T 3raz_A 3 LSADELAGW-KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALDT-SDNIGNFLKQT 78 (151)
T ss_dssp ----CEEET-TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTT--EEEEEEESSC-HHHHHHHHHHS
T ss_pred CCcchhhcc-cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCC-hHHHHHHHHHc
Confidence 345666655 8999999999999999999999999999999999999999996654 9999999975 56788888876
Q ss_pred CC--cccccCChHHHHHHHhhcC--CCCcCeEEEEcCCCCCCCeeec
Q 015833 90 PW--LAVPYSDLETKKALNRKFD--IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 90 ~~--~~~~~~d~~~~~~l~~~~~--v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+. ..+...+ .....+.+.|+ +.++|+++|||+ +|+++..
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 121 (151)
T 3raz_A 79 PVSYPIWRYTG-ANSRNFMKTYGNTVGVLPFTVVEAP---KCGYRQT 121 (151)
T ss_dssp CCSSCEEEECC-SCHHHHHHTTTCCSCCSSEEEEEET---TTTEEEE
T ss_pred CCCCceEecCc-cchHHHHHHhCCccCCCCEEEEECC---CCcEEEE
Confidence 53 3332222 22378999999 999999999999 9999865
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-19 Score=144.90 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=98.4
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
..+|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|++++++++ + +.++.|+.|.+.+.+.++.+++
T Consensus 2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~ 77 (136)
T 1lu4_A 2 DERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSKY 77 (136)
T ss_dssp GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHHH
T ss_pred CCCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--C--cEEEEEEcCCCHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999999999986 3 9999999999999999999976
Q ss_pred CCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 90 PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 90 ~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
++....+.|. ...+.+.|++.++|+++++|+ +|+++
T Consensus 78 ~~~~~~~~d~--~~~~~~~~~i~~~P~~~lid~---~G~i~ 113 (136)
T 1lu4_A 78 NLNFTNLNDA--DGVIWARYNVPWQPAFVFYRA---DGTST 113 (136)
T ss_dssp TCCSEEEECT--TSHHHHHTTCCSSSEEEEECT---TSCEE
T ss_pred CCCceEEECC--chhHHHhcCCCCCCEEEEECC---CCcEE
Confidence 6422222232 267889999999999999999 99987
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=147.33 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=104.0
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec--CCChHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--DEDLNAF 82 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~--D~~~~~~ 82 (399)
.+.+|..+|+|++++.+|+.+++++++ |+++|+||++||++|+.++|.|+++++++ + +.+++|++ +.+.+.+
T Consensus 4 ~l~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~--v~~v~v~~d~~~~~~~~ 77 (154)
T 3ia1_A 4 AVKPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---G--VPFYVISREPRDTREVV 77 (154)
T ss_dssp CCCSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---C--CCEEEEECCTTCCHHHH
T ss_pred cCCCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---C--CeEEEEeCCCcccHHHH
Confidence 466799999999999999999999999 99999999999999999999999999999 3 88999999 6788999
Q ss_pred HHhHhcCCCcccccCCh-HHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPWLAVPYSDL-ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~d~-~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++.++.++....+.+. .....+.+.|++.++|+++++|+ +|+++...
T Consensus 78 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 126 (154)
T 3ia1_A 78 LEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDR---EGKVVALF 126 (154)
T ss_dssp HHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECT---TSEEEEEE
T ss_pred HHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECC---CCCEEEEE
Confidence 99999887533323231 23489999999999999999999 99998653
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=153.35 Aligned_cols=125 Identities=10% Similarity=0.012 Sum_probs=97.0
Q ss_pred cccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC------
Q 015833 4 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE------ 77 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~------ 77 (399)
....+|..+|+|+++|.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++|.
T Consensus 21 ~~~~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~is~d~~~~~~~ 98 (185)
T 2gs3_A 21 QSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEP 98 (185)
T ss_dssp GGGGGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCC
T ss_pred hhccCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC--eEEEEEECcccCCCCC
Confidence 45567899999999999999999999999999999999999999999999999999999876 9999999873
Q ss_pred -ChHHHHHhHhcCCCcccccC--ChH---H---HHHHHhhc---C-----CCCcCeEEEEcCCCCCCCeeecc
Q 015833 78 -DLNAFNNYRACMPWLAVPYS--DLE---T---KKALNRKF---D-----IEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~--d~~---~---~~~l~~~~---~-----v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+.++++.++++.....+. |.. . -..+...+ + +.++|+++|||+ +|+++...
T Consensus 99 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~---~G~i~~~~ 168 (185)
T 2gs3_A 99 GSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK---NGCVVKRY 168 (185)
T ss_dssp SCHHHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT---TSCEEEEE
T ss_pred CCHHHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECC---CCCEEEee
Confidence 45778888886653211111 111 0 01111111 3 455799999999 99998763
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-19 Score=155.25 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=102.2
Q ss_pred ccccccccCCeEEecCC-------------C--CEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcE
Q 015833 5 QWYVQQLRRRMTSTKEI-------------G--EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDF 68 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~-------------G--~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~ 68 (399)
.+.+|..+|+|++++.+ | +++++++++||+++|+|| ++||++|+.++|.|+++++++++.+ +
T Consensus 3 ~l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v 80 (195)
T 2bmx_A 3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--A 80 (195)
T ss_dssp BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--E
T ss_pred cCCCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC--C
Confidence 46689999999999998 7 899999999999999999 9999999999999999999998765 9
Q ss_pred EEEEEecCCChHHHHHhHhcC----CCcccccCChHHHHHHHhhcCCC-----CcCeEEEEcCCCCCCCeeecc
Q 015833 69 EVVFVSSDEDLNAFNNYRACM----PWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 69 ~ii~Vs~D~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~~G~i~~~~ 133 (399)
++++|++|. .+..+++.+++ ++....+.|. ...+.+.|++. ++|+++|||+ +|+++...
T Consensus 81 ~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~~g~~~P~~~lid~---~G~i~~~~ 148 (195)
T 2bmx_A 81 QILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDI--KRELSQAAGVLNADGVADRVTFIVDP---NNEIQFVS 148 (195)
T ss_dssp EEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECT--TSHHHHHHTCBCTTSSBCEEEEEECT---TSBEEEEE
T ss_pred EEEEEECCC-HHHHHHHHHHhccccCCceeEEeCC--chHHHHHhCCcccCCCccceEEEEcC---CCeEEEEE
Confidence 999999986 56777777765 3211112232 27888999999 9999999999 99998764
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=143.68 Aligned_cols=113 Identities=18% Similarity=0.301 Sum_probs=99.3
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
+..+|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|++++++++ ++.++.|+.|.+.+.+.++.++
T Consensus 2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~ 77 (136)
T 1zzo_A 2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP----EVTFVGVAGLDQVPAMQEFVNK 77 (136)
T ss_dssp CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC----CeEEEEEeCCCCHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999986 3999999999999999999998
Q ss_pred CCCccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 89 MPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 89 ~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
+++...+. .+. ...+.+.|++.++|+++++|+ +|+++
T Consensus 78 ~~~~~~~~~~d~--~~~~~~~~~i~~~P~~~~id~---~g~i~ 115 (136)
T 1zzo_A 78 YPVKTFTQLADT--DGSVWANFGVTQQPAYAFVDP---HGNVD 115 (136)
T ss_dssp TTCTTSEEEECT--TCHHHHHTTCCSSSEEEEECT---TCCEE
T ss_pred cCCCceEEEEcC--CcHHHHHcCCCCCceEEEECC---CCCEE
Confidence 76522221 132 267889999999999999999 99987
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=151.68 Aligned_cols=120 Identities=12% Similarity=0.042 Sum_probs=94.3
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------Ch
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~ 79 (399)
..|..+|+|+|+|.+|+++++++++||++||+|||+||++|+.++|.|+++++++++.+ ++|++|++|. +.
T Consensus 13 ~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~~~d~~ 90 (180)
T 3kij_A 13 PKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH--FSVLAFPCNQFGESEPRPS 90 (180)
T ss_dssp CCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS--EEEEEEECCCSTTCCCSCH
T ss_pred CCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC--eEEEEEECCccccCCCCCH
Confidence 45788999999999999999999999999999999999999999999999999998876 9999999875 77
Q ss_pred HHHHHhHhc-CCCcccccC-----ChH---HHHHHHhhcCCCCcCe----EEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRAC-MPWLAVPYS-----DLE---TKKALNRKFDIEGIPC----LVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~-~~~~~~~~~-----d~~---~~~~l~~~~~v~~~P~----~~lid~~~~~G~i~~~~ 133 (399)
+.+.++.++ .+.....+. +.. ....+... +.++|+ ++|||+ +|+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~p~~~~~~~lid~---~G~i~~~~ 152 (180)
T 3kij_A 91 KEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDS--SKKEPRWNFWKYLVNP---EGQVVKFW 152 (180)
T ss_dssp HHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHH--HTCCCSSTTCEEEECT---TSCEEEEE
T ss_pred HHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhc--CCCCccccceEEEECC---CCCEEEEE
Confidence 888888887 553211111 111 01111111 236788 999999 99998763
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-18 Score=152.85 Aligned_cols=122 Identities=13% Similarity=0.029 Sum_probs=93.7
Q ss_pred ccccccCCeEEecCC-CCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------C
Q 015833 7 YVQQLRRRMTSTKEI-GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------D 78 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~-G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~ 78 (399)
..+..+|+|+++|.+ |++++|++++||+|||+|||+|||+|+.++|.|+++++++++.+ ++|++|++|. +
T Consensus 21 ~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g--~~vv~v~~d~~~~~e~d~ 98 (208)
T 2f8a_A 21 QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAK 98 (208)
T ss_dssp -CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSC
T ss_pred hhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC--eEEEEEECCcccccCCCC
Confidence 456789999999999 99999999999999999999999999999999999999999876 9999999872 3
Q ss_pred hHHHHHhHh------cCCCcccccC--ChH------HHHHHHhhc-------------------------CCCCcCeEEE
Q 015833 79 LNAFNNYRA------CMPWLAVPYS--DLE------TKKALNRKF-------------------------DIEGIPCLVV 119 (399)
Q Consensus 79 ~~~~~~~~~------~~~~~~~~~~--d~~------~~~~l~~~~-------------------------~v~~~P~~~l 119 (399)
.+...+|.+ +++..+..+. +.. ....+...+ ++.+.|+++|
T Consensus 99 ~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tfl 178 (208)
T 2f8a_A 99 NEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFL 178 (208)
T ss_dssp HHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEE
T ss_pred HHHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEE
Confidence 577788886 4442211111 100 111222122 3677899999
Q ss_pred EcCCCCCCCeeecc
Q 015833 120 LQPYDDKDDATLHD 133 (399)
Q Consensus 120 id~~~~~G~i~~~~ 133 (399)
||+ +|+++...
T Consensus 179 ID~---~G~i~~~~ 189 (208)
T 2f8a_A 179 VGP---DGVPLRRY 189 (208)
T ss_dssp ECT---TSCEEEEE
T ss_pred EcC---CCcEEEEe
Confidence 999 99998764
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-19 Score=153.77 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=86.2
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLN 80 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~~ 80 (399)
-+..+|+|+++|.+|+++++++++||+++|+|||+||++|+ ++|.|+++++++++.+ ++|++|++| .+.+
T Consensus 8 ~~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~d~~~ 84 (171)
T 3cmi_A 8 HMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG--FTIIGFPCNQFGHQEPGSDE 84 (171)
T ss_dssp --CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT--EEEEEEEECSCC--------
T ss_pred chhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC--eEEEEEECcccCCCCCCCHH
Confidence 36789999999999999999999999999999999999999 9999999999999875 999999986 3456
Q ss_pred HHHHhH-hcCC--CcccccCChH------HHHH-HHhhcCCCCcC------eEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYR-ACMP--WLAVPYSDLE------TKKA-LNRKFDIEGIP------CLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~-~~~~--~~~~~~~d~~------~~~~-l~~~~~v~~~P------~~~lid~~~~~G~i~~~~ 133 (399)
.+.++. ++.+ |..+...|.. .-.. ..+.|++.++| +++|||+ +|+++...
T Consensus 85 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~---~G~i~~~~ 150 (171)
T 3cmi_A 85 EIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK---KGKVYERY 150 (171)
T ss_dssp ----------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS---SSCEEEEE
T ss_pred HHHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECC---CCCEEEEe
Confidence 777777 6544 3333211111 0011 12468999999 9999999 99998763
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-19 Score=156.09 Aligned_cols=121 Identities=13% Similarity=0.197 Sum_probs=103.2
Q ss_pred cccccccCCeEEe-cCCCCEEeccccCCC-EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------
Q 015833 6 WYVQQLRRRMTST-KEIGEEVKVSDLEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD------- 76 (399)
Q Consensus 6 ~~~~~~~p~f~l~-d~~G~~v~l~~~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D------- 76 (399)
..+|..+|+|+++ +.+|+.+++++++|| +++|+||++||++|+.++|.|+++++++++.+ +++++|++|
T Consensus 18 ~~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~~~~~~~ 95 (196)
T 2ywi_A 18 FPLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG--VSFVAINSNDAEQYPE 95 (196)
T ss_dssp CCTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEECSCTTTCGG
T ss_pred CCcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCccccccc
Confidence 4678899999999 999999999999998 59999999999999999999999999998765 999999997
Q ss_pred CChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 77 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+.+.+.++.+++++....+.|. ...+.+.|++.++|+++|||+ +|+++...
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~~ 147 (196)
T 2ywi_A 96 DSPENMKKVAEELGYPFPYLYDE--TQEVAKAYDAACTPDFYIFDR---DLKCVYRG 147 (196)
T ss_dssp GSHHHHHHHHHHHTCCSCEEECS--SCHHHHHHTCCEESEEEEEET---TCBEEEEE
T ss_pred cCHHHHHHHHHHcCCCceEEECC--chHHHHHhCCCCCCeEEEEcC---CCeEEEcc
Confidence 46778888888765322111132 267889999999999999999 99998763
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=150.69 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=100.9
Q ss_pred ccccccccCCeEEe-cCCCCEEecccc-CCCEEEEEEe-cCCCcccHh-hHHHHHHHHHHHhcCCCcE-EEEEEecCCCh
Q 015833 5 QWYVQQLRRRMTST-KEIGEEVKVSDL-EGKVTALYFS-ANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVVFVSSDEDL 79 (399)
Q Consensus 5 ~~~~~~~~p~f~l~-d~~G~~v~l~~~-~gk~vlv~F~-a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~ii~Vs~D~~~ 79 (399)
...+|..+|+|+++ |.+|++++|+++ +||+++|+|| ++|||+|+. ++|.|+++++++++.| + +|++||.| +.
T Consensus 2 ~l~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d-~~ 78 (167)
T 2wfc_A 2 PIKEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVN-DS 78 (167)
T ss_dssp CCCTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESS-CH
T ss_pred CCCCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC-CH
Confidence 35679999999999 999999999998 9999999886 999999999 9999999999999876 9 99999998 45
Q ss_pred HHHHHhHhcCCCc-ccc-cCChHHHHHHHhhcCCCCc-----------CeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWL-AVP-YSDLETKKALNRKFDIEGI-----------PCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~-~~~-~~d~~~~~~l~~~~~v~~~-----------P~~~lid~~~~~G~i~~~~ 133 (399)
+..+++.++.+.. .+| +.|. ..++.+.|++... |+++|| + +|+|+...
T Consensus 79 ~~~~~~~~~~~~~~~fp~l~D~--~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~---~G~I~~~~ 139 (167)
T 2wfc_A 79 FVMDAWGKAHGADDKVQMLADP--GGAFTKAVDMELDLSAVLGNVRSKRYSLVI-E---DGVVTKVN 139 (167)
T ss_dssp HHHHHHHHHTTCTTTSEEEECT--TSHHHHHTTCEECCHHHHSSCEECCEEEEE-E---TTEEEEEE
T ss_pred HHHHHHHHhcCCCcceEEEECC--CCcHHHHcCCccccccccCcccceEEEEEE-e---CCEEEEEE
Confidence 6778888876643 122 2343 3789999998754 999999 8 99999764
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-19 Score=158.23 Aligned_cols=116 Identities=7% Similarity=0.039 Sum_probs=101.5
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCC-Chhhh-----hhHHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCE-----KFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~-----~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~ 244 (399)
.+|.++|+|++ +.+|+ .+++++++||++||+||+.| ||+|. .+++.|.++ | . +++|++
T Consensus 23 ~vG~~APdFtL~d~~G~-~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~---------gv~Vvg 87 (224)
T 3keb_A 23 RKGDYLPSFMLVDDQKH-DAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--P---------HLKLIV 87 (224)
T ss_dssp CTTCBCCCCEEEETTSC-EEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--T---------TSEEEE
T ss_pred CCCCCCCCeEEECCCCC-EEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--C---------CCEEEE
Confidence 36889999999 99999 99999999999999999987 99999 888888776 4 3 689999
Q ss_pred EecCCCHHHHHHHHhcCCCcccccCCch-hHHHHHhCCCCc---------cceEEEECCCCcEEecccc
Q 015833 245 VSTDRDQTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQG---------IPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~~~~~~p~~~d~-~~~~~~~~~v~~---------~P~~~lid~~G~i~~~~~~ 303 (399)
||+| +....++|.++++.-+||++.|. +..+++.||+.. .|++||||++|+|++....
T Consensus 88 IS~D-s~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~ 155 (224)
T 3keb_A 88 ITVD-SPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERL 155 (224)
T ss_dssp EESS-CHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEEC
T ss_pred EECC-CHHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEec
Confidence 9998 67788888888774479999997 699999999964 7999999999999988543
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=155.62 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=102.6
Q ss_pred HhhhcCCCCcc----c-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 015833 171 NLLTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244 (399)
Q Consensus 171 ~~~g~~~p~f~----l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~ 244 (399)
..+|.++|||+ + +.+|+ +++|++++||+|||+|| +.||+.|..++..+.+++++|++. +++|++
T Consensus 26 ~~vG~~APdF~~~a~l~d~~g~-~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~---------g~~vig 95 (219)
T 3tue_A 26 AKINSPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNEL---------NCEVLA 95 (219)
T ss_dssp CCTTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTT---------TEEEEE
T ss_pred cccCCcCCCCcccccccCCCCc-EEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccC---------CcEEEE
Confidence 35899999998 6 77888 99999999999999999 789999999999999999999976 899999
Q ss_pred EecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecc
Q 015833 245 VSTDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 301 (399)
||+| +...-+++..+. ..+.||++.|.+.++++.||+- ....+||||++|+|+...
T Consensus 96 iS~D-s~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~ 163 (219)
T 3tue_A 96 CSID-SEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQIT 163 (219)
T ss_dssp EESS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred eeCC-chhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEE
Confidence 9999 444555554432 3578999999999999999982 235899999999998764
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=157.20 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=97.6
Q ss_pred cccccccccCCeEEecC---CCCEEeccccCCCEEEEEEec-CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 4 SQWYVQQLRRRMTSTKE---IGEEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~---~G~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
....+|..+|+|+|++. +|++++|++++||++||+||+ +||++|+.++|.|++++++|++.+ ++||+|++|..
T Consensus 38 ~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv~Is~D~~- 114 (222)
T 3ztl_A 38 MVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVIACSTDSQ- 114 (222)
T ss_dssp --CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-
T ss_pred ccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-
Confidence 34577999999999955 569999999999999999996 999999999999999999999776 99999999863
Q ss_pred HHHHHhHhcC---------CCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACM---------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+...++.+.+ +|..+. |.. ..+.+.|++. .+|+++|||+ +|+|+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~l~--D~~--~~~~~~ygv~~~~~g~~~P~~~lID~---~G~I~~~~ 176 (222)
T 3ztl_A 115 YSHLAWDNLDRKSGGLGHMKIPLLA--DRK--QEISKAYGVFDEEDGNAFRGLFIIDP---NGILRQIT 176 (222)
T ss_dssp HHHHHHHHSCGGGTSCCSCSSCEEE--CSS--SHHHHHTTCBCTTTSSBCEEEEEECT---TSEEEEEE
T ss_pred HHHHHHHHHhhhhccccccceeEEe--CCc--hHHHHHcCCeecCCCCccceEEEECC---CCeEEEEE
Confidence 4445555533 232222 322 7889999998 8999999999 99998764
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-19 Score=147.40 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=101.0
Q ss_pred ccccccCCeEE--ecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-----Ch
Q 015833 7 YVQQLRRRMTS--TKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-----DL 79 (399)
Q Consensus 7 ~~~~~~p~f~l--~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-----~~ 79 (399)
.+|..+|+|++ .+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++. +.++.|++|. +.
T Consensus 2 ~~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~ 78 (148)
T 2b5x_A 2 KLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDP 78 (148)
T ss_dssp CTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSH
T ss_pred CCCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCH
Confidence 46889999999 78999999999999999999999999999999999999999999754 8999999875 67
Q ss_pred HHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 80 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.+.++.+++++....+.+. ...+.+.|++.++|+++++|+ +|+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 126 (148)
T 2b5x_A 79 GKIKETAAEHDITQPIFVDS--DHALTDAFENEYVPAYYVFDK---TGQLRHF 126 (148)
T ss_dssp HHHHHHHHHTTCCSCEEECS--SCHHHHHTCCCCSSEEEEECT---TCBEEEE
T ss_pred HHHHHHHHHcCCCcceEECC--chhHHHHhCCCCCCEEEEECC---CCcEEEE
Confidence 88899988776422111122 267899999999999999999 9999865
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=151.18 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=99.3
Q ss_pred cccccc--CCeEEecCCCCEEeccccCCCEEEEEEecCCCcc-cHhhHHHHHHHHHHHhcC-CCcEEEEEEecCC---Ch
Q 015833 7 YVQQLR--RRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN-GSDFEVVFVSSDE---DL 79 (399)
Q Consensus 7 ~~~~~~--p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~-~~~~~ii~Vs~D~---~~ 79 (399)
.+|..+ |+|+|+|.+|+++++++++||++||+||++||++ |+.++|.|+++++++++. +.++++++|++|. +.
T Consensus 14 ~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~ 93 (200)
T 2b7k_A 14 GYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSP 93 (200)
T ss_dssp --CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCH
T ss_pred ccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCH
Confidence 346654 9999999999999999999999999999999997 999999999999999853 2359999999995 67
Q ss_pred HHHHHhHhcCC--CcccccCChHHHHHHHhhcCCC-Cc---------------CeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMP--WLAVPYSDLETKKALNRKFDIE-GI---------------PCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~-~~---------------P~~~lid~~~~~G~i~~~~ 133 (399)
+.+++|.++++ |..++. +.+....+++.|++. .. |+++|||+ +|+++...
T Consensus 94 ~~~~~~~~~~~~~~~~l~~-~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~---~G~i~~~~ 161 (200)
T 2b7k_A 94 AVLKEYLSDFHPSILGLTG-TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP---EGQFVDAL 161 (200)
T ss_dssp HHHHHHHTTSCTTCEEEEC-CHHHHHHHHHHTTC--------------CTTTCCCEEEECT---TSCEEEEE
T ss_pred HHHHHHHHHcCCCceEEeC-CHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC---CCcEEEEe
Confidence 88888888765 554544 344447888999986 33 48899999 99998653
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=152.50 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=100.1
Q ss_pred cccccCCeEEecC--CC--CEEecccc-CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 8 VQQLRRRMTSTKE--IG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 8 ~~~~~p~f~l~d~--~G--~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
+|..+|+|++++. +| ++++|+++ +||+++|+|| ++||++|+.++|.|+++++++++.+ +++++|++|. .+.
T Consensus 2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~ 78 (192)
T 2h01_A 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDS-KFT 78 (192)
T ss_dssp CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHH
T ss_pred CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEeCC-HHH
Confidence 5889999999999 99 99999999 9999999999 9999999999999999999998765 9999999984 567
Q ss_pred HHHhHhcC-------CCcccccCChHHHHHHHhhcCCC-----CcCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNYRACM-------PWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~~G~i~~~~ 133 (399)
..++.+.+ ++....+.|. ...+.+.|++. .+|+++|||+ +|+++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~D~--~~~~~~~~gv~~~~g~~~P~~~liD~---~G~i~~~~ 137 (192)
T 2h01_A 79 HLAWKKTPLSQGGIGNIKHTLISDI--SKSIARSYDVLFNESVALRAFVLIDK---QGVVQHLL 137 (192)
T ss_dssp HHHHHTSCGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTEECCEEEEECT---TSBEEEEE
T ss_pred HHHHHHhHHhhCCccCCCcCeEECC--cHHHHHHhCCcCcCCceeeEEEEEcC---CCEEEEEE
Confidence 77777765 2211112233 37899999999 8999999999 99998764
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=153.69 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=100.8
Q ss_pred ccccccCCeEEecC--CCC---EEecccc-CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 7 YVQQLRRRMTSTKE--IGE---EVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d~--~G~---~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
.+|..+|+|++++. +|+ +++++++ +||+++|+|| ++||++|+.++|.|+++++++++.+ +++++|+.|. .
T Consensus 2 ~~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~-~ 78 (198)
T 1zof_A 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDS-E 78 (198)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSC-H
T ss_pred CCCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-H
Confidence 46889999999999 898 9999999 9999999999 9999999999999999999998875 9999999985 5
Q ss_pred HHHHHhHhc-------CCCcccccCChHHHHHHHhhcCCC-----CcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRAC-------MPWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~-------~~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~~G~i~~~~ 133 (399)
+...++.+. .++....+.|. ...+.+.|++. ++|+++|||+ +|+++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~~g~~~P~~~lid~---~G~i~~~~ 139 (198)
T 1zof_A 79 QVHFAWKNTPVEKGGIGQVSFPMVADI--TKSISRDYDVLFEEAIALRGAFLIDK---NMKVRHAV 139 (198)
T ss_dssp HHHHHHHTSCGGGTCCCCCSSCEEECT--TSHHHHHTTCEETTTEECEEEEEEET---TTEEEEEE
T ss_pred HHHHHHHHhhhhcccccCceeEEEECC--chHHHHHhCCcccCCcccceEEEECC---CCEEEEEE
Confidence 677777776 33221112232 37889999999 9999999999 99998764
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=152.88 Aligned_cols=119 Identities=22% Similarity=0.254 Sum_probs=99.2
Q ss_pred ccccccCCeEEecC-CC--CEEeccccCCCEEEEEEec-CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 7 YVQQLRRRMTSTKE-IG--EEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d~-~G--~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.+|..+|+|+|++. +| ++++|++++||+++|+||+ +||++|+.++|.|+++++++++.+ ++|++|+.|. .+..
T Consensus 2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~ 78 (186)
T 1n8j_A 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDT-HFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHH
Confidence 46889999999999 59 8999999999999999995 999999999999999999999876 9999999984 5667
Q ss_pred HHhHhcC----CCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
++|.+++ ++.+..+.|. ...+.+.|++. .+|+++|||+ +|+|+...
T Consensus 79 ~~~~~~~~~~~~~~fp~l~D~--~~~~~~~ygv~~~~~g~~~p~~~lID~---~G~i~~~~ 134 (186)
T 1n8j_A 79 KAWHSSSETIAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDP---QGIIQAIE 134 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECT--TSHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHcCcccCCceeEEECC--chHHHHHhCCccCCCCceeeEEEEECC---CCeEEEEE
Confidence 7777766 3221112243 26788999997 4799999999 99999764
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=148.93 Aligned_cols=121 Identities=14% Similarity=0.078 Sum_probs=99.7
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
...+|..+|+|+++|.+|++++|++++||+++|+|| ++||++|+.++|.|+++++++ .+ ++|++|+.|. .+..+
T Consensus 16 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~ 90 (165)
T 1q98_A 16 FPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SN--TIVLCISADL-PFAQA 90 (165)
T ss_dssp CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TT--EEEEEEESSC-HHHHT
T ss_pred cCCCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--CEEEEEeCCC-HHHHH
Confidence 346788999999999999999999999999999999 899999999999999999998 33 9999999974 56677
Q ss_pred HhHhcCCC-cccccCChHHHHHHHhhcCCCC---------cCeEEEEcCCCCCCCeeeccc
Q 015833 84 NYRACMPW-LAVPYSDLETKKALNRKFDIEG---------IPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 84 ~~~~~~~~-~~~~~~d~~~~~~l~~~~~v~~---------~P~~~lid~~~~~G~i~~~~~ 134 (399)
++.+++++ ....+.|. ....+.+.|++.. .|+++|||+ +|+|+....
T Consensus 91 ~~~~~~~~~~~~~l~D~-~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~---~G~i~~~~~ 147 (165)
T 1q98_A 91 RFCGAEGIENAKTVSTF-RNHALHSQLGVDIQTGPLAGLTSRAVIVLDE---QNNVLHSQL 147 (165)
T ss_dssp TCTTTTTCTTEEEEECT-TCTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred HHHHHcCCCceEEeecc-ccchHHHHhCceecccccCCccceeEEEEcC---CCEEEEEEe
Confidence 78777664 22222343 1277889999853 599999999 999987653
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=155.44 Aligned_cols=119 Identities=12% Similarity=0.168 Sum_probs=98.0
Q ss_pred hhhcCCCCccc-CC--CCCceeeccccCCc-E-EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL-GH--PPDEKVPVSSLVGK-T-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~~--~g~~~~~l~~~~gk-~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|..+|+|++ +. +| .+++++++|| + ||++||++||++|..+++.|.+++++|+++ +++||+||
T Consensus 4 ~iG~~aP~F~l~~~~~~G--~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~---------~v~vi~vS 72 (220)
T 1xcc_A 4 HLGATFPNFTAKASGIDG--DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL---------NCKLIGFS 72 (220)
T ss_dssp CTTCBCCCCEECBTTCSS--CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred CCCCCCCCcEeecccCCC--cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEe
Confidence 47899999999 77 66 6999999998 5 455558999999999999999999999866 89999999
Q ss_pred cCCCHHHHHHHHh------cCCCcccccCCchhHHHHHhCCCC------------ccceEEEECCCCcEEeccc
Q 015833 247 TDRDQTSFESYFG------TMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 247 ~d~~~~~~~~~~~------~~~~~~~p~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~ 302 (399)
+|. ....+++.+ ....++||+..|.+..+++.||+. .+|++||||++|+|+....
T Consensus 73 ~D~-~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~ 145 (220)
T 1xcc_A 73 CNS-KESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVL 145 (220)
T ss_dssp SSC-HHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEE
T ss_pred CCC-HHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEe
Confidence 995 333444443 123478999999999999999983 4799999999999998853
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-19 Score=155.87 Aligned_cols=123 Identities=7% Similarity=0.057 Sum_probs=96.5
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE------- 77 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~------- 77 (399)
.+..+..+|+|+++|.+|+++++++++||++||+||++||++|+.++|.|+++++++++.+ ++|++|++|.
T Consensus 21 ~~~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~ 98 (190)
T 2vup_A 21 HMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPCNQFGGQEPG 98 (190)
T ss_dssp ---CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--CEEEEEECCCSTTCCCS
T ss_pred cCCCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC--eEEEEEEcCccCCCCCC
Confidence 3456788999999999999999999999999999999999999999999999999999875 9999999984
Q ss_pred ChHHHHHhH-hcCC--CcccccCChHH------HHHH-HhhcCCCCcC------eEEEEcCCCCCCCeeec
Q 015833 78 DLNAFNNYR-ACMP--WLAVPYSDLET------KKAL-NRKFDIEGIP------CLVVLQPYDDKDDATLH 132 (399)
Q Consensus 78 ~~~~~~~~~-~~~~--~~~~~~~d~~~------~~~l-~~~~~v~~~P------~~~lid~~~~~G~i~~~ 132 (399)
+.+.+.++. ++.+ |..+...|... ...+ .+.|++.++| +++|||+ +|+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~---~G~i~~~ 166 (190)
T 2vup_A 99 NEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR---DGVPVER 166 (190)
T ss_dssp CHHHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT---TSCEEEE
T ss_pred CHHHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECC---CCcEEEE
Confidence 677888888 5443 33222112110 0111 2347888888 9999999 9999876
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-19 Score=153.44 Aligned_cols=115 Identities=15% Similarity=0.086 Sum_probs=96.5
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
..+|+|+|+|.+|++++|++++||+++|+|| ++||++|+.++|.|+++++++++.+ ++|++|+.|. .+...++.++
T Consensus 29 ~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs~D~-~~~~~~~~~~ 105 (179)
T 3ixr_A 29 HSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVSRDS-VKSHDSFCAK 105 (179)
T ss_dssp HHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESCC-HHHHHHHHHH
T ss_pred CcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHH
Confidence 3499999999999999999999999999999 9999999999999999999999876 9999999984 5667778776
Q ss_pred CCCcccccCChHHHHHHHhhcCCCC------------cCeEEEEcCCCCCCCeeec
Q 015833 89 MPWLAVPYSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 89 ~~~~~~~~~d~~~~~~l~~~~~v~~------------~P~~~lid~~~~~G~i~~~ 132 (399)
++..+..+.|.+ ..+++.|++.. .|+++|||+ +|+|+..
T Consensus 106 ~~~~f~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~---~G~I~~~ 156 (179)
T 3ixr_A 106 QGFTFPLVSDSD--AILCKAFDVIKEKTMYGRQVIGIERSTFLIGP---THRIVEA 156 (179)
T ss_dssp HTCCSCEEECTT--CHHHHHTTCEEEECCC--CEEEECCEEEEECT---TSBEEEE
T ss_pred cCCceEEEECCc--hHHHHHcCCcccccccCcccCCcceEEEEECC---CCEEEEE
Confidence 543222222432 68889999853 699999999 9999865
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=155.16 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=102.0
Q ss_pred ccccccccCCeEEecC--CC--CEEecccc-CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 015833 5 QWYVQQLRRRMTSTKE--IG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~--~G--~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~ 78 (399)
...+|..+|+|++++. +| ++++|+++ +||+++|+|| ++||++|+.++|.|++++++|++.+ ++||+|++| +
T Consensus 20 ~l~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D-~ 96 (213)
T 2i81_A 20 PTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN--VELLGCSVD-S 96 (213)
T ss_dssp CCCBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT--EEEEEEESS-C
T ss_pred cccCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-C
Confidence 3467899999999999 89 89999999 9999999999 9999999999999999999998765 999999998 4
Q ss_pred hHHHHHhHhcC-------CCcccccCChHHHHHHHhhcCCC-----CcCeEEEEcCCCCCCCeeecc
Q 015833 79 LNAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 79 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+...++.+.. ++....+.|. ..++++.|++. .+|+++|||+ +|+++...
T Consensus 97 ~~~~~~~~~~~~~~~g~~~~~fp~l~D~--~~~~~~~ygv~~~~g~~~p~~~lID~---~G~i~~~~ 158 (213)
T 2i81_A 97 KYTHLAWKKTPLAKGGIGNIKHTLLSDI--TKSISKDYNVLFDDSVSLRAFVLIDM---NGIVQHLL 158 (213)
T ss_dssp HHHHHHHHSSCGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHHHHHhhCCccCCCceEEECC--chHHHHHhCCccccCCcccEEEEECC---CCEEEEEE
Confidence 56677777755 2211112243 37899999999 8999999999 99999774
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-20 Score=157.27 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=102.2
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHH-HHHHHh-cCCCcEEEEEEecCCChHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD-VYEELR-NNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~-l~~~~~-~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
..+|..+|+|+++|.+|+.+++++++||+++|+||++||++|+.++|.|++ ++++++ +. ++.++.|++|.+.+.+.
T Consensus 7 l~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~--~~~vv~v~~d~~~~~~~ 84 (159)
T 2ls5_A 7 VRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA--DFALIGIDRDEPLEKVL 84 (159)
Confidence 457899999999999999999999999999999999999999999999998 999887 44 49999999998877888
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcC--CCCcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFD--IEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~--v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.+++++....+.|. ...+.+.|+ +.++|+++|+|+ +|+++...
T Consensus 85 ~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~P~~~lid~---~G~i~~~~ 131 (159)
T 2ls5_A 85 AFAKSTGVTYPLGLDP--GADIFAKYALRDAGITRNVLIDR---EGKIVKLT 131 (159)
Confidence 8888766422222233 378899999 466999999999 99998653
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=153.72 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=100.9
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
...+|..+|+|+|+|.+|++++|++++||+++|+|| ++||++|+.++|.|+++++++ .+ ++|++||.| +.+..+
T Consensus 51 ~l~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~--v~vv~Is~D-~~~~~~ 125 (200)
T 3zrd_A 51 LPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--EN--TVVLCISSD-LPFAQS 125 (200)
T ss_dssp CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TT--EEEEEEESS-CHHHHT
T ss_pred cCCCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CC--CEEEEEECC-CHHHHH
Confidence 356789999999999999999999999999999999 789999999999999999998 43 999999998 456777
Q ss_pred HhHhcCCC-cccccCChHHHHHHHhhcCCC---------CcCeEEEEcCCCCCCCeeeccc
Q 015833 84 NYRACMPW-LAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 84 ~~~~~~~~-~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
++.+++++ ....+.|.. ...+.+.|++. ..|+++|||+ +|+|+....
T Consensus 126 ~~~~~~~~~~f~~l~D~~-~~~~~~~ygv~~~~~~~~g~~~p~~~lID~---~G~I~~~~~ 182 (200)
T 3zrd_A 126 RFCGAEGLSNVITLSTLR-GADFKQAYGVAITEGPLAGLTARAVVVLDG---QDNVIYSEL 182 (200)
T ss_dssp TCTTTTTCTTEEEEETTS-CTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred HHHHHcCCCCceEEecCc-hHHHHHHhCceeecccCCCccccEEEEECC---CCeEEEEEe
Confidence 88877664 322233431 37889999986 3699999999 999997643
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-19 Score=151.46 Aligned_cols=120 Identities=23% Similarity=0.329 Sum_probs=101.9
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChh-hhhhHHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~vv~is~d 248 (399)
+.|..+|+|++ +.+| .+++++++||+++|+||++||++ |+.++|.|.+++++|+++ + .++.|++|++|
T Consensus 11 ~~G~~~p~f~l~~~~g--~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~-------~~~~v~vv~is~d 81 (172)
T 2k6v_A 11 LLNPKPVDFALEGPQG--PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPK-------AQERVQVIFVSVD 81 (172)
T ss_dssp EEEEEECCCEEECSSS--EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHH-------HHTTEEEEEEESC
T ss_pred ccCCCCCCeEEEcCCC--CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhh-------ccCCEEEEEEEEC
Confidence 45788999999 8888 79999999999999999999997 999999999999988753 1 26999999998
Q ss_pred C---CHHHHHHHHhcCCCcccccCCchh---HHHHHhCCC---------------CccceEEEECCCCcEEeccc
Q 015833 249 R---DQTSFESYFGTMPWLALPFGDPTI---KELTKYFDV---------------QGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 ~---~~~~~~~~~~~~~~~~~p~~~d~~---~~~~~~~~v---------------~~~P~~~lid~~G~i~~~~~ 302 (399)
. +.+.+++++++++ +.+|+..|.. ..+++.|++ .++|+++||| +|+++.+..
T Consensus 82 ~~~d~~~~~~~~~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~ 154 (172)
T 2k6v_A 82 PERDPPEVADRYAKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYS 154 (172)
T ss_dssp TTTCCHHHHHHHHHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEEC
T ss_pred CCCCCHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEEC
Confidence 4 4678888888876 6778877765 678888774 5789999999 999998754
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=154.96 Aligned_cols=120 Identities=20% Similarity=0.245 Sum_probs=99.2
Q ss_pred ccccccccCCeEEecC---CCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 015833 5 QWYVQQLRRRMTSTKE---IGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 80 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~---~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~ 80 (399)
...+|..+|+|++++. +|++++|++++||+++|+|| ++||++|+.++|.|++++++|++.+ ++||+|++|. .+
T Consensus 18 ~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~--v~vv~Is~D~-~~ 94 (211)
T 2pn8_A 18 LYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDS-QF 94 (211)
T ss_dssp -CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HH
T ss_pred cCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HH
Confidence 4567899999999974 56899999999999999999 9999999999999999999998765 9999999974 45
Q ss_pred HHHHhHhcC-------CCcccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRACM-------PWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
...++.+.. ++ .+| +.|. ...+++.|++. .+|+++|||+ +|+|+...
T Consensus 95 ~~~~~~~~~~~~~g~~~~-~fp~l~D~--~~~~~~~ygv~~~~~g~~~p~~~lID~---~G~I~~~~ 155 (211)
T 2pn8_A 95 THLAWINTPRRQGGLGPI-RIPLLSDL--THQISKDYGVYLEDSGHTLRGLFIIDD---KGILRQIT 155 (211)
T ss_dssp HHHHHHTSCGGGTCCCSC-SSCEEECT--TSHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHhhhccCccCC-ceEEEECC--chHHHHHcCCcccCCCcccceEEEECC---CCEEEEEE
Confidence 667777755 22 222 2243 27899999994 6999999999 99999764
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=167.75 Aligned_cols=93 Identities=20% Similarity=0.399 Sum_probs=69.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|+|+|+|||+||++|+.+.|.|.++++++++. .++.++.|..+.+ +
T Consensus 369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--------~~v~~~~id~~~~------------------------~ 416 (481)
T 3f8u_A 369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD--------PNIVIAKMDATAN------------------------D 416 (481)
T ss_dssp TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTC--------SSEEEEEEETTSS------------------------C
T ss_pred CCCcEEEEEecCcChhHHHhhHHHHHHHHHhccC--------CCEEEEEEECCch------------------------h
Confidence 3799999999999999999999999999998753 2566666665532 3
Q ss_pred HHHhCCCCccceEEEECCCCc--EEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccC
Q 015833 276 LTKYFDVQGIPCLVIIGPEGK--TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 335 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~--i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~ 335 (399)
+++.|+|.++||+++++++|+ ++...|. ...+.|.+.|++.+...
T Consensus 417 ~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~---------------~~~~~l~~~l~~~~~~~ 463 (481)
T 3f8u_A 417 VPSPYEVRGFPTIYFSPANKKLNPKKYEGG---------------RELSDFISYLQREATNP 463 (481)
T ss_dssp CCTTCCCCSSSEEEEECTTCTTSCEECCSC---------------CSHHHHHHHHHHHCSSC
T ss_pred hHhhCCCcccCEEEEEeCCCeEeeeEeCCC---------------CCHHHHHHHHHHhcCCc
Confidence 557899999999999988776 3333221 22467777777765543
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=148.94 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=99.4
Q ss_pred ccccccccCCeEEecC--CCCEEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 5 QWYVQQLRRRMTSTKE--IGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~--~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
...+|..+|+|++++. +|+.++++++ +||+++|+||++||++|+.++|.|++++++ + +.+++|+.|.+.+.
T Consensus 21 ~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~v~~~~~~~~ 94 (168)
T 2b1k_A 21 SALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDDRQK 94 (168)
T ss_dssp CTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CCEEEEEESCCHHH
T ss_pred ccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----C--CEEEEEECCCChHH
Confidence 4467999999999999 9999999985 999999999999999999999999998875 3 88999999999999
Q ss_pred HHHhHhcCCCcccc-cCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 82 FNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 82 ~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++.+++++.... ..|. ...+++.|++.++|+++++++ +|+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 141 (168)
T 2b1k_A 95 AISWLKELGNPYALSLFDG--DGMLGLDLGVYGAPETFLIDG---NGIIRYR 141 (168)
T ss_dssp HHHHHHHHCCCCSEEEEET--TCHHHHHHTCCSSSEEEEECT---TSBEEEE
T ss_pred HHHHHHHcCCCCceeeECc--chHHHHHcCccccCEEEEECC---CCeEEEE
Confidence 99998876632211 1132 367899999999999999999 9999865
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=148.16 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=97.6
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEec-CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
..+|..+|+|+++|.+|+++++++++||+++|+||+ +||++|+.++|.|+++++++ . ++++++|+.|. .+..++
T Consensus 16 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~--~v~vv~is~d~-~~~~~~ 90 (163)
T 1psq_A 16 LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D--NTVVLTVSMDL-PFAQKR 90 (163)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T--TEEEEEEESSC-HHHHHH
T ss_pred CCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C--CcEEEEEECCC-HHHHHH
Confidence 457889999999999999999999999999999995 99999999999999999998 3 39999999985 566777
Q ss_pred hHhcCCC-cccccCChHHHHHHHhhcCCC----C--cCeEEEEcCCCCCCCeeecc
Q 015833 85 YRACMPW-LAVPYSDLETKKALNRKFDIE----G--IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~~~~~-~~~~~~d~~~~~~l~~~~~v~----~--~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+++++ ....+.|. ....+.+.|++. + .|+++|||+ +|+++...
T Consensus 91 ~~~~~~~~~~~~l~D~-~~~~~~~~~gv~~~~~g~~~p~~~liD~---~G~i~~~~ 142 (163)
T 1psq_A 91 WCGAEGLDNAIMLSDY-FDHSFGRDYALLINEWHLLARAVFVLDT---DNTIRYVE 142 (163)
T ss_dssp HHHHHTCTTSEEEECT-TTCHHHHHHTCBCTTTCSBCCEEEEECT---TCBEEEEE
T ss_pred HHHhcCCCCcEEecCC-chhHHHHHhCCccccCCceEEEEEEEcC---CCeEEEEE
Confidence 7776543 21112241 226888999987 3 499999999 99998764
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=153.24 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=99.7
Q ss_pred ccccccccCCeEEec---CCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 015833 5 QWYVQQLRRRMTSTK---EIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 80 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d---~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~ 80 (399)
...+|..+|+|++++ .+|++++|++++||+++|+|| ++||++|+.++|.|++++++|++.+ ++|++|++|. .+
T Consensus 26 ~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~-~~ 102 (220)
T 1zye_A 26 APAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDS-HF 102 (220)
T ss_dssp -CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HH
T ss_pred cccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HH
Confidence 456799999999984 578999999999999999999 9999999999999999999998875 9999999984 45
Q ss_pred HHHHhHhcC-------CCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
...++.+.+ ++....+.|. ...+++.|++. .+|+++|||+ +|+++...
T Consensus 103 ~~~~~~~~~~~~~g~~~~~fp~l~D~--~~~i~~~ygv~~~~~g~~~P~~~liD~---~G~I~~~~ 163 (220)
T 1zye_A 103 SHLAWINTPRKNGGLGHMNIALLSDL--TKQISRDYGVLLEGPGLALRGLFIIDP---NGVIKHLS 163 (220)
T ss_dssp HHHHHHTSCGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHHHHhCCCcCCceEEEECC--cHHHHHHhCCeecCCCcccceEEEECC---CCEEEEEE
Confidence 666666654 2211112233 37899999998 9999999999 99998764
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-18 Score=152.75 Aligned_cols=119 Identities=12% Similarity=0.195 Sum_probs=99.4
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCc--EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGK--TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk--~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|..+|+|++ +.+| .+++++++|| +||++||++||++|..+++.|.+++++|+++ +++||+||+|
T Consensus 6 ~~G~~aP~F~l~~~~G--~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~---------~v~vi~IS~D 74 (224)
T 1prx_A 6 LLGDVAPNFEANTTVG--RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR---------NVKLIALSID 74 (224)
T ss_dssp CTTCBCCCCEEEETTE--EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS
T ss_pred CCcCCCCCcEEecCCC--CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHC---------CCEEEEEcCC
Confidence 47899999999 8887 6999999997 4666668999999999999999999999866 8999999999
Q ss_pred CCHHHHHHHHhc---C------CCcccccCCchhHHHHHhCCCC------------ccceEEEECCCCcEEeccc
Q 015833 249 RDQTSFESYFGT---M------PWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 ~~~~~~~~~~~~---~------~~~~~p~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~ 302 (399)
. .+..+++.+. . ..++||+..|.+..+++.||+. .+|++||||++|+|+....
T Consensus 75 ~-~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~ 148 (224)
T 1prx_A 75 S-VEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSIL 148 (224)
T ss_dssp C-HHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEE
T ss_pred C-HHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEe
Confidence 5 3444444443 1 3478999999899999999984 4799999999999998853
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=148.81 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=99.8
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCC-CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
...+|..+|+|+++|.+|+++++++++||+++|+||++| |++|+.++|.|+++++++ . ++++++|+.|. .+..+
T Consensus 17 ~~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~--~~~vv~is~d~-~~~~~ 91 (167)
T 2jsy_A 17 EVKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G--DVNVYTISADL-PFAQA 91 (167)
T ss_dssp CCCTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S--SCEEEEEECSS-GGGTS
T ss_pred ccCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C--CCEEEEEECCC-HHHHH
Confidence 345788999999999999999999999999999999999 999999999999999999 3 39999999984 45677
Q ss_pred HhHhcCCCcccc-cCChHHHHHHHhhcCCCC------cCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWLAVP-YSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~~G~i~~~~ 133 (399)
++.+++++..+| +.|. ....+.+.|++.. +|+++|||+ +|+++...
T Consensus 92 ~~~~~~~~~~~~~~~d~-~~~~~~~~~~v~~~~~g~~~p~~~lid~---~G~i~~~~ 144 (167)
T 2jsy_A 92 RWCGANGIDKVETLSDH-RDMSFGEAFGVYIKELRLLARSVFVLDE---NGKVVYAE 144 (167)
T ss_dssp CCGGGSSCTTEEEEEGG-GTCHHHHHTTCBBTTTCSBCCEEEEECT---TSCEEEEE
T ss_pred HHHHhcCCCCceEeeCC-chhHHHHHhCCccccCCceeeEEEEEcC---CCcEEEEE
Confidence 777776652222 2231 2367889999986 499999999 99998774
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-19 Score=150.56 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=97.5
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHHH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFN 83 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-----~~~~~~~ 83 (399)
+..+| +++|.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|++| .+.+.+.
T Consensus 17 ~~~~p--~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~ 92 (164)
T 2h30_A 17 PHTMS--TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQ 92 (164)
T ss_dssp HHHHT--TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECTTSTTCCCTTHHH
T ss_pred CCcCC--ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcCCCccccCHHHHH
Confidence 44455 78899999999999999999999999999999999999999999998776 999999985 3567788
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++..++++..++. +.+....+++.|+|.++|+++|+|+ +|+++..
T Consensus 93 ~~~~~~~~~~~~~-~~d~~~~~~~~~~v~~~P~~~lid~---~G~i~~~ 137 (164)
T 2h30_A 93 KWYAGLNYPKLPV-VTDNGGTIAQNLNISVYPSWALIGK---DGDVQRI 137 (164)
T ss_dssp HHHTTSCCTTSCE-EECTTCHHHHHTTCCSSSEEEEECT---TSCEEEE
T ss_pred HHHHhCCCCcceE-EEcCchHHHHHcCCCccceEEEECC---CCcEEEE
Confidence 8888777643333 2233378999999999999999999 9999865
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=155.58 Aligned_cols=121 Identities=19% Similarity=0.203 Sum_probs=98.7
Q ss_pred ccccccccCCeEEec---CCCCEEeccccCCCEEEEEEec-CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 015833 5 QWYVQQLRRRMTSTK---EIGEEVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 80 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d---~~G~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~ 80 (399)
...+|..+|+|++++ .+|++++|++++||+++|+||+ +||++|+.++|.|++++++|++.+ ++|++||.|.. +
T Consensus 47 ~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is~D~~-~ 123 (240)
T 3qpm_A 47 KAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACSVDSQ-F 123 (240)
T ss_dssp SCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCH-H
T ss_pred cCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-H
Confidence 456899999999874 4567999999999999999998 999999999999999999999876 99999999853 4
Q ss_pred HHHHhHhcC-------CCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
...++.+.. ++.+..+.|.+ ..+++.|++. .+|+++|||+ +|+|+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~fp~l~D~~--~~v~~~ygv~~~~~g~~~p~~flID~---~G~I~~~~ 184 (240)
T 3qpm_A 124 THLAWIITPRKQGGLGPMKIPLLSDLT--HQISKDYGVYLEDQGHTLRGLFIIDE---KGVLRQIT 184 (240)
T ss_dssp HHHHHHHSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHHHhhcCCCCCceeEEeCch--HHHHHHhCCccccCCCccceEEEEcC---CCeEEEEE
Confidence 555666543 22111122433 7899999997 6899999999 99998764
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=149.07 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=98.7
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
...+|..+|+|+|+|.+|++++|++++||+++|+|| ++||++|+.++|.|++++++ . ++++++|+.| +.+..+
T Consensus 19 ~l~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~--~~~vv~is~d-~~~~~~ 92 (166)
T 3p7x_A 19 QINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---E--EGIVLTISAD-LPFAQK 92 (166)
T ss_dssp CCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---T--TSEEEEEESS-CHHHHH
T ss_pred cCCCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---C--CCEEEEEECC-CHHHHH
Confidence 446789999999999999999999999999999999 78999999999999999887 3 3999999998 456778
Q ss_pred HhHhcCCC-cccccCChHHHHHHHhhcCCCC------cCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPW-LAVPYSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~-~~~~~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~~G~i~~~~ 133 (399)
++.++++. ....+.|.. ...+.+.|++.. +|+++|||+ +|+|+...
T Consensus 93 ~~~~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~g~~~p~~~liD~---~G~i~~~~ 145 (166)
T 3p7x_A 93 RWCASAGLDNVITLSDHR-DLSFGENYGVVMEELRLLARAVFVLDA---DNKVVYKE 145 (166)
T ss_dssp HHHHHHTCSSCEEEECTT-TCHHHHHHTCEETTTTEECCEEEEECT---TCBEEEEE
T ss_pred HHHHHcCCCceEEccCCc-hhHHHHHhCCccccCCceeeEEEEECC---CCeEEEEE
Confidence 88886554 222222431 268899999975 899999999 99999764
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=147.10 Aligned_cols=119 Identities=12% Similarity=0.163 Sum_probs=99.1
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCC--EEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGK--VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk--~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
...+|..+|+|+++|.+|+++++++++|| +++|+|| ++||++|+.++|.|+++++++++.+ +|++|+.| +.+.
T Consensus 6 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~d-~~~~ 81 (159)
T 2a4v_A 6 ELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSAD-SVTS 81 (159)
T ss_dssp CCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEESC-CHHH
T ss_pred cCCCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeCC-CHHH
Confidence 45679999999999999999999999887 8999997 9999999999999999999998764 89999998 4667
Q ss_pred HHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC------eEEEEcCCCCCCCeeecc
Q 015833 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP------CLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P------~~~lid~~~~~G~i~~~~ 133 (399)
.+++.+++++....+.|. ...+.+.|++...| +.+|| + +|+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~D~--~~~~~~~~gv~~~p~~g~~~~~~li-~---~G~i~~~~ 133 (159)
T 2a4v_A 82 QKKFQSKQNLPYHLLSDP--KREFIGLLGAKKTPLSGSIRSHFIF-V---DGKLKFKR 133 (159)
T ss_dssp HHHHHHHHTCSSEEEECT--TCHHHHHHTCBSSSSSCBCCEEEEE-E---TTEEEEEE
T ss_pred HHHHHHHhCCCceEEECC--ccHHHHHhCCcccccCCccceEEEE-c---CCEEEEEE
Confidence 788888655322222243 26789999999888 88889 9 99998764
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-18 Score=145.53 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=101.1
Q ss_pred ccccccccCCeEEe--cCCC--CEEeccc-cCCCEEEEEEe-cCCCcccH-hhHHHHHHHHHHHhcCCCcEE-EEEEecC
Q 015833 5 QWYVQQLRRRMTST--KEIG--EEVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDFE-VVFVSSD 76 (399)
Q Consensus 5 ~~~~~~~~p~f~l~--d~~G--~~v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~-ii~Vs~D 76 (399)
...+|..+|+|+++ |.+| ++++|++ ++||+++|+|| ++||++|+ .++|.|+++++++++.| ++ |++||.|
T Consensus 3 ~~~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~vv~Is~d 80 (162)
T 1tp9_A 3 PIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEILCISVN 80 (162)
T ss_dssp CCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCEEEEESS
T ss_pred cCCCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECC
Confidence 45689999999986 8999 9999999 89999999999 89999999 99999999999999876 98 9999998
Q ss_pred CChHHHHHhHhcCCCc-ccc-cCChHHHHHHHhhcCCC-----------CcCeEEEEcCCCCCCCeeecc
Q 015833 77 EDLNAFNNYRACMPWL-AVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 77 ~~~~~~~~~~~~~~~~-~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+..+++.++++.. .+| ..|.+ .++++.|++. ..|++++|| +|+|+...
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~~~vid----~G~i~~~~ 143 (162)
T 1tp9_A 81 -DPFVMKAWAKSYPENKHVKFLADGS--ATYTHALGLELDLQEKGLGTRSRRFALLVD----DLKVKAAN 143 (162)
T ss_dssp -CHHHHHHHHHTCTTCSSEEEEECTT--SHHHHHTTCEEEETTTTSEEEECCEEEEEE----TTEEEEEE
T ss_pred -CHHHHHHHHHhcCCCCCeEEEECCC--chHHHHcCcccccccCCCCccceeEEEEEE----CCEEEEEE
Confidence 467788888877641 122 23433 7899999986 389999997 89998764
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=147.63 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=91.6
Q ss_pred cccccCCeEEecCC-CCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 015833 8 VQQLRRRMTSTKEI-GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL 79 (399)
Q Consensus 8 ~~~~~p~f~l~d~~-G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~ 79 (399)
....+|+|+++|.+ |++++|++++||+|||+|||+||++|+ ++|.|++++++|++.| ++||+|+.| .+.
T Consensus 31 ~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d~f~~~e~~~~ 107 (215)
T 2i3y_A 31 EKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCNQFGKQEPGDN 107 (215)
T ss_dssp CCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred ccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEccccCcCCCCCH
Confidence 45679999999999 999999999999999999999999999 9999999999999876 999999976 245
Q ss_pred HHHHHhHh------cCCCcccccCChH--------HHHHHHhh-------c--------------CCCCcCeEEEEcCCC
Q 015833 80 NAFNNYRA------CMPWLAVPYSDLE--------TKKALNRK-------F--------------DIEGIPCLVVLQPYD 124 (399)
Q Consensus 80 ~~~~~~~~------~~~~~~~~~~d~~--------~~~~l~~~-------~--------------~v~~~P~~~lid~~~ 124 (399)
++..+|.+ +++..+..+.+.+ .-..+... + .|...|+.+|||+
T Consensus 108 ~~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~-- 185 (215)
T 2i3y_A 108 KEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGP-- 185 (215)
T ss_dssp HHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECT--
T ss_pred HHHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECC--
Confidence 67888887 6553221122211 01122221 1 2344589999999
Q ss_pred CCCCeeecc
Q 015833 125 DKDDATLHD 133 (399)
Q Consensus 125 ~~G~i~~~~ 133 (399)
+|+++.+.
T Consensus 186 -~G~vv~~~ 193 (215)
T 2i3y_A 186 -DGIPVMRW 193 (215)
T ss_dssp -TSCEEEEE
T ss_pred -CCeEEEEe
Confidence 99998763
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-18 Score=146.31 Aligned_cols=121 Identities=12% Similarity=0.213 Sum_probs=97.6
Q ss_pred ccccccccccCCeEEecCCC--------CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 015833 3 LSQWYVQQLRRRMTSTKEIG--------EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 74 (399)
Q Consensus 3 ~~~~~~~~~~p~f~l~d~~G--------~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs 74 (399)
+....+|..+|+|++++.+| +.+++++++||+++|+||++||++|+.++|.|++++++ .++.++.|+
T Consensus 5 ~~~~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-----~~v~~v~v~ 79 (156)
T 1kng_A 5 IPSALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD-----KRFQLVGIN 79 (156)
T ss_dssp -------CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC-----TTSEEEEEE
T ss_pred hhhHHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc-----CCeEEEEEE
Confidence 34567899999999999999 99999999999999999999999999999999998776 249999999
Q ss_pred cCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 75 SDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.|.+.+.+.++.+++++....+ ..+....+++.|++.++|+++++++ +|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~v~~~P~~~~id~---~G~i~~~ 133 (156)
T 1kng_A 80 YKDAADNARRFLGRYGNPFGRV-GVDANGRASIEWGVYGVPETFVVGR---EGTIVYK 133 (156)
T ss_dssp ESCCHHHHHHHHHHHCCCCSEE-EEETTSHHHHHTTCCSSCEEEEECT---TSBEEEE
T ss_pred CCCCHHHHHHHHHHcCCCCcee-eeCchhHHHHhcCcCccCeEEEEcC---CCCEEEE
Confidence 9999999999998766322101 1122368899999999999999999 9999865
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-18 Score=163.25 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=104.0
Q ss_pred ccccccccCCeE-----EecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC---
Q 015833 5 QWYVQQLRRRMT-----STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--- 76 (399)
Q Consensus 5 ~~~~~~~~p~f~-----l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D--- 76 (399)
...+|..+|+|+ +.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++.+ ++|++|++|
T Consensus 50 ~l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~--v~vi~Vs~d~~~ 127 (352)
T 2hyx_A 50 QLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYA 127 (352)
T ss_dssp SCCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSG
T ss_pred ccCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC--eEEEEEECCccc
Confidence 356788999999 9999999999999999999999999999999999999999999998865 999999976
Q ss_pred --CChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 77 --EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+.+.++++.+++++......|. ...+++.|+|.++|+++|||+ +|+++..
T Consensus 128 ~~d~~~~~~~~~~~~~l~fpv~~D~--~~~l~~~ygV~~~Pt~~lID~---~G~Iv~~ 180 (352)
T 2hyx_A 128 FEKVPGNVAKGAANLGISYPIALDN--NYATWTNYRNRYWPAEYLIDA---TGTVRHI 180 (352)
T ss_dssp GGGCHHHHHHHHHHHTCCSCEEECT--TSHHHHHTTCCEESEEEEECT---TSBEEEE
T ss_pred ccCCHHHHHHHHHHcCCCccEEeCC--cHHHHHHcCCCccCEEEEEeC---CCeEEEE
Confidence 46788899988766322112232 267899999999999999999 9999876
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-18 Score=154.16 Aligned_cols=121 Identities=10% Similarity=0.120 Sum_probs=100.5
Q ss_pred hhhcCCCCccc-CCCCCceeec-ccc--CCcEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPV-SSL--VGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l-~~~--~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|..+|+|++ +.+| .+++ +++ +||++ |++||++||++|..+++.|.+++++|+++ +++|++||
T Consensus 6 ~iG~~aPdF~l~~~~G--~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~---------gv~VI~VS 74 (249)
T 3a2v_A 6 LIGERFPEMEVTTDHG--VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL---------GVDLIGLS 74 (249)
T ss_dssp CTTSBCCCEEEEETTE--EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEE
T ss_pred CCCCCCCCeEEEcCCC--CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC---------CcEEEEEE
Confidence 47899999999 7777 6999 999 99964 55789999999999999999999999876 89999999
Q ss_pred cCCCH--HHHHHHHhcC--CCcccccCCchhHHHHHhCCCC-------ccceEEEECCCCcEEecccc
Q 015833 247 TDRDQ--TSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 247 ~d~~~--~~~~~~~~~~--~~~~~p~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~ 303 (399)
+|... .+|.+.+... ..++||+..|.+..+++.||+. .+|++||||++|+|+....+
T Consensus 75 ~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~ 142 (249)
T 3a2v_A 75 VDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYY 142 (249)
T ss_dssp SSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEec
Confidence 99532 2344433221 1478899999999999999997 89999999999999988543
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-18 Score=146.63 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=94.8
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCC-CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
...+|..+|+|+++|.+|+.+++++++||+++|+||++| |++|+.++|.|++++++ . ++++++|+.|. .+..+
T Consensus 17 ~l~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~--~v~vv~Is~D~-~~~~~ 90 (175)
T 1xvq_A 17 LPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S--GATVLCVSKDL-PFAQK 90 (175)
T ss_dssp CCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T--TCEEEEEESSC-HHHHT
T ss_pred CCCcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c--CCEEEEEECCC-HHHHH
Confidence 346788999999999999999999999999999999999 99999999999999988 3 39999999975 45567
Q ss_pred HhHhcCCC-cccccCChHHHHHHHhhcCCCCc---------CeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPW-LAVPYSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~-~~~~~~d~~~~~~l~~~~~v~~~---------P~~~lid~~~~~G~i~~~~ 133 (399)
++.++.++ ....+.|.. ..+.+.|++... |+++|||+ +|+|+...
T Consensus 91 ~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~g~~~p~~~lid~---~G~I~~~~ 145 (175)
T 1xvq_A 91 RFCGAEGTENVMPASAFR--DSFGEDYGVTIADGPMAGLLARAIVVIGA---DGNVAYTE 145 (175)
T ss_dssp TCC------CEEEEECTT--SSHHHHTTCBBCSSTTTTSBCSEEEEECT---TSBEEEEE
T ss_pred HHHHHcCCCCceEeeCCH--HHHHHHhCCcccccccCCcccceEEEECC---CCeEEEEE
Confidence 77776654 222222432 678899999877 99999999 99999764
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=145.85 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=97.4
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
..+|..+|+|+++|.+|+++++++++||+++|+|| ++||++|+.++|.|+++++++ . ++++++|+.|. .+..++
T Consensus 21 l~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~--~v~vv~Is~d~-~~~~~~ 95 (171)
T 2yzh_A 21 LKVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E--GVDVTVVSMDL-PFAQKR 95 (171)
T ss_dssp CCTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T--TEEEEEEESSC-HHHHHH
T ss_pred CCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C--CceEEEEeCCC-HHHHHH
Confidence 45688999999999999999999999999999999 899999999999999999998 3 39999999985 566788
Q ss_pred hHhcCCC-cccccCChHHHHHHHhhcCCC---------CcCeEEEEcCCCCCCCeeecc
Q 015833 85 YRACMPW-LAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~~~~~-~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.++++. ....+.|. ....+ +.|++. .+|+++|||+ +|+++...
T Consensus 96 ~~~~~~~~~~~~l~D~-~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~---~G~i~~~~ 149 (171)
T 2yzh_A 96 FCESFNIQNVTVASDF-RYRDM-EKYGVLIGEGALKGILARAVFIIDK---EGKVAYVQ 149 (171)
T ss_dssp HHHHTTCCSSEEEECT-TTCGG-GGGTCBBCSSTTTTSBCCEEEEECT---TSBEEEEE
T ss_pred HHHHcCCCCeEEeecC-ccCcH-HHhCCEecccccCCceeeEEEEEcC---CCeEEEEE
Confidence 8887654 22222341 12567 899985 2699999999 99998764
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-17 Score=145.00 Aligned_cols=120 Identities=11% Similarity=-0.054 Sum_probs=90.5
Q ss_pred cccccCCeEEecCC-CCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 015833 8 VQQLRRRMTSTKEI-GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL 79 (399)
Q Consensus 8 ~~~~~p~f~l~d~~-G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~ 79 (399)
....+|+|+++|.+ |++++|++++||+|||+|||+||++| .++|.|++++++|++.| ++||+|+.| .+.
T Consensus 13 ~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d~f~~~e~~~~ 89 (207)
T 2r37_A 13 ISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCNQFGKQEPGEN 89 (207)
T ss_dssp --CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECCCBTTCCCSCH
T ss_pred ccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECcccCcCCCCCH
Confidence 34579999999999 99999999999999999999999999 78999999999999876 999999975 245
Q ss_pred HHHHHhHh------cCCCcccccCChH--------HHHHHHhhc---------------------CCCCcCeEEEEcCCC
Q 015833 80 NAFNNYRA------CMPWLAVPYSDLE--------TKKALNRKF---------------------DIEGIPCLVVLQPYD 124 (399)
Q Consensus 80 ~~~~~~~~------~~~~~~~~~~d~~--------~~~~l~~~~---------------------~v~~~P~~~lid~~~ 124 (399)
+...+|.+ +++..+..+.+.+ .-..+.... .|.+.|+.+|||+
T Consensus 90 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~-- 167 (207)
T 2r37_A 90 SEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGP-- 167 (207)
T ss_dssp HHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECT--
T ss_pred HHHHHHHHhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECC--
Confidence 67888887 6653221122211 001222211 1344589999999
Q ss_pred CCCCeeecc
Q 015833 125 DKDDATLHD 133 (399)
Q Consensus 125 ~~G~i~~~~ 133 (399)
+|+++...
T Consensus 168 -~G~i~~~~ 175 (207)
T 2r37_A 168 -DGIPIMRW 175 (207)
T ss_dssp -TSCEEEEE
T ss_pred -CCcEEEEE
Confidence 99998763
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=153.73 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=98.9
Q ss_pred cccccccccCCeEEe---cCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 4 SQWYVQQLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~---d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
....+|..+|+|+++ |.+|++++|++++||+++|+|| ++||++|+.++|.|++++++|++.+ ++|++|++|..
T Consensus 60 ~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~IS~D~~- 136 (254)
T 3tjj_A 60 SKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDSQ- 136 (254)
T ss_dssp CCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCH-
T ss_pred cccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEcCCCH-
Confidence 345689999999977 4578899999999999999999 9999999999999999999999876 99999999854
Q ss_pred HHHHHhHhcC-------CCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+...++.+.. ++.+..+.|.. ..+++.|++. .+|+++|||+ +|+|+...
T Consensus 137 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~--~~va~~ygv~~~~~g~~~p~tflID~---~G~I~~~~ 198 (254)
T 3tjj_A 137 FTHLAWINTPRRQGGLGPIRIPLLSDLT--HQISKDYGVYLEDSGHTLRGLFIIDD---KGILRQIT 198 (254)
T ss_dssp HHHHHHHTSCGGGTSCCSCSSCEEECTT--SHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHHHHHhcCCcccccceeeCcH--HHHHHHcCCccccCCCccceEEEECC---CCeEEEEE
Confidence 4556666543 22111122433 7899999995 5899999999 99998764
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=144.10 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=98.9
Q ss_pred cccccccccCCeEEe-cCCCCEEeccc-cCCCEEEEEE-ecCCCcccH-hhHHHHHHHHHHHhcCCCcEEEEE-EecCCC
Q 015833 4 SQWYVQQLRRRMTST-KEIGEEVKVSD-LEGKVTALYF-SANWYPPCG-NFTGVLVDVYEELRNNGSDFEVVF-VSSDED 78 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~-d~~G~~v~l~~-~~gk~vlv~F-~a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~ii~-Vs~D~~ 78 (399)
.+..+|..+|+|+|+ +.+|++++|++ ++||+++|+| |++|||+|+ +++|.|++++++|++.| +++|+ ||.|.
T Consensus 13 ~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D~- 89 (173)
T 3mng_A 13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVND- 89 (173)
T ss_dssp CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-
T ss_pred CCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCCC-
Confidence 456789999999999 99999999999 5999666555 599999999 69999999999999887 99997 89874
Q ss_pred hHHHHHhHhcCCCc--ccccCChHHHHHHHhhcCCC-------------CcCeEEEEcCCCCCCCeeeccc
Q 015833 79 LNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIE-------------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 79 ~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-------------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
.+..+++.++.+.. +...+|.+ .++++.||+. ..|+++||| +|+|++...
T Consensus 90 ~~~~~~f~~~~~~~~~fp~l~D~~--~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID----dG~I~~~~v 154 (173)
T 3mng_A 90 AFVTGEWGRAHKAEGKVRLLADPT--GAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ----DGIVKALNV 154 (173)
T ss_dssp HHHHHHHHHHTTCTTTCEEEECTT--CHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE----TTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEECCC--hHHHHHhCCCcccccccccCCcceEEEEEEEE----CCEEEEEEE
Confidence 56778888876643 22233543 7899999885 359999998 899987653
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-18 Score=147.45 Aligned_cols=121 Identities=13% Similarity=0.166 Sum_probs=98.1
Q ss_pred ccccccccCCeEEecC--CC-CEEeccc-cCCCEE-EEEEecCCCcccHh-hHHHHHHHHHHHhcCCCcEE-EEEEecCC
Q 015833 5 QWYVQQLRRRMTSTKE--IG-EEVKVSD-LEGKVT-ALYFSANWYPPCGN-FTGVLVDVYEELRNNGSDFE-VVFVSSDE 77 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~--~G-~~v~l~~-~~gk~v-lv~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~-ii~Vs~D~ 77 (399)
...+|..+|+|+|++. +| ++++|++ ++||++ |++||++|||+|+. ++|.|++++++|++.| ++ |++||.|.
T Consensus 25 ~l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~ 102 (184)
T 3uma_A 25 TIAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVND 102 (184)
T ss_dssp CCCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC
T ss_pred cCCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC
Confidence 4678999999999998 99 9999999 899955 55566999999999 7999999999999887 88 99999974
Q ss_pred ChHHHHHhHhcCCCc--ccccCChHHHHHHHhhcCCC-----------CcCeEEEEcCCCCCCCeeeccc
Q 015833 78 DLNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 78 ~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
.+..+++.++.+.. +...+|.+ .++++.||+. ..|.++|| . +|+|+....
T Consensus 103 -~~~~~~f~~~~~~~~~fp~l~D~~--~~va~~yGv~~~~~~~g~g~~~~r~tfiI-d---dG~I~~~~~ 165 (184)
T 3uma_A 103 -LHVMGAWATHSGGMGKIHFLSDWN--AAFTKAIGMEIDLSAGTLGIRSKRYSMLV-E---DGVVKALNI 165 (184)
T ss_dssp -HHHHHHHHHHHTCTTTSEEEECTT--CHHHHHTTCEEEEGGGTCEEEECCEEEEE-E---TTEEEEEEE
T ss_pred -HHHHHHHHHHhCCCCceEEEEcCc--hHHHHHcCCceeccccCCcccceeEEEEE-C---CCEEEEEEE
Confidence 56778888766543 22233443 7899999985 35889999 5 999987654
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=141.88 Aligned_cols=121 Identities=20% Similarity=0.319 Sum_probs=97.1
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcc-cHhhHHHHHHHHHHHhcCC-CcEEEEEEecCC---ChHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---DLNA 81 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~ii~Vs~D~---~~~~ 81 (399)
..|..+|+|+++|.+| .+++++++||+++|+||++||++ |+.++|.|+++++++++.+ .++++++|++|. +.+.
T Consensus 11 ~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~ 89 (172)
T 2k6v_A 11 LLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEV 89 (172)
T ss_dssp EEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHH
T ss_pred ccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHH
Confidence 4688899999999999 99999999999999999999997 9999999999999987641 249999999984 4577
Q ss_pred HHHhHhcCC--CcccccCChHHHHHHHhhcCC---------------CCcCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNYRACMP--WLAVPYSDLETKKALNRKFDI---------------EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v---------------~~~P~~~lid~~~~~G~i~~~~ 133 (399)
++++.++++ |..+.. +......+.+.|++ .++|+++||| +|+++...
T Consensus 90 ~~~~~~~~~~~~~~l~d-~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid----~G~i~~~~ 153 (172)
T 2k6v_A 90 ADRYAKAFHPSFLGLSG-SPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK----EGRLVLLY 153 (172)
T ss_dssp HHHHHHHHCTTEEEECC-CHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE----TTEEEEEE
T ss_pred HHHHHHHhCCCcEEEeC-CHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE----CCEEEEEE
Confidence 888888655 433332 22222567777664 6889999999 79888654
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-17 Score=147.67 Aligned_cols=119 Identities=13% Similarity=0.250 Sum_probs=97.4
Q ss_pred cccccccCCeEEecCCCCEEeccccCCC-EEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
+.+|..+|+|++++.+| +++|++++|| +++|+|| ++|||+|+.+++.|++++++|++.+ ++||+||+|. .++..
T Consensus 3 l~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D~-~~~~~ 78 (233)
T 2v2g_A 3 ITLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCDN-VADHK 78 (233)
T ss_dssp CCTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHH
T ss_pred CCCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCCC-HHHHH
Confidence 56799999999999999 8999999998 9999998 9999999999999999999999876 9999999985 34555
Q ss_pred HhHh------cC--CCcccccCChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRA------CM--PWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~------~~--~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.+ +. ++.+..+.|. ..++++.|++. .+|+++|||+ +|+|+...
T Consensus 79 ~~~~~i~~~~~~~~~~~fpil~D~--~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~---~G~I~~~~ 143 (233)
T 2v2g_A 79 EWSEDVKCLSGVKGDMPYPIIADE--TRELAVKLGMVDPDERTSTGMPLTCRAVFIIGP---DKKLKLSI 143 (233)
T ss_dssp HHHHHHHHHHTCCSSCSSCEEECT--TCHHHHHTTCEEEEEECTTCCEEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHhhCcccCCceEEEECC--hHHHHHHhCCcCcccccCCCcccccceEEEECC---CCEEEEEE
Confidence 5555 33 3211112243 37889999985 5899999999 99998764
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=145.04 Aligned_cols=120 Identities=12% Similarity=0.174 Sum_probs=94.3
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCC--EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGK--VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
...+|..+|+|++.+.+| +++|++++|| +||++||++||++|+.+++.|++++++|++.+ ++||+||+|.. ++.
T Consensus 4 ~l~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~D~~-~~~ 79 (224)
T 1prx_A 4 GLLLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSV-EDH 79 (224)
T ss_dssp -CCTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCH-HHH
T ss_pred cCCCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH-HHH
Confidence 456799999999999999 9999999998 56666789999999999999999999999876 99999999854 344
Q ss_pred HHhHhc----------CCCcccccCChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRAC----------MPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~----------~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++.+. .++.+..+.|. ..++++.|++. .+|+++|||+ +|+|+...
T Consensus 80 ~~~~~~i~~~~~~~~~~~~~fpil~D~--~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~---~G~I~~~~ 147 (224)
T 1prx_A 80 LAWSKDINAYNSEEPTEKLPFPIIDDR--NRELAILLGMLDPAEKDEKGMPVTARVVFVFGP---DKKLKLSI 147 (224)
T ss_dssp HHHHHHHHHHTTSCCCSCCSSCEEECT--TCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHHhhCcccccCcCcceeecC--chHHHHHhCCCCcccccCCCccccceEEEEECC---CCEEEEEE
Confidence 444442 33211112243 36788999984 4799999999 99998764
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=142.48 Aligned_cols=118 Identities=6% Similarity=0.054 Sum_probs=96.7
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCC-CcccH-----hhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCG-----NFTGVLVDVYEELRNNGSDFEVVFVSSDED 78 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~-----~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~ 78 (399)
...+|..+|+|+|+|.+|++++|++++||+++|+||+.| ||+|. .+++.|+++ + .| ++|++||.| +
T Consensus 21 ~l~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g--v~VvgIS~D-s 92 (224)
T 3keb_A 21 FPRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH--LKLIVITVD-S 92 (224)
T ss_dssp CCCTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT--SEEEEEESS-C
T ss_pred cCCCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC--CEEEEEECC-C
Confidence 456799999999999999999999999999999999888 99999 888888887 3 33 899999998 4
Q ss_pred hHHHHHhHhcCCCc-ccccCChHHHHHHHhhcCCCC---------cCeEEEEcCCCCCCCeeeccc
Q 015833 79 LNAFNNYRACMPWL-AVPYSDLETKKALNRKFDIEG---------IPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~~~d~~~~~~l~~~~~v~~---------~P~~~lid~~~~~G~i~~~~~ 134 (399)
.....++.++++.. +...+|.. ...+++.||+.. .|+++|||+ +|+|++...
T Consensus 93 ~~~~~~f~~~~gl~~fplLsD~~-~~~vak~yGv~~~~~~~~G~~~p~tfvID~---dG~I~~~~~ 154 (224)
T 3keb_A 93 PSSLARARHEHGLPNIALLSTLR-GRDFHKRYGVLITEYPLSGYTSPAIILADA---ANVVHYSER 154 (224)
T ss_dssp HHHHHHHHHHHCCTTCEEEESTT-CTTHHHHTTCBCCSTTSTTCBCCEEEEECT---TCBEEEEEE
T ss_pred HHHHHHHHHHcCCCCceEEEcCC-chHHHHHhCCccccccccCCccCEEEEEcC---CCEEEEEEe
Confidence 56778888876652 22233431 268999999964 799999999 999997654
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=149.96 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=95.4
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 253 (399)
.+|+|+| +.+|+ +++|++++||+|+|+|| +.|||.|..+++.|.+. . ..+++|++||+| +.+.
T Consensus 3 k~p~F~l~~~~G~-~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~---------~~~~~v~gis~D-~~~~ 67 (322)
T 4eo3_A 3 RVKHFELLTDEGK-TFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----N---------FEKAQVVGISRD-SVEA 67 (322)
T ss_dssp BCCCCEEEETTSC-EEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----C---------CTTEEEEEEESC-CHHH
T ss_pred CCCCcEEECCCcC-EEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----h---------hCCCEEEEEeCC-CHHH
Confidence 5899999 99999 99999999999999999 56999999998876531 1 237999999998 6677
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhCCC----CccceEEEECCCCcEEecc
Q 015833 254 FESYFGTMPWLALPFGDPTIKELTKYFDV----QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 254 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~v----~~~P~~~lid~~G~i~~~~ 301 (399)
.++|.++++ ++||++.|.+..+++.||| ..+|++||||++|+|+...
T Consensus 68 ~~~f~~~~~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~ 118 (322)
T 4eo3_A 68 LKRFKEKND-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEW 118 (322)
T ss_dssp HHHHHHHHT-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEE
T ss_pred HHHHHHhhC-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEE
Confidence 888888777 7899999999999999999 4588999999999998653
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=143.15 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=93.5
Q ss_pred cccccccCCeEEecC--CCCEEeccccCCC--EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 6 WYVQQLRRRMTSTKE--IGEEVKVSDLEGK--VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~--~G~~v~l~~~~gk--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
..+|..+|+|++.+. +| +++|++++|| .||++||++||++|+.+++.|++++++|++.+ ++||+||+|.. ++
T Consensus 3 l~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS~D~~-~~ 78 (220)
T 1xcc_A 3 YHLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSK-ES 78 (220)
T ss_dssp CCTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HH
T ss_pred CCCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCH-HH
Confidence 567999999999999 99 8999999998 55555689999999999999999999999876 99999999853 34
Q ss_pred HHHhHh-------cCCCcccccCChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNYRA-------CMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~~~-------~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~~~~ 133 (399)
..++.+ +.++.+..+.|. ...+++.|++. .+|+++|||+ +|+|+...
T Consensus 79 ~~~~~~~i~~~~~~~~~~fpil~D~--~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~---~G~I~~~~ 144 (220)
T 1xcc_A 79 HDKWIEDIKYYGKLNKWEIPIVCDE--SRELANKLKIMDEQEKDITGLPLTCRCLFFISP---EKKIKATV 144 (220)
T ss_dssp HHHHHHHHHHHHTCSCCCCCEEECT--TSHHHHHHTCEEEEEECTTSCEEECEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHHHHhcCCCCcceeEECc--hhHHHHHhCCCCcccccCCCCCcccceEEEECC---CCEEEEEE
Confidence 444443 233211112243 37788999983 4799999999 99998764
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-17 Score=139.43 Aligned_cols=118 Identities=12% Similarity=0.223 Sum_probs=94.2
Q ss_pred ccccccCCeEEecC----CC-----CEEecccc-CCC-EEEEEEecCCCcccHhh-HHHHHHHHHHHhcCCCcEE-EEEE
Q 015833 7 YVQQLRRRMTSTKE----IG-----EEVKVSDL-EGK-VTALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDFE-VVFV 73 (399)
Q Consensus 7 ~~~~~~p~f~l~d~----~G-----~~v~l~~~-~gk-~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~-ii~V 73 (399)
.+|..+|+|++++. +| ++++|+++ +|| +||++||++|||+|+.+ +|.|+++++++++.| ++ |++|
T Consensus 8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv~I 85 (171)
T 2pwj_A 8 DILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVICV 85 (171)
T ss_dssp --CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEEEE
T ss_pred cccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEE
Confidence 34669999999998 57 89999996 996 67778999999999999 999999999999876 88 9999
Q ss_pred ecCCChHHHHHhHhcCCC-cccc-cCChHHHHHHHhhcCCCC-----------cCeEEEEcCCCCCCCeeecc
Q 015833 74 SSDEDLNAFNNYRACMPW-LAVP-YSDLETKKALNRKFDIEG-----------IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 74 s~D~~~~~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~~-----------~P~~~lid~~~~~G~i~~~~ 133 (399)
|.|. .+..+++.+++++ ..+| ++|. ..++++.|++.. .|+.++|+ +|+|++..
T Consensus 86 s~d~-~~~~~~~~~~~~~~~~fp~l~D~--~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~----~G~I~~~~ 151 (171)
T 2pwj_A 86 AIND-PYTVNAWAEKIQAKDAIEFYGDF--DGSFHKSLELTTDLSAGLLGIRSERWSAYVV----DGKVKALN 151 (171)
T ss_dssp ESSC-HHHHHHHHHHTTCTTTSEEEECT--TCHHHHHHTCEEECTTTTCCEEECCEEEEEE----TTEEEEEE
T ss_pred eCCC-HHHHHHHHHHhCCCCceEEEECC--ccHHHHHhCCccccccccCCcccceeEEEEE----CCEEEEEE
Confidence 9974 5677888887774 2233 2344 378889998853 56788887 79988764
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-16 Score=122.36 Aligned_cols=81 Identities=33% Similarity=0.679 Sum_probs=73.8
Q ss_pred cccCCCCChHHHHHHHHHHHHHhccCCCccccccc-ccceeeeecCCCCCCeecCCCCCCCCceeEEcCCCCCCCcCccc
Q 015833 310 QENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCV 388 (399)
Q Consensus 310 g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~C~~~~~~w~~~c~~c~~~~~~~~~ 388 (399)
|++||||+++++.+|.+.+.+.-..+|..+.+..| +|.+.+... ..++|+.|.+.+.+|.|+|.+|+|+||+.||
T Consensus 1 ~~~a~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~----~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca 76 (89)
T 1v5n_A 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRV----QVYTCDKCEEEGTIWSYHCDECDFDLHAKCA 76 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECC----SSCCCTTTSCCCCSCEEECTTTCCCCCHHHH
T ss_pred CCcccccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEeeC----CCeEeCCCCCcCCCcEEEcCCCCCeEcHHhc
Confidence 67899999999999999999999999999999999 599888542 3799999999999999999999999999999
Q ss_pred cccCCC
Q 015833 389 RAVDRG 394 (399)
Q Consensus 389 ~~~~~~ 394 (399)
+.+..+
T Consensus 77 ~~p~~~ 82 (89)
T 1v5n_A 77 LNEDTK 82 (89)
T ss_dssp HCSSCS
T ss_pred CCCCcc
Confidence 987764
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-16 Score=142.11 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=93.9
Q ss_pred cccccccCCeEEecCCCCEEec-ccc--CCCEE-EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKV-SDL--EGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l-~~~--~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
..+|..+|+|++.+.+| ++++ +++ +||++ |++||++||++|+.+++.|++++++|++.+ ++|++||+|.. .+
T Consensus 5 ~~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS~Ds~-~~ 80 (249)
T 3a2v_A 5 PLIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSV-FS 80 (249)
T ss_dssp CCTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCH-HH
T ss_pred CCCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEECCCH-HH
Confidence 45799999999999999 7999 999 99965 567899999999999999999999999876 99999999854 33
Q ss_pred HHHhHhc------CCCcccccCChHHHHHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNYRAC------MPWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~~~~------~~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
..++.+. .++.+..+.|. ...+++.|++. .+|+++|||+ +|+++...
T Consensus 81 ~~~w~~~~~~~~~~~i~fPil~D~--~~~ia~~ygv~~~~~g~~~~p~~fIID~---dG~I~~~~ 140 (249)
T 3a2v_A 81 HIKWKEWIERHIGVRIPFPIIADP--QGTVARRLGLLHAESATHTVRGVFIVDA---RGVIRTML 140 (249)
T ss_dssp HHHHHHHHHHHTCCCCCSCEEECT--TSHHHHHHTCCCTTCSSSCCEEEEEECT---TSBEEEEE
T ss_pred HHHHHHHHHHhcCCCCceeEEECC--chHHHHHhCCccccCCCcccceEEEECC---CCeEEEEE
Confidence 3333321 22211112243 37899999997 8999999999 99998764
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8e-16 Score=137.44 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=97.6
Q ss_pred CCccccccccccCCeE----EecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 1 MSLSQWYVQQLRRRMT----STKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 1 ~~~~~~~~~~~~p~f~----l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
|+.....+|..||+|+ ++|.+|++++|++++||+++|+|| +.|||.|..++..+++++++|++.| ++|++||.
T Consensus 21 m~~~~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~ 98 (219)
T 3tue_A 21 MSCGNAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSI 98 (219)
T ss_dssp ---CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEES
T ss_pred CcccccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeC
Confidence 5566678999999999 668899999999999999999999 9999999999999999999999887 99999999
Q ss_pred CCChHHHHHhHhc----CCCcccccC-ChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 76 DEDLNAFNNYRAC----MPWLAVPYS-DLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 76 D~~~~~~~~~~~~----~~~~~~~~~-d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
|.. .+..++.++ .....++|. ..+...++++.||+- ....++|||+ +|+|...
T Consensus 99 Ds~-~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp---~g~Ir~~ 162 (219)
T 3tue_A 99 DSE-YAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDP---HGMLRQI 162 (219)
T ss_dssp SCH-HHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred Cch-hhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECC---CCeEEEE
Confidence 954 344444432 122222222 122338999999983 2468999999 9998754
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=120.77 Aligned_cols=72 Identities=24% Similarity=0.472 Sum_probs=62.4
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
..+|+|+|+|||+||++|+.+.|.+.++++.+. ++.++.|++|.. .
T Consensus 18 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~d~~-----------------------~ 63 (105)
T 3zzx_A 18 AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-----------DVVFLKVDVDEC-----------------------E 63 (105)
T ss_dssp TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEEETTTC-----------------------H
T ss_pred cCCCEEEEEEECCCCCCccCCCcchhhhhhccC-----------CeEEEEEecccC-----------------------H
Confidence 346899999999999999999999999987764 467777777754 7
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++++.|+|+++||++++ ++|+++.+.
T Consensus 64 ~l~~~~~V~~~PT~~~~-~~G~~v~~~ 89 (105)
T 3zzx_A 64 DIAQDNQIACMPTFLFM-KNGQKLDSL 89 (105)
T ss_dssp HHHHHTTCCBSSEEEEE-ETTEEEEEE
T ss_pred HHHHHcCCCeecEEEEE-ECCEEEEEE
Confidence 89999999999999999 899999874
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=135.77 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=95.8
Q ss_pred cccccccCCeEEe---cCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 6 WYVQQLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 6 ~~~~~~~p~f~l~---d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
..+|+.||+|+++ |.+|++++|++++||+++|+|| +.|||.|..+++.|++.+++|++.| ++|++||.|.. .+
T Consensus 23 ~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vigiS~Ds~-~s 99 (216)
T 3sbc_A 23 AQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLFASTDSE-YS 99 (216)
T ss_dssp CCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCH-HH
T ss_pred hhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEEeecCch-hh
Confidence 4689999999976 7788899999999999999999 9999999999999999999999987 99999999853 34
Q ss_pred HHHhHhcC----CCcccccC-ChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 82 FNNYRACM----PWLAVPYS-DLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 82 ~~~~~~~~----~~~~~~~~-d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
..++.+.. ....++|. ..+...++++.||+- ..+.++|||+ +|+|...
T Consensus 100 h~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~---~G~Ir~~ 158 (216)
T 3sbc_A 100 LLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDP---KGVIRHI 158 (216)
T ss_dssp HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred HHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECC---CCeEEEE
Confidence 44444322 11112221 122338999999983 4689999999 9999765
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=125.25 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=75.0
Q ss_pred CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 015833 183 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 262 (399)
Q Consensus 183 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 262 (399)
+.+|. ...++.++|++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.+
T Consensus 38 ~~~~~-~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~------------ 94 (141)
T 3hxs_A 38 DYENH-SKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG----------KIYIYKVNVDKE------------ 94 (141)
T ss_dssp CCSSC-CCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC------------
T ss_pred ccccc-hhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------ceEEEEEECCCC------------
Confidence 67777 8889999999999999999999999999999999998864 378888888865
Q ss_pred CcccccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 263 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 263 ~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+++.|+|.++|+++++|++|+++..
T Consensus 95 -----------~~~~~~~~v~~~Pt~~~~~~~g~~~~~ 121 (141)
T 3hxs_A 95 -----------PELARDFGIQSIPTIWFVPMKGEPQVN 121 (141)
T ss_dssp -----------HHHHHHTTCCSSSEEEEECSSSCCEEE
T ss_pred -----------HHHHHHcCCCCcCEEEEEeCCCCEEEE
Confidence 678999999999999999999998744
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=123.48 Aligned_cols=93 Identities=13% Similarity=0.206 Sum_probs=74.5
Q ss_pred CCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 015833 177 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 255 (399)
.++++. +.+|. .......+||+++|+||++||++|+.+.|.|.+++++++. ++.++.|++|.+.
T Consensus 6 ~~~l~~~~~~~~-~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~----------~v~~~~v~~~~d~---- 70 (126)
T 2l57_A 6 IKQINFQSINVV-ENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG----------KFNIYYARLEEEK---- 70 (126)
T ss_dssp SSCTTTTCCSEE-SSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS----------SCEEEEEETTSSH----
T ss_pred cCCCCccccchh-HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC----------CeEEEEEeCCCCc----
Confidence 345555 55554 4445556789999999999999999999999999988752 5889999844222
Q ss_pred HHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 256 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 256 ~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+..+++.|+|.++|+++++|++|+++.+.
T Consensus 71 -----------------~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~ 99 (126)
T 2l57_A 71 -----------------NIDLAYKYDANIVPTTVFLDKEGNKFYVH 99 (126)
T ss_dssp -----------------HHHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred -----------------hHHHHHHcCCcceeEEEEECCCCCEEEEe
Confidence 37899999999999999999999998763
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.9e-16 Score=139.85 Aligned_cols=139 Identities=21% Similarity=0.301 Sum_probs=93.9
Q ss_pred CCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 015833 184 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 263 (399)
Q Consensus 184 ~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 263 (399)
.+++ .+.....+|++++|+|||+||++|+.+.|.|.++++++++. +.++.++.|++|.+
T Consensus 20 l~~~-~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~------------- 78 (241)
T 3idv_A 20 LNDA-NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDK-------DPPIPVAKIDATSA------------- 78 (241)
T ss_dssp ECTT-THHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS-------SSCCCEEEEETTTC-------------
T ss_pred eccc-CHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhc-------CCceEEEEEeccCC-------------
Confidence 3444 44433446899999999999999999999999999999865 33477888877755
Q ss_pred cccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccC----CCcc
Q 015833 264 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL----PRSE 339 (399)
Q Consensus 264 ~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~----~~~~ 339 (399)
..+++.|+|.++||++++ ++|+++...|. .+. +.|.+.+.+..... +...
T Consensus 79 ----------~~l~~~~~v~~~Pt~~~~-~~g~~~~~~g~------------~~~---~~l~~~i~~~~~~~~~~~~~~~ 132 (241)
T 3idv_A 79 ----------SVLASRFDVSGYPTIKIL-KKGQAVDYEGS------------RTQ---EEIVAKVREVSQPDWTPPPEVT 132 (241)
T ss_dssp ----------HHHHHHTTCCSSSEEEEE-ETTEEEECCSC------------SCH---HHHHHHHHHHHSTTCCCCCCSS
T ss_pred ----------HHHHHhcCCCcCCEEEEE-cCCCcccccCc------------ccH---HHHHHHHhhccCcccccccccc
Confidence 689999999999999999 57777654332 222 44555555544321 1111
Q ss_pred cc--------cccccceeeeecCCCCCCeecCCCCCCCCcee
Q 015833 340 FH--------IGHRHELNLVSEGTGGGPFICCDCDEQGSGWA 373 (399)
Q Consensus 340 ~~--------~~~~~~~~~~~~~~~~~~~~c~~C~~~~~~w~ 373 (399)
.. ....+.. .+..+.++||++|+++.|.|.
T Consensus 133 ~~~~~~~~~~~~~~~~~----~~v~f~a~wC~~C~~~~p~~~ 170 (241)
T 3idv_A 133 LVLTKENFDEVVNDADI----ILVEFYAPWCGHCKKLAPEYE 170 (241)
T ss_dssp EECCTTTHHHHHHHCSE----EEEEEECTTCTGGGGTHHHHH
T ss_pred eeccHHHHHHhhccCCe----EEEEEECCCCHHHHHhHHHHH
Confidence 10 0011222 235567899999998877653
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-14 Score=129.42 Aligned_cols=70 Identities=21% Similarity=0.389 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+|||+||++|+.+.|.+.++++++++.+..+.++.|+++.+ ....++++|+
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~----------------------~~~~l~~~~~ 86 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEE----------------------TNSAVCRDFN 86 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTST----------------------TTHHHHHHTT
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCch----------------------hhHHHHHHcC
Confidence 459999999999999999999999999999987434599999987533 1278999999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++++
T Consensus 87 v~~~Pt~~~~~~ 98 (244)
T 3q6o_A 87 IPGFPTVRFFXA 98 (244)
T ss_dssp CCSSSEEEEECT
T ss_pred CCccCEEEEEeC
Confidence 999999999995
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=126.68 Aligned_cols=96 Identities=18% Similarity=0.326 Sum_probs=75.8
Q ss_pred hhhcCCCCcc-c-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYL-L-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~-l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
..+..+|+|. + +.++. ...+++.+||+++|+||++||++|+.+.|.+ .++.++++ ++.++.|+
T Consensus 5 ~~~~~~~~f~~~~~~~~~-~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-----------~~~~~~vd 72 (134)
T 2fwh_A 5 AQTQTHLNFTQIKTVDEL-NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----------DTVLLQAN 72 (134)
T ss_dssp -----CCCCEECCSHHHH-HHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-----------TSEEEEEE
T ss_pred cccccCCCcEEecCHHHH-HHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-----------CcEEEEEe
Confidence 4566788887 4 55555 6677777899999999999999999999988 77777664 47888998
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 247 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++... +....+++.|+|.++|+++++|++|+++
T Consensus 73 ~~~~~-------------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 73 VTAND-------------------AQDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp CTTCC-------------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred CCCCc-------------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 87531 2357899999999999999999999998
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=119.66 Aligned_cols=91 Identities=14% Similarity=0.374 Sum_probs=75.0
Q ss_pred CCCCcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 015833 176 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255 (399)
Q Consensus 176 ~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 255 (399)
+.|++. ..+++ .++....+||+++|+||++||++|+.+.|.|.++++++++ ++.++.|++|..
T Consensus 23 ~~~~~~-~~~~~-~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~----------~v~~~~vd~d~~----- 85 (128)
T 3ul3_B 23 KVPRLQ-QNGSN-IINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK----------RIYLLKVDLDKN----- 85 (128)
T ss_dssp ---CCC-CCCCS-SSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG----------GEEEEEEEGGGC-----
T ss_pred cCCccc-cCCcc-HHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC----------CeEEEEEECCCC-----
Confidence 456655 44555 6777778899999999999999999999999999999875 388888888755
Q ss_pred HHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 256 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 256 ~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
..+++.|+|.++|+++++ ++|+++.+..
T Consensus 86 ------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~ 113 (128)
T 3ul3_B 86 ------------------ESLARKFSVKSLPTIILL-KNKTMLARKD 113 (128)
T ss_dssp ------------------HHHHHHTTCCSSSEEEEE-ETTEEEEEES
T ss_pred ------------------HHHHHHcCCCCcCEEEEE-ECCEEEEEec
Confidence 688999999999999999 7999887643
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-15 Score=129.53 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=97.6
Q ss_pred hhcCCCCccc---CC-------CC-Cceeecccc-CCcEE-EEEEecCCChhhhh-hHHHHHHHHHHHHhhhhhcCCCCC
Q 015833 173 LTNHDRGYLL---GH-------PP-DEKVPVSSL-VGKTV-GLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALE 238 (399)
Q Consensus 173 ~g~~~p~f~l---~~-------~g-~~~~~l~~~-~gk~v-ll~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~ 238 (399)
+|++.|+.++ +. ++ + .++++++ +||++ |++||+.|||.|.. ++|.+.+.+++|+++
T Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~~-~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~--------- 81 (176)
T 4f82_A 12 VGDALPDAQLFEFIDDAREGCTLGPN-ACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA--------- 81 (176)
T ss_dssp TTCBCCCCEEEEEECSCCTTCCSEEE-EEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT---------
T ss_pred cCCcCCceEEEEecccccccccCCce-EEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC---------
Confidence 6889999877 22 11 4 7899997 99865 45666899999999 999999999999977
Q ss_pred CE-EEEEEecCCCHHHHHHHHhcCCCc-ccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEeccc
Q 015833 239 DF-EVVFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 239 ~~-~vv~is~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 302 (399)
++ +|++||+| +....+++.++.+.. .||++.|.+.++++.||+. ..|++||| ++|+|++...
T Consensus 82 g~d~VigIS~D-~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~ 156 (176)
T 4f82_A 82 GIDEIWCVSVN-DAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAV 156 (176)
T ss_dssp TCCEEEEEESS-CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEE
T ss_pred CCCEEEEEeCC-CHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEE
Confidence 89 99999999 567788888877632 4999999999999999983 24889999 9999998753
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=120.54 Aligned_cols=113 Identities=17% Similarity=0.287 Sum_probs=85.0
Q ss_pred cCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 015833 175 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253 (399)
Q Consensus 175 ~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 253 (399)
.+.++..+ +.+++ .+......+++++|+||++||++|+.+.|.|+++++++.+ ++.++.|++|.+
T Consensus 33 ~~~~~~~v~~l~~~-~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~----------~~~~~~vd~~~~--- 98 (148)
T 3p2a_A 33 HSLFDGEVINATAE-TLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG----------KVRFVKVNTEAE--- 98 (148)
T ss_dssp CBTTCCCCEECCTT-THHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC---
T ss_pred CccccCCceecCHH-HHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC----------ceEEEEEECcCC---
Confidence 34455555 66666 5554445689999999999999999999999999998864 478888888755
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhc
Q 015833 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 333 (399)
Q Consensus 254 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 333 (399)
..+++.|+|.++|+++++ ++|+++.+.. |. .+ .+.|.+.|++.+.
T Consensus 99 --------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~-------G~----~~---~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 99 --------------------PALSTRFRIRSIPTIMLY-RNGKMIDMLN-------GA----VP---KAPFDNWLDEQLS 143 (148)
T ss_dssp --------------------HHHHHHTTCCSSSEEEEE-ETTEEEEEES-------SC----CC---HHHHHHHHHHHHH
T ss_pred --------------------HHHHHHCCCCccCEEEEE-ECCeEEEEEe-------CC----CC---HHHHHHHHHHHhc
Confidence 678999999999999999 7999887632 21 12 3556666666665
Q ss_pred cCC
Q 015833 334 NLP 336 (399)
Q Consensus 334 ~~~ 336 (399)
..|
T Consensus 144 ~~~ 146 (148)
T 3p2a_A 144 RDP 146 (148)
T ss_dssp SCC
T ss_pred ccC
Confidence 443
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-15 Score=125.72 Aligned_cols=91 Identities=24% Similarity=0.415 Sum_probs=71.4
Q ss_pred eeeccccCCcEEEEEEe-cCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCc
Q 015833 189 KVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL 264 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 264 (399)
.++++..+||+++|+|| ++||++|+.+.|.| .++.+.+.. ++.++.|+++.... +
T Consensus 39 ~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~----------~~~~v~vd~~~~~~-----------~ 97 (154)
T 2ju5_A 39 ALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV----------HLHMVEVDFPQKNH-----------Q 97 (154)
T ss_dssp HHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH----------HCEEEEEECCSSCC-----------C
T ss_pred HHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC----------cEEEEEecCccccC-----------C
Confidence 56667778999999999 99999999999999 677555543 47788888775420 1
Q ss_pred ccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 265 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 265 ~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++ .+....+++.|+|.++|+++|+|++|+++.+.
T Consensus 98 ~~~~-~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~ 133 (154)
T 2ju5_A 98 PEEQ-RQKNQELKAQYKVTGFPELVFIDAEGKQLARM 133 (154)
T ss_dssp CHHH-HHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred Chhh-HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe
Confidence 1221 24467899999999999999999999999874
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=137.01 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=89.9
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
+.+|+|+|+|.+|++++|++++||+|+|+|| +.|||.|..+++.|++. ...+++|++||.| +.++.++|.++
T Consensus 2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~------~~~~~~v~gis~D-~~~~~~~f~~~ 74 (322)
T 4eo3_A 2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE------NFEKAQVVGISRD-SVEALKRFKEK 74 (322)
T ss_dssp CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS------CCTTEEEEEEESC-CHHHHHHHHHH
T ss_pred CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH------hhCCCEEEEEeCC-CHHHHHHHHHh
Confidence 4689999999999999999999999999999 77999999999887641 2235999999997 45677788887
Q ss_pred CCCcccccCChHHHHHHHhhcCC----CCcCeEEEEcCCCCCCCeeec
Q 015833 89 MPWLAVPYSDLETKKALNRKFDI----EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 89 ~~~~~~~~~d~~~~~~l~~~~~v----~~~P~~~lid~~~~~G~i~~~ 132 (399)
++..+...+|.+ .++++.||| ..+|++++||+ +|+|++.
T Consensus 75 ~~l~fp~l~D~~--~~v~~~ygv~~~~~~~r~tfiId~---~G~i~~~ 117 (322)
T 4eo3_A 75 NDLKVTLLSDPE--GILHEFFNVLENGKTVRSTFLIDR---WGFVRKE 117 (322)
T ss_dssp HTCCSEEEECTT--CHHHHHTTCEETTEECCEEEEECT---TSBEEEE
T ss_pred hCCceEEEEcCc--hHHHHhcCCCCCCcCccEEEEECC---CCEEEEE
Confidence 664332334543 789999999 45889999999 9999753
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=117.04 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=67.2
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHH--HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLL--SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~--~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..||+++|+||++||++|+.+.|.|. ++.+++.+. +.++.|+++.. +.
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~----------~~~~~vd~~~~--------------------~~ 76 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH----------FEVVKIDVGNF--------------------DR 76 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH----------CEEEEEECTTT--------------------TS
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC----------EEEEEEeCCcc--------------------cc
Confidence 35889999999999999999999999 999988654 78999988421 11
Q ss_pred hHHHHHhCCC---CccceEEEECCCCcEEecccc
Q 015833 273 IKELTKYFDV---QGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 273 ~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~~ 303 (399)
...+++.|+| .++|+++++|++|+++.+..+
T Consensus 77 ~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g 110 (133)
T 3fk8_A 77 NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKG 110 (133)
T ss_dssp SHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCS
T ss_pred hHHHHHHhCCccCCccceEEEECCCCCEEEEecC
Confidence 3789999999 999999999999999987544
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=118.59 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=74.1
Q ss_pred EecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCccccc
Q 015833 17 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 96 (399)
Q Consensus 17 l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~ 96 (399)
+.+.+|..+.++.++||+++|+||++||++|+.+.|.|.++++.+++. +.++.|++|..
T Consensus 36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------ 94 (141)
T 3hxs_A 36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKE------------------ 94 (141)
T ss_dssp TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------
T ss_pred hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCC------------------
Confidence 456778888888899999999999999999999999999999998753 88888877644
Q ss_pred CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 97 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 97 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
..+++.|+|.++|+++++++ +|+++
T Consensus 95 ------~~~~~~~~v~~~Pt~~~~~~---~g~~~ 119 (141)
T 3hxs_A 95 ------PELARDFGIQSIPTIWFVPM---KGEPQ 119 (141)
T ss_dssp ------HHHHHHTTCCSSSEEEEECS---SSCCE
T ss_pred ------HHHHHHcCCCCcCEEEEEeC---CCCEE
Confidence 67899999999999999998 88876
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-14 Score=142.07 Aligned_cols=70 Identities=20% Similarity=0.394 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+|||+||++|+.++|.|.++++++++.+..+.++.|++|.+ ...+++++|+
T Consensus 29 ~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d----------------------~~~~l~~~~~ 86 (519)
T 3t58_A 29 SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEE----------------------TNSAVCREFN 86 (519)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSG----------------------GGHHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcc----------------------ccHHHHHHcC
Confidence 469999999999999999999999999999987434599999987532 1278999999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++++
T Consensus 87 V~~~PTl~~f~~ 98 (519)
T 3t58_A 87 IAGFPTVRFFQA 98 (519)
T ss_dssp CCSBSEEEEECT
T ss_pred CcccCEEEEEcC
Confidence 999999999985
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=124.64 Aligned_cols=118 Identities=14% Similarity=0.254 Sum_probs=98.1
Q ss_pred hhhcCCCCccc-CCCC-Cceeeccc-cCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEE-EEEEe
Q 015833 172 LLTNHDRGYLL-GHPP-DEKVPVSS-LVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE-VVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g-~~~~~l~~-~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-vv~is 246 (399)
.+|..+|+|++ +.++ + .+++++ ++||+++|+|| +.|||.|..+++.+.+.+++|++. +++ |++||
T Consensus 15 ~vGd~aPdf~l~~~g~~~-~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~---------gv~~VigIS 84 (171)
T 2xhf_A 15 KVGDIIPDVLVYEDVPSK-SFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEE---------GYHTIACIA 84 (171)
T ss_dssp CTTCBCCCCEEECSSTTC-EEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHT---------TCCEEEEEE
T ss_pred cCcCCCCCeEEecCCCCc-EEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCCEEEEEe
Confidence 47999999999 5442 7 999999 59999999999 469999999999999999999876 885 99999
Q ss_pred cCCCHHHHHHHHhcCCC-cccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEecc
Q 015833 247 TDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~ 301 (399)
+| +....+++.++.+. ..+|++.|.+.++++.||+. ....+|||| +|+|++..
T Consensus 85 ~D-~~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~ 149 (171)
T 2xhf_A 85 VN-DPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS 149 (171)
T ss_dssp SS-CHHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred CC-CHHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence 99 55666666665542 27899999999999999973 245789998 99999875
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=116.10 Aligned_cols=90 Identities=18% Similarity=0.372 Sum_probs=73.6
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
..+|++. +.+++.++....+||+++|+||++||++|+.+.|.|.+++++++++ +.++.|+.|..
T Consensus 22 ~~~~~~~--~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~----------- 85 (128)
T 3ul3_B 22 KKVPRLQ--QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKN----------- 85 (128)
T ss_dssp ----CCC--CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGC-----------
T ss_pred ccCCccc--cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC-----------
Confidence 4456665 5666777778889999999999999999999999999999999753 89998877544
Q ss_pred CCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 90 PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 90 ~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..++++|+|.++|+++++ + +|+++.+
T Consensus 86 -------------~~l~~~~~v~~~Pt~~~~-~---~G~~~~~ 111 (128)
T 3ul3_B 86 -------------ESLARKFSVKSLPTIILL-K---NKTMLAR 111 (128)
T ss_dssp -------------HHHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred -------------HHHHHHcCCCCcCEEEEE-E---CCEEEEE
Confidence 688999999999999999 5 8887754
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=112.29 Aligned_cols=71 Identities=24% Similarity=0.454 Sum_probs=62.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..
T Consensus 23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~ 68 (109)
T 3f3q_A 23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-----------QADFYKLDVDEL-----------------------GD 68 (109)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------HH
Confidence 47999999999999999999999999988874 467888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|++++++ +|+++.+.
T Consensus 69 l~~~~~v~~~Pt~~~~~-~G~~~~~~ 93 (109)
T 3f3q_A 69 VAQKNEVSAMPTLLLFK-NGKEVAKV 93 (109)
T ss_dssp HHHHTTCCSSSEEEEEE-TTEEEEEE
T ss_pred HHHHcCCCccCEEEEEE-CCEEEEEE
Confidence 89999999999999995 99988773
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-14 Score=117.16 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=61.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|||.|||+||++|+.+.|.|+++++++.++ +.|+-|++|.. .++
T Consensus 41 ~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~----------v~f~kVDVDe~-----------------------~e~ 87 (160)
T 2av4_A 41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF----------CVIYLVDITEV-----------------------PDF 87 (160)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTC-----------------------CTT
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCC----------cEEEEEECCCC-----------------------HHH
Confidence 589999999999999999999999999999754 77888888855 678
Q ss_pred HHhCCCCccceEEEECCCCcEE
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+..|+|.++||+++| ++|+.+
T Consensus 88 a~~y~V~siPT~~fF-k~G~~v 108 (160)
T 2av4_A 88 NTMYELYDPVSVMFF-YRNKHM 108 (160)
T ss_dssp TTTTTCCSSEEEEEE-ETTEEE
T ss_pred HHHcCCCCCCEEEEE-ECCEEE
Confidence 999999999999999 889887
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=114.60 Aligned_cols=72 Identities=28% Similarity=0.504 Sum_probs=63.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.+ ..
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~ 83 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDG----------QIVIYKVDTEKE-----------------------QE 83 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC----------CEEEEEEeCCCC-----------------------HH
Confidence 368999999999999999999999999988864 478888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.|+|.++|+++++|++|+++..
T Consensus 84 l~~~~~v~~~Pt~~~~~~~G~~~~~ 108 (136)
T 2l5l_A 84 LAGAFGIRSIPSILFIPMEGKPEMA 108 (136)
T ss_dssp HHHHTTCCSSCEEEEECSSSCCEEE
T ss_pred HHHHcCCCCCCEEEEECCCCcEEEE
Confidence 8999999999999999999998743
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-14 Score=114.14 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=62.8
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
.++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. .
T Consensus 29 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~ 74 (116)
T 3qfa_C 29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC-----------------------Q 74 (116)
T ss_dssp HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT-----------TSEEEEEETTTT-----------------------H
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------H
Confidence 368999999999999999999999999887764 478888888754 6
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++.|+|.++|+++++ ++|+++.+.
T Consensus 75 ~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 100 (116)
T 3qfa_C 75 DVASECEVKSMPTFQFF-KKGQKVGEF 100 (116)
T ss_dssp HHHHHTTCCSSSEEEEE-SSSSEEEEE
T ss_pred HHHHHcCCccccEEEEE-eCCeEEEEE
Confidence 89999999999999999 899988773
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-14 Score=117.69 Aligned_cols=94 Identities=22% Similarity=0.427 Sum_probs=75.4
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
.+|++++|+||++||++|+.+.|.|+++++++. ++.++.|++|.. .
T Consensus 44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----------~v~~~~v~~~~~-----------------------~ 89 (139)
T 3d22_A 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP-----------SLMFLVIDVDEL-----------------------S 89 (139)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------H
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEeCccc-----------------------H
Confidence 458999999999999999999999999988763 478999988855 6
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCCc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS 338 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 338 (399)
.+++.|+|.++|+++++ ++|+++.+.. |. + .++|.+.+++++..+|..
T Consensus 90 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~~-------G~-----~---~~~l~~~l~~~~~~~~~~ 137 (139)
T 3d22_A 90 DFSASWEIKATPTFFFL-RDGQQVDKLV-------GA-----N---KPELHKKITAILDSLPPS 137 (139)
T ss_dssp HHHHHTTCCEESEEEEE-ETTEEEEEEE-------SC-----C---HHHHHHHHHHHHHTSCTT
T ss_pred HHHHHcCCCcccEEEEE-cCCeEEEEEe-------CC-----C---HHHHHHHHHHHhccCCCC
Confidence 78999999999999999 9999987632 21 2 256666777776665543
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=120.58 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=78.0
Q ss_pred cccccccCCeE-EecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 6 WYVQQLRRRMT-STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 6 ~~~~~~~p~f~-l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
...+..+|+|. +.+.++....+++.+||+++|+||++||++|+.+.|.+ .++++.++ ++.++.|+++...
T Consensus 4 ~~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~----~~~~~~vd~~~~~-- 77 (134)
T 2fwh_A 4 TAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA----DTVLLQANVTAND-- 77 (134)
T ss_dssp ------CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT----TSEEEEEECTTCC--
T ss_pred ccccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CcEEEEEeCCCCc--
Confidence 35677899998 66777777778888899999999999999999999998 88888874 2888888876431
Q ss_pred HHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
+....+++.|+|.++|+++++|+ +|+++
T Consensus 78 ------------------~~~~~l~~~~~v~~~Pt~~~~d~---~G~~v 105 (134)
T 2fwh_A 78 ------------------AQDVALLKHLNVLGLPTILFFDG---QGQEH 105 (134)
T ss_dssp ------------------HHHHHHHHHTTCCSSSEEEEECT---TSCBC
T ss_pred ------------------chHHHHHHHcCCCCCCEEEEECC---CCCEe
Confidence 22378999999999999999998 99887
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=110.18 Aligned_cols=72 Identities=25% Similarity=0.478 Sum_probs=64.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.+ .+
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~ 62 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD----------KLKIVKIDVDEN-----------------------QE 62 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT----------TCEEEEEETTTC-----------------------CS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------HH
Confidence 689999999999999999999999999998864 488999988855 56
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 63 l~~~~~v~~~Pt~~~~-~~G~~~~~~ 87 (112)
T 2voc_A 63 TAGKYGVMSIPTLLVL-KDGEVVETS 87 (112)
T ss_dssp HHHHTTCCSBSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCcccEEEEE-eCCEEEEEE
Confidence 8899999999999999 999998763
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=113.25 Aligned_cols=82 Identities=18% Similarity=0.367 Sum_probs=65.6
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 265 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 265 (399)
.+.++..+||+++|+||++||++|+.+.|.+ ..+.+.+... +.++.|++|.+.
T Consensus 19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~~-------------- 74 (130)
T 2kuc_A 19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH----------FVNLKMDMEKGE-------------- 74 (130)
T ss_dssp HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH----------SEEEEECSSSTT--------------
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC----------eEEEEEecCCcc--------------
Confidence 3455556789999999999999999999998 6666655543 566666666422
Q ss_pred cccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 266 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 266 ~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
...+++.|+|.++|+++++|++|+++.+.
T Consensus 75 -------~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~ 103 (130)
T 2kuc_A 75 -------GVELRKKYGVHAYPTLLFINSSGEVVYRL 103 (130)
T ss_dssp -------HHHHHHHTTCCSSCEEEEECTTSCEEEEE
T ss_pred -------hHHHHHHcCCCCCCEEEEECCCCcEEEEe
Confidence 47899999999999999999999998763
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.1e-14 Score=110.60 Aligned_cols=73 Identities=18% Similarity=0.362 Sum_probs=61.6
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
++.++|+|+|+|||+||++|+.+.|.+.++++.++ ++.++.|++|.. .++++
T Consensus 16 ~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~------------------------~~l~~ 67 (105)
T 3zzx_A 16 NEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS----DVVFLKVDVDEC------------------------EDIAQ 67 (105)
T ss_dssp HHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEETTTC------------------------HHHHH
T ss_pred HhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC----CeEEEEEecccC------------------------HHHHH
Confidence 34468999999999999999999999999988764 377888866543 78999
Q ss_pred hcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|+|.++||++++. +|+.+.+
T Consensus 68 ~~~V~~~PT~~~~~----~G~~v~~ 88 (105)
T 3zzx_A 68 DNQIACMPTFLFMK----NGQKLDS 88 (105)
T ss_dssp HTTCCBSSEEEEEE----TTEEEEE
T ss_pred HcCCCeecEEEEEE----CCEEEEE
Confidence 99999999999885 8888755
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-14 Score=122.39 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=96.9
Q ss_pred hhcCCCCccc-C--C---------CC----Cceeeccc-cCCcEEEEEEe-cCCChhhh-hhHHHHHHHHHHH-Hhhhhh
Q 015833 173 LTNHDRGYLL-G--H---------PP----DEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKI-KQNLVE 232 (399)
Q Consensus 173 ~g~~~p~f~l-~--~---------~g----~~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~-~~~~~~ 232 (399)
+|..+|+|++ + . +| + .+++++ ++||+++|+|| +.|||.|. .+++.+.+.+++| ++.
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~-~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~--- 78 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFT-SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN--- 78 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEE-EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS---
T ss_pred CCCCCCCeEEEcccccccccccccCCCccce-eEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhC---
Confidence 6889999999 6 3 67 6 899998 69999999888 56999999 8999999999999 765
Q ss_pred cCCCCCCEE-EEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEec
Q 015833 233 KGDALEDFE-VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 233 ~~~~~~~~~-vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~ 300 (399)
+++ |++||+| +....+++.++.+.-.||++.|.+.++++.||+. ..+.+|||| +|+|++.
T Consensus 79 ------g~~~V~gvS~D-~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~ 150 (182)
T 1xiy_A 79 ------NFDDIYCITNN-DIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM 150 (182)
T ss_dssp ------CCSEEEEEESS-CHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred ------CCcEEEEEeCC-CHHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEE
Confidence 784 9999999 5666677776666226999999999999999973 256789998 9999987
Q ss_pred c
Q 015833 301 Q 301 (399)
Q Consensus 301 ~ 301 (399)
.
T Consensus 151 ~ 151 (182)
T 1xiy_A 151 F 151 (182)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-14 Score=121.39 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=64.3
Q ss_pred eccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 015833 191 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 270 (399)
Q Consensus 191 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 270 (399)
.+++++|++++|+|||+|||+|+.+.|.|.++++++. ++.++.|++|.+
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-----------~v~~~~v~~d~~-------------------- 96 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRA-------------------- 96 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEECHHHH--------------------
T ss_pred HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----------CcEEEEEECCCC--------------------
Confidence 3566788999999999999999999999999987653 478888877633
Q ss_pred chhHHHHHhCC---CCccceEEEECCCCcEEeccc
Q 015833 271 PTIKELTKYFD---VQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 271 d~~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~ 302 (399)
.++++.|+ +.++||++++|++|+++.+.+
T Consensus 97 ---~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g 128 (167)
T 1z6n_A 97 ---EDDLRQRLALERIAIPLVLVLDEEFNLLGRFV 128 (167)
T ss_dssp ---HHHTTTTTTCSSCCSSEEEEECTTCCEEEEEE
T ss_pred ---HHHHHHHHHcCCCCcCeEEEECCCCCEEEEEc
Confidence 45566665 999999999999999987654
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-14 Score=114.96 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=63.8
Q ss_pred cEEEEEEecCCC--hhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 198 KTVGLYFSARWC--IPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 198 k~vll~F~a~wC--~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++|||+|||+|| ++|+.+.|.|.++.++|.++ +.++.|++|.+ .+
T Consensus 34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~----------v~~~KVdvDe~-----------------------~~ 80 (137)
T 2qsi_A 34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR----------LVAAEVAAEAE-----------------------RG 80 (137)
T ss_dssp SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT----------EEEEEECGGGH-----------------------HH
T ss_pred CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC----------cEEEEEECCCC-----------------------HH
Confidence 499999999999 99999999999999998754 78888887744 78
Q ss_pred HHHhCCCCccceEEEECCCCcEEeccc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++..|+|+++||+++| ++|+++.+..
T Consensus 81 la~~ygV~siPTlilF-kdG~~v~~~v 106 (137)
T 2qsi_A 81 LMARFGVAVCPSLAVV-QPERTLGVIA 106 (137)
T ss_dssp HHHHHTCCSSSEEEEE-ECCEEEEEEE
T ss_pred HHHHcCCccCCEEEEE-ECCEEEEEEe
Confidence 9999999999999999 9999998843
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-14 Score=118.57 Aligned_cols=100 Identities=7% Similarity=-0.004 Sum_probs=71.6
Q ss_pred CCcEEEEEEecCC--ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 196 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 196 ~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.+++|||+|||+| |++|+.+.|.|.++.++|.++ .+.|+.|++|.+
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~---------~v~~~KVdvDe~----------------------- 80 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDY---------TWQVAIADLEQS----------------------- 80 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTS---------CCEEEECCHHHH-----------------------
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCC---------eEEEEEEECCCC-----------------------
Confidence 3567999999999 999999999999999988642 277887777733
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCCccccc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHI 342 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 342 (399)
.+++..|+|+++||+++| ++|+++.+. .|..+ . ++|.+.|++.+...+.+...+
T Consensus 81 ~~lA~~ygV~sIPTlilF-k~G~~v~~~-------~G~~~----k---~~l~~~i~~~l~~~~~~~~~~ 134 (140)
T 2qgv_A 81 EAIGDRFGAFRFPATLVF-TGGNYRGVL-------NGIHP----W---AELINLMRGLVEPQQERASLE 134 (140)
T ss_dssp HHHHHHHTCCSSSEEEEE-ETTEEEEEE-------ESCCC----H---HHHHHHHHHHHC---------
T ss_pred HHHHHHcCCccCCEEEEE-ECCEEEEEE-------ecCCC----H---HHHHHHHHHHhcCCCCCCccc
Confidence 889999999999999999 999999884 33222 2 355566666664444443333
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-14 Score=122.22 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=67.0
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH--HHHHhcCCC
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF--ESYFGTMPW 263 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~--~~~~~~~~~ 263 (399)
.+.++..+||+|+|+|||+||++|+.+.+.+ .++.+.+.+. +.++.|++|...+.. ........+
T Consensus 39 ~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~----------~~~v~v~~d~~~~~~~~~~~~~~~~~ 108 (172)
T 3f9u_A 39 GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND----------YVLITLYVDNKTPLTEPVKIMENGTE 108 (172)
T ss_dssp HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH----------CEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC----------EEEEEEecCcccccchhhhhhhcchh
Confidence 3445556799999999999999999974444 4555555443 889999988543100 000001111
Q ss_pred cccccCCchhHHH-HHhCCCCccceEEEECCCCcEEeccc
Q 015833 264 LALPFGDPTIKEL-TKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 264 ~~~p~~~d~~~~~-~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
..+....+....+ ++.|+|.++|+++|||++|+++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~ 148 (172)
T 3f9u_A 109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSY 148 (172)
T ss_dssp EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCB
T ss_pred hhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeecc
Confidence 1122222222333 68999999999999999999988743
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-14 Score=116.51 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=75.6
Q ss_pred cCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCC
Q 015833 12 RRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW 91 (399)
Q Consensus 12 ~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~ 91 (399)
+++++..+.+|........+||+++|+||++||++|+.+.|.|.++++++++ ++.++.|+.|.
T Consensus 6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~-------------- 68 (126)
T 2l57_A 6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG---KFNIYYARLEE-------------- 68 (126)
T ss_dssp SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS---SCEEEEEETTS--------------
T ss_pred cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC---CeEEEEEeCCC--------------
Confidence 4566666666665556667899999999999999999999999999999863 38999997431
Q ss_pred cccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 92 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 92 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+ ....+++.|+|.++|+++++++ +|+++..
T Consensus 69 ------d--~~~~~~~~~~v~~~Pt~~~~~~---~G~~~~~ 98 (126)
T 2l57_A 69 ------E--KNIDLAYKYDANIVPTTVFLDK---EGNKFYV 98 (126)
T ss_dssp ------S--HHHHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred ------C--chHHHHHHcCCcceeEEEEECC---CCCEEEE
Confidence 1 1278899999999999999999 9998754
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=116.55 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=60.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+|+|||+||++|+.+.|.|.++++++.+ .+.++.|++|.. .+
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~----------~~~~~~vd~d~~-----------------------~~ 68 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK----------MAAIYLVDVDQT-----------------------AV 68 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT----------TEEEEEEETTTC-----------------------CH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC----------ceEEEEEECCcC-----------------------HH
Confidence 478999999999999999999999999988764 388888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+++.|+|.++||++++ ++|+++
T Consensus 69 l~~~~~v~~~Pt~~~~-~~G~~v 90 (149)
T 3gix_A 69 YTQYFDISYIPSTVFF-FNGQHM 90 (149)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEE
T ss_pred HHHHcCCCccCeEEEE-ECCeEE
Confidence 9999999999999955 899988
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=108.74 Aligned_cols=72 Identities=24% Similarity=0.416 Sum_probs=64.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.|++|.. ..
T Consensus 20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 66 (109)
T 3tco_A 20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG----------KAVFGRLNVDEN-----------------------QK 66 (109)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC----------CceEEEEccccC-----------------------HH
Confidence 589999999999999999999999999998864 378888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 67 ~~~~~~i~~~Pt~~~~-~~g~~~~~~ 91 (109)
T 3tco_A 67 IADKYSVLNIPTTLIF-VNGQLVDSL 91 (109)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHhcCcccCCEEEEE-cCCcEEEee
Confidence 8999999999999999 999998773
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=107.05 Aligned_cols=72 Identities=22% Similarity=0.508 Sum_probs=63.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.+ ..
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 65 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PG 65 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------TT
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------HH
Confidence 468999999999999999999999999988764 488888888755 56
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 66 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 90 (108)
T 2trx_A 66 TAPKYGIRGIPTLLLF-KNGEVAATK 90 (108)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCcccCEEEEE-eCCEEEEEE
Confidence 8899999999999999 899998763
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=109.78 Aligned_cols=73 Identities=21% Similarity=0.541 Sum_probs=61.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.+++++++.. ++.++.|++|.+ ..
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~---------~~~~~~vd~~~~-----------------------~~ 67 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS---------NVSFLSIDADEN-----------------------SE 67 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT---------TSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC---------CEEEEEEecccC-----------------------HH
Confidence 3789999999999999999999999999886433 588888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 68 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 92 (112)
T 3d6i_A 68 ISELFEISAVPYFIII-HKGTILKEL 92 (112)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCcccEEEEE-ECCEEEEEe
Confidence 8999999999999999 799998763
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.6e-14 Score=118.42 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=77.7
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHH--HHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQ--KIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..||+|+|+|||+||++|+.+.|.+.+..+ ++.+ ..++.|.+|.+.
T Consensus 42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-----------~~fv~V~vD~e~--------------------- 89 (151)
T 3ph9_A 42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-----------NKFIMLNLMHET--------------------- 89 (151)
T ss_dssp HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-----------HTCEEEEESSCC---------------------
T ss_pred HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-----------cCeEEEEecCCc---------------------
Confidence 358999999999999999999999886422 2222 136777776431
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccC
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 335 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~ 335 (399)
..++..|++.++||++++|++|+++.+..| .++.+.|.......+.+.+.+++.++..
T Consensus 90 -~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G----~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 90 -TDKNLSPDGQYVPRIMFVDPSLTVRADIAG----RYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp -SCGGGCTTCCCSSEEEEECTTSCBCTTCCC----SCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred -hhhHhhcCCCCCCEEEEECCCCCEEEEEeC----CcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 223567899999999999999999987543 3445567778888888888888876654
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=108.96 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=54.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.++++++. ++.++.|++|.+ ..
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~ 62 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-----------YVEKIEILLQDM-----------------------QE 62 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-----------TEEEEEEEECCC-------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-----------CceEEEEECCCC-----------------------HH
Confidence 47899999999999999999999999988763 588988988865 57
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+++.+.
T Consensus 63 l~~~~~v~~~Pt~~~~-~~G~~~~~~ 87 (105)
T 4euy_A 63 IAGRYAVFTGPTVLLF-YNGKEILRE 87 (105)
T ss_dssp -------CCCCEEEEE-ETTEEEEEE
T ss_pred HHHhcCCCCCCEEEEE-eCCeEEEEE
Confidence 8899999999999999 699998763
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=107.80 Aligned_cols=72 Identities=26% Similarity=0.467 Sum_probs=63.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.+ ..
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 68 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD----------KIEIVKLNIDEN-----------------------PG 68 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC----------CeEEEEEEcCCC-----------------------HH
Confidence 368999999999999999999999999988754 488999988865 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 69 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 93 (112)
T 1t00_A 69 TAAKYGVMSIPTLNVY-QGGEVAKTI 93 (112)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHhCCCCcccEEEEE-eCCEEEEEE
Confidence 8999999999999888 899998763
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=108.99 Aligned_cols=73 Identities=22% Similarity=0.371 Sum_probs=61.2
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
..+++++|+||++||++|+.+.|.|.+++++++ ++.++.|+++.. ..
T Consensus 22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~v~~~~vd~~~~----------------------~~ 68 (111)
T 2pu9_C 22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------NK 68 (111)
T ss_dssp CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------TH
T ss_pred cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-----------CeEEEEEecCcc----------------------hH
Confidence 358899999999999999999999999988764 477888887732 27
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++.|+|.++||++++ ++|+++.+.
T Consensus 69 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~ 94 (111)
T 2pu9_C 69 TLAKELGIRVVPTFKIL-KENSVVGEV 94 (111)
T ss_dssp HHHHHHCCSBSSEEEEE-SSSSEEEEE
T ss_pred HHHHHcCCCeeeEEEEE-eCCcEEEEE
Confidence 89999999999996555 999998763
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=106.46 Aligned_cols=72 Identities=21% Similarity=0.388 Sum_probs=64.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.+.++++++.+ .+.++.|++|.+ ..
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 64 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEG----------KADILKLDVDEN-----------------------PS 64 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC----------CcEEEEEECCcC-----------------------HH
Confidence 689999999999999999999999999998864 378999988865 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 65 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 89 (106)
T 3die_A 65 TAAKYEVMSIPTLIVF-KDGQPVDKV 89 (106)
T ss_dssp HHHHTTCCSBSEEEEE-ETTEEEEEE
T ss_pred HHHhCCCcccCEEEEE-eCCeEEEEE
Confidence 8999999999999999 599988763
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=107.49 Aligned_cols=72 Identities=26% Similarity=0.471 Sum_probs=63.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.++++.+++.+ ++.++.|++|.+ .+
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~v~~~~v~~~~~-----------------------~~ 62 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD----------KVTVAKLNVDEN-----------------------PE 62 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECcCC-----------------------HH
Confidence 468999999999999999999999999988754 378888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 87 (105)
T 1nsw_A 63 TTSQFGIMSIPTLILF-KGGRPVKQL 87 (105)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCccccEEEEE-eCCeEEEEE
Confidence 8999999999999999 899988763
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=110.36 Aligned_cols=71 Identities=27% Similarity=0.509 Sum_probs=62.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.|.++++++. ++.++.|++|.+ .+
T Consensus 37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~~ 82 (124)
T 1xfl_A 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----------NVLFLKVDTDEL-----------------------KS 82 (124)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTS-----------------------HH
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CcEEEEEECccC-----------------------HH
Confidence 58999999999999999999999999888764 478888888754 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 83 l~~~~~v~~~Pt~~~~-~~G~~~~~~ 107 (124)
T 1xfl_A 83 VASDWAIQAMPTFMFL-KEGKILDKV 107 (124)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCccCEEEEE-ECCEEEEEE
Confidence 8999999999999888 899998763
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=105.99 Aligned_cols=72 Identities=24% Similarity=0.465 Sum_probs=62.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|.+ .+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 64 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD----------KLKCVKLNTDES-----------------------PN 64 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC----------ceEEEEEECCCC-----------------------HH
Confidence 368999999999999999999999999988764 378888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 65 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 89 (107)
T 1dby_A 65 VASEYGIRSIPTIMVF-KGGKKCETI 89 (107)
T ss_dssp HHHHHTCCSSCEEEEE-SSSSEEEEE
T ss_pred HHHHCCCCcCCEEEEE-eCCEEEEEE
Confidence 8999999999999988 799998763
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=106.94 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=62.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.++++++. ++.++.|++|.+ ..
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~ 65 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----------QAVFLEVDVHQC-----------------------QG 65 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-----------CcEEEEEECccC-----------------------HH
Confidence 47899999999999999999999999988873 478888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+++.+.
T Consensus 66 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 90 (107)
T 1gh2_A 66 TAATNNISATPTFQFF-RNKVRIDQY 90 (107)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHhcCCCcccEEEEE-ECCeEEEEE
Confidence 8999999999999999 899988763
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=111.16 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=61.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++++ .+.++.|++|.+ ..
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 80 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD----------VVKVGAVNADKH-----------------------QS 80 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT----------TSEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC----------ceEEEEEeCCCC-----------------------HH
Confidence 368999999999999999999999999988764 378888887755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEe
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~ 299 (399)
+++.|+|.++|++++++++|+++.
T Consensus 81 l~~~~~v~~~Pt~~~~~~~~~~~~ 104 (130)
T 2dml_A 81 LGGQYGVQGFPTIKIFGANKNKPE 104 (130)
T ss_dssp HHHHHTCCSSSEEEEESSCTTSCE
T ss_pred HHHHcCCCccCEEEEEeCCCCeEE
Confidence 899999999999999988887333
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-13 Score=108.70 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=60.3
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
+.++|+||++||++|+.+.|.|.++++++.+. ++.++.|++|.+ ..++
T Consensus 23 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~---------~v~~~~vd~~~~-----------------------~~~~ 70 (126)
T 1x5e_A 23 GDWMIEFYAPWCPACQNLQPEWESFAEWGEDL---------EVNIAKVDVTEQ-----------------------PGLS 70 (126)
T ss_dssp SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGG---------TCEEEEEETTTC-----------------------HHHH
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECcCC-----------------------HHHH
Confidence 34999999999999999999999999998754 588888888755 6789
Q ss_pred HhCCCCccceEEEECCCCcEEe
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~ 299 (399)
+.|+|.++|+++++ ++|++..
T Consensus 71 ~~~~v~~~Pt~~~~-~~G~~~~ 91 (126)
T 1x5e_A 71 GRFIINALPTIYHC-KDGEFRR 91 (126)
T ss_dssp HHTTCCSSSEEEEE-ETTEEEE
T ss_pred HHcCCcccCEEEEE-eCCeEEE
Confidence 99999999999999 8999643
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=111.53 Aligned_cols=72 Identities=21% Similarity=0.457 Sum_probs=63.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.+ .+
T Consensus 39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~ 85 (128)
T 2o8v_B 39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PG 85 (128)
T ss_dssp CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------CT
T ss_pred cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HH
Confidence 479999999999999999999999999988764 488888888755 46
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 86 l~~~~~v~~~Pt~~~~-~~G~~~~~~ 110 (128)
T 2o8v_B 86 TAPKYGIRGIPTLLLF-KNGEVAATK 110 (128)
T ss_dssp TSGGGTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCccCEEEEE-eCCEEEEEE
Confidence 7889999999999999 999998763
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-13 Score=108.40 Aligned_cols=72 Identities=25% Similarity=0.493 Sum_probs=63.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.+ .+
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~----------~v~~~~vd~d~~-----------------------~~ 76 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG----------KVVMAKVDIDDH-----------------------TD 76 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------SSEEEEEETTTT-----------------------HH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEeCCCC-----------------------HH
Confidence 468999999999999999999999999988753 488888888754 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 77 l~~~~~v~~~Pt~~~~-~~G~~~~~~ 101 (119)
T 1w4v_A 77 LAIEYEVSAVPTVLAM-KNGDVVDKF 101 (119)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCcccEEEEE-eCCcEEEEE
Confidence 8999999999999999 899998763
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-13 Score=110.43 Aligned_cols=85 Identities=27% Similarity=0.402 Sum_probs=65.5
Q ss_pred CCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 015833 184 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 263 (399)
Q Consensus 184 ~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 263 (399)
.+++ .+......+++++|+||++||++|+.+.|.|.++++++.+. +.++.++.|+++.+
T Consensus 22 l~~~-~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~v~~~~vd~~~~------------- 80 (140)
T 2dj1_A 22 LNDG-NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDN-------DPPIAVAKIDATSA------------- 80 (140)
T ss_dssp CCTT-THHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSS-------SSCCEEEEECTTTC-------------
T ss_pred cChH-hHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhcc-------CCceEEEEEeCccc-------------
Confidence 3444 44333335799999999999999999999999999999754 22466666665543
Q ss_pred cccccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 264 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 264 ~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+++.|+|.++|+++++ ++|++...
T Consensus 81 ----------~~~~~~~~v~~~Pt~~~~-~~G~~~~~ 106 (140)
T 2dj1_A 81 ----------SMLASKFDVSGYPTIKIL-KKGQAVDY 106 (140)
T ss_dssp ----------HHHHHHTTCCSSSEEEEE-ETTEEEEC
T ss_pred ----------HHHHHHCCCCccCeEEEE-ECCcEEEc
Confidence 678999999999999999 88985433
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-14 Score=120.40 Aligned_cols=102 Identities=15% Similarity=0.280 Sum_probs=78.2
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
+...++| +..|+.+++++.+||+++|+|| ++||++|+.+.|.| .++.+.+.. ++.++.|+.+....
T Consensus 27 ~~~~~~~---~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~---~~~~v~vd~~~~~~---- 96 (154)
T 2ju5_A 27 AAANLQW---ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV---HLHMVEVDFPQKNH---- 96 (154)
T ss_dssp CCCCCCE---ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEECCSSCC----
T ss_pred ccCCCCC---CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC---cEEEEEecCccccC----
Confidence 3344555 4457778888889999999999 99999999999999 777665543 38888888875531
Q ss_pred hHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 85 YRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 85 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+++...+....+++.|+|.++|+++++|+ +|+++..
T Consensus 97 ---------~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~---~G~~~~~ 132 (154)
T 2ju5_A 97 ---------QPEEQRQKNQELKAQYKVTGFPELVFIDA---EGKQLAR 132 (154)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred ---------CChhhHhhHHHHHHHcCCCCCCEEEEEcC---CCCEEEE
Confidence 11112234478999999999999999999 9999865
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-13 Score=113.37 Aligned_cols=72 Identities=18% Similarity=0.472 Sum_probs=63.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|+++++++.+ ++.++.|++|.+ ..
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~----------~v~~~~vd~~~~-----------------------~~ 109 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG----------QVRLAKIDTQAH-----------------------PA 109 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------TCEEEEEETTTS-----------------------TH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC----------CEEEEEEeCCcc-----------------------HH
Confidence 478999999999999999999999999999864 378888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 110 l~~~~~i~~~Pt~~~~-~~G~~~~~~ 134 (155)
T 2ppt_A 110 VAGRHRIQGIPAFILF-HKGRELARA 134 (155)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCcCCEEEEE-eCCeEEEEe
Confidence 8999999999999999 899998763
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-13 Score=106.15 Aligned_cols=72 Identities=24% Similarity=0.495 Sum_probs=63.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++.+++++ ++.++.|++|.+ ..
T Consensus 24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~v~~~~v~~~~~-----------------------~~ 70 (115)
T 1thx_A 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSD----------RLKVVKLEIDPN-----------------------PT 70 (115)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT----------TCEEEEEESTTC-----------------------HH
T ss_pred CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC----------cEEEEEEEcCCC-----------------------HH
Confidence 478999999999999999999999999988764 388999988855 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 71 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 95 (115)
T 1thx_A 71 TVKKYKVEGVPALRLV-KGEQILDST 95 (115)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCceeEEEEE-cCCEEEEEe
Confidence 8999999999999999 999998763
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=113.81 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=58.4
Q ss_pred ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 192 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 192 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
+++.+||+++|+||++||++|+.+.|.|.++.+++ ++.++.|++|..
T Consensus 35 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~------------~v~~~~vd~~~~--------------------- 81 (133)
T 3cxg_A 35 FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY------------YVTLVDIDVDIH--------------------- 81 (133)
T ss_dssp HTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE------------ECEEEEEETTTC---------------------
T ss_pred HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc------------CEEEEEEeccch---------------------
Confidence 45566899999999999999999999988776543 255666666543
Q ss_pred hhHHHHHhCCCCccceEEEE-CCCCc--EEecc
Q 015833 272 TIKELTKYFDVQGIPCLVII-GPEGK--TVTKQ 301 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~li-d~~G~--i~~~~ 301 (399)
..+++.|+|.++|+++++ |++|+ ++.+.
T Consensus 82 --~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~ 112 (133)
T 3cxg_A 82 --PKLNDQHNIKALPTFEFYFNLNNEWVLVHTV 112 (133)
T ss_dssp --HHHHHHTTCCSSSEEEEEEEETTEEEEEEEE
T ss_pred --HHHHHhcCCCCCCEEEEEEecCCCeEEEEEE
Confidence 678999999999999999 44665 77663
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=117.22 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=94.1
Q ss_pred cccccccCCeEEecCCC----------CEEecccc-CCCEE-EEEEecCCCcccHh-hHHHHHHHHHHHhcCCCcE-EEE
Q 015833 6 WYVQQLRRRMTSTKEIG----------EEVKVSDL-EGKVT-ALYFSANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVV 71 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G----------~~v~l~~~-~gk~v-lv~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~ii 71 (399)
.++|...|+.++.-..+ ++++|+++ +||++ |++||+.|||+|.. ++|.|++.+++|++.| + +|+
T Consensus 10 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~Vi 87 (176)
T 4f82_A 10 IQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIW 87 (176)
T ss_dssp CCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEE
T ss_pred hhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEE
Confidence 36789999987765433 67999997 99965 55666999999999 9999999999999887 8 999
Q ss_pred EEecCCChHHHHHhHhcCCCc--ccccCChHHHHHHHhhcCCC-----------CcCeEEEEcCCCCCCCeeeccc
Q 015833 72 FVSSDEDLNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 72 ~Vs~D~~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
+||.|. ..+.+++.++.+.. +...+|.+ .++++.||+. ..|.+++| + +|+|++...
T Consensus 88 gIS~D~-~~~~~~f~~~~~l~~~f~lLsD~~--~~va~ayGv~~~~~~~G~g~~s~R~tfII-~---dG~I~~~~~ 156 (176)
T 4f82_A 88 CVSVND-AFVMGAWGRDLHTAGKVRMMADGS--AAFTHALGLTQDLSARGMGIRSLRYAMVI-D---GGVVKTLAV 156 (176)
T ss_dssp EEESSC-HHHHHHHHHHTTCTTTSEEEECTT--CHHHHHHTCEEECGGGTCCEEECCEEEEE-E---TTEEEEEEE
T ss_pred EEeCCC-HHHHHHHHHHhCCCCCceEEEcCc--hHHHHHhCCCccccccCCCcccccEEEEE-c---CCEEEEEEE
Confidence 999984 57788888876643 33334543 7888998873 25889999 8 999987643
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-13 Score=105.44 Aligned_cols=72 Identities=25% Similarity=0.508 Sum_probs=63.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.++.+++.+ ++.++.|++|.. ..
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~ 67 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE----------SFGFYYVDVEEE-----------------------KT 67 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC----------ceEEEEEECCcC-----------------------hh
Confidence 468999999999999999999999999988764 378888888855 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 68 l~~~~~v~~~Pt~~~~-~~g~~~~~~ 92 (111)
T 3gnj_A 68 LFQRFSLKGVPQILYF-KDGEYKGKM 92 (111)
T ss_dssp HHHHTTCCSSCEEEEE-ETTEEEEEE
T ss_pred HHHhcCCCcCCEEEEE-ECCEEEEEE
Confidence 8999999999999999 899988663
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=105.80 Aligned_cols=72 Identities=25% Similarity=0.433 Sum_probs=62.7
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
.++++++|+||++||++|+.+.|.+.+++++++ ++.++.|++|.. .
T Consensus 18 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------~ 63 (105)
T 3m9j_A 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC-----------------------Q 63 (105)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST-----------TSEEEEEETTTC-----------------------H
T ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc-----------CeEEEEEEhhhh-----------------------H
Confidence 357899999999999999999999999988764 478888888755 6
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++.|++.++|+++++ ++|+++.+.
T Consensus 64 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~ 89 (105)
T 3m9j_A 64 DVASESEVKSMPTFQFF-KKGQKVGEF 89 (105)
T ss_dssp HHHHHTTCCBSSEEEEE-ETTEEEEEE
T ss_pred HHHHHcCCCcCcEEEEE-ECCeEEEEE
Confidence 78999999999999999 889988763
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=106.55 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=66.1
Q ss_pred CCCCCceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 015833 183 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261 (399)
Q Consensus 183 ~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 261 (399)
..+++ .+...-. .+++++|+|||+||++|+.+.|.+.++++++... ....++.++.|++|.+
T Consensus 19 ~l~~~-~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-----~~~~~v~~~~vd~~~~----------- 81 (127)
T 3h79_A 19 ELTDE-TFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQK-----RNHLTFVAARIDGEKY----------- 81 (127)
T ss_dssp ECCTT-THHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS-----TTTTTEEEEEEETTTC-----------
T ss_pred ECChh-hHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhc-----ccCCCeEEEEEEcccc-----------
Confidence 44444 4433222 4799999999999999999999999999988632 0123578888887754
Q ss_pred CCcccccCCchhHHHHHhCCCCccceEEEECCCCcE
Q 015833 262 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 262 ~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
.++++.|+|.++||++++++++++
T Consensus 82 ------------~~l~~~~~v~~~Pt~~~~~~g~~~ 105 (127)
T 3h79_A 82 ------------PDVIERMRVSGFPTMRYYTRIDKQ 105 (127)
T ss_dssp ------------HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred ------------HhHHHhcCCccCCEEEEEeCCCCC
Confidence 789999999999999999766653
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=111.34 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=62.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+|+|||+||++|+.+.|.|+++++++.+ ++.++.|++|.+ .+
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----------~v~~~~vd~d~~-----------------------~~ 68 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN----------FAVIYLVDITEV-----------------------PD 68 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT----------TEEEEEEETTTC-----------------------CT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEccccC-----------------------HH
Confidence 378999999999999999999999999998854 488888988855 45
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.|+|.++||++++ ++|+++.+
T Consensus 69 ~~~~~~i~~~Pt~~~~-~~G~~v~~ 92 (142)
T 1qgv_A 69 FNKMYELYDPCTVMFF-FRNKHIMI 92 (142)
T ss_dssp TTTSSCSCSSCEEEEE-ETTEEEEE
T ss_pred HHHHcCCCCCCEEEEE-ECCcEEEE
Confidence 7889999999999999 68888764
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=113.47 Aligned_cols=89 Identities=11% Similarity=0.311 Sum_probs=71.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.|.++++++. ++.++.|++|.. ..
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~~~~-----------------------~~ 76 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-----------QVSFVKLEAEGV-----------------------PE 76 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-----------CeEEEEEECCCC-----------------------HH
Confidence 47899999999999999999999999988763 578888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhcc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN 334 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~ 334 (399)
+++.|+|.++|++++++ +|+++.+.. |. .. ++|.+.|++.+..
T Consensus 77 l~~~~~v~~~Pt~~~~~-~G~~~~~~~-------G~-----~~---~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 77 VSEKYEISSVPTFLFFK-NSQKIDRLD-------GA-----HA---PELTKKVQRHASS 119 (153)
T ss_dssp HHHHTTCCSSSEEEEEE-TTEEEEEEE-------SS-----CH---HHHHHHHHHHSCT
T ss_pred HHHHcCCCCCCEEEEEE-CCEEEEEEe-------CC-----CH---HHHHHHHHHHhcc
Confidence 89999999999999997 999987643 21 22 4566667666554
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-14 Score=123.18 Aligned_cols=81 Identities=17% Similarity=0.350 Sum_probs=63.3
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
.++....+||+|+|+|||+||++|+.+.|.|.++.+.+... +.++.|++|.+.+
T Consensus 38 ~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~----------~~~~~v~~d~~~~---------------- 91 (164)
T 1sen_A 38 GKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS----------HNFVMVNLEDEEE---------------- 91 (164)
T ss_dssp HHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH----------TTSEEEEEEGGGS----------------
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC----------CeEEEEEecCCch----------------
Confidence 45555667899999999999999999999999987665433 5678888875421
Q ss_pred CCchhHHHHHhCCC--CccceEEEECCCCcEEecc
Q 015833 269 GDPTIKELTKYFDV--QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 269 ~~d~~~~~~~~~~v--~~~P~~~lid~~G~i~~~~ 301 (399)
.++..|++ .++||++++|++|+++.+.
T Consensus 92 ------~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~ 120 (164)
T 1sen_A 92 ------PKDEDFSPDGGYIPRILFLDPSGKVHPEI 120 (164)
T ss_dssp ------CSCGGGCTTCSCSSEEEEECTTSCBCTTC
T ss_pred ------HHHHHhcccCCcCCeEEEECCCCCEEEEE
Confidence 14556677 6699999999999998764
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-13 Score=106.54 Aligned_cols=71 Identities=17% Similarity=0.377 Sum_probs=62.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.. ..+
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 70 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG----------KVIFLKVDVDAV-----------------------AAV 70 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTT-----------------------HHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC----------CeEEEEEECCch-----------------------HHH
Confidence 78899999999999999999999999988753 478888888754 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++|+++++ ++|+++.+.
T Consensus 71 ~~~~~v~~~Pt~~~~-~~G~~~~~~ 94 (112)
T 1ep7_A 71 AEAAGITAMPTFHVY-KDGVKADDL 94 (112)
T ss_dssp HHHHTCCBSSEEEEE-ETTEEEEEE
T ss_pred HHHcCCCcccEEEEE-ECCeEEEEE
Confidence 999999999998888 899998763
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-13 Score=103.73 Aligned_cols=72 Identities=29% Similarity=0.529 Sum_probs=63.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.|++|.+ ..
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 65 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG----------KVTVAKVNIDDN-----------------------PE 65 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------SEEEEEEETTTC-----------------------CH
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC----------cEEEEEEECCCC-----------------------HH
Confidence 478999999999999999999999999998864 488888888755 57
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 66 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 90 (107)
T 2i4a_A 66 TPNAYQVRSIPTLMLV-RDGKVIDKK 90 (107)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHhcCCCccCEEEEE-eCCEEEEEe
Confidence 8999999999999999 999998763
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-13 Score=109.39 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=62.9
Q ss_pred CCCCCceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 015833 183 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261 (399)
Q Consensus 183 ~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 261 (399)
..++. .+..... .+++++|+||++||++|+.+.|.|.+++++++.. .++.++.|+++..
T Consensus 11 ~l~~~-~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--------~~~~~~~vd~~~~----------- 70 (133)
T 2dj3_A 11 VVVGK-TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ--------KDLVIAKMDATAN----------- 70 (133)
T ss_dssp ECCTT-TCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTS--------SSEEEEEECTTTS-----------
T ss_pred EEcCC-CHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC--------CCEEEEEecCCcC-----------
Confidence 44455 4444333 4899999999999999999999999999998742 2466766665533
Q ss_pred CCcccccCCchhHHHHHhCCCCccceEEEECCCCcE
Q 015833 262 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 262 ~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
..+++.|+|.++||+++++++|++
T Consensus 71 ------------~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 71 ------------DITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp ------------CCCCSSCCCSSSSEEEEECTTCTT
T ss_pred ------------HHHHhhcCCCcCCEEEEEeCCCcc
Confidence 345678999999999999876653
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-13 Score=108.98 Aligned_cols=71 Identities=21% Similarity=0.399 Sum_probs=62.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++. ++.++.|++|.+ .+
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~~ 81 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----------TVKFAKVDADNN-----------------------SE 81 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------HH
Confidence 57899999999999999999999999988873 478888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 82 l~~~~~v~~~Pt~~i~-~~G~~~~~~ 106 (125)
T 1r26_A 82 IVSKCRVLQLPTFIIA-RSGKMLGHV 106 (125)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCcccEEEEE-eCCeEEEEE
Confidence 8999999999999888 899988763
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=106.71 Aligned_cols=75 Identities=17% Similarity=0.394 Sum_probs=62.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.++++++.... ..++.++.|++|.+ ..
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~~vd~~~~-----------------------~~ 74 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQT------KGKVKLAAVDATVN-----------------------QV 74 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHT------TTSEEEEEEETTTC-----------------------CH
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhc------CCcEEEEEEECCCC-----------------------HH
Confidence 46899999999999999999999999999987310 12588888887754 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.|+|.++|+++++++ |+++.+
T Consensus 75 l~~~~~v~~~Pt~~~~~~-g~~~~~ 98 (133)
T 1x5d_A 75 LASRYGIRGFPTIKIFQK-GESPVD 98 (133)
T ss_dssp HHHHHTCCSSSEEEEEET-TEEEEE
T ss_pred HHHhCCCCeeCeEEEEeC-CCceEE
Confidence 899999999999999966 877655
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-13 Score=104.69 Aligned_cols=73 Identities=27% Similarity=0.561 Sum_probs=63.2
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
.++++++|+||++||++|+.+.|.+.++.++++. ++.++.|++|.+ .
T Consensus 18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~ 64 (106)
T 1xwb_A 18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD----------NVVVLKVDVDEC-----------------------E 64 (106)
T ss_dssp HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------H
T ss_pred cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC----------CeEEEEEeccch-----------------------H
Confidence 3578999999999999999999999999888753 588888888754 6
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++.|++.++|+++++ ++|+++.+.
T Consensus 65 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~ 90 (106)
T 1xwb_A 65 DIAMEYNISSMPTFVFL-KNGVKVEEF 90 (106)
T ss_dssp HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHHcCCCcccEEEEE-cCCcEEEEE
Confidence 78999999999998888 789988763
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-13 Score=113.32 Aligned_cols=69 Identities=13% Similarity=0.346 Sum_probs=60.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++|+|+|||+||+||+.+.|.|.++++++.+. +.++.|++|+. .+++.+|+
T Consensus 40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~------------------------~e~a~~y~ 92 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEV------------------------PDFNTMYE 92 (160)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC------------------------CTTTTTTT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence 4689999999999999999999999999999654 88999988755 66789999
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|.++||++++. +|+.+
T Consensus 93 V~siPT~~fFk----~G~~v 108 (160)
T 2av4_A 93 LYDPVSVMFFY----RNKHM 108 (160)
T ss_dssp CCSSEEEEEEE----TTEEE
T ss_pred CCCCCEEEEEE----CCEEE
Confidence 99999999997 67665
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.7e-13 Score=109.75 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++++++.++ +.++.|++|.+ ..+
T Consensus 24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~----------v~~~~vd~~~~-----------------------~~l 70 (140)
T 3hz4_A 24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS----------AVFGRINIATN-----------------------PWT 70 (140)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEETTTC-----------------------HHH
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc----------eEEEEEECCcC-----------------------HhH
Confidence 789999999999999999999999999998753 78888888755 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++|+++++ ++|+++.+.
T Consensus 71 ~~~~~v~~~Pt~~~~-~~G~~~~~~ 94 (140)
T 3hz4_A 71 AEKYGVQGTPTFKFF-CHGRPVWEQ 94 (140)
T ss_dssp HHHHTCCEESEEEEE-ETTEEEEEE
T ss_pred HHHCCCCcCCEEEEE-eCCcEEEEE
Confidence 999999999999999 899988663
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-13 Score=108.10 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=60.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.. ..
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 66 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG----------KVRAGKVDCQAY-----------------------PQ 66 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEeCcCC-----------------------HH
Confidence 368999999999999999999999999998864 478888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i 297 (399)
+++.|+|.++|++++++++|++
T Consensus 67 ~~~~~~v~~~Pt~~~~~~~~~~ 88 (122)
T 3aps_A 67 TCQKAGIKAYPSVKLYQYERAK 88 (122)
T ss_dssp HHHHTTCCSSSEEEEEEEEGGG
T ss_pred HHHHcCCCccceEEEEeCCCcc
Confidence 8999999999999999777763
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-13 Score=107.62 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=62.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++ . ++.++.|++|.+ ..
T Consensus 22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~----------~v~~~~vd~~~~-----------------------~~ 67 (118)
T 2f51_A 22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-K----------DVTFIKVDVDKN-----------------------GN 67 (118)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T----------TSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C----------CeEEEEEECCCC-----------------------HH
Confidence 3789999999999999999999999998887 2 578999988855 67
Q ss_pred HHHhCCCCccceEEEECC---CCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGP---EGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~---~G~i~~~~ 301 (399)
+++.|+|.++|++++++. +|+++.+.
T Consensus 68 ~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~ 96 (118)
T 2f51_A 68 AADAYGVSSIPALFFVKKEGNEIKTLDQF 96 (118)
T ss_dssp HHHHTTCCSSSEEEEEEEETTEEEEEEEE
T ss_pred HHHhcCCCCCCEEEEEeCCCCcceEEEee
Confidence 899999999999999955 38888773
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-13 Score=108.10 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=61.5
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
.++++++|+||++||++|+.+.|.+.+++++++ ++.++.|+++.. ..
T Consensus 35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~~~~~~vd~~~~----------------------~~ 81 (124)
T 1faa_A 35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------NK 81 (124)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------TH
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-----------CCEEEEEecCcc----------------------hH
Confidence 468999999999999999999999999988764 467888887632 27
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++.|+|.++||++++ ++|+++.+.
T Consensus 82 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~ 107 (124)
T 1faa_A 82 TLAKELGIRVVPTFKIL-KENSVVGEV 107 (124)
T ss_dssp HHHHHHCCSSSSEEEEE-ETTEEEEEE
T ss_pred HHHHHcCCCeeeEEEEE-eCCcEEEEE
Confidence 78999999999997766 899998763
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.1e-13 Score=119.41 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=72.3
Q ss_pred CCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 015833 177 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 255 (399)
.++..+ +.++. .+......+++++|+||++||++|+.+.|.+.++++++.+ .+.++.|++|..
T Consensus 94 ~~~~~v~~l~~~-~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----------~v~~~~vd~~~~----- 157 (210)
T 3apq_A 94 DDDPEIITLERR-EFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG----------LLRIGAVNCGDD----- 157 (210)
T ss_dssp TTCTTSEECCHH-HHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT----------TBEEEEEETTTC-----
T ss_pred CCCCceEEecHH-HHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC----------ceEEEEEECCcc-----
Confidence 344444 55555 5544445689999999999999999999999999988854 378888888755
Q ss_pred HHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 256 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 256 ~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
..+++.|+|.++||++++ ++|+++.+.
T Consensus 158 ------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 184 (210)
T 3apq_A 158 ------------------RMLCRMKGVNSYPSLFIF-RSGMAAVKY 184 (210)
T ss_dssp ------------------HHHHHHTTCCSSSEEEEE-CTTSCCEEC
T ss_pred ------------------HHHHHHcCCCcCCeEEEE-ECCCceeEe
Confidence 678999999999999999 899987653
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-12 Score=121.42 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=104.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHH-------HHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHH
Q 015833 31 EGKVTALYFSANWYPPCGNFTGV-------LVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 103 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~-------l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 103 (399)
++++++|+|||+||+ |+.++|. +.++++.+++.+ +.++.|+.|.. .
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~--v~~~~Vd~~~~------------------------~ 79 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKD--IGFVMVDAKKE------------------------A 79 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSS--EEEEEEETTTT------------------------H
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcC--cEEEEEeCCCC------------------------H
Confidence 578999999999999 9999898 888888887654 88888876533 7
Q ss_pred HHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccC
Q 015833 104 ALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 183 (399)
Q Consensus 104 ~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~ 183 (399)
.++++|+|.++|+++++. +|++.... |. .+.+.+... .. ..++ |....-
T Consensus 80 ~l~~~~~v~~~Pt~~~~~----~g~~~~~~--------G~----~~~~~l~~~---i~---------~~~~---~~~~~l 128 (350)
T 1sji_A 80 KLAKKLGFDEEGSLYVLK----GDRTIEFD--------GE----FAADVLVEF---LL---------DLIE---DPVEII 128 (350)
T ss_dssp HHHHHHTCCSTTEEEEEE----TTEEEEEC--------SC----CCHHHHHHH---HH---------TTSS---CSEEEC
T ss_pred HHHHhcCCCccceEEEEE----CCcEEEec--------CC----CCHHHHHHH---HH---------HhcC---Ccceec
Confidence 899999999999999995 67643221 11 112212111 11 1111 111100
Q ss_pred CCCCceee-ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 015833 184 HPPDEKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 262 (399)
Q Consensus 184 ~~g~~~~~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 262 (399)
.+.+ .+. +-....+.++|.|+++||.. ..+.+.++++.+++. +.+..+ . +
T Consensus 129 ~~~~-~~~~~~~~~~~~~vv~ff~~~~~~---~~~~~~~~A~~~~~~----------~~f~~~--~-~------------ 179 (350)
T 1sji_A 129 NSKL-EVQAFERIEDQIKLIGFFKSEESE---YYKAFEEAAEHFQPY----------IKFFAT--F-D------------ 179 (350)
T ss_dssp CSHH-HHHHHHHCCSSCEEEEECSCTTSH---HHHHHHHHHHHTTTT----------SEEEEE--C-C------------
T ss_pred cchH-HHHHHhccCCCcEEEEEECCCCcH---HHHHHHHHHHhhccC----------cEEEEE--C-C------------
Confidence 0000 110 00012346788899988644 456788888877643 444443 1 2
Q ss_pred CcccccCCchhHHHHHhCCCCccceEEEECC
Q 015833 263 WLALPFGDPTIKELTKYFDVQGIPCLVIIGP 293 (399)
Q Consensus 263 ~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~ 293 (399)
..+++.|++. .|+++++.+
T Consensus 180 -----------~~~~~~~~v~-~p~i~~~~~ 198 (350)
T 1sji_A 180 -----------KGVAKKLSLK-MNEVDFYEP 198 (350)
T ss_dssp -----------HHHHHHHTCC-TTCEEEECT
T ss_pred -----------HHHHHHcCCC-CCcEEEEeC
Confidence 5688899999 999999965
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=106.05 Aligned_cols=71 Identities=25% Similarity=0.521 Sum_probs=61.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++. ++.++.|++|.+ ..
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~ 78 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP-----------NAVFLKVDVDEL-----------------------KP 78 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CcEEEEEECCCC-----------------------HH
Confidence 47899999999999999999999999888764 478888888754 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 79 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 103 (122)
T 2vlu_A 79 IAEQFSVEAMPTFLFM-KEGDVKDRV 103 (122)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCcccEEEEE-eCCEEEEEE
Confidence 8999999999999888 899998763
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-13 Score=107.28 Aligned_cols=72 Identities=26% Similarity=0.498 Sum_probs=61.2
Q ss_pred ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 194 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 194 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
+.++++++|+||++||++|+.+.|.+.++++++ ++.++.|++|..
T Consensus 30 ~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~------------~~~~~~vd~~~~----------------------- 74 (117)
T 2xc2_A 30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY------------DAIFVKVDVDKL----------------------- 74 (117)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS------------SSEEEEEETTTS-----------------------
T ss_pred hCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc------------CcEEEEEECCcc-----------------------
Confidence 346899999999999999999999999887665 267888887754
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
..+++.|+|.++|+++++ ++|+++.+.
T Consensus 75 ~~~~~~~~v~~~Pt~~~~-~~G~~~~~~ 101 (117)
T 2xc2_A 75 EETARKYNISAMPTFIAI-KNGEKVGDV 101 (117)
T ss_dssp HHHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHHHcCCCccceEEEE-eCCcEEEEE
Confidence 678999999999998888 899998763
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=101.89 Aligned_cols=72 Identities=19% Similarity=0.423 Sum_probs=62.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+ ..
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 63 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG----------KIAVYKLNTDEA-----------------------PG 63 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC----------ceEEEEEcCcch-----------------------HH
Confidence 368999999999999999999999999988764 378888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 64 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 88 (105)
T 1fb6_A 64 IATQYNIRSIPTVLFF-KNGERKESI 88 (105)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHhCCCCcccEEEEE-eCCeEEEEE
Confidence 8999999999999888 799988763
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=102.81 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=62.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++.+++.+ ++.++.|++|.+ ..
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 63 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG----------KLLVAKLDVDEN-----------------------PK 63 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT----------TBEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC----------ceEEEEEECCCC-----------------------Hh
Confidence 478999999999999999999999999988764 478888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.|++.++|+++++ ++|+++.+
T Consensus 64 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (109)
T 2yzu_A 64 TAMRYRVMSIPTVILF-KDGQPVEV 87 (109)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHhCCCCcCCEEEEE-eCCcEeee
Confidence 8999999999999999 89998876
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=100.98 Aligned_cols=71 Identities=17% Similarity=0.443 Sum_probs=62.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.+.++.++++ ++.++.|++|.+ ..
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~-----------------------~~ 60 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-----------QVGFGKLNSDEN-----------------------PD 60 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC-----------CceEEEEECCCC-----------------------HH
Confidence 47899999999999999999999999887764 378888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 61 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 85 (104)
T 2e0q_A 61 IAARYGVMSLPTVIFF-KDGEPVDEI 85 (104)
T ss_dssp HHHHTTCCSSCEEEEE-ETTEEEEEE
T ss_pred HHHhCCccccCEEEEE-ECCeEhhhc
Confidence 8999999999999999 899988763
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-13 Score=107.85 Aligned_cols=72 Identities=21% Similarity=0.434 Sum_probs=63.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++++++.++ ++.++.|++|.+ ..
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~~ 79 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD---------KVGFYKVDVDEQ-----------------------SQ 79 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH---------HSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC---------cEEEEEEECcCC-----------------------HH
Confidence 4789999999999999999999999999888764 578999988855 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.|+|.++|+++++ ++|+++.+
T Consensus 80 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 103 (121)
T 2j23_A 80 IAQEVGIRAMPTFVFF-KNGQKIDT 103 (121)
T ss_dssp HHHHHTCCSSSEEEEE-ETTEEEEE
T ss_pred HHHHcCCCcccEEEEE-ECCeEEee
Confidence 8999999999999999 69998876
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.7e-13 Score=105.79 Aligned_cols=71 Identities=25% Similarity=0.512 Sum_probs=61.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+|++++|+||++||++|+.+.|.|.++++++. ++.++.|++|.+ .+
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~-----------~v~~~~vd~~~~-----------------------~~ 74 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-----------DVRFVKCDVDES-----------------------PD 74 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------HH
Confidence 47899999999999999999999999888764 478888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 75 l~~~~~v~~~Pt~~~~-~~G~~~~~~ 99 (114)
T 2oe3_A 75 IAKECEVTAMPTFVLG-KDGQLIGKI 99 (114)
T ss_dssp HHHHTTCCSBSEEEEE-ETTEEEEEE
T ss_pred HHHHCCCCcccEEEEE-eCCeEEEEE
Confidence 8999999999999888 899998763
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-13 Score=112.36 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=75.5
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
+..+++..+.+.+++.+.....++|+++|+||++||++|+.+.|.|+++++++++. +.++.|+.|..
T Consensus 32 ~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~---------- 98 (148)
T 3p2a_A 32 GHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAE---------- 98 (148)
T ss_dssp CCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC----------
T ss_pred CCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCC----------
Confidence 44556666777777665544467899999999999999999999999999998654 88888877643
Q ss_pred CCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 89 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 89 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..++++|+|.++|++++++ +|+++.+
T Consensus 99 --------------~~l~~~~~v~~~Pt~~~~~----~G~~~~~ 124 (148)
T 3p2a_A 99 --------------PALSTRFRIRSIPTIMLYR----NGKMIDM 124 (148)
T ss_dssp --------------HHHHHHTTCCSSSEEEEEE----TTEEEEE
T ss_pred --------------HHHHHHCCCCccCEEEEEE----CCeEEEE
Confidence 6788999999999999995 8887754
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=102.17 Aligned_cols=72 Identities=29% Similarity=0.610 Sum_probs=62.0
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
..+++++|+||++||++|+.+.|.+.++.+++. ++.++.|++|.. .
T Consensus 17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~-----------------------~ 62 (104)
T 2vim_A 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-----------EVEFAKVDVDQN-----------------------E 62 (104)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------H
T ss_pred cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-----------CCEEEEEeccCC-----------------------H
Confidence 357899999999999999999999999888764 478888888754 6
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++.|++.++|+++++ ++|+++.+.
T Consensus 63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~ 88 (104)
T 2vim_A 63 EAAAKYSVTAMPTFVFI-KDGKEVDRF 88 (104)
T ss_dssp HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHHcCCccccEEEEE-eCCcEEEEE
Confidence 78999999999999888 699988764
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-14 Score=116.12 Aligned_cols=81 Identities=25% Similarity=0.467 Sum_probs=66.3
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 265 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 265 (399)
.+++...+||+++|+||++||++|+.+.|.+ .++.+.+.. ++.++.|++|.+.
T Consensus 11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~-------------- 66 (130)
T 2lst_A 11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA----------RFVVASVSVDTPE-------------- 66 (130)
Confidence 6777778899999999999999999999999 888877654 3667777765332
Q ss_pred cccCCchhHHHHHhCCCCccceEEEECC-CCcE--Eec
Q 015833 266 LPFGDPTIKELTKYFDVQGIPCLVIIGP-EGKT--VTK 300 (399)
Q Consensus 266 ~p~~~d~~~~~~~~~~v~~~P~~~lid~-~G~i--~~~ 300 (399)
...+++.|+|.++|+++++|+ +|++ +.+
T Consensus 67 -------~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~ 97 (130)
T 2lst_A 67 -------GQELARRYRVPGTPTFVFLVPKAGAWEEVGR 97 (130)
Confidence 367899999999999999995 5888 665
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=104.48 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=61.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-----------~v~~~~vd~~~~-----------------------~~ 70 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----------KMVFIKVDVDEV-----------------------SE 70 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTT-----------------------HH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-----------CCEEEEEECCCC-----------------------HH
Confidence 57899999999999999999999999988764 478888888755 57
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 71 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 95 (112)
T 1syr_A 71 VTEKENITSMPTFKVY-KNGSSVDTL 95 (112)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCcccEEEEE-ECCcEEEEE
Confidence 8999999999998888 799988763
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=120.64 Aligned_cols=67 Identities=27% Similarity=0.505 Sum_probs=58.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+|||+||++|+.++|.|.++++.+++. +.++.|++|.+. ...++++|+
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~----------------------~~~l~~~~~ 88 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNK----------------------NKALCAKYD 88 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTT----------------------THHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCcc----------------------CHHHHHhCC
Confidence 4789999999999999999999999999998654 888888887331 278999999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|++++++.
T Consensus 89 I~~~Pt~~~~~~ 100 (298)
T 3ed3_A 89 VNGFPTLMVFRP 100 (298)
T ss_dssp CCBSSEEEEEEC
T ss_pred CCccceEEEEEC
Confidence 999999999984
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=103.45 Aligned_cols=71 Identities=25% Similarity=0.568 Sum_probs=62.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++.+++. ++.++.|++|.. ..
T Consensus 25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~v~~~~v~~~~~-----------------------~~ 70 (113)
T 1ti3_A 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----------NVTFLKVDVDEL-----------------------KA 70 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTC-----------------------HH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-----------CcEEEEEEcccc-----------------------HH
Confidence 47899999999999999999999999887764 478888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 71 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 95 (113)
T 1ti3_A 71 VAEEWNVEAMPTFIFL-KDGKLVDKT 95 (113)
T ss_dssp HHHHHHCSSTTEEEEE-ETTEEEEEE
T ss_pred HHHhCCCCcccEEEEE-eCCEEEEEE
Confidence 8899999999999999 799998764
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=105.97 Aligned_cols=72 Identities=31% Similarity=0.555 Sum_probs=62.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++.+++.+ ++.++.|++|.+ ..
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 75 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERAT----------DLTVAKLDVDTN-----------------------PE 75 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HH
Confidence 478999999999999999999999999988753 478888888755 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 76 ~~~~~~i~~~Pt~~~~-~~g~~~~~~ 100 (121)
T 2i1u_A 76 TARNFQVVSIPTLILF-KDGQPVKRI 100 (121)
T ss_dssp HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHhcCCCcCCEEEEE-ECCEEEEEe
Confidence 8999999999999999 699988763
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=106.62 Aligned_cols=82 Identities=9% Similarity=0.106 Sum_probs=64.2
Q ss_pred EecCCCCEEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcC--CCcEEEEEEecCCChHHHHHhHhcCCCcc
Q 015833 17 STKEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN--GSDFEVVFVSSDEDLNAFNNYRACMPWLA 93 (399)
Q Consensus 17 l~d~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~--~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~ 93 (399)
+.+++++.+...-. .+++++|+|||+||++|+.+.|.+.++++.+... ..++.++.|+.|..
T Consensus 17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~--------------- 81 (127)
T 3h79_A 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY--------------- 81 (127)
T ss_dssp CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC---------------
T ss_pred eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc---------------
Confidence 34445544333222 4899999999999999999999999999988632 23588888876533
Q ss_pred cccCChHHHHHHHhhcCCCCcCeEEEEcC
Q 015833 94 VPYSDLETKKALNRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 94 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~ 122 (399)
.+++++|+|.++|++++++.
T Consensus 82 ---------~~l~~~~~v~~~Pt~~~~~~ 101 (127)
T 3h79_A 82 ---------PDVIERMRVSGFPTMRYYTR 101 (127)
T ss_dssp ---------HHHHHHTTCCSSSEEEEECS
T ss_pred ---------HhHHHhcCCccCCEEEEEeC
Confidence 78899999999999999986
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=102.62 Aligned_cols=74 Identities=22% Similarity=0.455 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++.+++... ..++.++.|++|.+ ..+
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~l 70 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPG-------LAGVKIAEVDCTAE-----------------------RNI 70 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC--------CCEEEEEEETTTC-----------------------HHH
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhcc-------CCceEEEEEecccc-----------------------HhH
Confidence 789999999999999999999999998876432 23678888887755 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++|+++++ ++|+++.+.
T Consensus 71 ~~~~~v~~~Pt~~~~-~~g~~~~~~ 94 (111)
T 3uvt_A 71 CSKYSVRGYPTLLLF-RGGKKVSEH 94 (111)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHhcCCCcccEEEEE-eCCcEEEec
Confidence 999999999999999 889887663
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.36 E-value=9e-13 Score=108.67 Aligned_cols=78 Identities=26% Similarity=0.406 Sum_probs=66.3
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHH--HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLV--DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~--~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
.+||+++|+||++||++|+.+.|.|. ++++.+++. +.++.|+++.. + ....+++
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~-------------------~--~~~~l~~ 82 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNF-------------------D--RNLELSQ 82 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTT-------------------T--SSHHHHH
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcc-------------------c--chHHHHH
Confidence 46999999999999999999999999 999998653 88998987421 1 1278899
Q ss_pred hcCC---CCcCeEEEEcCCCCCCCeeeccc
Q 015833 108 KFDI---EGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 108 ~~~v---~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
.|+| .++|+++++|+ +|+++....
T Consensus 83 ~~~v~~~~~~Pt~~~~d~---~G~~~~~~~ 109 (133)
T 3fk8_A 83 AYGDPIQDGIPAVVVVNS---DGKVRYTTK 109 (133)
T ss_dssp HTTCGGGGCSSEEEEECT---TSCEEEECC
T ss_pred HhCCccCCccceEEEECC---CCCEEEEec
Confidence 9999 99999999999 999987643
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=103.41 Aligned_cols=71 Identities=27% Similarity=0.544 Sum_probs=61.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++.++++ ++.++.|++|.. ..
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~-----------------------~~ 72 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-----------GAIFLKVDVDEL-----------------------KD 72 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----------CcEEEEEEcccC-----------------------HH
Confidence 47899999999999999999999999988764 478888888754 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 73 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 97 (118)
T 2vm1_A 73 VAEAYNVEAMPTFLFI-KDGEKVDSV 97 (118)
T ss_dssp HHHHTTCCSBSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCcCcEEEEE-eCCeEEEEe
Confidence 8999999999999999 899988763
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.3e-13 Score=109.49 Aligned_cols=85 Identities=13% Similarity=0.298 Sum_probs=65.1
Q ss_pred CCeEEecCCCCEEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCC
Q 015833 13 RRMTSTKEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW 91 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~ 91 (399)
++-.+.+++++.+..... ++|+++|+||++||++|+.+.|.|.++++++++.+ ++.++.|+.+..
T Consensus 5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~-~~~~~~vd~~~~------------- 70 (133)
T 2dj3_A 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIAKMDATAN------------- 70 (133)
T ss_dssp SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSS-SEEEEEECTTTS-------------
T ss_pred CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-CEEEEEecCCcC-------------
Confidence 333445556665554433 48999999999999999999999999999997532 488887766533
Q ss_pred cccccCChHHHHHHHhhcCCCCcCeEEEEcC
Q 015833 92 LAVPYSDLETKKALNRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 92 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~ 122 (399)
..++++|+|.++|++++++.
T Consensus 71 -----------~~~~~~~~v~~~Pt~~~~~~ 90 (133)
T 2dj3_A 71 -----------DITNDQYKVEGFPTIYFAPS 90 (133)
T ss_dssp -----------CCCCSSCCCSSSSEEEEECT
T ss_pred -----------HHHHhhcCCCcCCEEEEEeC
Confidence 33456799999999999986
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-12 Score=104.90 Aligned_cols=71 Identities=27% Similarity=0.463 Sum_probs=61.4
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
++.++|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.+ ..+
T Consensus 50 ~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~l 96 (140)
T 1v98_A 50 APLTLVDFFAPWCGPCRLVSPILEELARDHAG----------RLKVVKVNVDEH-----------------------PGL 96 (140)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------HHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHccC----------ceEEEEEECCCC-----------------------HHH
Confidence 33399999999999999999999999988764 488888888755 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++|+++++ ++|+++.+.
T Consensus 97 ~~~~~v~~~Pt~~~~-~~G~~~~~~ 120 (140)
T 1v98_A 97 AARYGVRSVPTLVLF-RRGAPVATW 120 (140)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHCCCCccCEEEEE-eCCcEEEEE
Confidence 999999999999999 899988763
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-12 Score=106.97 Aligned_cols=71 Identities=18% Similarity=0.396 Sum_probs=61.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. .+++++|+
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~------------------------~~~~~~~~ 74 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV------------------------PDFNKMYE 74 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC------------------------CTTTTSSC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccC------------------------HHHHHHcC
Confidence 4899999999999999999999999999998653 89999988744 44678899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+.+..
T Consensus 75 i~~~Pt~~~~~----~G~~v~~ 92 (142)
T 1qgv_A 75 LYDPCTVMFFF----RNKHIMI 92 (142)
T ss_dssp SCSSCEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEE----CCcEEEE
Confidence 99999999996 7877754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=120.08 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=64.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++|+|+|+||++||++|+.+.|.+.++++++++ ++.++.|++|.+ ..
T Consensus 25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 71 (287)
T 3qou_A 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNG----------QFILAKLDCDAE-----------------------QM 71 (287)
T ss_dssp TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS----------SSEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC----------CeEEEEEeCccC-----------------------HH
Confidence 489999999999999999999999999999874 378888888855 68
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+++.+.
T Consensus 72 ~~~~~~v~~~Pt~~~~-~~G~~~~~~ 96 (287)
T 3qou_A 72 IAAQFGLRAIPTVYLF-QNGQPVDGF 96 (287)
T ss_dssp HHHTTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHHcCCCCCCeEEEE-ECCEEEEEe
Confidence 9999999999999999 899988764
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=111.03 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=62.2
Q ss_pred eccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 26 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 26 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
.+++++||+++|+|||+|||+|+.++|.|.++++.+. ++.++.|+.|. ..++
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~----~v~~~~v~~d~------------------------~~~~ 99 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGR------------------------AEDD 99 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHH------------------------HHHH
T ss_pred HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CcEEEEEECCC------------------------CHHH
Confidence 3566789999999999999999999999999998753 38888885542 2556
Q ss_pred HhhcC---CCCcCeEEEEcCCCCCCCeeec
Q 015833 106 NRKFD---IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 106 ~~~~~---v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+.|. +.++|++++++. +|+++.+
T Consensus 100 ~~~~~~~~v~~iPt~i~~~~---~G~~~~~ 126 (167)
T 1z6n_A 100 LRQRLALERIAIPLVLVLDE---EFNLLGR 126 (167)
T ss_dssp TTTTTTCSSCCSSEEEEECT---TCCEEEE
T ss_pred HHHHHHcCCCCcCeEEEECC---CCCEEEE
Confidence 66675 999999999998 8888754
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=103.67 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=61.0
Q ss_pred CCCCCceeecc-ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 015833 183 GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261 (399)
Q Consensus 183 ~~~g~~~~~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 261 (399)
..+++ .+... ..++++++|+||++||++|+.+.|.|.++++++++. ....++.++.|+++...
T Consensus 11 ~l~~~-~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-----~~~~~v~~~~vd~~~~~---------- 74 (121)
T 2djj_A 11 VVVAK-NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKS-----EFKDRVVIAKVDATAND---------- 74 (121)
T ss_dssp ECCTT-TTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTS-----SCTTSSEEEEEETTTSC----------
T ss_pred Eeccc-CHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhc-----ccCCceEEEEEECcccc----------
Confidence 44455 44433 236799999999999999999999999999998751 00014778877776431
Q ss_pred CCcccccCCchhHHHHHhCCCCccceEEEECCCCcE
Q 015833 262 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 262 ~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
+++ +|.++||+++++++|++
T Consensus 75 --------------~~~--~v~~~Pt~~~~~~~~~~ 94 (121)
T 2djj_A 75 --------------VPD--EIQGFPTIKLYPAGAKG 94 (121)
T ss_dssp --------------CSS--CCSSSSEEEEECSSCTT
T ss_pred --------------ccc--ccCcCCeEEEEeCcCCC
Confidence 222 89999999999888773
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=107.18 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=65.8
Q ss_pred cCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCC
Q 015833 19 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 98 (399)
Q Consensus 19 d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d 98 (399)
+++++.+...-.++|+++|+||++||++|+.+.|.|.++++.+++.+.++.++.|+.+..
T Consensus 21 ~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------- 80 (140)
T 2dj1_A 21 VLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA-------------------- 80 (140)
T ss_dssp ECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC--------------------
T ss_pred EcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc--------------------
Confidence 344443333223689999999999999999999999999999987655578887765432
Q ss_pred hHHHHHHHhhcCCCCcCeEEEEcCCCCCCCe
Q 015833 99 LETKKALNRKFDIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 99 ~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i 129 (399)
..++++|+|.++|+++++ . +|++
T Consensus 81 ----~~~~~~~~v~~~Pt~~~~-~---~G~~ 103 (140)
T 2dj1_A 81 ----SMLASKFDVSGYPTIKIL-K---KGQA 103 (140)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-E---TTEE
T ss_pred ----HHHHHHCCCCccCeEEEE-E---CCcE
Confidence 778899999999999999 4 7773
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=105.22 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=61.4
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
+.++|+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. ..++++
T Consensus 28 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~------------------------~~l~~~ 79 (116)
T 3qfa_C 28 AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDC------------------------QDVASE 79 (116)
T ss_dssp HHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTTT------------------------HHHHHH
T ss_pred hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC------------------------HHHHHH
Confidence 34799999999999999999999999999888743 78888877543 788999
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++|+++++ + +|+++..
T Consensus 80 ~~v~~~Pt~~~~-~---~G~~~~~ 99 (116)
T 3qfa_C 80 CEVKSMPTFQFF-K---KGQKVGE 99 (116)
T ss_dssp TTCCSSSEEEEE-S---SSSEEEE
T ss_pred cCCccccEEEEE-e---CCeEEEE
Confidence 999999999999 5 8887754
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=115.53 Aligned_cols=91 Identities=19% Similarity=0.412 Sum_probs=72.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|+++|+||++||++|+.+.|.|.++++++++ .+.++.|++|.+ ..
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----------~v~~~~vd~d~~-----------------------~~ 75 (222)
T 3dxb_A 29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PG 75 (222)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------TT
T ss_pred cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECCCC-----------------------HH
Confidence 478999999999999999999999999998864 378999988855 56
Q ss_pred HHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhcc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN 334 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~ 334 (399)
+++.|+|.++||++++ ++|+++.+.. |. .+ .+.|.+.+++.+..
T Consensus 76 l~~~~~v~~~Pt~~~~-~~G~~~~~~~-------G~----~~---~~~l~~~l~~~l~~ 119 (222)
T 3dxb_A 76 TAPKYGIRGIPTLLLF-KNGEVAATKV-------GA----LS---KGQLKEFLDANLAG 119 (222)
T ss_dssp TGGGGTCCSBSEEEEE-ETTEEEEEEE-------SC----CC---HHHHHHHHHHHSCC
T ss_pred HHHHcCCCcCCEEEEE-ECCeEEEEec-------cc----cC---hHHHHHHHHhhccc
Confidence 7889999999999999 6899887632 21 12 35666666666543
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=104.59 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=58.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+|||+||++|+.+.|.|++++++|. ++.++.|++|..
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-----------~v~f~kvd~d~~-------------------------- 65 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-----------ETKFVKAIVNSC-------------------------- 65 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-----------TSEEEEEEGGGT--------------------------
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-----------CCEEEEEEhHHh--------------------------
Confidence 4589999999999999999999999998875 467777776621
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+..|+|.++||++++ ++|+.+.+..+
T Consensus 66 ~~~~~v~~~PT~~~f-k~G~~v~~~~G 91 (118)
T 3evi_A 66 IQHYHDNCLPTIFVY-KNGQIEAKFIG 91 (118)
T ss_dssp STTCCGGGCSEEEEE-ETTEEEEEEES
T ss_pred HHHCCCCCCCEEEEE-ECCEEEEEEeC
Confidence 367899999999999 99999988443
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=102.45 Aligned_cols=71 Identities=24% Similarity=0.413 Sum_probs=62.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.+++++++++ +.++.|+.|.. .+++++|+
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 68 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDEN------------------------QETAGKYG 68 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTC------------------------CSHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence 7899999999999999999999999999998753 88999987644 45778999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+++..
T Consensus 69 v~~~Pt~~~~-~---~G~~~~~ 86 (112)
T 2voc_A 69 VMSIPTLLVL-K---DGEVVET 86 (112)
T ss_dssp CCSBSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCEEEEE
Confidence 9999999999 6 9988754
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=102.02 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=61.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++.+++. ++.++.|++|.. .+
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~v~~~~vd~~~~-----------------------~~ 63 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-----------QVAISSVDSEAR-----------------------PE 63 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-----------TSCEEEEEGGGC-----------------------HH
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-----------CcEEEEEcCcCC-----------------------HH
Confidence 46899999999999999999999998877653 467888887644 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 64 l~~~~~v~~~Pt~~~~-~~G~~v~~~ 88 (110)
T 2l6c_A 64 LMKELGFERVPTLVFI-RDGKVAKVF 88 (110)
T ss_dssp HHHHTTCCSSCEEEEE-ESSSEEEEE
T ss_pred HHHHcCCcccCEEEEE-ECCEEEEEE
Confidence 8999999999999999 999998774
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=108.18 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=62.7
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
-++++++|+||++||++|+.+.|.|.++++++.+. ++.++.|++|.. .
T Consensus 24 ~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~-----------------------~ 71 (137)
T 2dj0_A 24 DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT---------GLNFGKVDVGRY-----------------------T 71 (137)
T ss_dssp STTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS---------SCEEEECCTTTC-----------------------H
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---------CeEEEEEeCccC-----------------------H
Confidence 34569999999999999999999999999998642 577777776644 6
Q ss_pred HHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 275 ELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 275 ~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
.+++.|+|. ++||++++ ++|+++.+..
T Consensus 72 ~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~ 104 (137)
T 2dj0_A 72 DVSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRP 104 (137)
T ss_dssp HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEES
T ss_pred HHHHHccCcccCCcCCCCEEEEE-ECCEEEEEec
Confidence 788899998 99999999 8999887643
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=106.56 Aligned_cols=70 Identities=20% Similarity=0.391 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCC--cccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 32 GKVTALYFSANWY--PPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 32 gk~vlv~F~a~wC--~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
+++|||+|||+|| ++|+.+.|.|.+++++|.++ +.++.|++|+ +.+++.+|
T Consensus 33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe------------------------~~~la~~y 85 (137)
T 2qsi_A 33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEA------------------------ERGLMARF 85 (137)
T ss_dssp SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGG------------------------HHHHHHHH
T ss_pred CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCC------------------------CHHHHHHc
Confidence 3499999999999 99999999999999998654 8999896653 38999999
Q ss_pred CCCCcCeEEEEcCCCCCCCeeec
Q 015833 110 DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|+++||++++. +|+.+.+
T Consensus 86 gV~siPTlilFk----dG~~v~~ 104 (137)
T 2qsi_A 86 GVAVCPSLAVVQ----PERTLGV 104 (137)
T ss_dssp TCCSSSEEEEEE----CCEEEEE
T ss_pred CCccCCEEEEEE----CCEEEEE
Confidence 999999999997 8988866
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=109.79 Aligned_cols=121 Identities=10% Similarity=0.245 Sum_probs=92.3
Q ss_pred cccccccccCCeEEecCCC-CEEeccc-cCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEE-EEEEecCCCh
Q 015833 4 SQWYVQQLRRRMTSTKEIG-EEVKVSD-LEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFE-VVFVSSDEDL 79 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G-~~v~l~~-~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~-ii~Vs~D~~~ 79 (399)
++.++|..+|+|+|++..+ ++++|++ ++||+++|+|| +.|||.|..+++.+++.+++|++.| ++ |++||.|..
T Consensus 12 ~~~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS~D~~- 88 (171)
T 2xhf_A 12 SPIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIAVNDP- 88 (171)
T ss_dssp CCCCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEESSCH-
T ss_pred CcccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCCH-
Confidence 4567899999999994432 8999999 59999999998 8899999999999999999999887 85 999999854
Q ss_pred HHHHHhHhcCCC--cccccCChHHHHHHHhhcCCC-----------CcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPW--LAVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+.+++.++.+. .+...+|. ..++++.||+. ....+++|+ +|+|....
T Consensus 89 ~~~~~w~~~~~~~~~f~lLSD~--~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId----dG~V~~~~ 149 (171)
T 2xhf_A 89 FVMAAWGKTVDPEHKIRMLADM--HGEFTRALGTELDSSKMLGNNRSRRYAMLID----DNKIRSVS 149 (171)
T ss_dssp HHHHHHHHHHCTTCCSEEEECT--TSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE----TTEEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEEeC--CchHHHHhCCceeccccCCCcceEEEEEEEe----CCEEEEEE
Confidence 444555554332 12223453 37889999873 245778886 89888654
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=103.46 Aligned_cols=68 Identities=18% Similarity=0.390 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|+.|.. ..++++|+
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~l~~~~~ 86 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKH------------------------QSLGGQYG 86 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCC------------------------HHHHHHcC
Confidence 4789999999999999999999999999998653 78888876543 67889999
Q ss_pred CCCcCeEEEEcCCCCCCC
Q 015833 111 IEGIPCLVVLQPYDDKDD 128 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~ 128 (399)
|.++|++++++. +|.
T Consensus 87 v~~~Pt~~~~~~---~~~ 101 (130)
T 2dml_A 87 VQGFPTIKIFGA---NKN 101 (130)
T ss_dssp CCSSSEEEEESS---CTT
T ss_pred CCccCEEEEEeC---CCC
Confidence 999999999997 766
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=107.25 Aligned_cols=72 Identities=22% Similarity=0.509 Sum_probs=58.4
Q ss_pred CCcEEEEEEecCCCh--------------hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 015833 196 VGKTVGLYFSARWCI--------------PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261 (399)
Q Consensus 196 ~gk~vll~F~a~wC~--------------~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 261 (399)
.||+++|+||++||+ +|+.+.|.+.+++++++++ +.++.|++|.+
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~----------~~~~~vd~d~~----------- 78 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK----------LTVAKLNIDQN----------- 78 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-----------------CEEEEEETTSC-----------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------
Confidence 479999999999999 9999999999999888643 78888888755
Q ss_pred CCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 262 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 262 ~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
..+++.|+|.++|+++++ ++|+++.+.
T Consensus 79 ------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 105 (123)
T 1oaz_A 79 ------------PGTAPKYGIRGIPTLLLF-KNGEVAATK 105 (123)
T ss_dssp ------------TTTGGGGTCCBSSEEEEE-ESSSEEEEE
T ss_pred ------------HHHHHHcCCCccCEEEEE-ECCEEEEEE
Confidence 568899999999999999 999998763
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=112.93 Aligned_cols=163 Identities=13% Similarity=0.103 Sum_probs=103.1
Q ss_pred CCCEEEEEEecCCCcccHhhH------HHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHH
Q 015833 31 EGKVTALYFSANWYPPCGNFT------GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 104 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 104 (399)
++++++|+|||+||++|.... |.++++++.+++. ++.++.|+.+.. ..
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~--~v~~~~Vd~~~~------------------------~~ 82 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK--GVGFGLVDSEKD------------------------AA 82 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTT------------------------HH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC--CceEEEEeCccc------------------------HH
Confidence 478999999999999974332 6888999988754 388888866533 78
Q ss_pred HHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCC
Q 015833 105 LNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH 184 (399)
Q Consensus 105 l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~ 184 (399)
++++|+|+++||++++. +|+.+... |. .+.+.+...... .++ |....-.
T Consensus 83 l~~~~~V~~~PTl~~f~----~G~~~~y~--------G~----~~~~~i~~~i~~------------~~~---~~v~~i~ 131 (367)
T 3us3_A 83 VAKKLGLTEEDSIYVFK----EDEVIEYD--------GE----FSADTLVEFLLD------------VLE---DPVELIE 131 (367)
T ss_dssp HHHHHTCCSTTEEEEEE----TTEEEECC--------SC----CSHHHHHHHHHH------------HHS---CSEEECC
T ss_pred HHHHcCCCcCceEEEEE----CCcEEEeC--------CC----CCHHHHHHHHHH------------hcC---CCcEEcC
Confidence 99999999999999997 67654221 11 122222222111 111 1111000
Q ss_pred CCCceeecccc---CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 015833 185 PPDEKVPVSSL---VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261 (399)
Q Consensus 185 ~g~~~~~l~~~---~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 261 (399)
+.. . +..+ ..++++|.|+++||. ...+.+.+++..+++. +.+..+ . +
T Consensus 132 ~~~-~--~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~----------~~F~~~--~-~----------- 181 (367)
T 3us3_A 132 GER-E--LQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPY----------IPFFAT--F-D----------- 181 (367)
T ss_dssp SHH-H--HHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTT----------SCEEEE--C-C-----------
T ss_pred CHH-H--HHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCC----------cEEEEE--C-C-----------
Confidence 000 1 1111 236788899998875 4456778888888653 344333 2 2
Q ss_pred CCcccccCCchhHHHHHhCCCCccceEEEECC
Q 015833 262 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGP 293 (399)
Q Consensus 262 ~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~ 293 (399)
..+++.|++.. |+++++-+
T Consensus 182 ------------~~~~~~~~v~~-p~i~lf~~ 200 (367)
T 3us3_A 182 ------------SKVAKKLTLKL-NEIDFYEA 200 (367)
T ss_dssp ------------HHHHHHHTCCT-TCEEEECT
T ss_pred ------------HHHHHHcCCCC-CeEEEEcC
Confidence 46788899985 99999955
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=108.81 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+|+|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. .+++++|+
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~ 74 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQT------------------------AVYTQYFD 74 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTC------------------------CHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcC------------------------HHHHHHcC
Confidence 5899999999999999999999999999988653 88888877644 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|.++|+++++ . +|+++
T Consensus 75 v~~~Pt~~~~-~---~G~~v 90 (149)
T 3gix_A 75 ISYIPSTVFF-F---NGQHM 90 (149)
T ss_dssp CCSSSEEEEE-E---TTEEE
T ss_pred CCccCeEEEE-E---CCeEE
Confidence 9999999955 4 88877
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-12 Score=104.71 Aligned_cols=70 Identities=20% Similarity=0.441 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|+.|.. .+++++|+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 89 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKE------------------------QELAGAFG 89 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCC------------------------HHHHHHcC
Confidence 4789999999999999999999999999998643 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|.++|+++++++ +|+++
T Consensus 90 v~~~Pt~~~~~~---~G~~~ 106 (136)
T 2l5l_A 90 IRSIPSILFIPM---EGKPE 106 (136)
T ss_dssp CCSSCEEEEECS---SSCCE
T ss_pred CCCCCEEEEECC---CCcEE
Confidence 999999999988 99876
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-12 Score=101.26 Aligned_cols=76 Identities=16% Similarity=0.407 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.|++++|+||++||++|+.+.|.|.++++++. ..++.++++...+ . +....
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~------------~~v~~~~~~~~~~-~----------------~~~~~ 78 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK------------AHIYFINSEEPSQ-L----------------NDLQA 78 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC------------CCCEEEETTCGGG-H----------------HHHHH
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC------------CeEEEEECCCcCc-H----------------HHHHH
Confidence 46899999999999999999999999988764 3477787764321 0 12367
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+++.+.
T Consensus 79 ~~~~~~i~~~Pt~~~~-~~G~~~~~~ 103 (118)
T 1zma_A 79 FRSRYGIPTVPGFVHI-TDGQINVRC 103 (118)
T ss_dssp HHHHHTCCSSCEEEEE-ETTEEEEEC
T ss_pred HHHHcCCCCCCeEEEE-ECCEEEEEe
Confidence 8899999999999999 689888764
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-12 Score=100.55 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=53.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.+.++++++. ++.++.|+.|.. ..++++|+
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~~~~------------------------~~l~~~~~ 68 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN----YVEKIEILLQDM------------------------QEIAGRYA 68 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT----TEEEEEEEECCC--------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC----CceEEEEECCCC------------------------HHHHHhcC
Confidence 68999999999999999999999999999872 388998887654 57788999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++.+
T Consensus 69 v~~~Pt~~~~~----~G~~~~~ 86 (105)
T 4euy_A 69 VFTGPTVLLFY----NGKEILR 86 (105)
T ss_dssp -CCCCEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEe----CCeEEEE
Confidence 99999999995 8877754
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=100.76 Aligned_cols=70 Identities=17% Similarity=0.380 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.++++++++ +.++.|+.|.. ..++++|+
T Consensus 23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~~------------------------~~l~~~~~ 74 (109)
T 3f3q_A 23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDEL------------------------GDVAQKNE 74 (109)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCC------------------------HHHHHHcC
Confidence 589999999999999999999999999998742 77888876533 77889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++.+
T Consensus 75 v~~~Pt~~~~~----~G~~~~~ 92 (109)
T 3f3q_A 75 VSAMPTLLLFK----NGKEVAK 92 (109)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCccCEEEEEE----CCEEEEE
Confidence 99999999997 7877654
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-12 Score=100.58 Aligned_cols=72 Identities=22% Similarity=0.540 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.+++++++..+ +.++.|+.|.. ..++++|+
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~------------------------~~~~~~~~ 73 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADEN------------------------SEISELFE 73 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTT--SEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCC--EEEEEEecccC------------------------HHHHHHcC
Confidence 48999999999999999999999999999875543 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ . +|+++.+
T Consensus 74 v~~~Pt~~~~-~---~G~~~~~ 91 (112)
T 3d6i_A 74 ISAVPYFIII-H---KGTILKE 91 (112)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-E---CCEEEEE
Confidence 9999999988 4 8887754
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.4e-12 Score=98.39 Aligned_cols=71 Identities=21% Similarity=0.382 Sum_probs=62.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.+++. +.++.|+.|.. ..++++|+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 70 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDEN------------------------PSTAAKYE 70 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcC------------------------HHHHHhCC
Confidence 7899999999999999999999999999998754 88888877644 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|++++++ +|+++..
T Consensus 71 v~~~Pt~~~~~----~G~~~~~ 88 (106)
T 3die_A 71 VMSIPTLIVFK----DGQPVDK 88 (106)
T ss_dssp CCSBSEEEEEE----TTEEEEE
T ss_pred CcccCEEEEEe----CCeEEEE
Confidence 99999999995 7877654
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=112.58 Aligned_cols=70 Identities=16% Similarity=0.354 Sum_probs=60.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+|||+||++|+.+.|.+.++++++.+. ..++.++.|+++.+. ...+
T Consensus 30 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~l 81 (244)
T 3q6o_A 30 RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAW-------RPALYLAALDCAEET---------------------NSAV 81 (244)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGG-------TTTEEEEEEETTSTT---------------------THHH
T ss_pred CCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhc-------cCcEEEEEEeCCchh---------------------hHHH
Confidence 589999999999999999999999999999863 236899999986443 3789
Q ss_pred HHhCCCCccceEEEECCC
Q 015833 277 TKYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~ 294 (399)
++.|+|.++||++++++.
T Consensus 82 ~~~~~v~~~Pt~~~~~~g 99 (244)
T 3q6o_A 82 CRDFNIPGFPTVRFFXAF 99 (244)
T ss_dssp HHHTTCCSSSEEEEECTT
T ss_pred HHHcCCCccCEEEEEeCC
Confidence 999999999999999753
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-12 Score=98.89 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|+++++.+++. +.++.|+.|.. .+++++|+
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~------------------------~~~~~~~~ 68 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN------------------------PETTSQFG 68 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999988643 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 69 v~~~Pt~~~~-~---~G~~~~~ 86 (105)
T 1nsw_A 69 IMSIPTLILF-K---GGRPVKQ 86 (105)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CccccEEEEE-e---CCeEEEE
Confidence 9999999999 6 8887654
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-13 Score=116.23 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=63.4
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHH--hHhcCCCcccccCChHHH
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNN--YRACMPWLAVPYSDLETK 102 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~--~~~~~~~~~~~~~d~~~~ 102 (399)
+..+||+|+|+|||+||++|+.+.+.+ .++.+.+++ ++.++.|++|...+.... ......+..+.. ..+..
T Consensus 43 a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~---~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 118 (172)
T 3f9u_A 43 ARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN---DYVLITLYVDNKTPLTEPVKIMENGTERTLRT-VGDKW 118 (172)
T ss_dssp HHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEETTCCCEEEEEEEEEETTEEEEEEE-HHHHH
T ss_pred HHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC---CEEEEEEecCcccccchhhhhhhcchhhhhhh-hhhhh
Confidence 345799999999999999999975444 555555554 389999999865421000 000111111111 11111
Q ss_pred HHH-HhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 103 KAL-NRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 103 ~~l-~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..+ .+.|+|.++|+++++|+ +|+++..
T Consensus 119 ~~~~~~~~~v~~~Pt~~lid~---~G~~~~~ 146 (172)
T 3f9u_A 119 SYLQRVKFGANAQPFYVLIDN---EGNPLNK 146 (172)
T ss_dssp HHHHHHHHSCCCSSEEEEECT---TSCBSSC
T ss_pred hHHHHHHcCCCCcceEEEECC---CCCEEee
Confidence 233 68899999999999999 9998865
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-12 Score=101.46 Aligned_cols=71 Identities=17% Similarity=0.344 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.+++. +.++.|+.|.. ..++++|+
T Consensus 20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 72 (109)
T 3tco_A 20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDEN------------------------QKIADKYS 72 (109)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccC------------------------HHHHHhcC
Confidence 5899999999999999999999999999998753 78888877543 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 73 i~~~Pt~~~~-~---~g~~~~~ 90 (109)
T 3tco_A 73 VLNIPTTLIF-V---NGQLVDS 90 (109)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred cccCCEEEEE-c---CCcEEEe
Confidence 9999999999 6 8987754
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.2e-12 Score=103.88 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=55.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
|++|+|+||++||++|+.+.|.|.++++++. ++.++.|++|..
T Consensus 30 ~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-----------~v~~~~vd~~~~-------------------------- 72 (135)
T 2dbc_A 30 DLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-----------ETKFVKAIVNSC-------------------------- 72 (135)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEECCSSS--------------------------
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----------CcEEEEEEhhcC--------------------------
Confidence 5799999999999999999999999988763 467777766643
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+.|+|.++||++++ ++|+++.+.
T Consensus 73 ~~~~~i~~~Pt~~~~-~~G~~v~~~ 96 (135)
T 2dbc_A 73 IEHYHDNCLPTIFVY-KNGQIEGKF 96 (135)
T ss_dssp CSSCCSSCCSEEEEE-SSSSCSEEE
T ss_pred cccCCCCCCCEEEEE-ECCEEEEEE
Confidence 157999999999999 599988764
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-12 Score=102.38 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=58.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++ .++|+||++||++|+.+.|.|.++++++++.+ +.++.|++|.. ..++++|+
T Consensus 22 ~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--v~~~~vd~~~~------------------------~~~~~~~~ 74 (126)
T 1x5e_A 22 EG-DWMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQ------------------------PGLSGRFI 74 (126)
T ss_dssp SS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CC-CEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECcCC------------------------HHHHHHcC
Confidence 44 48999999999999999999999999987643 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|.++|+++++ + +|++.
T Consensus 75 v~~~Pt~~~~-~---~G~~~ 90 (126)
T 1x5e_A 75 INALPTIYHC-K---DGEFR 90 (126)
T ss_dssp CCSSSEEEEE-E---TTEEE
T ss_pred CcccCEEEEE-e---CCeEE
Confidence 9999999999 5 88753
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.28 E-value=8.5e-12 Score=98.55 Aligned_cols=71 Identities=21% Similarity=0.467 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|+.|.. ..++++|+
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 71 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG 71 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------------TTHHHHTT
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence 5899999999999999999999999999988653 88888877644 45778999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 72 v~~~Pt~~~~-~---~G~~~~~ 89 (108)
T 2trx_A 72 IRGIPTLLLF-K---NGEVAAT 89 (108)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CcccCEEEEE-e---CCEEEEE
Confidence 9999999999 6 8988754
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.7e-12 Score=98.98 Aligned_cols=71 Identities=24% Similarity=0.410 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|+.|.. .+++++|+
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 74 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDEN------------------------PGTAAKYG 74 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCC------------------------HHHHHhCC
Confidence 4789999999999999999999999999998643 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+++..
T Consensus 75 v~~~Pt~~~~-~---~G~~~~~ 92 (112)
T 1t00_A 75 VMSIPTLNVY-Q---GGEVAKT 92 (112)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCEEEEE
Confidence 9999999888 5 8887644
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-12 Score=109.57 Aligned_cols=118 Identities=9% Similarity=0.152 Sum_probs=90.8
Q ss_pred ccccccCCeEEec--C---------CC----CEEeccc-cCCCEEEEEEe-cCCCcccH-hhHHHHHHHHHHH-hcCCCc
Q 015833 7 YVQQLRRRMTSTK--E---------IG----EEVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEEL-RNNGSD 67 (399)
Q Consensus 7 ~~~~~~p~f~l~d--~---------~G----~~v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~-~~~~~~ 67 (399)
.+|..+|+|+|++ . +| +.++|++ ++||+++|+|| +.|||.|. .+++.+++.++++ ++.|
T Consensus 2 ~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g-- 79 (182)
T 1xiy_A 2 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN-- 79 (182)
T ss_dssp CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--
T ss_pred CCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC--
Confidence 4688999999998 4 67 7999999 69999988888 89999999 9999999999999 8876
Q ss_pred E-EEEEEecCCChHHHHHhHhcCCC-cccccCChHHHHHHHhhcCCC-----------CcCeEEEEcCCCCCCCeeecc
Q 015833 68 F-EVVFVSSDEDLNAFNNYRACMPW-LAVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 68 ~-~ii~Vs~D~~~~~~~~~~~~~~~-~~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+ .|++||.|.. .+..++.++.+. .+...+|.. .++++.||+. .....++|+ +|+|++..
T Consensus 80 ~~~V~gvS~D~~-~~~~~~~~~~~~~~f~lLsD~~--~~~a~~yGv~~~~~~~G~g~~~~R~tfvId----dG~V~~~~ 151 (182)
T 1xiy_A 80 FDDIYCITNNDI-YVLKSWFKSMDIKKIKYISDGN--SSFTDSMNMLVDKSNFFMGMRPWRFVAIVE----NNILVKMF 151 (182)
T ss_dssp CSEEEEEESSCH-HHHHHHHHHTTCCSSEEEECTT--SHHHHHTTCEEECGGGTCCEEECCEEEEEE----TTEEEEEE
T ss_pred CcEEEEEeCCCH-HHHHHHHHHcCCCCceEEEeCc--hHHHHHhCCceeccccCCCCceEEEEEEEc----CCEEEEEE
Confidence 8 4999999854 455666665543 122334533 7889999873 256788886 89988764
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-11 Score=116.27 Aligned_cols=73 Identities=12% Similarity=0.269 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCC---CcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
++++++|+|||+||++|+.+.|.+.++++.+++.. .++.++.|+.+.. ..+++
T Consensus 21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~------------------------~~l~~ 76 (382)
T 2r2j_A 21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH------------------------SDIAQ 76 (382)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC------------------------HHHHH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc------------------------HHHHH
Confidence 57899999999999999999999999999996431 2488888866533 78999
Q ss_pred hcCCCCcCeEEEEcCCCCCCCeee
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~~ 131 (399)
+|+|.++|+++++. +|+++.
T Consensus 77 ~~~v~~~Pt~~~f~----~G~~~~ 96 (382)
T 2r2j_A 77 RYRISKYPTLKLFR----NGMMMK 96 (382)
T ss_dssp HTTCCEESEEEEEE----TTEEEE
T ss_pred hcCCCcCCEEEEEe----CCcEee
Confidence 99999999999886 777653
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=97.27 Aligned_cols=71 Identities=20% Similarity=0.403 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|+.|.. .+++++|+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 70 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES------------------------PNVASEYG 70 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC------------------------HHHHHHCC
Confidence 5789999999999999999999999999998653 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 71 v~~~Pt~~~~-~---~G~~~~~ 88 (107)
T 1dby_A 71 IRSIPTIMVF-K---GGKKCET 88 (107)
T ss_dssp CCSSCEEEEE-S---SSSEEEE
T ss_pred CCcCCEEEEE-e---CCEEEEE
Confidence 9999998888 5 8888654
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-12 Score=105.97 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=59.8
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 278 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~ 278 (399)
+++|+||++||++|+.+.|.|.+++++++ +.++.|+++..... ...+....+++
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~------------v~~~~vd~~~~~~~--------------~~~d~~~~l~~ 86 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD------------VPIVMFIWGSLIGE--------------RELSAARLEMN 86 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC------------SCEEEEEECTTCCH--------------HHHHHHHHHHH
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC------------CEEEEEECCCchhh--------------hhhhhhHHHHH
Confidence 89999999999999999999998887652 56888888543211 00123578899
Q ss_pred hCCCCccceEEEECCCCcEEecc
Q 015833 279 YFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 279 ~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.|+|.++||+++++ +|+++.+.
T Consensus 87 ~~~v~~~Pt~~~~~-~G~~v~~~ 108 (135)
T 3emx_A 87 KAGVEGTPTLVFYK-EGRIVDKL 108 (135)
T ss_dssp HHTCCSSSEEEEEE-TTEEEEEE
T ss_pred HcCCceeCeEEEEc-CCEEEEEE
Confidence 99999999999985 99998874
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=97.96 Aligned_cols=70 Identities=9% Similarity=0.130 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.++++++. ++.++.|+.|.. ..++++|+
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~------------------------~~~~~~~~ 71 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQC------------------------QGTAATNN 71 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC----CcEEEEEECccC------------------------HHHHHhcC
Confidence 68999999999999999999999999999872 388888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+.+.+
T Consensus 72 v~~~Pt~~~~-~---~G~~~~~ 89 (107)
T 1gh2_A 72 ISATPTFQFF-R---NKVRIDQ 89 (107)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-E---CCeEEEE
Confidence 9999999999 4 8877653
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=100.20 Aligned_cols=71 Identities=15% Similarity=0.352 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|.+++++++++ +.++.|+.|.. .+++++|+
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~ 82 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDH------------------------TDLAIEYE 82 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTT------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999988643 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+++..
T Consensus 83 v~~~Pt~~~~-~---~G~~~~~ 100 (119)
T 1w4v_A 83 VSAVPTVLAM-K---NGDVVDK 100 (119)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCcEEEE
Confidence 9999999999 6 8987754
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-12 Score=107.26 Aligned_cols=85 Identities=14% Similarity=0.242 Sum_probs=62.1
Q ss_pred EEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccc
Q 015833 16 TSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVP 95 (399)
Q Consensus 16 ~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~ 95 (399)
.+.+.++-.-.+++.+||+++|+||++||++|+.+.|.|.++++.+ ++.++.|+.|..
T Consensus 24 ~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~v~~~~vd~~~~----------------- 81 (133)
T 3cxg_A 24 ELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-----YVTLVDIDVDIH----------------- 81 (133)
T ss_dssp ECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-----ECEEEEEETTTC-----------------
T ss_pred EecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-----CEEEEEEeccch-----------------
Confidence 3333333333355667899999999999999999999998877664 266777765432
Q ss_pred cCChHHHHHHHhhcCCCCcCeEEEE-cCCCCCCC--eeec
Q 015833 96 YSDLETKKALNRKFDIEGIPCLVVL-QPYDDKDD--ATLH 132 (399)
Q Consensus 96 ~~d~~~~~~l~~~~~v~~~P~~~li-d~~~~~G~--i~~~ 132 (399)
.+++++|+|.++|+++++ ++ +|+ ++..
T Consensus 82 -------~~l~~~~~v~~~Pt~~~~~~~---~g~g~~~~~ 111 (133)
T 3cxg_A 82 -------PKLNDQHNIKALPTFEFYFNL---NNEWVLVHT 111 (133)
T ss_dssp -------HHHHHHTTCCSSSEEEEEEEE---TTEEEEEEE
T ss_pred -------HHHHHhcCCCCCCEEEEEEec---CCCeEEEEE
Confidence 778899999999999999 44 554 5543
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=98.88 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=59.5
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
+.+||+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. ...++++
T Consensus 21 ~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~-----------------------~~~~~~~ 73 (111)
T 2pu9_C 21 AAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL----DVIFLKLDCNQE-----------------------NKTLAKE 73 (111)
T ss_dssp TCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST-----------------------THHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC----CeEEEEEecCcc-----------------------hHHHHHH
Confidence 3468999999999999999999999999999875 277888877521 1678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++|++++ .+ +|+++..
T Consensus 74 ~~v~~~Pt~~~-~~---~G~~~~~ 93 (111)
T 2pu9_C 74 LGIRVVPTFKI-LK---ENSVVGE 93 (111)
T ss_dssp HCCSBSSEEEE-ES---SSSEEEE
T ss_pred cCCCeeeEEEE-Ee---CCcEEEE
Confidence 99999999554 46 8988754
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.3e-12 Score=94.08 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=55.4
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
.+++++||++||++|+.+.|.|+++++++.+ ++.++.|++|.+ .+++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~~ 49 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD----------AVEVEYINVMEN-----------------------PQKA 49 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS----------SEEEEEEESSSS-----------------------CCTT
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC----------ceEEEEEECCCC-----------------------HHHH
Confidence 4789999999999999999999999888753 588999988755 4577
Q ss_pred HhCCCCccceEEEECCCCcE
Q 015833 278 KYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i 297 (399)
+.|++.++|++++ +|++
T Consensus 50 ~~~~v~~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 50 MEYGIMAVPTIVI---NGDV 66 (85)
T ss_dssp TSTTTCCSSEEEE---TTEE
T ss_pred HHCCCcccCEEEE---CCEE
Confidence 8899999999988 7887
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.2e-12 Score=94.10 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=54.5
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 278 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~ 278 (399)
+++++||++||++|+.+.|.|+++++++.+ ++.++.|++|.+ .++++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~ 49 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD----------KIDVEKIDIMVD-----------------------REKAI 49 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCS----------SCCEEEECTTTC-----------------------GGGGG
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHHHH
Confidence 468999999999999999999999988863 478888888755 56788
Q ss_pred hCCCCccceEEEECCCCcE
Q 015833 279 YFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 279 ~~~v~~~P~~~lid~~G~i 297 (399)
.|++.++|++++ +|++
T Consensus 50 ~~~v~~~Pt~~~---~G~~ 65 (85)
T 1nho_A 50 EYGLMAVPAIAI---NGVV 65 (85)
T ss_dssp GTCSSCSSEEEE---TTTE
T ss_pred hCCceeeCEEEE---CCEE
Confidence 999999999988 7887
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=97.94 Aligned_cols=71 Identities=24% Similarity=0.463 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.++++ +.++.|++|.. ..++++|+
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 73 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEE------------------------KTLFQRFS 73 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcC------------------------hhHHHhcC
Confidence 5799999999999999999999999999998653 88888877644 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+.+.+
T Consensus 74 v~~~Pt~~~~~----~g~~~~~ 91 (111)
T 3gnj_A 74 LKGVPQILYFK----DGEYKGK 91 (111)
T ss_dssp CCSSCEEEEEE----TTEEEEE
T ss_pred CCcCCEEEEEE----CCEEEEE
Confidence 99999999994 7877643
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-12 Score=103.76 Aligned_cols=93 Identities=18% Similarity=0.354 Sum_probs=68.1
Q ss_pred cccccCCeEEecCCCCEEeccc--cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHh
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSD--LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 85 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~--~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~ 85 (399)
.+...+.+.+.+.+.-.-.+.+ -++|+++|+||++||++|+.+.|.|.++++++++ +.++.|+.|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~------- 76 (122)
T 2vlu_A 8 AAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDEL------- 76 (122)
T ss_dssp ----CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-------
T ss_pred cCCCCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCC-------
Confidence 4455566666554432222222 2689999999999999999999999999988752 77888877643
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..++++|+|.++|+++++ + +|+++.+
T Consensus 77 -----------------~~~~~~~~v~~~Pt~~~~-~---~G~~~~~ 102 (122)
T 2vlu_A 77 -----------------KPIAEQFSVEAMPTFLFM-K---EGDVKDR 102 (122)
T ss_dssp -----------------HHHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred -----------------HHHHHHcCCCcccEEEEE-e---CCEEEEE
Confidence 678899999999998888 5 8887754
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.6e-12 Score=102.72 Aligned_cols=71 Identities=20% Similarity=0.416 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.. .+++++|+
T Consensus 39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 91 (128)
T 2o8v_B 39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG 91 (128)
T ss_dssp CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTC------------------------CTTSGGGT
T ss_pred cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC------------------------HHHHHHcC
Confidence 5899999999999999999999999999998653 89999987644 45678899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+++..
T Consensus 92 v~~~Pt~~~~-~---~G~~~~~ 109 (128)
T 2o8v_B 92 IRGIPTLLLF-K---NGEVAAT 109 (128)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCccCEEEEE-e---CCEEEEE
Confidence 9999999999 6 8988754
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=100.35 Aligned_cols=71 Identities=20% Similarity=0.398 Sum_probs=61.1
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
.++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. .+++++|
T Consensus 36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~vd~d~~------------------------~~l~~~~ 87 (124)
T 1xfl_A 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDEL------------------------KSVASDW 87 (124)
T ss_dssp HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTS------------------------HHHHHHT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECccC------------------------HHHHHHc
Confidence 369999999999999999999999999999874 388888877643 6788999
Q ss_pred CCCCcCeEEEEcCCCCCCCeeec
Q 015833 110 DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++|+++++ + +|+++..
T Consensus 88 ~v~~~Pt~~~~-~---~G~~~~~ 106 (124)
T 1xfl_A 88 AIQAMPTFMFL-K---EGKILDK 106 (124)
T ss_dssp TCCSSSEEEEE-E---TTEEEEE
T ss_pred CCCccCEEEEE-E---CCEEEEE
Confidence 99999998888 5 8888754
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=96.16 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|+.|.. ..++++|+
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~~~ 71 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG---KVTVAKVNIDDN------------------------PETPNAYQ 71 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT---SEEEEEEETTTC------------------------CHHHHHTT
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC---cEEEEEEECCCC------------------------HHHHHhcC
Confidence 589999999999999999999999999999875 388998877643 56788999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 72 v~~~Pt~~~~-~---~G~~~~~ 89 (107)
T 2i4a_A 72 VRSIPTLMLV-R---DGKVIDK 89 (107)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCccCEEEEE-e---CCEEEEE
Confidence 9999999999 6 8988754
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=105.31 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=59.1
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHH---HHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPK---LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 265 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~---l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 265 (399)
.+.....+||+|+|+|||+||++|+.+.+. ..++.+.+.+. +.++.|..|...+-...+.
T Consensus 31 a~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~----------fv~ikVD~de~~~l~~~y~------- 93 (173)
T 3ira_A 31 AFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA----------FVSIKVDREERPDIDNIYM------- 93 (173)
T ss_dssp HHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH----------CEEEEEETTTCHHHHHHHH-------
T ss_pred HHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc----------CceeeeCCcccCcHHHHHH-------
Confidence 344445568999999999999999998883 24566666544 5566665554432111111
Q ss_pred cccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 266 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 266 ~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+...+|+.++|++++++++|+++..
T Consensus 94 --------~~~q~~~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 94 --------TVCQIILGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp --------HHHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred --------HHHHHHcCCCCCcceeeECCCCCceee
Confidence 111223599999999999999999876
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-12 Score=102.64 Aligned_cols=72 Identities=22% Similarity=0.462 Sum_probs=58.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.+.++++++++. +.++.++.|.++.+ ..
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~v~~~~vd~~~~-----------------------~~ 72 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE-------GSEIRLAKVDATEE-----------------------SD 72 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTT-------CCCCBCEEEETTTC-----------------------CS
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhcc-------CCcEEEEEEcCCCC-----------------------HH
Confidence 5789999999999999999999999999888653 23466666665543 46
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+++.|++.++|+++++ ++|+++
T Consensus 73 ~~~~~~v~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 73 LAQQYGVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp SHHHHTCCSSSEEEEE-ESSCSS
T ss_pred HHHHCCCCcccEEEEE-eCCCcC
Confidence 7889999999999999 788754
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-12 Score=103.45 Aligned_cols=81 Identities=16% Similarity=0.374 Sum_probs=64.7
Q ss_pred EEeccccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChH
Q 015833 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE 100 (399)
Q Consensus 24 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~ 100 (399)
.+.+++.+||+++|+||++||++|+.+.|.+ ..+.+.++.. +.++.|+.|.+
T Consensus 19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~---------------------- 73 (130)
T 2kuc_A 19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKG---------------------- 73 (130)
T ss_dssp HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSST----------------------
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCc----------------------
Confidence 4555566899999999999999999999999 6666666543 66777765531
Q ss_pred HHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 101 TKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 101 ~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
....+++.|+|.++|+++++++ +|+++..
T Consensus 74 ~~~~~~~~~~v~~~Pt~~~~d~---~G~~~~~ 102 (130)
T 2kuc_A 74 EGVELRKKYGVHAYPTLLFINS---SGEVVYR 102 (130)
T ss_dssp THHHHHHHTTCCSSCEEEEECT---TSCEEEE
T ss_pred chHHHHHHcCCCCCCEEEEECC---CCcEEEE
Confidence 1278899999999999999998 9988754
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=97.58 Aligned_cols=71 Identities=20% Similarity=0.421 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|.++++.+++. +.++.|+.|.. ..++++|+
T Consensus 24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~------------------------~~~~~~~~ 76 (115)
T 1thx_A 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN------------------------PTTVKKYK 76 (115)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC------------------------HHHHHHTT
T ss_pred CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCC------------------------HHHHHHcC
Confidence 6899999999999999999999999999998653 88888877644 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+++..
T Consensus 77 v~~~Pt~~~~-~---~G~~~~~ 94 (115)
T 1thx_A 77 VEGVPALRLV-K---GEQILDS 94 (115)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCceeEEEEE-c---CCEEEEE
Confidence 9999999999 6 8988754
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=102.47 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=61.6
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
.-++++++|+||++||++|+.+.|.|.++++++++. ++.++.|++|.. ..++++
T Consensus 23 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~------------------------~~~~~~ 76 (137)
T 2dj0_A 23 RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT--GLNFGKVDVGRY------------------------TDVSTR 76 (137)
T ss_dssp HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS--SCEEEECCTTTC------------------------HHHHHH
T ss_pred cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEeCccC------------------------HHHHHH
Confidence 345679999999999999999999999999999753 388887766533 667888
Q ss_pred cCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|. ++|+++++. +|+++.+
T Consensus 77 ~~v~~~~~~~~~Pt~~~~~----~G~~~~~ 102 (137)
T 2dj0_A 77 YKVSTSPLTKQLPTLILFQ----GGKEAMR 102 (137)
T ss_dssp TTCCCCSSSSCSSEEEEES----SSSEEEE
T ss_pred ccCcccCCcCCCCEEEEEE----CCEEEEE
Confidence 9998 999999994 8888754
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-13 Score=113.99 Aligned_cols=92 Identities=13% Similarity=0.220 Sum_probs=68.0
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCC
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMP 90 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~ 90 (399)
.++++.+.+.+ +.+++...+||+++|+|||+||++|+.+.|.|.++++.+... +.++.|++|.+.+
T Consensus 26 ~~~~i~w~~~~-~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~---------- 91 (164)
T 1sen_A 26 FGDHIHWRTLE-DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEE---------- 91 (164)
T ss_dssp SCTTSCBCCHH-HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGS----------
T ss_pred ccccccccCHH-HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCch----------
Confidence 45666665555 456666678999999999999999999999999987765432 4566676653311
Q ss_pred CcccccCChHHHHHHHhhcCC--CCcCeEEEEcCCCCCCCeeec
Q 015833 91 WLAVPYSDLETKKALNRKFDI--EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 91 ~~~~~~~d~~~~~~l~~~~~v--~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+...|++ .++|+++++|+ +|+++.+
T Consensus 92 -------------~~~~~~~~~~~~~Pt~~~~d~---~G~~~~~ 119 (164)
T 1sen_A 92 -------------PKDEDFSPDGGYIPRILFLDP---SGKVHPE 119 (164)
T ss_dssp -------------CSCGGGCTTCSCSSEEEEECT---TSCBCTT
T ss_pred -------------HHHHHhcccCCcCCeEEEECC---CCCEEEE
Confidence 13455666 66999999998 9988754
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=102.92 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|.++++.+++. +.++.|++|.. ..++++|+
T Consensus 23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 75 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATN------------------------PWTAEKYG 75 (140)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcC------------------------HhHHHHCC
Confidence 4899999999999999999999999999999764 88888877644 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ . +|+++..
T Consensus 76 v~~~Pt~~~~-~---~G~~~~~ 93 (140)
T 3hz4_A 76 VQGTPTFKFF-C---HGRPVWE 93 (140)
T ss_dssp CCEESEEEEE-E---TTEEEEE
T ss_pred CCcCCEEEEE-e---CCcEEEE
Confidence 9999999998 4 8877643
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-12 Score=101.30 Aligned_cols=79 Identities=22% Similarity=0.446 Sum_probs=61.3
Q ss_pred CCcEEEEEEecC-------CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 196 VGKTVGLYFSAR-------WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 196 ~gk~vll~F~a~-------wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
.|++++|+||++ ||++|+.+.|.|.++++++++ ++.++.|+++.. ..|.
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~----------~~~~~~vd~~~~-~~~~------------- 78 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE----------GCVFIYCQVGEK-PYWK------------- 78 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT----------TEEEEEEECCCH-HHHH-------------
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC----------CcEEEEEECCCc-hhhh-------------
Confidence 478999999999 999999999999998887643 588888888632 1111
Q ss_pred CCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 269 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+....+++.|+|.++||++++++.++++..
T Consensus 79 --d~~~~~~~~~~i~~~Pt~~~~~~~~~~~g~ 108 (123)
T 1wou_A 79 --DPNNDFRKNLKVTAVPTLLKYGTPQKLVES 108 (123)
T ss_dssp --CTTCHHHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred --chhHHHHHHCCCCeeCEEEEEcCCceEecc
Confidence 123678889999999999999775555443
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=104.53 Aligned_cols=82 Identities=16% Similarity=0.326 Sum_probs=67.2
Q ss_pred CCCCEEeccc-----c--CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCc
Q 015833 20 EIGEEVKVSD-----L--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWL 92 (399)
Q Consensus 20 ~~G~~v~l~~-----~--~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~ 92 (399)
.+|+.+.+.+ . .+++++|+||++||++|+.+.|.|++++++++++ +.++.|+.|..
T Consensus 45 ~~~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~-------------- 107 (155)
T 2ppt_A 45 ITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAH-------------- 107 (155)
T ss_dssp CCSSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTS--------------
T ss_pred cCCCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCcc--------------
Confidence 3555555432 2 6899999999999999999999999999999753 88888877643
Q ss_pred ccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 93 AVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 93 ~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..++++|+|.++|+++++ . +|+++.+
T Consensus 108 ----------~~l~~~~~i~~~Pt~~~~-~---~G~~~~~ 133 (155)
T 2ppt_A 108 ----------PAVAGRHRIQGIPAFILF-H---KGRELAR 133 (155)
T ss_dssp ----------THHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred ----------HHHHHHcCCCcCCEEEEE-e---CCeEEEE
Confidence 578899999999999999 5 8887754
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=95.87 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=61.7
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
+.++++++|+||++||++|+.+.|.+.++++.+++ ++.++.|+.|.. ..++++
T Consensus 17 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~------------------------~~~~~~ 69 (106)
T 1xwb_A 17 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD---NVVVLKVDVDEC------------------------EDIAME 69 (106)
T ss_dssp HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTC------------------------HHHHHH
T ss_pred hcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC---CeEEEEEeccch------------------------HHHHHH
Confidence 34789999999999999999999999999998863 388988877643 678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|++.++|+++++ + +|+++..
T Consensus 70 ~~v~~~Pt~~~~-~---~G~~~~~ 89 (106)
T 1xwb_A 70 YNISSMPTFVFL-K---NGVKVEE 89 (106)
T ss_dssp TTCCSSSEEEEE-E---TTEEEEE
T ss_pred cCCCcccEEEEE-c---CCcEEEE
Confidence 999999998887 4 8877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=115.04 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+|+|+||++||++|+.+.|.|.++++++++. +.++.|++|.. ..+++.|+
T Consensus 25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 77 (287)
T 3qou_A 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAE------------------------QMIAAQFG 77 (287)
T ss_dssp TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTC------------------------HHHHHTTT
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccC------------------------HHHHHHcC
Confidence 5899999999999999999999999999999753 88888877644 68899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++.+
T Consensus 78 v~~~Pt~~~~~----~G~~~~~ 95 (287)
T 3qou_A 78 LRAIPTVYLFQ----NGQPVDG 95 (287)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCCCCeEEEEE----CCEEEEE
Confidence 99999999994 8887753
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=96.69 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=61.1
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
+.++|+++|+||++||++|+.+.|.+.++++++++ +.++.|+.|.. ..+++.
T Consensus 17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~~------------------------~~~~~~ 68 (105)
T 3m9j_A 17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC------------------------QDVASE 68 (105)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTTC------------------------HHHHHH
T ss_pred hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhhh------------------------HHHHHH
Confidence 34789999999999999999999999999998743 77888876543 678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|++.++|+++++. +|+.+.+
T Consensus 69 ~~v~~~Pt~~~~~----~g~~~~~ 88 (105)
T 3m9j_A 69 SEVKSMPTFQFFK----KGQKVGE 88 (105)
T ss_dssp TTCCBSSEEEEEE----TTEEEEE
T ss_pred cCCCcCcEEEEEE----CCeEEEE
Confidence 9999999999994 7877654
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=97.16 Aligned_cols=74 Identities=14% Similarity=0.310 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.+.....++.++.|+.|.. ..++++|+
T Consensus 20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~l~~~~~ 75 (111)
T 3uvt_A 20 AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE------------------------RNICSKYS 75 (111)
T ss_dssp HSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecccc------------------------HhHHHhcC
Confidence 378999999999999999999999999988765433588888876543 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++..
T Consensus 76 v~~~Pt~~~~~----~g~~~~~ 93 (111)
T 3uvt_A 76 VRGYPTLLLFR----GGKKVSE 93 (111)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCcccEEEEEe----CCcEEEe
Confidence 99999999995 7876643
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=99.82 Aligned_cols=72 Identities=19% Similarity=0.415 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhc-CCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRN-NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
.+++++|+||++||++|+.+.|.|.++++++++ ...++.++.|+.|.. ..++++|
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~l~~~~ 79 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN------------------------QVLASRY 79 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC------------------------CHHHHHH
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC------------------------HHHHHhC
Confidence 478999999999999999999999999999973 111388888877643 5788899
Q ss_pred CCCCcCeEEEEcCCCCCCCee
Q 015833 110 DIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~ 130 (399)
+|.++|++++++ +|+.+
T Consensus 80 ~v~~~Pt~~~~~----~g~~~ 96 (133)
T 1x5d_A 80 GIRGFPTIKIFQ----KGESP 96 (133)
T ss_dssp TCCSSSEEEEEE----TTEEE
T ss_pred CCCeeCeEEEEe----CCCce
Confidence 999999999998 46544
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=99.22 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|.++++.++++ +.++.|++|.. ..++++|+
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 72 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAY------------------------PQTCQKAG 72 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999998753 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCC
Q 015833 111 IEGIPCLVVLQPYDDKDD 128 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~ 128 (399)
|.++|++++++. +|.
T Consensus 73 v~~~Pt~~~~~~---~~~ 87 (122)
T 3aps_A 73 IKAYPSVKLYQY---ERA 87 (122)
T ss_dssp CCSSSEEEEEEE---EGG
T ss_pred CCccceEEEEeC---CCc
Confidence 999999999986 554
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=96.16 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|+.|.. ..++++|+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 69 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA------------------------PGIATQYN 69 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcch------------------------HHHHHhCC
Confidence 4789999999999999999999999999988653 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 70 v~~~Pt~~~~-~---~g~~~~~ 87 (105)
T 1fb6_A 70 IRSIPTVLFF-K---NGERKES 87 (105)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCeEEEE
Confidence 9999998888 4 8887654
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-12 Score=113.67 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=68.8
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcc
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLA 93 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~ 93 (399)
+..+.+.+++.+.....++++++|+||++||++|+.+.|.|.++++++++. +.++.|++|..
T Consensus 96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~--------------- 157 (210)
T 3apq_A 96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDD--------------- 157 (210)
T ss_dssp CTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC---------------
T ss_pred CCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCcc---------------
Confidence 333444444444333357899999999999999999999999999998643 88888877643
Q ss_pred cccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 94 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 94 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..+++.|+|.++|+++++ + +|+++..
T Consensus 158 ---------~~l~~~~~v~~~Pt~~~~-~---~G~~~~~ 183 (210)
T 3apq_A 158 ---------RMLCRMKGVNSYPSLFIF-R---SGMAAVK 183 (210)
T ss_dssp ---------HHHHHHTTCCSSSEEEEE-C---TTSCCEE
T ss_pred ---------HHHHHHcCCCcCCeEEEE-E---CCCceeE
Confidence 678899999999999999 5 8887543
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=97.04 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+|+++|+||++||++|+.+.|.|.++++.+++ ++.++.|+.|.. ..+++.|+|
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 76 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAV------------------------AAVAEAAGI 76 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTT------------------------HHHHHHHTC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CeEEEEEECCch------------------------HHHHHHcCC
Confidence 89999999999999999999999999999864 388888877543 778899999
Q ss_pred CCcCeEEEEcCCCCCCCeeec
Q 015833 112 EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++|+++++ + +|+++..
T Consensus 77 ~~~Pt~~~~-~---~G~~~~~ 93 (112)
T 1ep7_A 77 TAMPTFHVY-K---DGVKADD 93 (112)
T ss_dssp CBSSEEEEE-E---TTEEEEE
T ss_pred CcccEEEEE-E---CCeEEEE
Confidence 999998877 5 8887654
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=97.62 Aligned_cols=70 Identities=16% Similarity=0.334 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+||+++|+||++||++|+.+.|.|.++++++++ +.++.|+.|.. .+++++|+
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~~------------------------~~l~~~~~ 80 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDES------------------------PDIAKECE 80 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC------------------------HHHHHHCC
Confidence 589999999999999999999999999988743 77888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+++.+
T Consensus 81 v~~~Pt~~~~-~---~G~~~~~ 98 (114)
T 2oe3_A 81 VTAMPTFVLG-K---DGQLIGK 98 (114)
T ss_dssp CCSBSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCeEEEE
Confidence 9999999887 5 8887654
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.2e-12 Score=104.39 Aligned_cols=71 Identities=18% Similarity=0.389 Sum_probs=61.5
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
.+||+++|+||++||++|+.+.|.|++++++++ ++.++.|++|.. .++++.|
T Consensus 44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~v~~~~~------------------------~~~~~~~ 95 (139)
T 3d22_A 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP----SLMFLVIDVDEL------------------------SDFSASW 95 (139)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEeCccc------------------------HHHHHHc
Confidence 469999999999999999999999999998873 388888877643 6788999
Q ss_pred CCCCcCeEEEEcCCCCCCCeeec
Q 015833 110 DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++|+++++ + +|+++..
T Consensus 96 ~v~~~Pt~~~~-~---~G~~~~~ 114 (139)
T 3d22_A 96 EIKATPTFFFL-R---DGQQVDK 114 (139)
T ss_dssp TCCEESEEEEE-E---TTEEEEE
T ss_pred CCCcccEEEEE-c---CCeEEEE
Confidence 99999999988 6 8988754
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9e-11 Score=113.41 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=54.1
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
+.++|+|+++||++|+.+.|.|.+++++|+++ +.++.|.+|... ...++
T Consensus 136 ~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~----------i~f~~vd~~~~~---------------------~~~~~ 184 (361)
T 3uem_A 136 KTHILLFLPKSVSDYDGKLSNFKTAAESFKGK----------ILFIFIDSDHTD---------------------NQRIL 184 (361)
T ss_dssp CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT----------CEEEEECTTSGG---------------------GHHHH
T ss_pred CcEEEEEEeCCchhHHHHHHHHHHHHHHccCc----------eEEEEecCChHH---------------------HHHHH
Confidence 57899999999999999999999999999754 556666555212 37889
Q ss_pred HhCCCCc--cceEEEECCCC
Q 015833 278 KYFDVQG--IPCLVIIGPEG 295 (399)
Q Consensus 278 ~~~~v~~--~P~~~lid~~G 295 (399)
+.|||.+ +|++++++.++
T Consensus 185 ~~fgi~~~~~P~~~~~~~~~ 204 (361)
T 3uem_A 185 EFFGLKKEECPAVRLITLEE 204 (361)
T ss_dssp HHTTCCTTTCSEEEEEECC-
T ss_pred HHcCCCccCCccEEEEEcCC
Confidence 9999988 99999997644
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=98.89 Aligned_cols=87 Identities=16% Similarity=0.297 Sum_probs=66.5
Q ss_pred ecCCCCEEecc-cc--CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCccc
Q 015833 18 TKEIGEEVKVS-DL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAV 94 (399)
Q Consensus 18 ~d~~G~~v~l~-~~--~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~ 94 (399)
.+.+|...++. .+ .+|+++|+||++||++|+.+.|.|.++++++ . ++.++.|++|..
T Consensus 6 ~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~--~v~~~~vd~~~~---------------- 65 (118)
T 2f51_A 6 VHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--K--DVTFIKVDVDKN---------------- 65 (118)
T ss_dssp EEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--T--TSEEEEEETTTC----------------
T ss_pred eEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--C--CeEEEEEECCCC----------------
Confidence 44555555555 23 5899999999999999999999999999987 2 388888877644
Q ss_pred ccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 95 PYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 95 ~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..++++|+|.++|++++++....+|+++.+
T Consensus 66 --------~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 66 --------GNAADAYGVSSIPALFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp --------HHHHHHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred --------HHHHHhcCCCCCCEEEEEeCCCCcceEEEe
Confidence 678899999999999999730001666543
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-12 Score=113.85 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=55.7
Q ss_pred cCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 195 LVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 195 ~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
..+.+++++||++ ||++|+.+.|.|+++.+. . +++.++.|++|... .
T Consensus 20 ~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~----------~~v~~~~vd~~~~~---------------------~ 67 (226)
T 1a8l_A 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T----------DKLSYEIVDFDTPE---------------------G 67 (226)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C----------TTEEEEEEETTSHH---------------------H
T ss_pred cCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C----------CceEEEEEeCCCcc---------------------c
Confidence 3456788999999 999999999999998753 2 25888888887421 2
Q ss_pred HHHHHhCCCCccceEEEECCCCc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~ 296 (399)
.++++.|+|.++||++++ ++|+
T Consensus 68 ~~~~~~~~v~~~Pt~~~~-~~g~ 89 (226)
T 1a8l_A 68 KELAKRYRIDRAPATTIT-QDGK 89 (226)
T ss_dssp HHHHHHTTCCSSSEEEEE-ETTB
T ss_pred HHHHHHcCCCcCceEEEE-cCCc
Confidence 789999999999999999 5664
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.8e-11 Score=119.49 Aligned_cols=76 Identities=16% Similarity=0.347 Sum_probs=64.5
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+|||+||++|+.+.|.++++++++++. ..++.++.|++|.+. ..++
T Consensus 30 ~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~-------~~~v~~~~VD~d~d~---------------------~~~l 81 (519)
T 3t58_A 30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKDW-------RPALNLAVLDCAEET---------------------NSAV 81 (519)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGG-------TTTEEEEEEETTSGG---------------------GHHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCc-------CCcEEEEEEECCccc---------------------cHHH
Confidence 589999999999999999999999999999863 236889999887533 4889
Q ss_pred HHhCCCCccceEEEECC---CCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGP---EGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~---~G~i~~~ 300 (399)
++.|+|.++||++++++ +|+.+..
T Consensus 82 ~~~~~V~~~PTl~~f~~g~~~G~~~~~ 108 (519)
T 3t58_A 82 CREFNIAGFPTVRFFQAFTKNGSGATL 108 (519)
T ss_dssp HHHTTCCSBSEEEEECTTCCSCCCEEE
T ss_pred HHHcCCcccCEEEEEcCcccCCCceeE
Confidence 99999999999999986 6664443
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=97.82 Aligned_cols=75 Identities=20% Similarity=0.458 Sum_probs=59.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+|++++|+||++||++|+.+.|.|.+++++++ ..+..++++... +.+....++++|+
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~-----~~v~~~~~~~~~------------------~~~~~~~~~~~~~ 84 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK-----AHIYFINSEEPS------------------QLNDLQAFRSRYG 84 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC-----CCCEEEETTCGG------------------GHHHHHHHHHHHT
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC-----CeEEEEECCCcC------------------cHHHHHHHHHHcC
Confidence 57899999999999999999999999998874 235566665331 2233368899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++.+
T Consensus 85 i~~~Pt~~~~~----~G~~~~~ 102 (118)
T 1zma_A 85 IPTVPGFVHIT----DGQINVR 102 (118)
T ss_dssp CCSSCEEEEEE----TTEEEEE
T ss_pred CCCCCeEEEEE----CCEEEEE
Confidence 99999999995 7877644
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-12 Score=102.52 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=56.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+...+||+|||+||++|+.+.+.+...++..... ..+.++.|.++.+. ...
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~--------~~~~l~~vdv~~~~---------------------~~~ 67 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEG--------RAAPVQRLQMRDPL---------------------PPG 67 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHH--------HHSCEEEEETTSCC---------------------CTT
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhc--------ccceEEEEECCCCC---------------------chh
Confidence 3468999999999999999987665544332111 13678889888652 146
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++..|+|.++||+++|+ +|+.+.+.
T Consensus 68 la~~~~V~g~PT~i~f~-~G~ev~Ri 92 (116)
T 3dml_A 68 LELARPVTFTPTFVLMA-GDVESGRL 92 (116)
T ss_dssp CBCSSCCCSSSEEEEEE-TTEEEEEE
T ss_pred HHHHCCCCCCCEEEEEE-CCEEEeee
Confidence 77889999999999996 99999883
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=99.31 Aligned_cols=73 Identities=18% Similarity=0.342 Sum_probs=59.7
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
+.+||+++|+||++||++|+.+.|.+.+++++++ ++.++.|+.+.. ...++++
T Consensus 34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~-----------------------~~~~~~~ 86 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQE-----------------------NKTLAKE 86 (124)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST-----------------------THHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC----CCEEEEEecCcc-----------------------hHHHHHH
Confidence 3478999999999999999999999999998875 277888876521 1678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++|+++++ + +|+++.+
T Consensus 87 ~~v~~~Pt~~~~-~---~G~~~~~ 106 (124)
T 1faa_A 87 LGIRVVPTFKIL-K---ENSVVGE 106 (124)
T ss_dssp HCCSSSSEEEEE-E---TTEEEEE
T ss_pred cCCCeeeEEEEE-e---CCcEEEE
Confidence 999999996666 5 8887754
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=98.70 Aligned_cols=72 Identities=21% Similarity=0.429 Sum_probs=60.4
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
++.++|+++|+||++||++|+.+.|.+.++++++ ++.++.|+.|.. .++++
T Consensus 29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-----~~~~~~vd~~~~------------------------~~~~~ 79 (117)
T 2xc2_A 29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-----DAIFVKVDVDKL------------------------EETAR 79 (117)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-----SSEEEEEETTTS------------------------HHHHH
T ss_pred HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-----CcEEEEEECCcc------------------------HHHHH
Confidence 3457999999999999999999999999988876 278888877533 67889
Q ss_pred hcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|+|.++|+++++ + +|+++.+
T Consensus 80 ~~~v~~~Pt~~~~-~---~G~~~~~ 100 (117)
T 2xc2_A 80 KYNISAMPTFIAI-K---NGEKVGD 100 (117)
T ss_dssp HTTCCSSSEEEEE-E---TTEEEEE
T ss_pred HcCCCccceEEEE-e---CCcEEEE
Confidence 9999999998888 4 8887654
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=94.30 Aligned_cols=71 Identities=17% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|.++++.++++ +.++.|+.|.. ..++++|+
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 69 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDEN------------------------PKTAMRYR 69 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCC------------------------HhHHHhCC
Confidence 5789999999999999999999999999998643 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 70 v~~~Pt~~~~-~---~g~~~~~ 87 (109)
T 2yzu_A 70 VMSIPTVILF-K---DGQPVEV 87 (109)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcCCEEEEE-e---CCcEeee
Confidence 9999999999 5 8887653
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-12 Score=105.55 Aligned_cols=71 Identities=28% Similarity=0.542 Sum_probs=60.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.|.++.++++ ++.++.|++|.. ..
T Consensus 35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~v~~~~v~~~~~-----------------------~~ 80 (130)
T 1wmj_A 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-----------GAVFLKVDVDEL-----------------------KE 80 (130)
T ss_dssp TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-----------TBCCEECCTTTS-----------------------GG
T ss_pred cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----------CCEEEEEeccch-----------------------HH
Confidence 57899999999999999999999999888764 366777776644 56
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 81 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 105 (130)
T 1wmj_A 81 VAEKYNVEAMPTFLFI-KDGAEADKV 105 (130)
T ss_dssp GHHHHTCCSSCCCCBC-TTTTCCBCC
T ss_pred HHHHcCCCccceEEEE-eCCeEEEEE
Confidence 8889999999999888 899988763
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-11 Score=101.26 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCC--CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 31 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 31 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
.+++|||+|||+| |++|+.+.|.|.+++++|.++. +.++.|++ +.+.+++.+
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~--v~~~KVdv------------------------De~~~lA~~ 86 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYT--WQVAIADL------------------------EQSEAIGDR 86 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSC--CEEEECCH------------------------HHHHHHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCe--EEEEEEEC------------------------CCCHHHHHH
Confidence 5678999999999 9999999999999999985431 77887744 444899999
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++||++++. +|+++.+
T Consensus 87 ygV~sIPTlilFk----~G~~v~~ 106 (140)
T 2qgv_A 87 FGAFRFPATLVFT----GGNYRGV 106 (140)
T ss_dssp HTCCSSSEEEEEE----TTEEEEE
T ss_pred cCCccCCEEEEEE----CCEEEEE
Confidence 9999999999997 8988865
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-11 Score=103.13 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=50.7
Q ss_pred cEEEEEEecCC--ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEE--EEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 198 KTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE--VVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 198 k~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
+.++|+||++| |++|+.+.|.|++++++| ++ +. ++.|++|. .
T Consensus 35 ~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~----------v~~~~~~Vd~d~-----------------------~ 80 (142)
T 2es7_A 35 GDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ----------FDWQVAVADLEQ-----------------------S 80 (142)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTC-TT----------SCCEEEEECHHH-----------------------H
T ss_pred CCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc----------cceeEEEEECCC-----------------------C
Confidence 45788899877 999999999999999988 43 56 77776653 2
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.++++.|+|.++||+++| ++|+++.+.
T Consensus 81 ~~la~~~~V~~iPT~~~f-k~G~~v~~~ 107 (142)
T 2es7_A 81 EAIGDRFNVRRFPATLVF-TDGKLRGAL 107 (142)
T ss_dssp HHHHHTTTCCSSSEEEEE-SCC----CE
T ss_pred HHHHHhcCCCcCCeEEEE-eCCEEEEEE
Confidence 789999999999999999 999998774
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-12 Score=106.46 Aligned_cols=81 Identities=25% Similarity=0.463 Sum_probs=65.5
Q ss_pred CCEEeccccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCC
Q 015833 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 98 (399)
Q Consensus 22 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d 98 (399)
.+.+.++..+||+++|+||++||++|+.+.|.+ .++.+.+++. +.++.|++|.+
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-------------------- 65 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTP-------------------- 65 (130)
Confidence 567888888999999999999999999999999 8888776543 77777766422
Q ss_pred hHHHHHHHhhcCCCCcCeEEEEcCCCCCCCe
Q 015833 99 LETKKALNRKFDIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 99 ~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i 129 (399)
....+++.|+|.++|+++++++ .+|++
T Consensus 66 --~~~~~~~~~~v~~~Pt~~~~d~--~~G~~ 92 (130)
T 2lst_A 66 --EGQELARRYRVPGTPTFVFLVP--KAGAW 92 (130)
Confidence 1267889999999999999985 15776
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-11 Score=98.34 Aligned_cols=70 Identities=19% Similarity=0.381 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. .++++.|+
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~------------------------~~l~~~~~ 87 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNN------------------------SEIVSKCR 87 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCC------------------------HHHHHHcC
Confidence 68999999999999999999999999999873 388888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+++..
T Consensus 88 v~~~Pt~~i~-~---~G~~~~~ 105 (125)
T 1r26_A 88 VLQLPTFIIA-R---SGKMLGH 105 (125)
T ss_dssp CCSSSEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCeEEEE
Confidence 9999998888 5 8887653
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-11 Score=98.76 Aligned_cols=82 Identities=13% Similarity=0.211 Sum_probs=62.4
Q ss_pred EecCCCCEEecc-ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCC--CcEEEEEEecCCChHHHHHhHhcCCCcc
Q 015833 17 STKEIGEEVKVS-DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG--SDFEVVFVSSDEDLNAFNNYRACMPWLA 93 (399)
Q Consensus 17 l~d~~G~~v~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~--~~~~ii~Vs~D~~~~~~~~~~~~~~~~~ 93 (399)
+.+++++.+... ..++++++|+||++||++|+.+.|.|.++++++++.+ .++.++.|+.+..
T Consensus 9 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------- 73 (121)
T 2djj_A 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN--------------- 73 (121)
T ss_dssp SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS---------------
T ss_pred eEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc---------------
Confidence 445566655444 2478999999999999999999999999999997621 1488888877643
Q ss_pred cccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCC
Q 015833 94 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD 128 (399)
Q Consensus 94 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~ 128 (399)
+ +++ +|.++|++++++. +|+
T Consensus 74 ----~------~~~--~v~~~Pt~~~~~~---~~~ 93 (121)
T 2djj_A 74 ----D------VPD--EIQGFPTIKLYPA---GAK 93 (121)
T ss_dssp ----C------CSS--CCSSSSEEEEECS---SCT
T ss_pred ----c------ccc--ccCcCCeEEEEeC---cCC
Confidence 1 222 8999999999997 666
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=93.82 Aligned_cols=72 Identities=19% Similarity=0.461 Sum_probs=60.7
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
+.++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. ..+++.
T Consensus 16 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~------------------------~~~~~~ 67 (104)
T 2vim_A 16 ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQN------------------------EEAAAK 67 (104)
T ss_dssp TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHH
T ss_pred hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC----CCEEEEEeccCC------------------------HHHHHH
Confidence 3478999999999999999999999999998874 388888877643 678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|++.++|++++++ +|+++..
T Consensus 68 ~~v~~~Pt~~~~~----~g~~~~~ 87 (104)
T 2vim_A 68 YSVTAMPTFVFIK----DGKEVDR 87 (104)
T ss_dssp TTCCSSSEEEEEE----TTEEEEE
T ss_pred cCCccccEEEEEe----CCcEEEE
Confidence 9999999988885 7877654
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.18 E-value=5.4e-11 Score=95.91 Aligned_cols=71 Identities=23% Similarity=0.436 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|.++++++++. +.++.|++|.. ..++++|+
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 81 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTN------------------------PETARNFQ 81 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------HHHHHhcC
Confidence 5889999999999999999999999999988643 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++..
T Consensus 82 i~~~Pt~~~~~----~g~~~~~ 99 (121)
T 2i1u_A 82 VVSIPTLILFK----DGQPVKR 99 (121)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCcCCEEEEEE----CCEEEEE
Confidence 99999998885 8877643
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-11 Score=95.75 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=59.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.|.++++.+. ++.++.|+.|.. .+++++|+
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~------------------------~~l~~~~~ 69 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP----QVAISSVDSEAR------------------------PELMKELG 69 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT----TSCEEEEEGGGC------------------------HHHHHHTT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC----CcEEEEEcCcCC------------------------HHHHHHcC
Confidence 57899999999999999999999999887763 377777766432 77889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++.+
T Consensus 70 v~~~Pt~~~~-~---~G~~v~~ 87 (110)
T 2l6c_A 70 FERVPTLVFI-R---DGKVAKV 87 (110)
T ss_dssp CCSSCEEEEE-E---SSSEEEE
T ss_pred CcccCEEEEE-E---CCEEEEE
Confidence 9999999999 6 8988754
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-11 Score=101.45 Aligned_cols=70 Identities=17% Similarity=0.436 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..++++|+
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~~~~------------------------~~l~~~~~ 82 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP----QVSFVKLEAEGV------------------------PEVSEKYE 82 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC----CeEEEEEECCCC------------------------HHHHHHcC
Confidence 48999999999999999999999999999862 388888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++.+
T Consensus 83 v~~~Pt~~~~~----~G~~~~~ 100 (153)
T 2wz9_A 83 ISSVPTFLFFK----NSQKIDR 100 (153)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEE----CCEEEEE
Confidence 99999999998 7877654
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-11 Score=98.70 Aligned_cols=72 Identities=19% Similarity=0.361 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.++++++++.+ +.++.|+.|.. ..+++.|+
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--v~~~~vd~d~~------------------------~~~~~~~~ 85 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQ------------------------SQIAQEVG 85 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHH--SEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCc--EEEEEEECcCC------------------------HHHHHHcC
Confidence 68999999999999999999999999999887653 88888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++..
T Consensus 86 v~~~Pt~~~~~----~G~~~~~ 103 (121)
T 2j23_A 86 IRAMPTFVFFK----NGQKIDT 103 (121)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCcccEEEEEE----CCeEEee
Confidence 99999999885 8887654
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-11 Score=111.03 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=53.8
Q ss_pred CcEEEEEE----ecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 197 GKTVGLYF----SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 197 gk~vll~F----~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+.++++.| |++||++|+.++|.+.++++++.+. +.+.++.|++|.+
T Consensus 21 ~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~--------~~v~~~~vd~~~~---------------------- 70 (229)
T 2ywm_A 21 EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQ--------DKIKLDIYSPFTH---------------------- 70 (229)
T ss_dssp SCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCT--------TTEEEEEECTTTC----------------------
T ss_pred CCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCC--------CceEEEEecCccc----------------------
Confidence 34455555 5899999999999999999888431 2578887776654
Q ss_pred hHHHHHhCCCCccceEEEECCCCcE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
.++++.|+|+++||+++++ +|+.
T Consensus 71 -~~l~~~~~v~~~Ptl~~~~-~~~~ 93 (229)
T 2ywm_A 71 -KEETEKYGVDRVPTIVIEG-DKDY 93 (229)
T ss_dssp -HHHHHHTTCCBSSEEEEES-SSCC
T ss_pred -HHHHHHcCCCcCcEEEEEC-CCcc
Confidence 7899999999999999995 4443
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=95.12 Aligned_cols=70 Identities=14% Similarity=0.401 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.+++ +.++.|+.|.. ..+++.|+
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~------------------------~~~~~~~~ 66 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDEN------------------------PDIAARYG 66 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCC------------------------HHHHHhCC
Confidence 589999999999999999999999999988743 78888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 67 v~~~Pt~~~~-~---~g~~~~~ 84 (104)
T 2e0q_A 67 VMSLPTVIFF-K---DGEPVDE 84 (104)
T ss_dssp CCSSCEEEEE-E---TTEEEEE
T ss_pred ccccCEEEEE-E---CCeEhhh
Confidence 9999999999 5 8887653
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-12 Score=100.78 Aligned_cols=72 Identities=19% Similarity=0.431 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.+.++++.+++.+.++.++.|+.+.. ..++++|+
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~~ 78 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE------------------------SDLAQQYG 78 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC------------------------CSSHHHHT
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC------------------------HHHHHHCC
Confidence 689999999999999999999999999999886554577777766532 45678899
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|.++|+++++. +|+.+
T Consensus 79 v~~~Pt~~~~~----~g~~~ 94 (120)
T 1mek_A 79 VRGYPTIKFFR----NGDTA 94 (120)
T ss_dssp CCSSSEEEEEE----SSCSS
T ss_pred CCcccEEEEEe----CCCcC
Confidence 99999999994 67654
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=111.30 Aligned_cols=70 Identities=26% Similarity=0.434 Sum_probs=60.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+|||+||++|+.+.|.|.++++++.+ .+.++.|++|.+. ...
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~----------~~~~~~v~~d~~~---------------------~~~ 82 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG----------VVQVAAVNCDLNK---------------------NKA 82 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTSTT---------------------THH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccC----------CcEEEEEEccCcc---------------------CHH
Confidence 368999999999999999999999999998864 3789999998543 378
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i 297 (399)
+++.|+|.++||+++++ +|++
T Consensus 83 l~~~~~I~~~Pt~~~~~-~g~~ 103 (298)
T 3ed3_A 83 LCAKYDVNGFPTLMVFR-PPKI 103 (298)
T ss_dssp HHHHTTCCBSSEEEEEE-CCCC
T ss_pred HHHhCCCCccceEEEEE-CCce
Confidence 99999999999999995 4553
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-12 Score=100.69 Aligned_cols=72 Identities=25% Similarity=0.519 Sum_probs=60.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+||++||++|+.+.|.+.++.+++.+ ++.++.|++|.+ ..
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~ 64 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG----------KVKVVKVNVDEN-----------------------PN 64 (106)
Confidence 468999999999999999999999999988864 366777766543 57
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|++.++|+++++ ++|+++.+.
T Consensus 65 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 89 (106)
T 2yj7_A 65 TAAQYGIRSIPTLLLF-KNGQVVDRL 89 (106)
Confidence 8899999999999999 899987663
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-11 Score=97.64 Aligned_cols=84 Identities=19% Similarity=0.356 Sum_probs=60.0
Q ss_pred ecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccC
Q 015833 18 TKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS 97 (399)
Q Consensus 18 ~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~ 97 (399)
.+.+++.+...-.+++.++|+||++||++|+.+.|.|.+++++++++ +.++.|+.|..
T Consensus 36 ~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------- 93 (140)
T 1v98_A 36 VEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEH------------------- 93 (140)
T ss_dssp -------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-------------------
T ss_pred ccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCC-------------------
Confidence 34444444433334444999999999999999999999999998643 88998877643
Q ss_pred ChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 98 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 98 d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..+++.|+|.++|+++++ . +|+++..
T Consensus 94 -----~~l~~~~~v~~~Pt~~~~-~---~G~~~~~ 119 (140)
T 1v98_A 94 -----PGLAARYGVRSVPTLVLF-R---RGAPVAT 119 (140)
T ss_dssp -----HHHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred -----HHHHHHCCCCccCEEEEE-e---CCcEEEE
Confidence 678899999999999999 5 8887653
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.9e-11 Score=93.89 Aligned_cols=70 Identities=17% Similarity=0.340 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+||+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. ..++++|+
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~------------------------~~~~~~~~ 76 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT----KMVFIKVDVDEV------------------------SEVTEKEN 76 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTT------------------------HHHHHHTT
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCEEEEEECCCC------------------------HHHHHHcC
Confidence 68999999999999999999999999998864 288888877543 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++..
T Consensus 77 v~~~Pt~~~~~----~G~~~~~ 94 (112)
T 1syr_A 77 ITSMPTFKVYK----NGSSVDT 94 (112)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCcccEEEEEE----CCcEEEE
Confidence 99999988774 8877654
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-11 Score=100.32 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=60.9
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
+++ +++|+|||+||++|+.+.|.|.+++++++ +.++.|+++...+. .+.+....++++|
T Consensus 30 ~~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~---------------~~~d~~~~l~~~~ 88 (135)
T 3emx_A 30 LQG-DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE---------------RELSAARLEMNKA 88 (135)
T ss_dssp HTS-SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH---------------HHHHHHHHHHHHH
T ss_pred hCC-cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh---------------hhhhhhHHHHHHc
Confidence 355 99999999999999999999999988763 67788877543221 0223448899999
Q ss_pred CCCCcCeEEEEcCCCCCCCeeec
Q 015833 110 DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++|++++++ +|+++.+
T Consensus 89 ~v~~~Pt~~~~~----~G~~v~~ 107 (135)
T 3emx_A 89 GVEGTPTLVFYK----EGRIVDK 107 (135)
T ss_dssp TCCSSSEEEEEE----TTEEEEE
T ss_pred CCceeCeEEEEc----CCEEEEE
Confidence 999999888887 7887754
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-11 Score=110.19 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=58.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++|||+|||+||++|+.+.|.|.+++++|. ++.++.|+++. ..
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-----------~v~f~kVd~d~------------------------~~ 176 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP-----------MVKFCKIKASN------------------------TG 176 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-----------TSEEEEEEHHH------------------------HC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----------CCEEEEEeCCc------------------------HH
Confidence 47899999999999999999999999998874 46777776642 23
Q ss_pred HHHhCCCCccceEEEECCCCcEEeccc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++..|+|.++||++++ ++|+++.+..
T Consensus 177 l~~~~~I~~~PTll~~-~~G~~v~~~v 202 (245)
T 1a0r_P 177 AGDRFSSDVLPTLLVY-KGGELLSNFI 202 (245)
T ss_dssp CTTSSCTTTCSEEEEE-ETTEEEEEET
T ss_pred HHHHCCCCCCCEEEEE-ECCEEEEEEe
Confidence 5678999999999999 6999987743
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.7e-11 Score=93.66 Aligned_cols=70 Identities=21% Similarity=0.510 Sum_probs=60.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+|++++|+||++||++|+.+.|.|+++++.+. ++.++.|+.|.. ..++++|+
T Consensus 25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~------------------------~~~~~~~~ 76 (113)
T 1ti3_A 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDEL------------------------KAVAEEWN 76 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTC------------------------HHHHHHHH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC----CcEEEEEEcccc------------------------HHHHHhCC
Confidence 58999999999999999999999999998874 388888877643 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ . +|+++..
T Consensus 77 v~~~Pt~~~~-~---~G~~~~~ 94 (113)
T 1ti3_A 77 VEAMPTFIFL-K---DGKLVDK 94 (113)
T ss_dssp CSSTTEEEEE-E---TTEEEEE
T ss_pred CCcccEEEEE-e---CCEEEEE
Confidence 9999999998 4 8887754
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-11 Score=98.24 Aligned_cols=71 Identities=21% Similarity=0.467 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCc--------------ccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCccccc
Q 015833 31 EGKVTALYFSANWYP--------------PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 96 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~--------------~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~ 96 (399)
+||+++|+||++||+ +|+.+.|.+.+++++++++ +.++.|++|..
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~------------------ 78 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------ 78 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSC------------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------
Confidence 589999999999999 9999999999999988653 88888887644
Q ss_pred CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 97 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 97 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+++++|+|.++|+++++ + +|+++.+
T Consensus 79 ------~~l~~~~~v~~~Pt~~~~-~---~G~~~~~ 104 (123)
T 1oaz_A 79 ------PGTAPKYGIRGIPTLLLF-K---NGEVAAT 104 (123)
T ss_dssp ------TTTGGGGTCCBSSEEEEE-E---SSSEEEE
T ss_pred ------HHHHHHcCCCccCEEEEE-E---CCEEEEE
Confidence 457789999999999999 6 9988754
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-11 Score=107.70 Aligned_cols=71 Identities=21% Similarity=0.477 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.. ..++++|+
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~ 81 (222)
T 3dxb_A 29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG 81 (222)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------TTTGGGGT
T ss_pred cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence 5899999999999999999999999999998754 88888887644 45678899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++..
T Consensus 82 v~~~Pt~~~~~----~G~~~~~ 99 (222)
T 3dxb_A 82 IRGIPTLLLFK----NGEVAAT 99 (222)
T ss_dssp CCSBSEEEEEE----TTEEEEE
T ss_pred CCcCCEEEEEE----CCeEEEE
Confidence 99999999996 7877654
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-11 Score=105.58 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=62.5
Q ss_pred CCEEeccccCCCEEEEEEecCCCcccHhhHHH---HHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCC
Q 015833 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGV---LVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 98 (399)
Q Consensus 22 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~---l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d 98 (399)
.+.+..+..+||+|||+|||+||++|+.+.|. ..++++.+++. +.++.|+.|+..+....+.
T Consensus 29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~------------ 93 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYM------------ 93 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHH------------
T ss_pred HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHH------------
Confidence 34455555689999999999999999999883 34666666543 7778787765533211111
Q ss_pred hHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 99 LETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 99 ~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..+...+++.++|+++++++ +|+++..
T Consensus 94 ----~~~q~~~gv~g~Pt~v~l~~---dG~~v~~ 120 (173)
T 3ira_A 94 ----TVCQIILGRGGWPLNIIMTP---GKKPFFA 120 (173)
T ss_dssp ----HHHHHHHSCCCSSEEEEECT---TSCEEEE
T ss_pred ----HHHHHHcCCCCCcceeeECC---CCCceee
Confidence 11122359999999999999 9999865
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.8e-11 Score=93.81 Aligned_cols=70 Identities=20% Similarity=0.444 Sum_probs=59.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. ..+++.|+
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~------------------------~~~~~~~~ 78 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP----GAIFLKVDVDEL------------------------KDVAEAYN 78 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CcEEEEEEcccC------------------------HHHHHHcC
Confidence 48999999999999999999999999999875 378888877533 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 79 v~~~Pt~~~~-~---~g~~~~~ 96 (118)
T 2vm1_A 79 VEAMPTFLFI-K---DGEKVDS 96 (118)
T ss_dssp CCSBSEEEEE-E---TTEEEEE
T ss_pred CCcCcEEEEE-e---CCeEEEE
Confidence 9999999888 5 8887654
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=110.67 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=61.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+|||+||++|+.+.|.+.++++++++.. ....++.++.|+++.+ ..
T Consensus 21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~----~~~~~v~~~~Vd~~~~-----------------------~~ 73 (382)
T 2r2j_A 21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEF----PNENQVVFARVDCDQH-----------------------SD 73 (382)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC-------CCEEEEEEETTTC-----------------------HH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhc----CCCCceEEEEEECCcc-----------------------HH
Confidence 47899999999999999999999999999985320 0012477877777754 78
Q ss_pred HHHhCCCCccceEEEECCCCcEEe
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~ 299 (399)
+++.|+|.++||++++ ++|+++.
T Consensus 74 l~~~~~v~~~Pt~~~f-~~G~~~~ 96 (382)
T 2r2j_A 74 IAQRYRISKYPTLKLF-RNGMMMK 96 (382)
T ss_dssp HHHHTTCCEESEEEEE-ETTEEEE
T ss_pred HHHhcCCCcCCEEEEE-eCCcEee
Confidence 9999999999999999 7888775
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=91.59 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+|+|+|||+|+...|.++++.+. . ++.++.|.+|...+ ...++
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~----------~v~~~~vdVde~r~-------------------~Sn~I 72 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R----------DMDGYYLIVQQERD-------------------LSDYI 72 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H----------TCCEEEEEGGGGHH-------------------HHHHH
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C----------CceEEEEEeecCch-------------------hhHHH
Confidence 68999999999999999999999999874 2 47889998885531 12568
Q ss_pred HHhCCCC-ccceEEEECCCCcEEeccc
Q 015833 277 TKYFDVQ-GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 277 ~~~~~v~-~~P~~~lid~~G~i~~~~~ 302 (399)
+..|||+ ..|+++++ ++|+++.+..
T Consensus 73 A~~~~V~h~sPq~il~-k~G~~v~~~S 98 (112)
T 3iv4_A 73 AKKTNVKHESPQAFYF-VNGEMVWNRD 98 (112)
T ss_dssp HHHHTCCCCSSEEEEE-ETTEEEEEEE
T ss_pred HHHhCCccCCCeEEEE-ECCEEEEEee
Confidence 9999999 59999999 9999998753
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=98.59 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=57.5
Q ss_pred CCcEEEEEEec-------CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 196 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 196 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
++.+|||+||| +||++|+.+.|.|++++++|.... ...++.++.|.+|.+
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~-----~~~~v~f~kvD~d~~------------------ 92 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQA-----PQSLNLFFTVDVNEV------------------ 92 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHC-----TTCCEEEEEEETTTC------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhcc-----CCCCEEEEEEECccC------------------
Confidence 35689999999 499999999999999999997320 002477777777755
Q ss_pred CCchhHHHHHhCCCCccceEEEECCCC
Q 015833 269 GDPTIKELTKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~~~P~~~lid~~G 295 (399)
+++++.|+|+++||++++ ++|
T Consensus 93 -----~~la~~~~I~siPtl~~F-~~g 113 (178)
T 3ga4_A 93 -----PQLVKDLKLQNVPHLVVY-PPA 113 (178)
T ss_dssp -----HHHHHHTTCCSSCEEEEE-CCC
T ss_pred -----HHHHHHcCCCCCCEEEEE-cCC
Confidence 789999999999999999 555
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.7e-11 Score=98.89 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=63.7
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHH--HHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYE--ELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~--~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
.+||+|+|+|||+||++|+.+.|.+.+..+ .+.+. .++.|++|.+. ..+..
T Consensus 42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~----~fv~V~vD~e~-----------------------~~~~~ 94 (151)
T 3ph9_A 42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN----KFIMLNLMHET-----------------------TDKNL 94 (151)
T ss_dssp HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH----TCEEEEESSCC-----------------------SCGGG
T ss_pred HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc----CeEEEEecCCc-----------------------hhhHh
Confidence 368999999999999999999999886432 22221 24455554220 11245
Q ss_pred hcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHH
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEE 160 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~ 160 (399)
.|++.++|+++++++ +|+++.+.. ...+...|.+.......+.+..
T Consensus 95 ~~~v~~~PT~~f~~~---~G~~v~~~~----G~~~~~~~~~~~~~~~~ll~~~ 140 (151)
T 3ph9_A 95 SPDGQYVPRIMFVDP---SLTVRADIA----GRYSNRLYTYEPRDLPLLIENM 140 (151)
T ss_dssp CTTCCCSSEEEEECT---TSCBCTTCC----CSCTTSTTCCCGGGHHHHHHHH
T ss_pred hcCCCCCCEEEEECC---CCCEEEEEe----CCcCCcccccchhhHHHHHHHH
Confidence 789999999999999 998886522 1223344666665555544433
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-11 Score=107.93 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=59.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+|++|+|+||++||++|+.+.|.|.+++++|. ++.++.|.++ + ..
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-----------~v~f~~vd~~-~-----------------------~~ 163 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----------MVKFCKIRAS-N-----------------------TG 163 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----------TSEEEEEEHH-H-----------------------HT
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-----------CeEEEEEECC-c-----------------------HH
Confidence 45899999999999999999999999988774 4678888766 2 45
Q ss_pred HHHhCCCCccceEEEECCCCcEEeccc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++..|+|.++||++++ ++|+++.+..
T Consensus 164 l~~~~~i~~~PTl~~~-~~G~~v~~~~ 189 (217)
T 2trc_P 164 AGDRFSSDVLPTLLVY-KGGELISNFI 189 (217)
T ss_dssp CSTTSCGGGCSEEEEE-ETTEEEEEET
T ss_pred HHHHCCCCCCCEEEEE-ECCEEEEEEe
Confidence 6778999999999999 6999987643
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-12 Score=99.29 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=53.5
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
.+++++..+|+++|+|||+||++|+.+.|.|.++++++ ..|-+..|...
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~--------------~~v~~~~~~~~----------------- 52 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV--------------PYVECSPNGPG----------------- 52 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGS--------------CEEESCTTCTT-----------------
T ss_pred hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhC--------------CEEEEeccccc-----------------
Confidence 45667777889999999999999999999998876432 22323322110
Q ss_pred CCchhHHHHHhCCCCccceEEEECCCCcE
Q 015833 269 GDPTIKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
+...++++.|+|.++||+++ +|+.
T Consensus 53 --~~~~~l~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 53 --TPQAQECTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp --SCCCHHHHHTTCCSSSEEEE---TTEE
T ss_pred --chhHHHHHHcCCeEeCEEEE---CCEE
Confidence 11378999999999999776 7764
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.1e-11 Score=95.41 Aligned_cols=79 Identities=15% Similarity=0.406 Sum_probs=60.8
Q ss_pred ccCCCEEEEEEecC-------CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHH
Q 015833 29 DLEGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 101 (399)
Q Consensus 29 ~~~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 101 (399)
+.+||+++|+|||+ ||++|+.+.|.|.++++++++ ++.++.|+++.... + . + .
T Consensus 21 ~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~---~~~~~~vd~~~~~~-~----~----------d--~ 80 (123)
T 1wou_A 21 QHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKPY-W----K----------D--P 80 (123)
T ss_dssp TTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHHH-H----H----------C--T
T ss_pred HhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC---CcEEEEEECCCchh-h----h----------c--h
Confidence 33589999999999 999999999999999888754 38899898864211 0 0 1 1
Q ss_pred HHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 102 KKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 102 ~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
...+++.|+|.++|++++++. .+++.
T Consensus 81 ~~~~~~~~~i~~~Pt~~~~~~---~~~~~ 106 (123)
T 1wou_A 81 NNDFRKNLKVTAVPTLLKYGT---PQKLV 106 (123)
T ss_dssp TCHHHHHHCCCSSSEEEETTS---SCEEE
T ss_pred hHHHHHHCCCCeeCEEEEEcC---CceEe
Confidence 156778899999999999985 44444
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-10 Score=83.36 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=51.5
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
+.|.||++||++|+.+.|.++++.+++.. ++.++.|+ + .++++.
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~----------~~~~~~v~---~-----------------------~~~~~~ 45 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGI----------DAEFEKIK---E-----------------------MDQILE 45 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTC----------CEEEEEEC---S-----------------------HHHHHH
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCC----------ceEEEEec---C-----------------------HHHHHH
Confidence 46899999999999999999999887753 36666654 2 578889
Q ss_pred CCCCccceEEEECCCCcEEec
Q 015833 280 FDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~~ 300 (399)
|+|.++|++++ +|+++.+
T Consensus 46 ~~v~~~Pt~~~---~G~~~~~ 63 (77)
T 1ilo_A 46 AGLTALPGLAV---DGELKIM 63 (77)
T ss_dssp HTCSSSSCEEE---TTEEEEC
T ss_pred CCCCcCCEEEE---CCEEEEc
Confidence 99999999988 8998876
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=95.60 Aligned_cols=67 Identities=9% Similarity=0.079 Sum_probs=55.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+||+++|+|||+||++|+.+.|.|.++++++. ++.++.|++|.. .+.|+
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~~~~---------------------------~~~~~ 77 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP----ETKFVKAIVNSC---------------------------IEHYH 77 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS----SEEEEEECCSSS---------------------------CSSCC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CcEEEEEEhhcC---------------------------cccCC
Confidence 35899999999999999999999999998873 388888866532 15799
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++.+
T Consensus 78 i~~~Pt~~~~~----~G~~v~~ 95 (135)
T 2dbc_A 78 DNCLPTIFVYK----NGQIEGK 95 (135)
T ss_dssp SSCCSEEEEES----SSSCSEE
T ss_pred CCCCCEEEEEE----CCEEEEE
Confidence 99999999996 7887754
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.7e-10 Score=96.33 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=57.6
Q ss_pred CCCEEEEEEec-------CCCcccHhhHHHHHHHHHHHhcC--CCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHH
Q 015833 31 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNN--GSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 101 (399)
Q Consensus 31 ~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~--~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 101 (399)
++.+|+|+||| +||++|+.+.|.|+++++++... +.++.+..|++|..
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~----------------------- 92 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV----------------------- 92 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC-----------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC-----------------------
Confidence 35689999999 49999999999999999999721 02488888877644
Q ss_pred HHHHHhhcCCCCcCeEEEEcC
Q 015833 102 KKALNRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 102 ~~~l~~~~~v~~~P~~~lid~ 122 (399)
++++.+|+|+++|+++++.+
T Consensus 93 -~~la~~~~I~siPtl~~F~~ 112 (178)
T 3ga4_A 93 -PQLVKDLKLQNVPHLVVYPP 112 (178)
T ss_dssp -HHHHHHTTCCSSCEEEEECC
T ss_pred -HHHHHHcCCCCCCEEEEEcC
Confidence 88999999999999999985
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-11 Score=95.84 Aligned_cols=71 Identities=23% Similarity=0.428 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.+++++++++++ +.++.|+.|.. ..++++|+
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~ 70 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDEN------------------------PNTAAQYG 70 (106)
Confidence 5789999999999999999999999999988643 77777755422 66788999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++ + +|+++..
T Consensus 71 v~~~Pt~~~~-~---~g~~~~~ 88 (106)
T 2yj7_A 71 IRSIPTLLLF-K---NGQVVDR 88 (106)
Confidence 9999999999 5 8877643
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-10 Score=88.72 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=60.5
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+|+|+|||+|+...|.++++++. + ++.++.|.+|+.++ .+.+++.+|+|
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~---~v~~~~vdVde~r~--------------------~Sn~IA~~~~V 78 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R---DMDGYYLIVQQERD--------------------LSDYIAKKTNV 78 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H---TCCEEEEEGGGGHH--------------------HHHHHHHHHTC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C---CceEEEEEeecCch--------------------hhHHHHHHhCC
Confidence 78999999999999999999999999874 2 37788887764422 23679999999
Q ss_pred CC-cCeEEEEcCCCCCCCeeecc
Q 015833 112 EG-IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 112 ~~-~P~~~lid~~~~~G~i~~~~ 133 (399)
++ .|+++++. +|+++.+.
T Consensus 79 ~h~sPq~il~k----~G~~v~~~ 97 (112)
T 3iv4_A 79 KHESPQAFYFV----NGEMVWNR 97 (112)
T ss_dssp CCCSSEEEEEE----TTEEEEEE
T ss_pred ccCCCeEEEEE----CCEEEEEe
Confidence 95 99999997 89888663
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=93.53 Aligned_cols=67 Identities=9% Similarity=0.070 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++|+|+|||+||++|+.+.|.|.++++++. ++.++.|++|. ...+|+|
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~----~v~f~kvd~d~---------------------------~~~~~~v 71 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP----ETKFVKAIVNS---------------------------CIQHYHD 71 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT----TSEEEEEEGGG---------------------------TSTTCCG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CCEEEEEEhHH---------------------------hHHHCCC
Confidence 4599999999999999999999999999874 27788886642 1367999
Q ss_pred CCcCeEEEEcCCCCCCCeeecc
Q 015833 112 EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++|+++++. +|+.+.+.
T Consensus 72 ~~~PT~~~fk----~G~~v~~~ 89 (118)
T 3evi_A 72 NCLPTIFVYK----NGQIEAKF 89 (118)
T ss_dssp GGCSEEEEEE----TTEEEEEE
T ss_pred CCCCEEEEEE----CCEEEEEE
Confidence 9999999997 88887653
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-10 Score=108.44 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=59.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHH-------HHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPK-------LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~-------l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
.+++++|+|||+||+ |+.++|. ++++++.+++. ++.++.|+++.+
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~---------~v~~~~Vd~~~~------------------ 78 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK---------DIGFVMVDAKKE------------------ 78 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS---------SEEEEEEETTTT------------------
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc---------CcEEEEEeCCCC------------------
Confidence 368999999999999 9999998 77777777643 588888887755
Q ss_pred CCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 269 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+++.|+|+++||++++ ++|++...
T Consensus 79 -----~~l~~~~~v~~~Pt~~~~-~~g~~~~~ 104 (350)
T 1sji_A 79 -----AKLAKKLGFDEEGSLYVL-KGDRTIEF 104 (350)
T ss_dssp -----HHHHHHHTCCSTTEEEEE-ETTEEEEE
T ss_pred -----HHHHHhcCCCccceEEEE-ECCcEEEe
Confidence 679999999999999999 88886544
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.7e-10 Score=111.40 Aligned_cols=69 Identities=17% Similarity=0.415 Sum_probs=60.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|.|||+||++|+.+.|.+.++++++++. ++.++.|+++.+ ..
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~---------~v~~~~vd~~~~-----------------------~~ 77 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK---------NITLAQIDCTEN-----------------------QD 77 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---------TCEEEEEETTTC-----------------------HH
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC---------CeEEEEEECCCC-----------------------HH
Confidence 4789999999999999999999999999988753 588888887755 67
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i 297 (399)
+++.|+|.++||++++ ++|+.
T Consensus 78 l~~~~~v~~~Pt~~~~-~~g~~ 98 (504)
T 2b5e_A 78 LCMEHNIPGFPSLKIF-KNSDV 98 (504)
T ss_dssp HHHHTTCCSSSEEEEE-ETTCT
T ss_pred HHHhcCCCcCCEEEEE-eCCcc
Confidence 9999999999999999 56763
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.5e-10 Score=111.15 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=60.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+|||+||++|+.+.|.|.++++++++. +.++.|+++.. ..+
T Consensus 21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~----------v~~~~vd~~~~-----------------------~~l 67 (481)
T 3f8u_A 21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI----------VPLAKVDCTAN-----------------------TNT 67 (481)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CCEEEEETTTC-----------------------HHH
T ss_pred CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc----------eEEEEEECCCC-----------------------HHH
Confidence 489999999999999999999999999988643 67777877755 789
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|.++||++++ ++|+.+.+
T Consensus 68 ~~~~~v~~~Ptl~~~-~~g~~~~~ 90 (481)
T 3f8u_A 68 CNKYGVSGYPTLKIF-RDGEEAGA 90 (481)
T ss_dssp HHHTTCCEESEEEEE-ETTEEEEE
T ss_pred HHhcCCCCCCEEEEE-eCCceeee
Confidence 999999999999999 78876554
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-10 Score=112.28 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=58.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCC-----cEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS-----DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~-----~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
.+|++||+|||+||++|+.+.|.+.++++++++... ++.++.|++|.. .++
T Consensus 41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~------------------------~~l 96 (470)
T 3qcp_A 41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE------------------------VDL 96 (470)
T ss_dssp GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC------------------------HHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC------------------------HHH
Confidence 348999999999999999999999999999874421 488888877643 788
Q ss_pred HhhcCCCCcCeEEEEcC
Q 015833 106 NRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~ 122 (399)
+++|+|.++|+++++++
T Consensus 97 a~~y~V~~~PTlilf~~ 113 (470)
T 3qcp_A 97 CRKYDINFVPRLFFFYP 113 (470)
T ss_dssp HHHTTCCSSCEEEEEEE
T ss_pred HHHcCCCccCeEEEEEC
Confidence 99999999999999975
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-10 Score=85.12 Aligned_cols=60 Identities=23% Similarity=0.436 Sum_probs=51.7
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 112 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 112 (399)
.++++.||++||++|+.+.|.|.++++++++ ++.++.|+.|.+ .+++++|++.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v~ 55 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD---AVEVEYINVMEN------------------------PQKAMEYGIM 55 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS---SEEEEEEESSSS------------------------CCTTTSTTTC
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC---ceEEEEEECCCC------------------------HHHHHHCCCc
Confidence 5789999999999999999999999998763 389999988644 3466889999
Q ss_pred CcCeEEE
Q 015833 113 GIPCLVV 119 (399)
Q Consensus 113 ~~P~~~l 119 (399)
++|++++
T Consensus 56 ~~Pt~~~ 62 (85)
T 1fo5_A 56 AVPTIVI 62 (85)
T ss_dssp CSSEEEE
T ss_pred ccCEEEE
Confidence 9999998
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=112.81 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=59.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|+|+|+|||+||++|+.+.|.+.++++++.+.. +++....+.++.|++|.. .+
T Consensus 41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~--g~~~~~~v~f~~VD~d~~-----------------------~~ 95 (470)
T 3qcp_A 41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEH--GKDALQIATAAAVNCASE-----------------------VD 95 (470)
T ss_dssp GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSS--CSSGGGGCEEEEEETTTC-----------------------HH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhc--ccccCceEEEEEEECCCC-----------------------HH
Confidence 34799999999999999999999999999886320 000001378888888755 68
Q ss_pred HHHhCCCCccceEEEECCCCc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~ 296 (399)
+++.|+|.++||+++++++|.
T Consensus 96 la~~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 96 LCRKYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp HHHHTTCCSSCEEEEEEESSC
T ss_pred HHHHcCCCccCeEEEEECCCc
Confidence 999999999999999966553
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-12 Score=98.77 Aligned_cols=69 Identities=12% Similarity=0.298 Sum_probs=51.4
Q ss_pred EEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHH
Q 015833 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 103 (399)
Q Consensus 24 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 103 (399)
.++|++..+|+++|+|||+||++|+.+.|.|.+++++++ .|+++.+. ..+...
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---------~v~~~~~~------------------~~~~~~ 56 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNG------------------PGTPQA 56 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCTTC------------------TTSCCC
T ss_pred hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC---------EEEEeccc------------------ccchhH
Confidence 456777788999999999999999999999998876542 33333110 000126
Q ss_pred HHHhhcCCCCcCeEEE
Q 015833 104 ALNRKFDIEGIPCLVV 119 (399)
Q Consensus 104 ~l~~~~~v~~~P~~~l 119 (399)
+++++|+|.++|++++
T Consensus 57 ~l~~~~~V~~~PT~~i 72 (106)
T 3kp8_A 57 QECTEAGITSYPTWII 72 (106)
T ss_dssp HHHHHTTCCSSSEEEE
T ss_pred HHHHHcCCeEeCEEEE
Confidence 7889999999999776
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-10 Score=84.78 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=50.5
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
.+++.||++||++|+.+.|.|.+++++++++ +.++.|++|.+ .+++++|++.+
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v~~ 55 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD------------------------REKAIEYGLMA 55 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC------------------------GGGGGGTCSSC
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------HHHHHhCCcee
Confidence 4689999999999999999999999998643 88888877644 45778899999
Q ss_pred cCeEEE
Q 015833 114 IPCLVV 119 (399)
Q Consensus 114 ~P~~~l 119 (399)
+|++++
T Consensus 56 ~Pt~~~ 61 (85)
T 1nho_A 56 VPAIAI 61 (85)
T ss_dssp SSEEEE
T ss_pred eCEEEE
Confidence 999998
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.96 E-value=5.6e-10 Score=101.74 Aligned_cols=69 Identities=10% Similarity=0.177 Sum_probs=57.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++|||+|||+||++|+.+.|.|.++++++. ++.++.|+++ . ..++..|+
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~----~v~f~kVd~d------------------------~-~~l~~~~~ 182 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP----MVKFCKIKAS------------------------N-TGAGDRFS 182 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT----TSEEEEEEHH------------------------H-HCCTTSSC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CCEEEEEeCC------------------------c-HHHHHHCC
Confidence 48999999999999999999999999999974 2777777543 1 33567899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++..
T Consensus 183 I~~~PTll~~~----~G~~v~~ 200 (245)
T 1a0r_P 183 SDVLPTLLVYK----GGELLSN 200 (245)
T ss_dssp TTTCSEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEE----CCEEEEE
Confidence 99999998886 8888754
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-09 Score=102.95 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=58.0
Q ss_pred CCcEEEEEEecCCChhhhhhH------HHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 015833 196 VGKTVGLYFSARWCIPCEKFM------PKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 269 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 269 (399)
.+++++|.|||+||++|.... |.++++++.+++. ++.++.|.++..
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~---------~v~~~~Vd~~~~------------------- 80 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK---------GVGFGLVDSEKD------------------- 80 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT---------TEEEEEEETTTT-------------------
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC---------CceEEEEeCccc-------------------
Confidence 368999999999999973322 5777888777643 578888877754
Q ss_pred CchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 270 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 270 ~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
..+++.|+|+++||++++ ++|+++...|
T Consensus 81 ----~~l~~~~~V~~~PTl~~f-~~G~~~~y~G 108 (367)
T 3us3_A 81 ----AAVAKKLGLTEEDSIYVF-KEDEVIEYDG 108 (367)
T ss_dssp ----HHHHHHHTCCSTTEEEEE-ETTEEEECCS
T ss_pred ----HHHHHHcCCCcCceEEEE-ECCcEEEeCC
Confidence 789999999999999999 6888765443
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-10 Score=95.35 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|.. ..++++|+
T Consensus 35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~------------------------~~~~~~~~ 86 (130)
T 1wmj_A 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP----GAVFLKVDVDEL------------------------KEVAEKYN 86 (130)
T ss_dssp TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT----TBCCEECCTTTS------------------------GGGHHHHT
T ss_pred cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CCEEEEEeccch------------------------HHHHHHcC
Confidence 58999999999999999999999999999875 277777766533 56778899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++ + +|+++..
T Consensus 87 v~~~Pt~~~~-~---~g~~~~~ 104 (130)
T 1wmj_A 87 VEAMPTFLFI-K---DGAEADK 104 (130)
T ss_dssp CCSSCCCCBC-T---TTTCCBC
T ss_pred CCccceEEEE-e---CCeEEEE
Confidence 9999998887 5 8877644
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=91.40 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=50.1
Q ss_pred CCEEEEEEecCC--CcccHhhHHHHHHHHHHHhcCCCcEE--EEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 32 GKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFE--VVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 32 gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~--ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
++.++|+|+++| |++|+.+.|.|.++++++ ++ +. ++.|++ +...++++
T Consensus 34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~------------------------d~~~~la~ 85 (142)
T 2es7_A 34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADL------------------------EQSEAIGD 85 (142)
T ss_dssp CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECH------------------------HHHHHHHH
T ss_pred CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEEC------------------------CCCHHHHH
Confidence 456788999887 999999999999999998 32 66 777744 33478999
Q ss_pred hcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|+|.++|+++++ + +|+++.+
T Consensus 86 ~~~V~~iPT~~~f-k---~G~~v~~ 106 (142)
T 2es7_A 86 RFNVRRFPATLVF-T---DGKLRGA 106 (142)
T ss_dssp TTTCCSSSEEEEE-S---CC----C
T ss_pred hcCCCcCCeEEEE-e---CCEEEEE
Confidence 9999999999999 5 8887754
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-10 Score=102.42 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=51.6
Q ss_pred CcEEEEEEecCC--ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCC--EEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 197 GKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALED--FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 197 gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+++|+|.||++| |++|+.+.+.+.++++.+... ... +.++.++.|..
T Consensus 25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~-------~~~~~v~~~~vd~d~~---------------------- 75 (243)
T 2hls_A 25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTR-------NGGKLLKLNVYYRESD---------------------- 75 (243)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEE-------TTEESEEEEEEETTTT----------------------
T ss_pred CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCC-------CCCceeEEEEecCCcC----------------------
Confidence 357899999999 999999999999998764210 001 66777766644
Q ss_pred hHHHHHhCCCCccceEEEEC
Q 015833 273 IKELTKYFDVQGIPCLVIIG 292 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid 292 (399)
..+++.|||.++||+.+++
T Consensus 76 -~~~~~~~gv~~~Pt~~i~~ 94 (243)
T 2hls_A 76 -SDKFSEFKVERVPTVAFLG 94 (243)
T ss_dssp -HHHHHHTTCCSSSEEEETT
T ss_pred -HHHHHhcCCCcCCEEEEEC
Confidence 7799999999999999993
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.88 E-value=7e-09 Score=87.54 Aligned_cols=74 Identities=14% Similarity=0.295 Sum_probs=55.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
.+|+|+|+|+++||.+|+.+.... .++.+.+.+ ++.++.+.+|...
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~----------~fv~v~~d~~~~~--------------------- 89 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----------HFIFWQVYHDSEE--------------------- 89 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----------TEEEEEEESSSHH---------------------
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc----------CeEEEEEecCCHh---------------------
Confidence 489999999999999999976543 334444433 4666666665321
Q ss_pred hHHHHHhCCCCccceEEEECCC-CcEEec
Q 015833 273 IKELTKYFDVQGIPCLVIIGPE-GKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~-G~i~~~ 300 (399)
...+++.|++.++|++++||++ |+.+..
T Consensus 90 ~~~l~~~y~v~~~P~~~fld~~~G~~l~~ 118 (153)
T 2dlx_A 90 GQRYIQFYKLGDFPYVSILDPRTGQKLVE 118 (153)
T ss_dssp HHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence 4678899999999999999998 866554
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-10 Score=90.02 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=53.0
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
-+...+||+|||+||++|+.+.+.+...++.... +..+.++.|+++.+. . ..++..|
T Consensus 16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~-------------------~---~~la~~~ 72 (116)
T 3dml_A 16 DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPL-------------------P---PGLELAR 72 (116)
T ss_dssp ---CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCC-------------------C---TTCBCSS
T ss_pred ccCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCC-------------------c---hhHHHHC
Confidence 3557899999999999999998766554432110 112567778776441 0 4556789
Q ss_pred CCCCcCeEEEEcCCCCCCCeeec
Q 015833 110 DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++||+++++ +|+.+.+
T Consensus 73 ~V~g~PT~i~f~----~G~ev~R 91 (116)
T 3dml_A 73 PVTFTPTFVLMA----GDVESGR 91 (116)
T ss_dssp CCCSSSEEEEEE----TTEEEEE
T ss_pred CCCCCCEEEEEE----CCEEEee
Confidence 999999999998 7877764
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-09 Score=97.84 Aligned_cols=69 Identities=10% Similarity=0.163 Sum_probs=57.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+|++|+|+||++||++|+.+.|.|.++++++. ++.++.|+++ ...++..|+
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~----~v~f~~vd~~-------------------------~~~l~~~~~ 169 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRAS-------------------------NTGAGDRFS 169 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHH-------------------------HHTCSTTSC
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC----CeEEEEEECC-------------------------cHHHHHHCC
Confidence 35899999999999999999999999999874 3778877543 245677899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++..
T Consensus 170 i~~~PTl~~~~----~G~~v~~ 187 (217)
T 2trc_P 170 SDVLPTLLVYK----GGELISN 187 (217)
T ss_dssp GGGCSEEEEEE----TTEEEEE
T ss_pred CCCCCEEEEEE----CCEEEEE
Confidence 99999999996 8888754
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.2e-09 Score=76.63 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=46.7
Q ss_pred EEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCc
Q 015833 35 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 114 (399)
Q Consensus 35 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 114 (399)
+.|+||++||++|+.+.|.+++++++++. ++.++.|+ ..+++++|+|.++
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~---~~~~~~v~---------------------------~~~~~~~~~v~~~ 51 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGI---DAEFEKIK---------------------------EMDQILEAGLTAL 51 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTC---CEEEEEEC---------------------------SHHHHHHHTCSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCC---ceEEEEec---------------------------CHHHHHHCCCCcC
Confidence 46899999999999999999999988764 37777663 1678889999999
Q ss_pred CeEEE
Q 015833 115 PCLVV 119 (399)
Q Consensus 115 P~~~l 119 (399)
|++++
T Consensus 52 Pt~~~ 56 (77)
T 1ilo_A 52 PGLAV 56 (77)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 99998
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=80.10 Aligned_cols=65 Identities=22% Similarity=0.435 Sum_probs=53.9
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 278 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~ 278 (399)
.+++.||++||++|+...+.|+++.+++ ++.+..|++|.+ .+++.
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~------------~i~~~~vDId~d-----------------------~~l~~ 74 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKS------------WFELEVINIDGN-----------------------EHLTR 74 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHS------------CCCCEEEETTTC-----------------------HHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhc------------CCeEEEEECCCC-----------------------HHHHH
Confidence 5789999999999999999999887764 367788888866 56788
Q ss_pred hCCCCccceEEEECCCCcEEec
Q 015833 279 YFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 279 ~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.|++. +|+++++ .+|+.+..
T Consensus 75 ~ygv~-VP~l~~~-~dG~~v~~ 94 (107)
T 2fgx_A 75 LYNDR-VPVLFAV-NEDKELCH 94 (107)
T ss_dssp HSTTS-CSEEEET-TTTEEEEC
T ss_pred HhCCC-CceEEEE-ECCEEEEe
Confidence 89997 9999888 68988743
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=82.86 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+++||++ |++|+.+.|.|++++++|+++ +.++.|++|.. ..+
T Consensus 23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk----------~~f~~vd~d~~-----------------------~~~ 68 (133)
T 2djk_A 23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRGV----------INFGTIDAKAF-----------------------GAH 68 (133)
T ss_dssp TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT----------SEEEEECTTTT-----------------------GGG
T ss_pred CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHHh-----------------------HHH
Confidence 46899999999 899999999999999998754 67777777744 568
Q ss_pred HHhCCCCc--cceEEEECC-CCcE
Q 015833 277 TKYFDVQG--IPCLVIIGP-EGKT 297 (399)
Q Consensus 277 ~~~~~v~~--~P~~~lid~-~G~i 297 (399)
+..|||++ +|++++++. +|+.
T Consensus 69 a~~~gi~~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 69 AGNLNLKTDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp TTTTTCCSSSSSEEEEECTTTCCB
T ss_pred HHHcCCCcccCCEEEEEecCcCcc
Confidence 89999999 999999964 4765
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.71 E-value=9.7e-08 Score=87.00 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=55.4
Q ss_pred CCcEEEEEEe--cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--CHHHHHHHHhcCCCcccccCCc
Q 015833 196 VGKTVGLYFS--ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--DQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 196 ~gk~vll~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~--~~~~~~~~~~~~~~~~~p~~~d 271 (399)
.+++|||.|| ||||+ +.|.|.++++++.+. .+++.|+.|++|. +.
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~-------~~~v~~akVD~d~~g~~-------------------- 80 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKA-------TKDLLIATVGVKDYGEL-------------------- 80 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHH-------CSSEEEEEEEECSSTTC--------------------
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhcc-------CCCeEEEEEECCccccc--------------------
Confidence 3579999999 99998 999999999999751 1368888888775 10
Q ss_pred hhHHHHHhCCCC--ccceEEEECCCCc
Q 015833 272 TIKELTKYFDVQ--GIPCLVIIGPEGK 296 (399)
Q Consensus 272 ~~~~~~~~~~v~--~~P~~~lid~~G~ 296 (399)
.+..+++.|+|+ ++||++++ + |+
T Consensus 81 ~n~~la~~~~V~~~~~PTl~~F-~-G~ 105 (248)
T 2c0g_A 81 ENKALGDRYKVDDKNFPSIFLF-K-GN 105 (248)
T ss_dssp TTHHHHHHTTCCTTSCCEEEEE-S-SS
T ss_pred ccHHHHHHhCCCcCCCCeEEEE-e-CC
Confidence 027899999999 99999999 5 87
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=84.64 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=60.2
Q ss_pred eeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CH---------------
Q 015833 190 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQ--------------- 251 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~--------------- 251 (399)
+.+....++++++.||++|||+|+.+.|.|.++.+ . ++.++.+.... ..
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~---------~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~ 145 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----L---------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDK 145 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----T---------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSH
T ss_pred eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh----C---------CcEEEEEECCccCCCchHHHHHHHHHhccCH
Confidence 44445567899999999999999999999887753 2 46777765421 11
Q ss_pred -HHHHHHHhcCCCc--ccccCCchhHHHHHhCCCCccceEEEECCCCcE
Q 015833 252 -TSFESYFGTMPWL--ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 252 -~~~~~~~~~~~~~--~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
..|..++...+.- ......+.+..+++.|||+++|++++. +|+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~~ 192 (216)
T 1eej_A 146 NKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGTL 192 (216)
T ss_dssp HHHHHHHHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCE
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCeE
Confidence 1233333322210 112233467789999999999998554 4654
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-08 Score=82.03 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
++|+|+|+|+++||..|+.+.... .++.+.++++ +.++.++.|. . ....+.+
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~---------------------~-~~~~l~~ 95 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDS---------------------E-EGQRYIQ 95 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSS---------------------H-HHHHHHH
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCC---------------------H-hHHHHHH
Confidence 589999999999999999997544 3444555443 7777776642 1 1267889
Q ss_pred hcCCCCcCeEEEEcCCCCC-CCee
Q 015833 108 KFDIEGIPCLVVLQPYDDK-DDAT 130 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~-G~i~ 130 (399)
.|++.++|+++++++ + |+.+
T Consensus 96 ~y~v~~~P~~~fld~---~~G~~l 116 (153)
T 2dlx_A 96 FYKLGDFPYVSILDP---RTGQKL 116 (153)
T ss_dssp HHTCCSSSEEEEECT---TTCCCC
T ss_pred HcCCCCCCEEEEEeC---CCCcEe
Confidence 999999999999998 7 6554
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=80.97 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=33.2
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHH
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 227 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~ 227 (399)
...+..-.++++|+.||.+|||+|..+.|.|.++.+++.
T Consensus 14 ~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~ 52 (175)
T 3gyk_A 14 APVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP 52 (175)
T ss_dssp SCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC
Confidence 445666678899999999999999999999999887754
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-08 Score=75.82 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=45.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.||++||++|+...|.|.++..+ . +..|++|.+ .++++.|
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~--------------~-~~~vdid~~-----------------------~~l~~~~ 44 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAG--------------A-FFSVFIDDD-----------------------AALESAY 44 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCC--------------C-EEEEECTTC-----------------------HHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHHHh--------------h-eEEEECCCC-----------------------HHHHHHh
Confidence 6789999999999999888764321 1 456777755 5688889
Q ss_pred CCCccceEEEECCCCcEEe
Q 015833 281 DVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~~ 299 (399)
+++ +|++++ .+|+.+.
T Consensus 45 g~~-vPtl~~--~~G~~v~ 60 (87)
T 1ttz_A 45 GLR-VPVLRD--PMGRELD 60 (87)
T ss_dssp TTT-CSEEEC--TTCCEEE
T ss_pred CCC-cCeEEE--ECCEEEe
Confidence 998 999887 6798874
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-08 Score=75.33 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=48.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.||++||++|+...+.|+++.+++ +..+..+.+|.+.+ ..++++.|
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~------------~~~~~~~~v~~~~~--------------------~~~~~~~~ 51 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPS------------KYTVEIVHLGTDKA--------------------RIAEAEKA 51 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTT------------TEEEEEEETTTCSS--------------------THHHHHHH
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhc------------CCeEEEEEecCChh--------------------hHHHHHHc
Confidence 67799999999999999988776543 35566666664310 25677889
Q ss_pred CCCccceEEEECCCCcEEec
Q 015833 281 DVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~~~ 300 (399)
|+.++|++++ +|+++..
T Consensus 52 gv~~vPt~~i---~g~~~~~ 68 (80)
T 2k8s_A 52 GVKSVPALVI---DGAAFHI 68 (80)
T ss_dssp TCCEEEEEEE---TTEEEEE
T ss_pred CCCcCCEEEE---CCEEEEe
Confidence 9999999877 7887654
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-07 Score=83.13 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=55.1
Q ss_pred CCcEEEEEEec--CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHHHHHHHHhcCCCcccccCC
Q 015833 196 VGKTVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTSFESYFGTMPWLALPFGD 270 (399)
Q Consensus 196 ~gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~~~~~~~~~~~~~~~p~~~ 270 (399)
.+++|+|.||| |||+ +.|.|.++++.+.+. +++.|+.|++|. +.
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~--------~~v~~akVDvd~~g~~~------------------- 69 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS--------DDLLVAEVGISDYGDKL------------------- 69 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC--------TTEEEEEECCCCSSSCC-------------------
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC--------CCeEEEEEeCCcccchh-------------------
Confidence 35799999999 9999 899999999998642 357888888663 21
Q ss_pred chhHHHHHhCCCC--ccceEEEECCCCc
Q 015833 271 PTIKELTKYFDVQ--GIPCLVIIGPEGK 296 (399)
Q Consensus 271 d~~~~~~~~~~v~--~~P~~~lid~~G~ 296 (399)
...+++.|+|. ++||++++ ++|+
T Consensus 70 --~~~l~~~~~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 70 --NMELSEKYKLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp --SHHHHHHTTCCGGGCSEEEEE-ETTC
T ss_pred --hHHHHHHcCCCCCCCCEEEEE-eCCC
Confidence 37899999999 99999999 7776
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=81.75 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=37.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.++++++.||++|||+|..+.|.+.++.+++.+ ++.++.+.++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ----------DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT----------TEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC----------CeEEEEEecc
Confidence 478999999999999999999999998887754 4788888876
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.4e-07 Score=80.09 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=36.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.++++|+.||.+|||+|..+.|.|.++.+++.. ++.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS----------DAYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT----------TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC----------ceEEEEeccc
Confidence 478999999999999999999999998887753 4777777763
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-07 Score=77.76 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++|+|+|||+ |++|+.+.|.|.+++++++++ +.++.|++|.. ..++..||
T Consensus 22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~------------------------~~~a~~~g 73 (133)
T 2djk_A 22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAF------------------------GAHAGNLN 73 (133)
T ss_dssp TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTT------------------------GGGTTTTT
T ss_pred CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHh------------------------HHHHHHcC
Confidence 467899999999 899999999999999998764 78888866533 55778999
Q ss_pred CCC--cCeEEEEc
Q 015833 111 IEG--IPCLVVLQ 121 (399)
Q Consensus 111 v~~--~P~~~lid 121 (399)
|++ +|++++++
T Consensus 74 i~~~~iPtl~i~~ 86 (133)
T 2djk_A 74 LKTDKFPAFAIQE 86 (133)
T ss_dssp CCSSSSSEEEEEC
T ss_pred CCcccCCEEEEEe
Confidence 999 99999998
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.5e-07 Score=68.47 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=49.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+++|||+|+...+.|.++.+++. ++.+..|+++.+.. ...++.+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-----------~i~~~~vdi~~~~~-------------------~~~~l~~~~ 52 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----------DFQYQYVDIRAEGI-------------------TKEDLQQKA 52 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS-----------SCEEEEECHHHHTC-------------------CSHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC-----------CceEEEEecccChH-------------------HHHHHHHHh
Confidence 677999999999999999999887653 57787777653210 014788888
Q ss_pred C--CCccceEEEECCCCcEEe
Q 015833 281 D--VQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 281 ~--v~~~P~~~lid~~G~i~~ 299 (399)
+ +.++|+++ + +|+.+.
T Consensus 53 ~~~~~~vP~i~-~--~g~~i~ 70 (85)
T 1ego_A 53 GKPVETVPQIF-V--DQQHIG 70 (85)
T ss_dssp CCCSCCSCEEE-E--TTEEEE
T ss_pred CCCCceeCeEE-E--CCEEEE
Confidence 8 99999984 4 577764
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.48 E-value=9.1e-08 Score=76.33 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=46.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
++++++ ||++||++|+.+.|.|.++.. .+.++-|..+.+..+. ...+
T Consensus 19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~--------------~~~~v~v~~~~~~~~~------------------~~~l 65 (116)
T 2e7p_A 19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA--------------SYKVVELDELSDGSQL------------------QSAL 65 (116)
T ss_dssp SSSEEE-EECTTCHHHHHHHHHHHHHTC--------------CCEEEEGGGSTTHHHH------------------HHHH
T ss_pred CCCEEE-EECCCChhHHHHHHHHHHcCC--------------CeEEEEccCCCChHHH------------------HHHH
Confidence 345655 999999999999998876532 2444444433321111 2568
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|++.++|++ ++ +|+++..
T Consensus 66 ~~~~~v~~~Pt~-~~--~g~~v~~ 86 (116)
T 2e7p_A 66 AHWTGRGTVPNV-FI--GGKQIGG 86 (116)
T ss_dssp HHHHSCCSSCEE-EE--TTEEEEC
T ss_pred HHHhCCCCcCEE-EE--CCEEECC
Confidence 889999999999 44 6888765
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-07 Score=80.24 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=35.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.++++|+.||.+|||+|..+.|.|.++.+++.+ ++.+..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA----------DVHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT----------TEEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC----------CeEEEEEehh
Confidence 478999999999999999999999988887654 4677766653
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-07 Score=74.04 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=50.5
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
.+++.||++||++|+...|.|.++++++ + +.+..|++|.+ .++.++|++.
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~--i~~~~vDId~d------------------------~~l~~~ygv~- 79 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKS---W--FELEVINIDGN------------------------EHLTRLYNDR- 79 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHS---C--CCCEEEETTTC------------------------HHHHHHSTTS-
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhc---C--CeEEEEECCCC------------------------HHHHHHhCCC-
Confidence 5689999999999999999999998874 2 55666766544 5677889997
Q ss_pred cCeEEEEcCCCCCCCee
Q 015833 114 IPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 114 ~P~~~lid~~~~~G~i~ 130 (399)
+|+++++. +|+.+
T Consensus 80 VP~l~~~~----dG~~v 92 (107)
T 2fgx_A 80 VPVLFAVN----EDKEL 92 (107)
T ss_dssp CSEEEETT----TTEEE
T ss_pred CceEEEEE----CCEEE
Confidence 99998876 67665
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.1e-07 Score=70.32 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=47.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
..++++.|+++||++|+...+.|.++.+ ++.+..|++|... ..++
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~--------------~i~~~~vdi~~~~---------------------~~el 59 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD--------------RFILQEVDITLPE---------------------NSTW 59 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS--------------SSEEEEEETTSST---------------------THHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh--------------CCeEEEEECCCcc---------------------hHHH
Confidence 4568888999999999998888775431 3678888887221 2678
Q ss_pred HHhCCCCccceEEEECCCCcEE
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++.|| .++|+++ + +|+.+
T Consensus 60 ~~~~g-~~vP~l~-~--~g~~~ 77 (100)
T 1wjk_A 60 YERYK-FDIPVFH-L--NGQFL 77 (100)
T ss_dssp HHHSS-SSCSEEE-E--SSSEE
T ss_pred HHHHC-CCCCEEE-E--CCEEE
Confidence 89999 9999764 4 57765
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.2e-06 Score=75.90 Aligned_cols=172 Identities=11% Similarity=0.106 Sum_probs=102.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
..++++|-|+++| |....+.+.++++.+. . +.+..+ . + .++++.|+
T Consensus 26 ~~~v~vVgff~~~---~~~~~~~f~~~A~~l~-~---~~F~~t-~----------------------~----~~v~~~~~ 71 (227)
T 4f9z_D 26 ATEVAVIGFFQDL---EIPAVPILHSMVQKFP-G---VSFGIS-T----------------------D----SEVLTHYN 71 (227)
T ss_dssp TSSEEEEEECSCS---CSTHHHHHHHHTTTCT-T---SEEEEE-C----------------------C----HHHHHHTT
T ss_pred cCCeEEEEEecCC---CchhHHHHHHHHHhCC-C---ceEEEE-C----------------------C----HHHHHHcC
Confidence 4679999999998 4678888999888873 2 444322 1 1 67788899
Q ss_pred CCCcCeEEEEcCCCCCCC-eeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCCCCCce
Q 015833 111 IEGIPCLVVLQPYDDKDD-ATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEK 189 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~-i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~~~ 189 (399)
++. |+++++.+ ... .....+.. .| +.+.+.+..... .. ..|-+. ..+.. .
T Consensus 72 v~~-p~i~lfk~---~~~~~~~~~~~~----~g----~~~~~~l~~fi~---~~------------~~plv~-e~t~~-n 122 (227)
T 4f9z_D 72 ITG-NTICLFRL---VDNEQLNLEDED----IE----SIDATKLSRFIE---IN------------SLHMVT-EYNPV-T 122 (227)
T ss_dssp CCS-SEEEEEET---TTTEEEEECHHH----HH----TCCHHHHHHHHH---HH------------CCCSEE-ECCHH-H
T ss_pred CCC-CeEEEEEe---cCcccccccccc----cC----CCCHHHHHHHHH---Hh------------CCCcee-ecCcc-c
Confidence 998 99999875 221 11111000 00 112222222221 11 122222 11111 1
Q ss_pred eeccccCC-cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 190 VPVSSLVG-KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 190 ~~l~~~~g-k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
...---.+ +.+++.|..+||+.|....+.+.+++++++++ +.++.|..+...
T Consensus 123 ~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~----------i~F~~vd~~~~~----------------- 175 (227)
T 4f9z_D 123 VIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK----------ILFILVDSGMKE----------------- 175 (227)
T ss_dssp HHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT----------CEEEEEETTSGG-----------------
T ss_pred HHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC----------EEEEEeCCccHh-----------------
Confidence 00000013 34566677889999999999999999998764 666666665322
Q ss_pred CCchhHHHHHhCCCC--ccceEEEECCCCc
Q 015833 269 GDPTIKELTKYFDVQ--GIPCLVIIGPEGK 296 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~--~~P~~~lid~~G~ 296 (399)
...+.+.||+. .+|++.+++..+.
T Consensus 176 ----~~~~l~~fgl~~~~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 176 ----NGKVISFFKLKESQLPALAIYQTLDD 201 (227)
T ss_dssp ----GHHHHHHTTCCGGGCSEEEEEESSSC
T ss_pred ----HHHHHHHcCCCcccCCEEEEEECCCC
Confidence 25677889998 8999999986554
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.41 E-value=6.9e-07 Score=79.77 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=56.3
Q ss_pred eccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC----CCh---------------HHHHHhH
Q 015833 26 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD----EDL---------------NAFNNYR 86 (399)
Q Consensus 26 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D----~~~---------------~~~~~~~ 86 (399)
.+...++|++++.||++|||+|+.+.|.|.++.+ .+ +.++.+... ... ..+.++.
T Consensus 80 ~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~~--v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~ 153 (216)
T 1eej_A 80 VYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVM 153 (216)
T ss_dssp EECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred eecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHH
Confidence 3344568999999999999999999999988754 23 777766542 111 1222222
Q ss_pred hcCCCc--ccccCChHHHHHHHhhcCCCCcCeEEE
Q 015833 87 ACMPWL--AVPYSDLETKKALNRKFDIEGIPCLVV 119 (399)
Q Consensus 87 ~~~~~~--~~~~~d~~~~~~l~~~~~v~~~P~~~l 119 (399)
.+.+.. ... ...+...++++.|+|.++|++++
T Consensus 154 ~~~~~~~~~~~-~~v~~~~~l~~~~gV~gtPt~v~ 187 (216)
T 1eej_A 154 AGKSVAPASCD-VDIADHYALGVQLGVSGTPAVVL 187 (216)
T ss_dssp TTCCCCCCCCS-CCHHHHHHHHHHHTCCSSSEEEC
T ss_pred hCCCCChhHHH-HHHHHHHHHHHHcCCCccCEEEE
Confidence 222210 011 13345578999999999999854
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-07 Score=75.04 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++.+++ ||++||++|+.+.|.|.++.. .+.++.|+.+... ......+.+.|+
T Consensus 18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~-------~~~~v~v~~~~~~-------------------~~~~~~l~~~~~ 70 (116)
T 2e7p_A 18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGA-------SYKVVELDELSDG-------------------SQLQSALAHWTG 70 (116)
T ss_dssp TSSSEEE-EECTTCHHHHHHHHHHHHHTC-------CCEEEEGGGSTTH-------------------HHHHHHHHHHHS
T ss_pred cCCCEEE-EECCCChhHHHHHHHHHHcCC-------CeEEEEccCCCCh-------------------HHHHHHHHHHhC
Confidence 5566666 999999999999998887632 2444444332221 112267888999
Q ss_pred CCCcCeEEEEcCCCCCCCeee
Q 015833 111 IEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~ 131 (399)
+.++|++ ++ +|+.+.
T Consensus 71 v~~~Pt~-~~-----~g~~v~ 85 (116)
T 2e7p_A 71 RGTVPNV-FI-----GGKQIG 85 (116)
T ss_dssp CCSSCEE-EE-----TTEEEE
T ss_pred CCCcCEE-EE-----CCEEEC
Confidence 9999999 44 455553
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-07 Score=70.64 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=43.5
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.||++||++|+...|.|.++..++ +..|++|.+ .++.++|+++ +|
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~------------------------~~l~~~~g~~-vP 49 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDD------------------------AALESAYGLR-VP 49 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTC------------------------HHHHHHHTTT-CS
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCC------------------------HHHHHHhCCC-cC
Confidence 68899999999999999887653321 345666543 6678889998 99
Q ss_pred eEEEEcCCCCCCCee
Q 015833 116 CLVVLQPYDDKDDAT 130 (399)
Q Consensus 116 ~~~lid~~~~~G~i~ 130 (399)
++++ . +|+.+
T Consensus 50 tl~~--~---~G~~v 59 (87)
T 1ttz_A 50 VLRD--P---MGREL 59 (87)
T ss_dssp EEEC--T---TCCEE
T ss_pred eEEE--E---CCEEE
Confidence 9988 4 77776
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.39 E-value=8.5e-07 Score=80.75 Aligned_cols=68 Identities=10% Similarity=0.215 Sum_probs=54.2
Q ss_pred CCCEEEEEEe--cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 31 EGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 31 ~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
.+++|||+|| |+||+ +.|.|.++++.+++...++.++.|++|... + .....++++
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g------------------~-~~n~~la~~ 88 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYG------------------E-LENKALGDR 88 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSST------------------T-CTTHHHHHH
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCccc------------------c-cccHHHHHH
Confidence 4689999999 99998 999999999999751125899989876410 0 002789999
Q ss_pred cCCC--CcCeEEEEc
Q 015833 109 FDIE--GIPCLVVLQ 121 (399)
Q Consensus 109 ~~v~--~~P~~~lid 121 (399)
|+|. ++||++++.
T Consensus 89 ~~V~~~~~PTl~~F~ 103 (248)
T 2c0g_A 89 YKVDDKNFPSIFLFK 103 (248)
T ss_dssp TTCCTTSCCEEEEES
T ss_pred hCCCcCCCCeEEEEe
Confidence 9999 999999995
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-07 Score=69.87 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=41.9
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.||++|||+|+...+.|.++.+++ + ..+..+.+|.+. ...++.++|++.++|
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~--~~~~~~~v~~~~---------------------~~~~~~~~~gv~~vP 57 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPS---K--YTVEIVHLGTDK---------------------ARIAEAEKAGVKSVP 57 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTT---T--EEEEEEETTTCS---------------------STHHHHHHHTCCEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhc---C--CeEEEEEecCCh---------------------hhHHHHHHcCCCcCC
Confidence 57789999999999999998876553 2 444445554220 015667889999999
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 58 t~~i 61 (80)
T 2k8s_A 58 ALVI 61 (80)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9876
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-06 Score=73.38 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.4
Q ss_pred CCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 22 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
+..+.+....+|++++.||.+|||+|+.+.|.|.++.+++. ++.++++.+
T Consensus 12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~v~~~~~~~ 61 (175)
T 3gyk_A 12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP----NVRLVYREW 61 (175)
T ss_dssp TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC----CEEEEEEeC
Confidence 34456667789999999999999999999999999888743 255555543
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=76.57 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=38.3
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
..++++++.||.+|||+|+.+.|.+.++.+++.+ ++.+..+.++
T Consensus 23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~~~~ 66 (195)
T 3hd5_A 23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ---DVVLKQVPIA 66 (195)
T ss_dssp STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT---TEEEEEEECC
T ss_pred CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC---CeEEEEEecc
Confidence 3589999999999999999999999999888765 3888888875
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=88.13 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=57.7
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
..++..++.||++||++|+...|.++++..++. ++.+..|++|.. +
T Consensus 115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-----------~v~~~~vd~~~~-----------------------~ 160 (521)
T 1hyu_A 115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-----------RIKHTAIDGGTF-----------------------Q 160 (521)
T ss_dssp CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-----------TEEEEEEETTTC-----------------------H
T ss_pred cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-----------ceEEEEEechhh-----------------------H
Confidence 346678999999999999999999999877653 477888877744 7
Q ss_pred HHHHhCCCCccceEEEECCCCcEEec
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++++.|+|.++|++++ +|+.+..
T Consensus 161 ~~~~~~~i~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 161 NEITERNVMGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp HHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred HHHHHhCCCccCEEEE---CCEEEec
Confidence 8999999999999977 7888765
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-06 Score=79.82 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=54.3
Q ss_pred CCCEEEEEEec--CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 31 EGKVTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 31 ~gk~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
.++++||+||| +||+ +.|.|.++++.+++. .++.++.|++|.. .+.....++++
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~-------------------g~~~~~~l~~~ 76 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDY-------------------GDKLNMELSEK 76 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCS-------------------SSCCSHHHHHH
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCcc-------------------cchhhHHHHHH
Confidence 46899999999 9999 999999999999753 3588888876531 01122789999
Q ss_pred cCCC--CcCeEEEEc
Q 015833 109 FDIE--GIPCLVVLQ 121 (399)
Q Consensus 109 ~~v~--~~P~~~lid 121 (399)
|+|. ++||++++.
T Consensus 77 ~~V~~~~~PTl~~f~ 91 (240)
T 2qc7_A 77 YKLDKESYPVFYLFR 91 (240)
T ss_dssp TTCCGGGCSEEEEEE
T ss_pred cCCCCCCCCEEEEEe
Confidence 9999 999999997
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.9e-06 Score=76.21 Aligned_cols=96 Identities=8% Similarity=0.075 Sum_probs=60.0
Q ss_pred eeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---CCH-------------HH
Q 015833 190 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---RDQ-------------TS 253 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d---~~~-------------~~ 253 (399)
+.+..-.++++++.|+.+|||+|+++.+.+.++.+. + ++.|+.+.+. ... ..
T Consensus 90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g----------~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~ 157 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS--G----------KVQLRTLLVGVIKPESPATAAAILASKDPAK 157 (241)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T----------SEEEEEEECCCSSTTHHHHHHHHHHSSSHHH
T ss_pred ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC--C----------cEEEEEEECCcCCCcHHHHHHHHHHccCHHH
Confidence 444444578899999999999999999998876543 1 4777766652 111 11
Q ss_pred HHHHHh-cCC--Cccc--------ccCCchhHHHHHhCCCCccceEEEECCCCcE
Q 015833 254 FESYFG-TMP--WLAL--------PFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 254 ~~~~~~-~~~--~~~~--------p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
+-.+.. .+. .+.- ....+.+..+++.+||+++|++++.|.+|++
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 158 TWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp HHHHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred HHHHHHHHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 111111 110 0000 0011245677899999999999999888975
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-06 Score=73.05 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=35.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.++++++.||.++||+|..+.+.+.++.+++.. ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK----------DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT----------TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC----------ceEEEEeCc
Confidence 578899999999999999999999988877643 477777765
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-08 Score=89.76 Aligned_cols=73 Identities=15% Similarity=0.366 Sum_probs=50.6
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
.+.+.+..++..+++|||+|||+|+++.|.++++.+++ . .|.+|....
T Consensus 189 ~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l--------------~--~Vd~d~~d~---------------- 236 (291)
T 3kp9_A 189 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV--------------P--YVECSPNGP---------------- 236 (291)
T ss_dssp HHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS--------------C--EEESCSSCS----------------
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc--------------C--EEEEeecCc----------------
Confidence 55565555555679999999999999999998876432 2 344442100
Q ss_pred CCchhHHHHHhCCCCccceEEEECCCCcE
Q 015833 269 GDPTIKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
.+.+.+++++|+|+++||+++ +|+.
T Consensus 237 -~~~~~~la~~~gI~~vPT~~i---~G~~ 261 (291)
T 3kp9_A 237 -GTPQAQECTEAGITSYPTWII---NGRT 261 (291)
T ss_dssp -SSCCCHHHHTTTCCSTTEEEE---TTEE
T ss_pred -hhhHHHHHHHcCCcccCeEEE---CCEE
Confidence 011378999999999999655 6764
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-06 Score=75.55 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CH----------------HHHHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQ----------------TSFES 256 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~----------------~~~~~ 256 (399)
.++++++.||++|||+|+++.|.+.++.+ . ++.+..+.... .. ..|..
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~---------~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~ 151 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----L---------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNE 151 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----T---------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHH
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----C---------CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHH
Confidence 46899999999999999999999887532 2 36666554321 11 11222
Q ss_pred HHhcCCCcc---cccCCchhHHHHHhCCCCccceEEEECCCCc
Q 015833 257 YFGTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 257 ~~~~~~~~~---~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~ 296 (399)
++.... +. .....+.+..+++.+||+++|++++ .+|+
T Consensus 152 ~~~~~~-~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 152 AEKGNL-PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp HHTTCC-CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred HHcCCC-CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 222111 11 1112235678899999999999987 4676
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.4e-07 Score=84.34 Aligned_cols=68 Identities=12% Similarity=0.340 Sum_probs=47.3
Q ss_pred EEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCCh-HHH
Q 015833 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL-ETK 102 (399)
Q Consensus 24 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~-~~~ 102 (399)
...+++.-++..+++|||+|||||+++.|.++++++++ . .|++|.. |. +.+
T Consensus 189 ~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~-------------------d~~~~~ 240 (291)
T 3kp9_A 189 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPN-------------------GPGTPQ 240 (291)
T ss_dssp HHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSS-------------------CSSSCC
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeec-------------------CchhhH
Confidence 34454443444579999999999999999999987553 1 3444422 11 112
Q ss_pred HHHHhhcCCCCcCeEEE
Q 015833 103 KALNRKFDIEGIPCLVV 119 (399)
Q Consensus 103 ~~l~~~~~v~~~P~~~l 119 (399)
.+++++|+|+++||+++
T Consensus 241 ~~la~~~gI~~vPT~~i 257 (291)
T 3kp9_A 241 AQECTEAGITSYPTWII 257 (291)
T ss_dssp CHHHHTTTCCSTTEEEE
T ss_pred HHHHHHcCCcccCeEEE
Confidence 78899999999999554
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.08 E-value=5e-06 Score=73.08 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=36.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.++++||.||+.|||+|+.+.|.| .++.+++.+ ++.+..+.++.
T Consensus 112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~----------~v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE----------GVKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT----------TCCEEEEECSS
T ss_pred CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC----------CCEEEEeccCc
Confidence 468999999999999999999998 888777753 47788888764
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=70.15 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.++++|+.||..|||+|..+.|.+.++.+++.+ ++.+.-+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD----------DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT----------TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC----------CeEEEEecCC
Confidence 368999999999999999999999888877654 4777777765
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.06 E-value=8.8e-06 Score=60.63 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=44.2
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC--CCC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD--IEG 113 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--v~~ 113 (399)
++.|+++|||+|+...+.|.++..+++ + +.+..|+++.+.+ ...++.+.++ +.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~vdi~~~~~--------------------~~~~l~~~~~~~~~~ 58 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD--D--FQYQYVDIRAEGI--------------------TKEDLQQKAGKPVET 58 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS--S--CEEEEECHHHHTC--------------------CSHHHHHHTCCCSCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC--C--ceEEEEecccChH--------------------HHHHHHHHhCCCCce
Confidence 577999999999999999999887753 2 6777776542210 0146888888 999
Q ss_pred cCeEE
Q 015833 114 IPCLV 118 (399)
Q Consensus 114 ~P~~~ 118 (399)
+|+++
T Consensus 59 vP~i~ 63 (85)
T 1ego_A 59 VPQIF 63 (85)
T ss_dssp SCEEE
T ss_pred eCeEE
Confidence 99983
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=71.32 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC----Ch---------------HHHHHhHhcCCC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE----DL---------------NAFNNYRACMPW 91 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~----~~---------------~~~~~~~~~~~~ 91 (399)
.+|++++.||.+|||+|+++.|.|.++.+ .+ +.+..+.... .. ..+.+++.....
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 57899999999999999999999888543 23 6666554321 11 112222211110
Q ss_pred cc-cccCChHHHHHHHhhcCCCCcCeEEE
Q 015833 92 LA-VPYSDLETKKALNRKFDIEGIPCLVV 119 (399)
Q Consensus 92 ~~-~~~~d~~~~~~l~~~~~v~~~P~~~l 119 (399)
.. ..-...+...++++.++|+++|++++
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi 187 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT 187 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEEC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCEEEE
Confidence 00 00112334578899999999999988
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.05 E-value=7.4e-06 Score=82.91 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=51.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.++..++.||++||++|+...|.+++++.++. ++.+..|+.|.. ++++++|+
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~----~v~~~~vd~~~~------------------------~~~~~~~~ 167 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTF------------------------QNEITERN 167 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC----ceEEEEEechhh------------------------HHHHHHhC
Confidence 56788999999999999999999999887753 388877766533 78899999
Q ss_pred CCCcCeEEE
Q 015833 111 IEGIPCLVV 119 (399)
Q Consensus 111 v~~~P~~~l 119 (399)
|.++|++++
T Consensus 168 i~svPt~~i 176 (521)
T 1hyu_A 168 VMGVPAVFV 176 (521)
T ss_dssp CCSSSEEEE
T ss_pred CCccCEEEE
Confidence 999999976
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=70.40 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
.++++++.||.+|||+|..+.|.|.++.++++. ++.+..+.+
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 62 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS---DAYLRTEHV 62 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT---TEEEEEEEC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC---ceEEEEecc
Confidence 578999999999999999999999999888754 377777765
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=66.83 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=41.6
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+.+....++++|+.|+..+||+|..+.+.+.++.++|.+. .+++++...+.
T Consensus 19 ~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~ 70 (175)
T 1z6m_A 19 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS--------GKVERIIKLFD 70 (175)
T ss_dssp SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT--------TSEEEEEEECC
T ss_pred CcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhC--------CcEEEEEEeCC
Confidence 35566667889999999999999999999999998888432 25888887764
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=69.96 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=36.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
.++++++.||.+|||+|+.+.|.|.++.+++.+ ++.+..+.+
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 65 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA---DVHFVRLPA 65 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT---TEEEEEEEC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC---CeEEEEEeh
Confidence 689999999999999999999999998888765 377776665
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=3.7e-06 Score=65.39 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=43.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
..+++++.|+++||++|+...+.|.++.+ + +.+..|++|.. + ..++.++|+
T Consensus 14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~-----~--i~~~~vdi~~~-------------------~---~~el~~~~g 64 (100)
T 1wjk_A 14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD-----R--FILQEVDITLP-------------------E---NSTWYERYK 64 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHHHTSTTSS-----S--SEEEEEETTSS-------------------T---THHHHHHSS
T ss_pred CCCCEEEEEeCCCCcchHHHHHHHHHhhh-----C--CeEEEEECCCc-------------------c---hHHHHHHHC
Confidence 35678899999999999999998876532 2 66677776521 1 167888999
Q ss_pred CCCcCeEE
Q 015833 111 IEGIPCLV 118 (399)
Q Consensus 111 v~~~P~~~ 118 (399)
.++|+++
T Consensus 65 -~~vP~l~ 71 (100)
T 1wjk_A 65 -FDIPVFH 71 (100)
T ss_dssp -SSCSEEE
T ss_pred -CCCCEEE
Confidence 9999763
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=97.93 E-value=5.2e-05 Score=68.66 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=59.7
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC---CC-------------hHHHHHhHh-
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD---ED-------------LNAFNNYRA- 87 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D---~~-------------~~~~~~~~~- 87 (399)
+.+..-++|.+++.|+.+|||+|+++.+.+.++.+. + ++.+..+.+- .. ...+.++..
T Consensus 90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 164 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 164 (241)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC----C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence 333444678999999999999999999998876653 2 4777666542 11 111111111
Q ss_pred cCC---Ccccc-cC-----ChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCe
Q 015833 88 CMP---WLAVP-YS-----DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 88 ~~~---~~~~~-~~-----d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i 129 (399)
.+. ..... .+ ..+...++.+.++|.++|++++.+. +|++
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~---~G~~ 212 (241)
T 1v58_A 165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK---ENTL 212 (241)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET---TTEE
T ss_pred HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence 110 00000 00 1123467889999999999999987 7754
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=4.1e-05 Score=56.40 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+++||++|+...+.|.+ . ++.+..|++|.+.+. .+..+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~--------------------~~~~~~~ 46 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMEN-------R---------GFDFEMINVDRVPEA--------------------AEALRAQ 46 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------T---------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C---------CCCeEEEECCCCHHH--------------------HHHHHHh
Confidence 567999999999998877664 2 356777888765421 2223358
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
++.++|+++ + +|+.+
T Consensus 47 g~~~vP~~~-~--~g~~~ 61 (81)
T 1h75_A 47 GFRQLPVVI-A--GDLSW 61 (81)
T ss_dssp TCCSSCEEE-E--TTEEE
T ss_pred CCCccCEEE-E--CCEEE
Confidence 999999984 4 46543
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00023 Score=60.61 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=42.2
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
+.+....++++++.|+..+||+|..+.+.+.++.+++.+.+ ++.++...+.
T Consensus 20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 70 (175)
T 1z6m_A 20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFD 70 (175)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECC
T ss_pred cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeCC
Confidence 55666788999999999999999999999999999885443 4888877663
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=9.8e-05 Score=53.27 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=40.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+++||++|+...+.|+++ ++.+..+.++.+.+. .+..+.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~----------------~i~~~~~di~~~~~~--------------------~~~~~~~ 46 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA----------------GLAYNTVDISLDDEA--------------------RDYVMAL 46 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT----------------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------------CCCcEEEECCCCHHH--------------------HHHHHHc
Confidence 5678999999999988877642 355666777755321 1222468
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
++.++|++++ +|+.+
T Consensus 47 ~~~~vP~l~~---~g~~~ 61 (75)
T 1r7h_A 47 GYVQAPVVEV---DGEHW 61 (75)
T ss_dssp TCBCCCEEEE---TTEEE
T ss_pred CCCccCEEEE---CCeEE
Confidence 9999999873 56643
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00013 Score=60.72 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=56.1
Q ss_pred eeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe--c---CCCH-------------
Q 015833 190 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS--T---DRDQ------------- 251 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is--~---d~~~------------- 251 (399)
+.+..-.++++|+.|+.++||+|+++.+.+.++ . ++.|+.+. + ..+.
T Consensus 7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~-----------~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~ 71 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM----T-----------DVTVYSFMMPIAGLHPDAARKAQILWCQPDR 71 (147)
T ss_dssp EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC----C-----------SEEEEEEECCCTTTCTTHHHHHHHHHTSSSH
T ss_pred eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc----C-----------ceEEEEEEccccccChhHHHHHHHHHcCCCH
Confidence 334344578999999999999999999887643 1 35666554 3 1111
Q ss_pred -HHHHHHHhcCCC----cccccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 252 -TSFESYFGTMPW----LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 252 -~~~~~~~~~~~~----~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
..|...+..-.. -...-..+.+..+++.+||+++||+++ .+|+++
T Consensus 72 ~~a~~~~~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~i 121 (147)
T 3gv1_A 72 AKAWTDWMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRTQ 121 (147)
T ss_dssp HHHHHHHHHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCEE
T ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEEe
Confidence 112222221100 001112235778999999999999987 467753
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.5e-05 Score=64.41 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=35.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
.++++++.||.++||+|..+.+.+.++.+++.+ ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK---DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC---ceEEEEeCc
Confidence 678899999999999999999999998887643 377776765
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=97.70 E-value=7.4e-05 Score=65.18 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=36.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
.++++++.||..|||+|+.+.|.+.++.+++.+ ++.+..+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~---~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD---DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT---TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC---CeEEEEecCC
Confidence 479999999999999999999999998887765 3777777764
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=53.63 Aligned_cols=53 Identities=13% Similarity=0.257 Sum_probs=36.6
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++|||+|+...+.|.+. + +.+..+++|.+.+ . .+..+++++.++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~-------~--i~~~~vdi~~~~~--------------------~-~~~~~~~g~~~vP 52 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR-------G--FDFEMINVDRVPE--------------------A-AEALRAQGFRQLP 52 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHH--------------------H-HHHHHHTTCCSSC
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------C--CCeEEEECCCCHH--------------------H-HHHHHHhCCCccC
Confidence 5679999999999998887752 3 5555666664422 1 2222358999999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
+++
T Consensus 53 ~~~ 55 (81)
T 1h75_A 53 VVI 55 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=2.9e-05 Score=60.39 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=42.7
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH--HHHHHHHhcCCCcccccCCchhHHHH
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ--TSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
.++.|+++|||+|+...+.|.++...+ ++ +..+.+|.+. .+. ...+.
T Consensus 13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~-----------~~--~~~vdi~~~~~~~~~------------------~~~l~ 61 (105)
T 1kte_A 13 KVVVFIKPTCPFCRKTQELLSQLPFKE-----------GL--LEFVDITATSDTNEI------------------QDYLQ 61 (105)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHSCBCT-----------TS--EEEEEGGGSTTHHHH------------------HHHHH
T ss_pred CEEEEEcCCCHhHHHHHHHHHHcCCCC-----------Cc--cEEEEccCCCCHHHH------------------HHHHH
Confidence 356699999999999888776542211 12 4455665431 111 24577
Q ss_pred HhCCCCccceEEEECCCCcEEe
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~ 299 (399)
+.+++.++|+++ + +|+.+.
T Consensus 62 ~~~g~~~vP~i~-~--~g~~i~ 80 (105)
T 1kte_A 62 QLTGARTVPRVF-I--GKECIG 80 (105)
T ss_dssp HHHSCCCSCEEE-E--TTEEEE
T ss_pred HHhCCCCcCeEE-E--CCEEEe
Confidence 788999999974 4 577664
|
| >4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=61.96 Aligned_cols=102 Identities=16% Similarity=0.227 Sum_probs=74.1
Q ss_pred eeecccc--CCcEEEEEEe-cCCChhhhh-hHHHHHHHHHHH-HhhhhhcCCCCCCE-EEEEEecCCCHHHHHHHHhc--
Q 015833 189 KVPVSSL--VGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKI-KQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGT-- 260 (399)
Q Consensus 189 ~~~l~~~--~gk~vll~F~-a~wC~~C~~-~~~~l~~l~~~~-~~~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~-- 260 (399)
++++++. +||.|+|++. +.+.|.|.. .+|.+.+.++++ +.+ ++ +|+.|++| +.-..+++.+.
T Consensus 59 ~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~k---------Gvd~I~ciSVN-D~FVm~AW~k~~~ 128 (199)
T 4h86_A 59 TVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEK---------EVDQVIVVTVD-NPFANQAWAKSLG 128 (199)
T ss_dssp EEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHS---------CCCEEEEEESS-CHHHHHHHHHHTT
T ss_pred eeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhc---------CCcEEEEEEcC-CHHHHHHHHHHhc
Confidence 5777764 6888888777 568999976 699998888875 544 44 79999998 44444444443
Q ss_pred -CCCcccccCCchhHHHHHhCCCC---------ccceEEEECCCCcEEecc
Q 015833 261 -MPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 261 -~~~~~~p~~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~ 301 (399)
..-..+++..|.+.++++.+|+. +....+|+| ||+|....
T Consensus 129 ~~~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~ 178 (199)
T 4h86_A 129 VKDTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAA 178 (199)
T ss_dssp CCCCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEE
T ss_pred ccccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEE
Confidence 33356888899999999999972 334567886 89987663
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.57 E-value=4.6e-05 Score=60.51 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=43.6
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEE---EEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE---VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
..++.|+++|||+|+...+.|.++ +++ +..|.+|.+.+.. .....
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~----------------~~~~~~~~~vdi~~~~~~~----------------~~~~~ 66 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKF----------------SFKRGAYEIVDIKEFKPEN----------------ELRDY 66 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTS----------------CBCTTSEEEEEGGGSSSHH----------------HHHHH
T ss_pred CCEEEEEeCCChhHHHHHHHHHHc----------------CCCcCceEEEEccCCCChH----------------HHHHH
Confidence 356779999999999888776542 233 5666666442000 01246
Q ss_pred HHHhCCCCccceEEEECCCCcEEe
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~ 299 (399)
+.+.+|+.++|++++ +|+.+.
T Consensus 67 l~~~~g~~~vP~v~i---~g~~ig 87 (114)
T 2hze_A 67 FEQITGGKTVPRIFF---GKTSIG 87 (114)
T ss_dssp HHHHHSCCSSCEEEE---TTEEEE
T ss_pred HHHHhCCCCcCEEEE---CCEEEe
Confidence 788899999998754 577764
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00035 Score=60.44 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=28.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKI 226 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~ 226 (399)
++++||.|+..|||+|..+.|.+.++.+++
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~ 51 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMENFLPVISQEA 51 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence 688999999999999999999999998887
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00025 Score=60.70 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=28.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHh
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQ 228 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~ 228 (399)
.++++|+.|+.-.||+|..+.+.+.++.+++.+
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~ 52 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE 52 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT
T ss_pred CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCC
Confidence 368899999999999999999999988888764
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0031 Score=54.04 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=76.7
Q ss_pred HHHHhhhcCCCCcccCCCCCceeecc----ccCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCE
Q 015833 168 TLINLLTNHDRGYLLGHPPDEKVPVS----SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDF 240 (399)
Q Consensus 168 ~~~~~~g~~~p~f~l~~~g~~~~~l~----~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~ 240 (399)
......|...|.|....-.+ .+..+ .-.+|+++|++.++||+.|..+...+ .++.+-+.+ ++
T Consensus 23 ~f~~~yg~~~p~F~~gs~~~-Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~----------nf 91 (178)
T 2ec4_A 23 EFSSRYGDCHPVFFIGSLEA-AFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ----------NF 91 (178)
T ss_dssp HHHHHHCSCCCCCCCSCHHH-HHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH----------TE
T ss_pred HHHHHhCCCCCCeeeCCHHH-HHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc----------CE
Confidence 34556688888886322222 34444 45689999999999999988866433 234444443 46
Q ss_pred EEEEEecCCCHHHHHHH---Hhc-CCCcccccCCchhHHHH---HhCCCCccceEEEECCCC---cEEecccchhhhhhc
Q 015833 241 EVVFVSTDRDQTSFESY---FGT-MPWLALPFGDPTIKELT---KYFDVQGIPCLVIIGPEG---KTVTKQGRNLINLYQ 310 (399)
Q Consensus 241 ~vv~is~d~~~~~~~~~---~~~-~~~~~~p~~~d~~~~~~---~~~~v~~~P~~~lid~~G---~i~~~~~~~~~~~~g 310 (399)
-+.+.+++.+ +....+ +.. .+ ..++ +.|++.++|++++|++.| +++.+ ..|
T Consensus 92 V~w~~dv~~~-e~~~~~~~~~~~~~g-----------~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~-------~~G 152 (178)
T 2ec4_A 92 ITWAWDLTKD-SNRARFLTMCNRHFG-----------SVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNV-------IQG 152 (178)
T ss_dssp EEEEEECCSH-HHHHHHHHHHHHHTC-----------HHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEE-------ECS
T ss_pred EEEEEeCCCc-hhhhhhhhhhhhhhH-----------HHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEE-------EeC
Confidence 6767766633 222222 211 11 2344 448999999999998764 56665 334
Q ss_pred ccCCCCChHHHHHHHHHHHH
Q 015833 311 ENAYPFTEAKLEFLEKQMEE 330 (399)
Q Consensus 311 ~~~~p~~~~~~~~l~~~~~~ 330 (399)
.. -.++.++.|...+++
T Consensus 153 ~~---~~~~ll~~L~~~~e~ 169 (178)
T 2ec4_A 153 NT---TVDELMMRLMAAMEI 169 (178)
T ss_dssp CC---CHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHHH
Confidence 22 234455555555544
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00088 Score=50.91 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh-
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY- 279 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~- 279 (399)
++.|+.+|||+|.+....|.+ + ++.+..+.+|.+.+..+ .+.+.
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~-------~---------gi~y~~idi~~d~~~~~-------------------~~~~~~ 50 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTA-------N---------RIAYDEVDIEHNRAAAE-------------------FVGSVN 50 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHH-------T---------TCCCEEEETTTCHHHHH-------------------HHHHHS
T ss_pred EEEEcCCCCHhHHHHHHHHHh-------c---------CCceEEEEcCCCHHHHH-------------------HHHHHc
Confidence 566889999999976555442 2 56677788887764332 22222
Q ss_pred CCCCccceEEEECCCCcEEe
Q 015833 280 FDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~ 299 (399)
.|.+.+|++++ .||.++.
T Consensus 51 ~G~~tVP~I~i--~Dg~~l~ 68 (92)
T 2lqo_A 51 GGNRTVPTVKF--ADGSTLT 68 (92)
T ss_dssp SSSSCSCEEEE--TTSCEEE
T ss_pred CCCCEeCEEEE--eCCEEEe
Confidence 36789998765 4677654
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.44 E-value=3e-05 Score=68.05 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=37.8
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCC
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDE 77 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~ 77 (399)
..+++++|.||+.|||||+.+.|.| .++.+++.+ ++.+..+.++.
T Consensus 111 ~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~---~v~~~~~~v~~ 158 (197)
T 1un2_A 111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE---GVKMTKYHVNF 158 (197)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT---TCCEEEEECSS
T ss_pred CCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC---CCEEEEeccCc
Confidence 3578999999999999999999998 888888754 37788888764
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00038 Score=56.53 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=41.4
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH--HHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ--TSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
+.|+++||++|+...+.|.++ ++.+..|.+|.+. .++ ..++.+.
T Consensus 30 vvf~~~~Cp~C~~~~~~L~~~----------------~i~~~~vdid~~~~~~~~------------------~~~l~~~ 75 (130)
T 2cq9_A 30 VIFSKTSCSYCTMAKKLFHDM----------------NVNYKVVELDLLEYGNQF------------------QDALYKM 75 (130)
T ss_dssp EEEECSSCSHHHHHHHHHHHH----------------TCCCEEEETTTSTTHHHH------------------HHHHHHH
T ss_pred EEEEcCCChHHHHHHHHHHHc----------------CCCcEEEECcCCcCcHHH------------------HHHHHHH
Confidence 349999999999988877653 2334556666441 111 2457888
Q ss_pred CCCCccceEEEECCCCcEEe
Q 015833 280 FDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~ 299 (399)
+++..+|+++ + +|+.+.
T Consensus 76 ~g~~~vP~l~-i--~G~~ig 92 (130)
T 2cq9_A 76 TGERTVPRIF-V--NGTFIG 92 (130)
T ss_dssp HSSCCSSEEE-E--TTEEEE
T ss_pred hCCCCcCEEE-E--CCEEEc
Confidence 9999999985 4 677664
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00031 Score=54.41 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=38.7
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++|||+|+...+.|.++...+ .++. .+++|.+.+ .......+.+.+++.++|
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~----~~~~--~vdi~~~~~-----------------~~~~~~~l~~~~g~~~vP 70 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKE----GLLE--FVDITATSD-----------------TNEIQDYLQQLTGARTVP 70 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT----TSEE--EEEGGGSTT-----------------HHHHHHHHHHHHSCCCSC
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCC----CccE--EEEccCCCC-----------------HHHHHHHHHHHhCCCCcC
Confidence 56699999999999999887642221 1144 455543310 012225678889999999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
+++
T Consensus 71 ~i~ 73 (105)
T 1kte_A 71 RVF 73 (105)
T ss_dssp EEE
T ss_pred eEE
Confidence 974
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00021 Score=56.58 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=39.7
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEE---EEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFE---VVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~---ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
..++.|+++|||+|+...+.|.++ + +. +..|++|.+.+ .......+.+.++
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~-------~--~~~~~~~~vdi~~~~~-----------------~~~~~~~l~~~~g 72 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKF-------S--FKRGAYEIVDIKEFKP-----------------ENELRDYFEQITG 72 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTS-------C--BCTTSEEEEEGGGSSS-----------------HHHHHHHHHHHHS
T ss_pred CCEEEEEeCCChhHHHHHHHHHHc-------C--CCcCceEEEEccCCCC-----------------hHHHHHHHHHHhC
Confidence 346779999999999988877642 2 33 45566654310 1122367888899
Q ss_pred CCCcCeEE
Q 015833 111 IEGIPCLV 118 (399)
Q Consensus 111 v~~~P~~~ 118 (399)
+.++|+++
T Consensus 73 ~~~vP~v~ 80 (114)
T 2hze_A 73 GKTVPRIF 80 (114)
T ss_dssp CCSSCEEE
T ss_pred CCCcCEEE
Confidence 99999864
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0011 Score=54.99 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=53.5
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec-----CCC-------------h-HHHHHh
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS-----DED-------------L-NAFNNY 85 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~-----D~~-------------~-~~~~~~ 85 (399)
+.+..-.++.+++.|+-++||+|+++.+.+.++ . ++.++++.+ ..+ . ..|...
T Consensus 7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l------~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~ 78 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM------T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDW 78 (147)
T ss_dssp EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC------C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc------C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHH
Confidence 334444678999999999999999999987654 1 366666543 111 0 112221
Q ss_pred HhcCCCc---ccccCChHHHHHHHhhcCCCCcCeEEE
Q 015833 86 RACMPWL---AVPYSDLETKKALNRKFDIEGIPCLVV 119 (399)
Q Consensus 86 ~~~~~~~---~~~~~d~~~~~~l~~~~~v~~~P~~~l 119 (399)
+.+-... .-.-...+...++++++||+++|++++
T Consensus 79 ~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi 115 (147)
T 3gv1_A 79 MRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF 115 (147)
T ss_dssp HHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC
T ss_pred HhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE
Confidence 1111100 000113345688999999999999998
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0004 Score=49.95 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=36.6
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++||++|+...+.|.++ + +.+..++++.+.+ ....+ +.+++..+|
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~di~~~~~--------------------~~~~~-~~~~~~~vP 52 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-------G--LAYNTVDISLDDE--------------------ARDYV-MALGYVQAP 52 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHH--------------------HHHHH-HHTTCBCCC
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------C--CCcEEEECCCCHH--------------------HHHHH-HHcCCCccC
Confidence 5678999999999998887753 3 4455566654321 11223 468999999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
+++
T Consensus 53 ~l~ 55 (75)
T 1r7h_A 53 VVE 55 (75)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00055 Score=56.87 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=40.8
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH--HHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ--TSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
+.|+++|||+|+...+.|.++ ++.+..|.+|.+. .++ ..++.+.
T Consensus 52 vvf~~~~Cp~C~~~k~~L~~~----------------~i~~~~vdId~~~~~~~~------------------~~~L~~~ 97 (146)
T 2ht9_A 52 VIFSKTSCSYCTMAKKLFHDM----------------NVNYKVVELDLLEYGNQF------------------QDALYKM 97 (146)
T ss_dssp EEEECTTCHHHHHHHHHHHHH----------------TCCCEEEEGGGCTTHHHH------------------HHHHHHH
T ss_pred EEEECCCChhHHHHHHHHHHc----------------CCCeEEEECccCcCCHHH------------------HHHHHHH
Confidence 349999999999988877653 1234445555331 111 2457888
Q ss_pred CCCCccceEEEECCCCcEEe
Q 015833 280 FDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~ 299 (399)
+++.++|+++ + +|+.+.
T Consensus 98 ~g~~tvP~if-i--~G~~ig 114 (146)
T 2ht9_A 98 TGERTVPRIF-V--NGTFIG 114 (146)
T ss_dssp HSCCCSCEEE-E--TTEEEE
T ss_pred hCCCCcCeEE-E--CCEEEe
Confidence 9999999985 4 677664
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.002 Score=49.76 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.6
Q ss_pred EEEEEEecCCChhhhhhHHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLS 221 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~ 221 (399)
..++.|+++|||+|+...+.|.+
T Consensus 22 ~~v~ly~~~~Cp~C~~ak~~L~~ 44 (103)
T 3nzn_A 22 GKVIMYGLSTCVWCKKTKKLLTD 44 (103)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCchHHHHHHHHHH
Confidence 34666999999999998877765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 399 | ||||
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 1e-23 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 7e-22 | |
| d1v5na_ | 89 | g.49.1.3 (A:) Pdi-like hypothetical protein At1g60 | 2e-19 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 4e-16 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 1e-14 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 2e-09 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 3e-08 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 1e-08 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 8e-07 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 4e-08 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 6e-07 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 6e-06 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 3e-04 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 3e-04 | |
| d2hfda1 | 132 | c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H | 5e-04 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 0.002 |
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 93.7 bits (232), Expect = 1e-23
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ + SL GKTV YFSA WC P F P+L+ Y+ + ++FEV+ +S
Sbjct: 19 ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISW 70
Query: 248 DRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 305
D F+ Y+ MPWLALPF D E LT FDV+ IP LV + + G +T Q R +
Sbjct: 71 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 306 I-NLYQENAYPFTE 318
+ + +P+
Sbjct: 131 VVKDPEAKDFPWPN 144
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 88.7 bits (219), Expect = 7e-22
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
++ + L GK YFSA+W PP FT L+D Y+ +FEV+ +S DE
Sbjct: 18 AADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAED 76
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F +Y A MPWLA+P+ D + + L FD++ IP LV ++ D + T ++
Sbjct: 77 FKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEA-DSGNIITTQARTMVVKDP 135
Query: 142 GIRAFPF 148
+ FP+
Sbjct: 136 EAKDFPW 142
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89 | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.4 bits (198), Expect = 2e-19
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 312 NAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGS 370
+ TE +L+ +E + +E AK+ P+ H+ H HEL L + C C+E+G+
Sbjct: 3 SGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGT 58
Query: 371 GWAYQCLECGYEVHPKC 387
W+Y C EC +++H KC
Sbjct: 59 IWSYHCDECDFDLHAKC 75
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 72.7 bits (177), Expect = 4e-16
Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
+V + SLVGKTV LYFSA WC PC F P L Y+K ++FEVV +S
Sbjct: 18 SGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLIS 69
Query: 247 TDRDQTSFESYFGTMPWLALPFG-DPTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN 304
D +++ F Y+G MPWLALPF T+ EL K F V+ IP L+ I + G + Q R
Sbjct: 70 WDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQART 129
Query: 305 -LINLYQENAYPFT 317
+I +P+
Sbjct: 130 RVIEDPDGANFPWP 143
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 68.4 bits (166), Expect = 1e-14
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 16 TSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75
T+ EV + L GK LYFSA+W PPC FT VL + YE+ +FEVV +S
Sbjct: 12 TNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISW 70
Query: 76 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV 135
DE+ + F++Y MPWLA+P+ T L + F +E IP L+ + D
Sbjct: 71 DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINA-DTGAIIGTQART 129
Query: 136 ELIYKYGIRAFPFT 149
+I FP+
Sbjct: 130 RVIEDPDGANFPWP 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 53.5 bits (127), Expect = 2e-09
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
D +V V SL GK V YFSA WC P F P+L+ Y K ++ ++FEVVF +
Sbjct: 16 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCT 67
Query: 247 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 303
D ++ F YF MPWLA+PF +++L+K+F+V+ IP L+ + + G VT + R
Sbjct: 68 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 127
Query: 304 NLINLYQENAYPFTEA 319
L+ + +P+ +A
Sbjct: 128 TLVKDPEGEQFPWKDA 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 50.1 bits (118), Expect = 3e-08
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
EV+V L GK+ YFSA+W PP FT L++ Y++ + +FEVVF + DE+ +
Sbjct: 16 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDK-FHESKNFEVVFCTWDEEEDG 74
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
F Y A MPWLAVP++ E + L++ F++E IP L+ + D D T L+
Sbjct: 75 FAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDA-DSGDVVTTRARATLVKDP 133
Query: 142 GIRAFPFT 149
FP+
Sbjct: 134 EGEQFPWK 141
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 51.4 bits (122), Expect = 1e-08
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 187 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246
+ V K + F A WC C + +K Q+ L
Sbjct: 13 NRPASVYLKKDKPTLIKFWASWCPLCLSELG----QTEKWAQDAKFSSANLITVASPGFL 68
Query: 247 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLI 306
++ F+ ++ + + LP + + ++ P +IG +G
Sbjct: 69 HEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIV----- 123
Query: 307 NLYQENAYPFTEAKLEFLEKQMEEE 331
EA+ L + +
Sbjct: 124 ------KGSINEAQALALIRDPNAD 142
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 46.0 bits (108), Expect = 8e-07
Identities = 16/140 (11%), Positives = 37/140 (26%), Gaps = 16/140 (11%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDF--EVVFVSSDEDL 79
V + K T + F A+W P C + G ++ + + ++ E
Sbjct: 13 NRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKK 72
Query: 80 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 139
+ + + + +I P ++ DG
Sbjct: 73 DGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGK----------DGDVQRI 122
Query: 140 KYGIRAFPFTKEKLEELQKE 159
G + + L ++
Sbjct: 123 VKG----SINEAQALALIRD 138
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 49.9 bits (118), Expect = 4e-08
Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 10/135 (7%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
GE + + K T ++F + C + + ++ ++ + V S++DL+
Sbjct: 19 GEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDP 78
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 141
+++ AL F+ E +P V G ++
Sbjct: 79 GKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDK----------TGQLRHFQA 128
Query: 142 GIRAFPFTKEKLEEL 156
G ++++ +
Sbjct: 129 GGSGMKMLEKRVNRV 143
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 46.5 bits (109), Expect = 6e-07
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 6/114 (5%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
E + K ++F + C C++ MP++ K + L + E
Sbjct: 20 EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPG 79
Query: 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301
+T+ E ++ D LT F+ + +P + G+ Q
Sbjct: 80 KIKETAAEHDITQPIFV-----DSD-HALTDAFENEYVPAYYVFDKTGQLRHFQ 127
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 6e-06
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 8/131 (6%)
Query: 184 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 243
++ ++ G + + WC C+ PK + + + +F +V
Sbjct: 12 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS--------HNFVMV 63
Query: 244 FVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303
+ + + + + F DP+ K + + G P + V + +
Sbjct: 64 NLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMK 123
Query: 304 NLINLYQENAY 314
+A+
Sbjct: 124 EAQERLTGDAF 134
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 15/122 (12%)
Query: 192 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 251
+ + + L WC C+ + L + + E+ +S R +
Sbjct: 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRAE 97
Query: 252 TSFESYF--GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLY 309
+ + D V+ ++ GP+ K G L +
Sbjct: 98 DDLRQRLALERIAIPLVLVLDEEFNL--LGRFVERPQAVLDGGPQALAAYKAGDYLEHAI 155
Query: 310 QE 311
+
Sbjct: 156 GD 157
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247
+ +S GKT+ + A WC+PC K MP +++ L + +
Sbjct: 47 KPKKLSDFRGKTLLVNLWATWCVPCRKEMP----ALDELQGKLSGPNFEVVAINIDTRDP 102
Query: 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300
++ +T + T ++L G+P V++ P+G +
Sbjct: 103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (87), Expect = 5e-04
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 9/96 (9%)
Query: 11 LRRRMTSTKEIGEEVKVSDLEG-------KVTALYFSANWYPPCGNFTGVLVDVYEELRN 63
L +RM + V S L+ V L P + ++ ++ E +
Sbjct: 10 LWQRMLA--RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD 67
Query: 64 NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 99
+ + E + L +
Sbjct: 68 YTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNY 103
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.1 bits (82), Expect = 0.002
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 6/101 (5%)
Query: 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81
G + L+GK L+F W P C L V +
Sbjct: 14 GAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSF 73
Query: 82 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 122
+ Y L + + ++++ P V +
Sbjct: 74 VSKYNLNFTNL------NDADGVIWARYNVPWQPAFVFYRA 108
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 399 | |||
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.92 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.92 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.91 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.91 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.91 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.9 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.9 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.9 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.89 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.89 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.88 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.86 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.86 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.85 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.85 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.84 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.84 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.84 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.83 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.83 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.82 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.81 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.8 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.8 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.8 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.78 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.77 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.77 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.77 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.77 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.77 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.76 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.75 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.75 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.73 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.73 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.71 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.71 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.71 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.71 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.71 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.7 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.7 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.7 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.7 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.69 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.69 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.68 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.67 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.67 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.66 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.65 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.65 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.64 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.64 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.59 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.58 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.58 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.58 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.57 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.56 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.56 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.56 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.56 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.55 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.53 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.53 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.53 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.53 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.52 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.52 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.52 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.51 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.51 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.5 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.49 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.48 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.48 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.47 | |
| d1v5na_ | 89 | Pdi-like hypothetical protein At1g60420 {Thale cre | 99.46 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.46 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.45 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.44 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.42 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.4 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.4 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.38 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.38 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.38 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.38 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.37 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.37 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.36 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.36 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.35 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.35 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.34 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.34 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.33 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.33 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.33 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.33 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.31 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.31 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.3 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.3 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.3 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.3 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.27 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.27 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.24 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.24 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.23 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.19 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 99.19 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.19 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.19 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.19 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.18 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.18 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.17 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.16 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.1 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.1 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.08 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.08 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.04 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.03 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.01 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.94 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.94 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.94 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.93 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.92 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.85 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.79 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.77 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.68 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.68 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.61 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.48 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.43 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.34 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.33 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 98.03 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.01 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.97 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.91 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.65 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.57 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.35 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.22 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 97.19 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.17 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.13 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.91 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 96.88 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.6 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.25 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 96.05 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 95.99 | |
| d1kbea_ | 49 | Kinase suppressor of Ras, Ksr {Mouse (Mus musculus | 95.72 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 95.68 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.6 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 95.43 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 95.26 | |
| d1faqa_ | 52 | RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 94.8 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 94.56 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 94.3 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 93.97 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 93.96 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 93.26 | |
| d1tbna_ | 66 | Protein kinase c-gamma {Rat (Rattus rattus) [TaxId | 93.04 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 92.65 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 92.19 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 91.98 | |
| d1xa6a3 | 62 | Beta-chimaerin, middle domain {Human (Homo sapiens | 91.73 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 91.01 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 90.59 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 90.3 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 89.92 | |
| d2fc7a1 | 69 | Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu | 89.39 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 88.07 | |
| d1r79a_ | 84 | Diacylglycerol kinase delta {Human (Homo sapiens) | 85.09 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 85.02 | |
| d1twfl_ | 46 | RBP12 subunit of RNA polymerase II {Baker's yeast | 84.45 | |
| d2dipa1 | 85 | Zinc finger ZZ-type-containing protein 2 {Human (H | 83.95 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 82.09 | |
| d1tota1 | 52 | CREB-binding protein, CBP {Mouse (Mus musculus) [T | 80.69 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 80.45 |
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.92 E-value=3.7e-25 Score=185.03 Aligned_cols=138 Identities=33% Similarity=0.606 Sum_probs=122.0
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHh
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 87 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~ 87 (399)
+++.+|+|++.+.+|.+++|++++||+|+|+|||+||++|+.++|.|+++++++..+ .++++++|+.|.+.+.+.++.+
T Consensus 4 ~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~~~ 82 (144)
T d1o73a_ 4 LAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYG 82 (144)
T ss_dssp GGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHT
T ss_pred cccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999654 3599999999999999999999
Q ss_pred cCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCC-CCeeeccch-hhhhhcCCCCCCCC
Q 015833 88 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGV-ELIYKYGIRAFPFT 149 (399)
Q Consensus 88 ~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~-G~i~~~~~~-~~i~~~g~~~~p~~ 149 (399)
+.+|..+++.+......+.+.|+|.++|+++|||+ + |+|+..++. +.+++.....+||.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~---~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 83 KMPWLALPFDQRSTVSELGKTFGVESIPTLITINA---DTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp TCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred hccccceeeeccchHHHHHHHcCCCcCCEEEEEEC---CCCEEEeecchhhhhhCcccccCCCC
Confidence 99998888866556678999999999999999998 7 899998874 44566666667763
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.92 E-value=1e-24 Score=182.18 Aligned_cols=131 Identities=32% Similarity=0.635 Sum_probs=117.0
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcc
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLA 93 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~ 93 (399)
.+.+.+.+|..+++++++||+|+|+|||+||++|+.++|.|++++++++++. +++|++|+.|++.+++.+++++++|..
T Consensus 10 ~~~~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~-~~~vi~vs~D~~~~~~~~~~~~~~~~~ 88 (144)
T d1i5ga_ 10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWLA 88 (144)
T ss_dssp CSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCSSHHHHHHHHTTCSSEE
T ss_pred chhhccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhcc-CcEEEEEeccccHHHHHHHHHhCCCCc
Confidence 5777888999999999999999999999999999999999999999998753 699999999999999999999999999
Q ss_pred cccCChHHHHHHHhhcCCCCcCeEEEEcCCCCC-CCeeeccchhhhhhc-CCCCCCC
Q 015833 94 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVELIYKY-GIRAFPF 148 (399)
Q Consensus 94 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~-G~i~~~~~~~~i~~~-g~~~~p~ 148 (399)
+++.+......+.+.|+|.++|+++|||+ + |+|+..+++..+.+. ....|||
T Consensus 89 ~~~~d~~~~~~l~~~y~v~~iPt~~lid~---~~G~vi~~~g~~~v~~d~~~~~fpw 142 (144)
T d1i5ga_ 89 LPFEDRKGMEFLTTGFDVKSIPTLVGVEA---DSGNIITTQARTMVVKDPEAKDFPW 142 (144)
T ss_dssp CCTTCHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred eeeEChHHHHHHHHHCCCCCcCEEEEEeC---CCCEEEeehhHHHHhhCcccccCCC
Confidence 98878776677999999999999999998 7 899999887776554 4455776
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=5.3e-25 Score=192.00 Aligned_cols=165 Identities=10% Similarity=0.061 Sum_probs=129.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 248 (399)
.+|.++|+|++ +.+|+ .++|++++||+|||+|||+|||+|+.++|.|.+++++|++ ++.+++|+.+
T Consensus 7 ~vG~~aPdF~l~d~~G~-~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~----------~v~~v~i~snd~ 75 (187)
T d2cvba1 7 PLESPLIDAELPDPRGG-RYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG----------KVAFVGINANDY 75 (187)
T ss_dssp CTTCBCCCCEEECTTSC-EEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT----------TEEEEEEECCCT
T ss_pred CCCCccCccEeecCCCC-EEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc----------cceeeeeecccc
Confidence 47999999999 99999 9999999999999999999999999999999999999975 4888888752
Q ss_pred -----CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHH
Q 015833 249 -----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 323 (399)
Q Consensus 249 -----~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 323 (399)
.+.+.++++.++.+ +++|+..|.+..+++.|++.++|++||||++|+|+++.+.+.. .+.. .+....+
T Consensus 76 ~~~~~~~~e~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~--~~~~----~~~~~~~ 148 (187)
T d2cvba1 76 EKYPEDAPEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDN--PKDP----SKVQSHD 148 (187)
T ss_dssp TTCGGGSHHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSC--TTCG----GGCCCCH
T ss_pred ccccccchHHHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecCC--CCCC----CCCCHHH
Confidence 24567888888776 7899999999999999999999999999999999998765542 2211 1222256
Q ss_pred HHHHHHHHhccCCCcccccccccceeeeecCCC
Q 015833 324 LEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTG 356 (399)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (399)
|.++|+.++++.+.... ..+.--|.+.|..|
T Consensus 149 L~~Ai~~ll~g~~~~~~--~t~~~GC~ik~~~~ 179 (187)
T d2cvba1 149 LEAAIEALLRGEEPPLK--EAPAIGCTIKWRPG 179 (187)
T ss_dssp HHHHHHHHHTTCCCCSS--CCCCCSEECCCCTT
T ss_pred HHHHHHHHHcCCCCCcc--ccCCCCcceeECCC
Confidence 78888888876644221 12233466655443
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.91 E-value=1.5e-24 Score=181.21 Aligned_cols=123 Identities=44% Similarity=0.780 Sum_probs=111.0
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
.+++.+|+++. ..+|. ++++++++||+|+|+|||+||++|+.++|.|.+++++|... .++++++|+.|.+
T Consensus 3 ~~~k~~P~~~~~~~~~~-~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~--------~~~~vi~is~d~~ 73 (144)
T d1o73a_ 3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISWDEN 73 (144)
T ss_dssp GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSS
T ss_pred CcccCCCCceeeccCCC-EEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc--------cCeEEEEEecchh
Confidence 46788999998 88888 89999999999999999999999999999999999999643 3799999999999
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhCCCCccceEEEECCC-CcEEecccc
Q 015833 251 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR 303 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~ 303 (399)
.+++++++.+++|..+++..+ ....+.+.|+|.++|+++|||++ |+|+.++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~ 128 (144)
T d1o73a_ 74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQAR 128 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHH
T ss_pred HHHHHHHHHhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecch
Confidence 999999999999988888665 45679999999999999999997 999998764
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=5.9e-24 Score=176.06 Aligned_cols=133 Identities=24% Similarity=0.449 Sum_probs=118.2
Q ss_pred hcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 015833 174 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 252 (399)
Q Consensus 174 g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 252 (399)
|..+|+|++ +.+|+ .+++++++||+++|+||++||++|..+++.+.++++++.+. ++.+++|++|.+.+
T Consensus 2 G~~~P~f~l~~~~G~-~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~i~~~~~~~ 71 (137)
T d1st9a_ 2 GSDAPNFVLEDTNGK-RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ---------GVEIVAVNVGESKI 71 (137)
T ss_dssp CEECCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEEESCCHH
T ss_pred cCcCCCeEEECCCcC-EEeHHHhCCCEEEEEEeeccccceeeccccccccccccccc---------ccccccccccchhh
Confidence 678999999 99999 99999999999999999999999999999999999999876 89999999998999
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHH
Q 015833 253 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 328 (399)
Q Consensus 253 ~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~ 328 (399)
++++++++++ +++|+..|....+++.|++.++|+++|+|++|+++.+..+ +.+++.++++.+.|
T Consensus 72 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G-----------~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 72 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG-----------TMTESMIHDYMNLI 135 (137)
T ss_dssp HHHHHHHHTT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEES-----------CCCHHHHHHHHHHH
T ss_pred hHHHHHHHcC-CCccccccccchhhhhhhccccceEEEECCCCEEEEEEEC-----------CCCHHHHHHHHHhh
Confidence 9999999877 6788888888999999999999999999999999988543 33555565555443
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.90 E-value=9.2e-24 Score=176.33 Aligned_cols=138 Identities=32% Similarity=0.631 Sum_probs=121.5
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHh
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 87 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~ 87 (399)
.++.+|+|++.+.+|+++++++++||+|+|+||++||++|+.++|.|.++++++.... ++.+++|+.|.+.+.+..+..
T Consensus 2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~-~~~~v~is~d~~~~~~~~~~~ 80 (144)
T d1o8xa_ 2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGYFA 80 (144)
T ss_dssp GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHHHT
T ss_pred CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccccc-ccccccccccccHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999997653 699999999999999999999
Q ss_pred cCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCC-CCeeeccchhh-hhhcCCCCCCCC
Q 015833 88 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVEL-IYKYGIRAFPFT 149 (399)
Q Consensus 88 ~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~-G~i~~~~~~~~-i~~~g~~~~p~~ 149 (399)
...|..+++...+....+.+.|+|.++|+++|||+ + |+|+..+++.. .++...+.+||.
T Consensus 81 ~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~---~~G~Vi~~~~~~~~~~d~~~~~~~w~ 141 (144)
T d1o8xa_ 81 KMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDA---DSGDVVTTRARATLVKDPEGEQFPWK 141 (144)
T ss_dssp TCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred hccccceeeecccchhhHHHHcCCCcCCEEEEEeC---CCCEEEEEechhhhhhCcccccCCCC
Confidence 99998888766566678999999999999999998 7 89998887554 455555567764
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.90 E-value=9.6e-24 Score=176.23 Aligned_cols=116 Identities=40% Similarity=0.786 Sum_probs=103.9
Q ss_pred CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC
Q 015833 183 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP 262 (399)
Q Consensus 183 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 262 (399)
+.+|. .+++++++||+|+|+|||+||++|+.++|.|.+++++++++ .+++|++|+.|.+.+++++++++++
T Consensus 15 ~~~~~-~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~--------~~~~vi~vs~D~~~~~~~~~~~~~~ 85 (144)
T d1i5ga_ 15 KGAAA-DIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISWDESAEDFKDYYAKMP 85 (144)
T ss_dssp ETTEE-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSSHHHHHHHHTTCS
T ss_pred cCCCC-EeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc--------cCcEEEEEeccccHHHHHHHHHhCC
Confidence 67788 89999999999999999999999999999999999999754 3799999999999999999999999
Q ss_pred CcccccCCch-hHHHHHhCCCCccceEEEECCC-CcEEecccchhhh
Q 015833 263 WLALPFGDPT-IKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLIN 307 (399)
Q Consensus 263 ~~~~p~~~d~-~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~~ 307 (399)
|..+++.... ...+.+.|+|+++|+++|||++ |+|+..+|+..+.
T Consensus 86 ~~~~~~~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~ 132 (144)
T d1i5ga_ 86 WLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132 (144)
T ss_dssp SEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHH
T ss_pred CCceeeEChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHh
Confidence 9888876554 4568999999999999999996 9999998776653
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=3.6e-24 Score=176.72 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=104.8
Q ss_pred hcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 015833 174 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 252 (399)
Q Consensus 174 g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 252 (399)
|+..++|++ +.+|+ ++++++++||+++|+||++|||+|+.++|.|++++++++ ++.+++|+.+.+.+
T Consensus 1 ~d~~~~f~~~~~~G~-~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~-----------~v~~v~v~~~~~~~ 68 (134)
T d1lu4a_ 1 ADERLQFTATTLSGA-PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIATRADVG 68 (134)
T ss_dssp CGGGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHH
T ss_pred CCCCCcceeECCCCC-EEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc-----------cccccccccccchh
Confidence 456899999 99999 999999999999999999999999999999999987653 68999999998999
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 253 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 253 ~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.+++++++++ +.+|+..|....+++.|++.++|+++|||++|+++..
T Consensus 69 ~~~~~~~~~~-~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v 115 (134)
T d1lu4a_ 69 AMQSFVSKYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFV 115 (134)
T ss_dssp HHHHHHHHHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred hhhhhhhhhc-cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEE
Confidence 9999999887 7889998988999999999999999999999998764
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.89 E-value=3.4e-23 Score=172.84 Aligned_cols=124 Identities=39% Similarity=0.760 Sum_probs=112.0
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 251 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 251 (399)
+++..|+|++ +.+|+ ++++++++||+|+|+||++||++|+.++|.|.+++++|... .++.+++|+.|.+.
T Consensus 2 ~~k~~P~~~~~~~~g~-~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~--------~~~~~v~is~d~~~ 72 (144)
T d1o8xa_ 2 LDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCTWDEEE 72 (144)
T ss_dssp GGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCCSH
T ss_pred CCCCCCCcEeEcCCCC-EEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccc--------cccccccccccccH
Confidence 5778999999 99999 99999999999999999999999999999999999999754 37999999999999
Q ss_pred HHHHHHHhcCCCcccccCCc-hhHHHHHhCCCCccceEEEECCC-CcEEecccchh
Q 015833 252 TSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 305 (399)
Q Consensus 252 ~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~ 305 (399)
++++.++....|..+++..+ ....+++.|+|.++|+++|||++ |+|+.++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~ 128 (144)
T d1o8xa_ 73 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARAT 128 (144)
T ss_dssp HHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHH
T ss_pred HHHHHHHhhccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhh
Confidence 99999999999999888654 56789999999999999999997 89998876533
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=5.5e-23 Score=169.40 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=103.8
Q ss_pred CCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHH
Q 015833 178 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 256 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~ 256 (399)
.||++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++++ +..+++|+.+...+..++
T Consensus 6 ~df~~~~~~G~-~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~-----------~~~~v~v~~~d~~~~~~~ 73 (134)
T d1zzoa1 6 LQFSAKTLDGH-DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----------EVTFVGVAGLDQVPAMQE 73 (134)
T ss_dssp GCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHHHHHH
T ss_pred cceeEEcCCCC-EEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc-----------ccccccccccccchhHHH
Confidence 57999 99999 999999999999999999999999999999999998875 357888888888899999
Q ss_pred HHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 257 ~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++..+++..+|+..|....+.+.|++.++|+++|||++|+|....|
T Consensus 74 ~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~g 119 (134)
T d1zzoa1 74 FVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRG 119 (134)
T ss_dssp HHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEES
T ss_pred HHHhcCCcceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEEC
Confidence 9999998889999998899999999999999999999999977543
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=2.5e-23 Score=181.21 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=107.1
Q ss_pred CccccccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec------
Q 015833 2 SLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS------ 75 (399)
Q Consensus 2 ~~~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~------ 75 (399)
-.+++.+|..+|+|+|+|.+|+.++|++++||+|+|+|||+|||+|+.++|.|++++++|+++ +.+++|+.
T Consensus 2 ~~p~l~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~ 78 (187)
T d2cvba1 2 QYPELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKY 78 (187)
T ss_dssp BSCCCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTC
T ss_pred CCCCCCCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccc
Confidence 456778899999999999999999999999999999999999999999999999999999764 88888864
Q ss_pred -CCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhh
Q 015833 76 -DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVEL 137 (399)
Q Consensus 76 -D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~ 137 (399)
+.+.+.++++.++.++......|.+ +.+.+.|++..+|+++|||+ +|+++++..++.
T Consensus 79 ~~~~~e~~~~~~~~~~~~~p~l~D~~--~~~~~~~~v~~~P~~~liD~---~G~i~y~G~idd 136 (187)
T d2cvba1 79 PEDAPEKMAAFAEEHGIFFPYLLDET--QEVAKAYRALRTPEVFLFDE---RRLLRYHGRVND 136 (187)
T ss_dssp GGGSHHHHHHHHHHHTCCSCEEECSS--SHHHHHTTCCEESEEEEECT---TCBEEEEECSSS
T ss_pred cccchHHHHHHHHHhCCcceeeechh--hhhcccccccceeeEEEEcC---CCeEEEEeeecC
Confidence 2345777888887664322222433 78999999999999999999 999998765543
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.86 E-value=5.1e-22 Score=165.63 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=99.5
Q ss_pred CCCCccc-CCCC--------CceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 176 HDRGYLL-GHPP--------DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 176 ~~p~f~l-~~~g--------~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
++|+|++ ..+| . .+++++++||+++|+||++||++|+.++|.+.++++.+ ++++++|+
T Consensus 2 paP~~~lp~~~g~~~~~~~~~-~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~------------~~~~~~i~ 68 (144)
T d1knga_ 2 PAPQTALPPLEGLQADNVQVP-GLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK------------RFQLVGIN 68 (144)
T ss_dssp BCCCCCBCCCTTCEETTEECC-CBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT------------TSEEEEEE
T ss_pred CCCCCCCCCCCCccccCCcCC-ccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc------------CceeEEEE
Confidence 5778877 5555 5 68889999999999999999999999999998876543 57899999
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 247 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.+....+.+++..++++...++..|....+++.|++.++|+++|||++|+|+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G 125 (144)
T d1knga_ 69 YKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVG 125 (144)
T ss_dssp ESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEES
T ss_pred eeechHHHHHHHHHcCCccccccccccchhhhhcCccccceEEEEcCCCeEEEEEeC
Confidence 998999999999988866666777888999999999999999999999999988543
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.86 E-value=1.4e-22 Score=168.80 Aligned_cols=114 Identities=16% Similarity=0.239 Sum_probs=102.0
Q ss_pred ccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-----CHHH
Q 015833 180 YLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-----DQTS 253 (399)
Q Consensus 180 f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-----~~~~ 253 (399)
.+| +.+|+ ++++++++||+++|+|||+||++|+.++|.|.+++++++.. ++.+++|+.+. ...+
T Consensus 6 ~~l~~~~~~-~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~~i~v~~~~~~~~~~~~~ 75 (143)
T d2fy6a1 6 STLKTADNR-PASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS---------SANLITVASPGFLHEKKDGD 75 (143)
T ss_dssp HTCEETTSC-BGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT---------TSEEEEEECTTSTTCCCTTH
T ss_pred ceeECCCCC-EeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccC---------CcEEEEEeeeecccccchhh
Confidence 356 88999 99999999999999999999999999999999999998865 78999999752 3456
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 254 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
..+++...++..+|+..|....+++.|++.++|+++|||++|+|+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G 125 (143)
T d2fy6a1 76 FQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKG 125 (143)
T ss_dssp HHHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEES
T ss_pred hhhhhhhcCCcccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEEC
Confidence 78888888889999999999999999999999999999999999988543
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.2e-21 Score=163.09 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=104.6
Q ss_pred hhcCCCCccc-C--CCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~--~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|.++|+|++ + .+|+ .++++.+.||+++|+||++||++|+.++|.|+++++++++ ++.+++|+++.
T Consensus 3 ~g~~aP~~~~~~~~~ng~-~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~----------~~~~i~v~~~~ 71 (143)
T d2b5xa1 3 LRQPMPELTGEKAWLNGE-VTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD----------QLNVVAVHMPR 71 (143)
T ss_dssp TTCBCCCCCCCSEEESCC-CCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------TSEEEEEECCC
T ss_pred CCCcCCCCcCCccCcCCe-EecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc----------cccceeEEeec
Confidence 6889999997 4 4888 8999999999999999999999999999999999999975 47899998753
Q ss_pred -----CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 250 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
+.+.++++.++++ +++|+..|.+..+++.|++.++|+++|||++|+|+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~ 128 (143)
T d2b5xa1 72 SEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQA 128 (143)
T ss_dssp STTTSSHHHHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEE
T ss_pred cccccchhhhhhHHHhhc-cCccccccCccchHHHcCCCcCCEEEEECCCCEEEEEEE
Confidence 4566788888888 588998898999999999999999999999999998743
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.8e-21 Score=160.92 Aligned_cols=117 Identities=20% Similarity=0.338 Sum_probs=104.0
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
|..+|+|+++|.+|+++++++++||+++|+||++||++|..++|.++++++++.+.+ +.+++|+.|.+.++++++.++
T Consensus 2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~~ 79 (137)
T d1st9a_ 2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKS 79 (137)
T ss_dssp CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHH
T ss_pred cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhhhHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999998876 999999999999999999998
Q ss_pred CCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 89 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 89 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+++......|. ...+++.|++.++|+++|+|+ +|+++..
T Consensus 80 ~~~~~~~~~d~--~~~~~~~~~v~~~P~~~liD~---~G~i~~~ 118 (137)
T d1st9a_ 80 YGVNFPVVLDT--DRQVLDAYDVSPLPTTFLINP---EGKVVKV 118 (137)
T ss_dssp TTCCSCEEEET--TSHHHHHTTCCSSCEEEEECT---TSEEEEE
T ss_pred cCCCccccccc--cchhhhhhhccccceEEEECC---CCEEEEE
Confidence 76421111132 268999999999999999999 9999866
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=2.5e-21 Score=159.44 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=98.0
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
|..+++|++++.+|+++++++++||+++|+|||+|||+|+.++|.|++++++++ ++.+++|+.+.+.+.+.++.++
T Consensus 1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~v~v~~~~~~~~~~~~~~~ 76 (134)
T d1lu4a_ 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSK 76 (134)
T ss_dssp CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc----cccccccccccchhhhhhhhhh
Confidence 456899999999999999999999999999999999999999999999988642 3889999999999999999997
Q ss_pred CCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeee
Q 015833 89 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 89 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~ 131 (399)
++.....+.|.. ..+++.|++.++|++++||+ +|+++.
T Consensus 77 ~~~~~p~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~ 114 (134)
T d1lu4a_ 77 YNLNFTNLNDAD--GVIWARYNVPWQPAFVFYRA---DGTSTF 114 (134)
T ss_dssp HTCCSEEEECTT--SHHHHHTTCCSSSEEEEECT---TSCEEE
T ss_pred hccccceeeCch--HHHHHHcCCCcCCEEEEEeC---CCeEEE
Confidence 764222122332 67999999999999999999 998864
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.84 E-value=1e-20 Score=163.10 Aligned_cols=118 Identities=23% Similarity=0.386 Sum_probs=102.0
Q ss_pred hcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-CH
Q 015833 174 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQ 251 (399)
Q Consensus 174 g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-~~ 251 (399)
+.++|+|++ +.+|+ .+++++++||+|||+||++||++|..+++.++++++++... ++.|++|++|. +.
T Consensus 33 ~~~~Pdf~l~d~~G~-~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~---------~~~vv~vs~d~~~~ 102 (176)
T d1jfua_ 33 PLKLPDLAFEDADGK-PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP---------NFEVVAINIDTRDP 102 (176)
T ss_dssp CCBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT---------TEEEEEEECCCSCT
T ss_pred CCcCCCeEEECCCcC-EEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc---------ccccccccccccch
Confidence 446899999 99999 99999999999999999999999999999999999998765 79999999984 67
Q ss_pred HHHHHHHhcCCCcccccCCchhH----HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 252 TSFESYFGTMPWLALPFGDPTIK----ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 252 ~~~~~~~~~~~~~~~p~~~d~~~----~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+.+++++++.++..+++..|... .+...|++.++|+++|||++|+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~ 156 (176)
T d1jfua_ 103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI 156 (176)
T ss_dssp THHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE
T ss_pred hhhhhhHhhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEE
Confidence 78999999888655556555433 455667899999999999999999874
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.6e-21 Score=159.65 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=94.5
Q ss_pred CCCCCceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 015833 183 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 261 (399)
Q Consensus 183 ~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 261 (399)
+.+|+ .++.+++ +||+|+|+|||+||++|+.++|.|+++++ . ++.+++++.+.+......++.+.
T Consensus 6 d~~g~-~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~---------~~~vi~i~~~~~~~~~~~~~~~~ 71 (136)
T d1z5ye1 6 DNPGQ-FYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----Q---------GIRVVGMNYKDDRQKAISWLKEL 71 (136)
T ss_dssp SSTTC-EECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----T---------TCCEEEEEESCCHHHHHHHHHHH
T ss_pred cCCCc-EecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----h---------hhhhcccccccchhhhHHHHHHc
Confidence 66788 9998888 89999999999999999999999987743 3 57899999998989999999888
Q ss_pred CCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 262 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 262 ~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
++..+++..|.+..+++.|++.++|+++|||++|+|+.+..|
T Consensus 72 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G 113 (136)
T d1z5ye1 72 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 113 (136)
T ss_dssp CCCCSEEEEESSCHHHHHHTCCSBSEEEEECTTSCEEEEEES
T ss_pred CCccceeecccchhHHHhcccCCcceEEEEcCCCEEEEEEEc
Confidence 877777777888899999999999999999999999988543
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=5.1e-21 Score=157.41 Aligned_cols=113 Identities=18% Similarity=0.300 Sum_probs=97.0
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCC
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMP 90 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~ 90 (399)
...+|+++|.+|+++++++++||+++|+|||+|||+|+.++|.|.++++++++ ..++.|+.+++.+...++..+++
T Consensus 4 ~~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~ 79 (134)
T d1zzoa1 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYP 79 (134)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTT
T ss_pred CCcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcC
Confidence 35679999999999999999999999999999999999999999999998753 56788888888889999999877
Q ss_pred Cccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 91 WLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 91 ~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+...+. .|. ..++.+.|++.++|++++||+ +|++...
T Consensus 80 ~~~~~~l~D~--~~~~~~~~~v~~~P~~~iiD~---~G~i~~~ 117 (134)
T d1zzoa1 80 VKTFTQLADT--DGSVWANFGVTQQPAYAFVDP---HGNVDVV 117 (134)
T ss_dssp CTTSEEEECT--TCHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred CcceeEEeec--cchHHHhcCCCccCeEEEECC---CCeEEEE
Confidence 643332 133 268999999999999999999 9998654
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.83 E-value=2.6e-21 Score=164.15 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=116.7
Q ss_pred hhcCCCCccc-CCCCCceeecccc--CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSL--VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~--~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
+|.++|+|++ +.+|+ .++++++ +||+++|.|| ++|||+|..+++.+.++++++.+. ++.+++|+.|
T Consensus 4 vG~~aPdF~L~~~~G~-~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d 73 (160)
T d2cx4a1 4 LGEKAPDFTLPNQDFE-PVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA---------NAEVLAISVD 73 (160)
T ss_dssp TTSBCCCCEECCTTSC-CEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT---------CCEEEEEESS
T ss_pred CCCCCcCeEeECCCCC-EEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccc---------cccccccccc
Confidence 6999999999 99999 9999998 7899999999 889999999999999999998865 8999999998
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC----------CccceEEEECCCCcEEecccchhhhhhcccCCCCCh
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV----------QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 318 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v----------~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 318 (399)
+.+..+++..+.+ +.+++..|.+..+++.||+ ...|++||||++|+|+++..+.. +..+
T Consensus 74 -~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~---------~~~~ 142 (160)
T d2cx4a1 74 -SPWCLKKFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDN---------PLNE 142 (160)
T ss_dssp -CHHHHHHHHHHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSS---------TTCC
T ss_pred -chhhhhhhcccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCC---------CCCC
Confidence 5667777776654 6778888989999999998 35789999999999998753321 3444
Q ss_pred HHHHHHHHHHHHHhcc
Q 015833 319 AKLEFLEKQMEEEAKN 334 (399)
Q Consensus 319 ~~~~~l~~~~~~~~~~ 334 (399)
..++++.+++++++++
T Consensus 143 ~~~~eil~~l~~l~~e 158 (160)
T d2cx4a1 143 PDYDEVVREANKIAGE 158 (160)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHccc
Confidence 5567777777776553
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.82 E-value=3.1e-20 Score=158.26 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=102.8
Q ss_pred HhhhcCCCCccc-C----CCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 015833 171 NLLTNHDRGYLL-G----HPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244 (399)
Q Consensus 171 ~~~g~~~p~f~l-~----~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~ 244 (399)
+++|.++|+|++ + .++. ++++++++||+++|+||.. |||+|..+++.|.+++++|++. +++|++
T Consensus 1 ~lvG~~aP~F~l~~~~~g~~~~-~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~---------g~~vv~ 70 (166)
T d1we0a1 1 SLIGTEVQPFRAQAFQSGKDFF-EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL---------GVEVYS 70 (166)
T ss_dssp CCTTCBCCCCEEEEECSSSCCE-EEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT---------TEEEEE
T ss_pred CCCCCcCCCCEEeeecCCccee-EeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc---------ceEEEe
Confidence 368999999999 4 3344 7999999999999999966 9999999999999999999987 899999
Q ss_pred EecCCCHHHHHHHHhcCC---CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 245 VSTDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~~---~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
||+| +.+..+++.+++. .+.||+..|.+..+++.||+. ..|++||||++|+|++...
T Consensus 71 IS~D-~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i 136 (166)
T d1we0a1 71 VSTD-THFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEI 136 (166)
T ss_dssp EESS-CHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred cccc-cHHHHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEE
Confidence 9999 5555556655432 378999999999999999984 5678999999999988743
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.81 E-value=3e-20 Score=161.95 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=102.8
Q ss_pred hhcCCCCcc----c-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 173 LTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 173 ~g~~~p~f~----l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+.++|||+ + +.+|+ ++++++++||+|||+|| +.||+.|..+++.+.+++++|.+. +++|++||
T Consensus 5 ~~~PAPdFtl~a~l~d~~g~-~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~---------g~~VlgIS 74 (194)
T d1uula_ 5 DLHPAPDFNETALMPNGTFK-KVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI---------GCEVLACS 74 (194)
T ss_dssp TTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred cCCCCCCCcccccccCCCCc-EEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccC---------ceEEEEEe
Confidence 467899998 6 78888 99999999999999999 889999999999999999999876 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCC------CccceEEEECCCCcEEeccc
Q 015833 247 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDV------QGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~ 302 (399)
+|. ....+++.+.+ ..+.||++.|.+.++++.||+ ...|++||||++|+|++...
T Consensus 75 ~Ds-~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~ 141 (194)
T d1uula_ 75 MDS-EYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITV 141 (194)
T ss_dssp SSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred cCc-hhhhhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEE
Confidence 994 34444554432 347899999999999999999 45788999999999998753
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.80 E-value=2.1e-19 Score=154.69 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=100.5
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-ChHHHHHhHh
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-DLNAFNNYRA 87 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-~~~~~~~~~~ 87 (399)
+..+|+|+|+|.+|+.++|++++||+++|+||++||++|+.+++.++++++++++.+ +.+++|++|. +.+.++++.+
T Consensus 33 ~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~ 110 (176)
T d1jfua_ 33 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLK 110 (176)
T ss_dssp CCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHHH
T ss_pred CCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhhhhHh
Confidence 456899999999999999999999999999999999999999999999999998876 8999999874 5678888888
Q ss_pred cCCCcccc-cCCh--HHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 88 CMPWLAVP-YSDL--ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 88 ~~~~~~~~-~~d~--~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++...+ +.+. ...+.+...|++.++|+++|||+ +|+|+.+
T Consensus 111 ~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~---~G~I~~~ 155 (176)
T d1jfua_ 111 EANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDP---QGCEIAT 155 (176)
T ss_dssp HTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECT---TSBEEEE
T ss_pred hhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcC---CCEEEEE
Confidence 77753322 2122 23356677789999999999999 9999866
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=4.1e-20 Score=158.18 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=101.5
Q ss_pred hhcCCCCccc-CCCC---------------CceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCC
Q 015833 173 LTNHDRGYLL-GHPP---------------DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 235 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g---------------~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~ 235 (399)
+|+.+|+|++ +..| + .+++++++||+++|+|| +.|||+|..+++.+.+++++|++.
T Consensus 5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~-~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~------ 77 (169)
T d2bmxa1 5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFT-TITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR------ 77 (169)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEE-EEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT------
T ss_pred CCCCCCCCEEeeccCCccccccccccccccc-EeeHHHHCCCeEEEEEecCCCCcccccccccccccccccccc------
Confidence 7999999999 6666 5 78999999999999999 889999999999999999999976
Q ss_pred CCCCEEEEEEecCCCHHHHHHHHh---cCCCcccccCCchhHHHHHhCCC-----CccceEEEECCCCcEEecc
Q 015833 236 ALEDFEVVFVSTDRDQTSFESYFG---TMPWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 236 ~~~~~~vv~is~d~~~~~~~~~~~---~~~~~~~p~~~d~~~~~~~~~~v-----~~~P~~~lid~~G~i~~~~ 301 (399)
++++++||+|. ....+++.+ ....+.||++.|.+.++++.||| ...|++||||++|+|++..
T Consensus 78 ---g~~vv~is~d~-~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~ 147 (169)
T d2bmxa1 78 ---DAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS 147 (169)
T ss_dssp ---TEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred ---Ccceeeccccc-hhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEE
Confidence 89999999995 333344433 33357899999999999999998 6889999999999998774
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.80 E-value=1.3e-19 Score=154.64 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=101.2
Q ss_pred hhhcCCCCcc----c-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 172 LLTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 172 ~~g~~~p~f~----l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
.+|.++|+|+ + +.+|+ +++|++++||+|+|+|| +.||++|..+++.|.+++++|++. +++|++|
T Consensus 4 kvG~~APdF~~~~~l~d~~g~-~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~---------~~~v~~i 73 (167)
T d1e2ya_ 4 KLNHPAPEFDDMALMPNGTFK-KVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI---------NTEVISC 73 (167)
T ss_dssp CTTSBCCCCEEEEECSSSCEE-EEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred cCCCCCCCCcccccccCCCCc-EEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcC---------ceEEEee
Confidence 4799999998 6 88999 99999999999999999 999999999999999999999976 8999999
Q ss_pred ecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCC------CccceEEEECCCCcEEecc
Q 015833 246 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDV------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~ 301 (399)
|.|. .....++.... .-+.+++..|....+++.|++ ..+|++||||++|+|++..
T Consensus 74 s~d~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~ 140 (167)
T d1e2ya_ 74 SCDS-EYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQII 140 (167)
T ss_dssp ESSC-HHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred cCCc-HHhHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEE
Confidence 9984 34444444322 126788888999999999998 2467999999999998774
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=1.4e-19 Score=156.30 Aligned_cols=161 Identities=13% Similarity=0.159 Sum_probs=119.9
Q ss_pred HhhhcCCCCccc-C-CCC--CceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 171 NLLTNHDRGYLL-G-HPP--DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 171 ~~~g~~~p~f~l-~-~~g--~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
+++|.++|+|++ . .+| . ++++++++||+++|+|| +.||+.|..+++.+++.+++|.+. +++|++|
T Consensus 1 ~lIg~~aP~F~~~a~~~g~~~-~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~---------~~~v~gI 70 (186)
T d1n8ja_ 1 SLINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL---------GVDVYSV 70 (186)
T ss_dssp CCTTCBCCCCEEEEEETTEEE-EEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT---------TEEEEEE
T ss_pred CCCCCcCCCCEeeeeeCCeeE-EEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc---------cEEEEec
Confidence 368999999997 3 344 4 68999999999999999 679999999999999999999876 8999999
Q ss_pred ecCCCHHHHHHHHhcC---CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccCCCC
Q 015833 246 STDRDQTSFESYFGTM---PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 316 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~---~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 316 (399)
|+| +....+++.++. ..+.||++.|.+..+++.||+. ..|++||||++|+|+.....++ .
T Consensus 71 S~D-s~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~--~-------- 139 (186)
T d1n8ja_ 71 STD-THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE--G-------- 139 (186)
T ss_dssp ESS-CHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT--T--------
T ss_pred ccc-CHHHHHHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCC--C--------
Confidence 999 455555555443 4688999999999999999983 4678999999999987753322 1
Q ss_pred ChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCCC
Q 015833 317 TEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 359 (399)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (399)
..+.++++.+.++.+- ....|....+|..|..|...
T Consensus 140 ~~r~~~eiL~~lkaLQ-------~~~~~~g~~~p~~W~~g~~~ 175 (186)
T d1n8ja_ 140 IGRDASDLLRKIKAAQ-------YVAAHPGEVCPAKWKEGEAT 175 (186)
T ss_dssp BCCCHHHHHHHHHHHH-------HHHHSTTCBBCTTCCTTSCC
T ss_pred cccCHHHHHHHHHHHH-------HHHhcCCeEeCCCCCCCCce
Confidence 2223344444444311 12233456777777766543
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.77 E-value=5.3e-20 Score=152.93 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=94.9
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHHHHhHhc
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFNNYRAC 88 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-----~~~~~~~~~~~~ 88 (399)
..+|++.+|++++|++++||+++|+|||+|||+|+.++|.|++++++++..+ +.+++|+.+ .......+++.+
T Consensus 5 ~~~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~ 82 (143)
T d2fy6a1 5 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAG 82 (143)
T ss_dssp HHTCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTT
T ss_pred cceeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhh
Confidence 3468899999999999999999999999999999999999999999998776 888989874 234566677777
Q ss_pred CCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 89 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 89 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++..+|+. .+....+++.|++.++|++++||+ +|+++...
T Consensus 83 ~~~~~~~~~-~D~~~~~~~~~~v~~~P~~~liD~---~G~i~~~~ 123 (143)
T d2fy6a1 83 LNYPKLPVV-TDNGGTIAQSLNISVYPSWALIGK---DGDVQRIV 123 (143)
T ss_dssp SCCTTSCEE-ECTTCHHHHHTTCCSSSEEEEECT---TSCEEEEE
T ss_pred cCCcccccc-cccchHHHHHcCCCccCEEEEECC---CCEEEEEE
Confidence 776555441 222378999999999999999999 99998663
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.77 E-value=7.3e-20 Score=152.35 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=94.0
Q ss_pred ccCCeEEecCCC--------CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 11 LRRRMTSTKEIG--------EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 11 ~~p~f~l~d~~G--------~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
+||+|+|++.+| ..+++++++||+++|+|||+||++|+.++|.++++++.+ ++++++|+.+......
T Consensus 2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~-----~~~~~~i~~~~~~~~~ 76 (144)
T d1knga_ 2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK-----RFQLVGINYKDAADNA 76 (144)
T ss_dssp BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT-----TSEEEEEEESCCHHHH
T ss_pred CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc-----CceeEEEEeeechHHH
Confidence 688888888777 567889999999999999999999999999998876553 3789999999998888
Q ss_pred HHhHhcCCCccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++..++++...+. .|. ...+.+.|++.++|+++|||+ +|+++...
T Consensus 77 ~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~liD~---~G~i~~~~ 123 (144)
T d1knga_ 77 RRFLGRYGNPFGRVGVDA--NGRASIEWGVYGVPETFVVGR---EGTIVYKL 123 (144)
T ss_dssp HHHHHHHCCCCSEEEEET--TSHHHHHTTCCSSCEEEEECT---TSBEEEEE
T ss_pred HHHHHHcCCccccccccc--cchhhhhcCccccceEEEEcC---CCeEEEEE
Confidence 99888766443322 133 277999999999999999999 99999764
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.77 E-value=4.3e-19 Score=151.70 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=100.5
Q ss_pred hhhcCCCCccc-CCCCC----ceeeccccCCc-EEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 015833 172 LLTNHDRGYLL-GHPPD----EKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~----~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~ 244 (399)
++|..+|||++ +.+|. +.++|++++|| +|+|+|| +.|||.|..+++.+++.+++|++. +++|++
T Consensus 2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~---------g~~Vvg 72 (170)
T d1zofa1 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK---------GFNVIG 72 (170)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC---------CeeEec
Confidence 57999999999 66662 16999999995 8999999 889999999999999999999877 899999
Q ss_pred EecCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC-----ccceEEEECCCCcEEecc
Q 015833 245 VSTDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~ 301 (399)
||.|. ....+++.+.. ..+.+|+..|....+.+.||+. ..|++||||++|+|++..
T Consensus 73 is~d~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~ 139 (170)
T d1zofa1 73 VSIDS-EQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (170)
T ss_dssp EESSC-HHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred ccccc-hhhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEE
Confidence 99994 34444444332 3578899999999999999983 678999999999998764
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.77 E-value=8.4e-19 Score=148.08 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=100.2
Q ss_pred CCCCccc----CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 176 HDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 176 ~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
.||+|++ +.+|+ .++|++++||+|+|+|| +.|||.|..+++.+++++++|.+. +.+|++||.| +
T Consensus 2 ~AP~F~l~~~~~~~~~-~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~---------~~~vigIS~d-~ 70 (158)
T d1zyea1 2 HAPYFKGTAVVSGEFK-EISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV---------NCEVVAVSVD-S 70 (158)
T ss_dssp BCCCCEEEEECSSSEE-EEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT---------TEEEEEEESS-C
T ss_pred CCCCCccceeeCCCcc-EEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcC---------CceEEeccCc-C
Confidence 6899985 55667 89999999999999999 789999999999999999999977 8999999999 5
Q ss_pred HHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecc
Q 015833 251 QTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 251 ~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 301 (399)
....+++.+.. ..+.||+..|....+++.||+. +.|++||||++|+|++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~ 133 (158)
T d1zyea1 71 HFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 133 (158)
T ss_dssp HHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHhhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEE
Confidence 55666666643 4689999999999999999985 466899999999999764
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=1.9e-19 Score=149.69 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=98.4
Q ss_pred ccccccCCeEEec--CCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CCh
Q 015833 7 YVQQLRRRMTSTK--EIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d--~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-----~~~ 79 (399)
.+|..+|+|++.+ .+|+.++++.++||+++|+||++||++|+.++|.|+++++++++. +.+++|+.+ .+.
T Consensus 2 k~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~ 78 (143)
T d2b5xa1 2 KLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDP 78 (143)
T ss_dssp CTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSH
T ss_pred CCCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccch
Confidence 4688999999777 589999999999999999999999999999999999999999864 788889874 345
Q ss_pred HHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.++++.+++++...-+.|.. ..+.+.|++.++|++++||+ +|+++...
T Consensus 79 ~~~~~~~~~~~~~~p~~~D~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~~ 127 (143)
T d2b5xa1 79 GKIKETAAEHDITQPIFVDSD--HALTDAFENEYVPAYYVFDK---TGQLRHFQ 127 (143)
T ss_dssp HHHHHHHHHTTCCSCEEECSS--CHHHHHTCCCCSSEEEEECT---TCBEEEEE
T ss_pred hhhhhHHHhhccCccccccCc--cchHHHcCCCcCCEEEEECC---CCEEEEEE
Confidence 667888887764221122332 68899999999999999999 99998763
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=8.5e-19 Score=147.32 Aligned_cols=117 Identities=11% Similarity=0.165 Sum_probs=97.0
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCc-EEEEEE-ecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYF-SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk-~vll~F-~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|.++|+|++ +.+|+ .+++++++|+ +++|.| +++|||+|..+++.+.++++++.+. +++|++|+.|
T Consensus 4 vG~~aPdF~l~d~~G~-~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~---------~~~vi~vs~d- 72 (153)
T d1xvwa1 4 VGATAPDFTLRDQNQQ-LVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND---------DSAALAISVG- 72 (153)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS---------SEEEEEEESC-
T ss_pred CcCCCcCeEEECCCCC-EEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhccc---------ccccccccch-
Confidence 6899999999 99999 9999999994 555554 4889999999999999999998765 8999999998
Q ss_pred CHHHHHHHHhcCCCcccccCCc--hhHHHHHhCCCC------ccceEEEECCCCcEEecc
Q 015833 250 DQTSFESYFGTMPWLALPFGDP--TIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d--~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 301 (399)
+.+..+++.+..+ +.+|+..+ ....+++.||+. ..|++||||++|+|++.+
T Consensus 73 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~ 131 (153)
T d1xvwa1 73 PPPTHKIWATQSG-FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE 131 (153)
T ss_dssp CHHHHHHHHHHHT-CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred hhhHHHHHhhhhc-cceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence 6778888888766 45555433 467899999973 345799999999998764
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.4e-18 Score=151.55 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=104.1
Q ss_pred hhhcCCCCccc----CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|.++|+|++ +.+|+ .++|++++||+++|+|| +.||+.|..++..|.+++++|.+. +++|++||
T Consensus 6 ~VG~~AP~F~l~~~~d~~~~-~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~---------g~~vigIS 75 (197)
T d1qmva_ 6 RIGKPAPDFKATAVVDGAFK-EVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL---------GCEVLGVS 75 (197)
T ss_dssp CTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred cCCCcCCCCCCcceeCCCCc-EEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccC---------CcEEEEEe
Confidence 48999999976 56777 89999999999999999 789999999999999999999976 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccc
Q 015833 247 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 303 (399)
+| +....+++.++. ..+.||++.|...++++.||+. .+|++||||++|+|+.....
T Consensus 76 ~D-~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~ 143 (197)
T d1qmva_ 76 VD-SQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVN 143 (197)
T ss_dssp SS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred cC-CHHHHHhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEec
Confidence 99 444556665543 3588999999999999999984 57889999999999876433
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=6.3e-19 Score=148.61 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=99.4
Q ss_pred hhcCCCCccc-CCCCCceeeccccC--CcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLV--GKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~--gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
+|.++|+|+| +.+|+ .++++++. |++|+++|| +.|||+|..+++.|.+.+++|++ ++.+++||.|
T Consensus 7 vG~~aP~f~L~~~~g~-~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~----------~~~~~~is~d 75 (156)
T d2a4va1 7 IGDPIPDLSLLNEDND-SISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE----------YAAVFGLSAD 75 (156)
T ss_dssp TTCBCCSCEEECTTSC-EEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT----------TCEEEEEESC
T ss_pred CCCCCCCeEEECCCCC-EEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh----------ccceeeeccc
Confidence 7999999999 99999 99999985 567888888 78999999999999999999964 3678999998
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccce-----EEEECCCCcEEecc
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPC-----LVIIGPEGKTVTKQ 301 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~-----~~lid~~G~i~~~~ 301 (399)
+.+..+++.++++ +.||++.|.+.++++.||+...|. .++|+.+|+++.++
T Consensus 76 -~~~~~~~f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~ 131 (156)
T d2a4va1 76 -SVTSQKKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKR 131 (156)
T ss_dssp -CHHHHHHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEE
T ss_pred -hhhhHHhhhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEE
Confidence 7788888888877 789999999999999999866653 34444789998874
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1e-18 Score=143.84 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=87.7
Q ss_pred EEecCCCCEEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCccc
Q 015833 16 TSTKEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAV 94 (399)
Q Consensus 16 ~l~d~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~ 94 (399)
...|..|+.++++++ +||+|+|+|||+||++|+.++|.|+++++ .+ +.+++++.+.+......+..+.++...
T Consensus 3 ~~ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~ 76 (136)
T d1z5ye1 3 ESLDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPYA 76 (136)
T ss_dssp EBSSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TT--CCEEEEEESCCHHHHHHHHHHHCCCCS
T ss_pred ccccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hh--hhhcccccccchhhhHHHHHHcCCccc
Confidence 344777999999998 89999999999999999999999988754 33 889999999888888888886654333
Q ss_pred cc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 95 PY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 95 ~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+. .|. ...+.+.|++.++|++++||+ +|+++...
T Consensus 77 ~~~~d~--~~~~~~~~~v~~~P~~~liD~---~G~i~~~~ 111 (136)
T d1z5ye1 77 LSLFDG--DGMLGLDLGVYGAPETFLIDG---NGIIRYRH 111 (136)
T ss_dssp EEEEES--SCHHHHHHTCCSBSEEEEECT---TSCEEEEE
T ss_pred eeeccc--chhHHHhcccCCcceEEEEcC---CCEEEEEE
Confidence 21 132 267889999999999999999 99999663
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.73 E-value=9.4e-18 Score=149.72 Aligned_cols=119 Identities=11% Similarity=0.172 Sum_probs=100.8
Q ss_pred hhhcCCCCccc-CCCCCceeecccc---CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSL---VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~---~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
++|..+|+|++ +.+|+ +.++++ +||+++|+|| +.|||.|..+++.+.+++++|+++ +++|++||
T Consensus 2 lIGd~aPdF~l~t~~G~--i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~---------g~~vigiS 70 (237)
T d2zcta1 2 LIGERFPEMEVTTDHGV--IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL---------GVDLIGLS 70 (237)
T ss_dssp CTTSBCCCEEEEETTEE--EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEE
T ss_pred CCCCCCCCeEEEcCCCC--EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC---------Ccceeecc
Confidence 58999999999 87774 666654 7999999999 899999999999999999999987 89999999
Q ss_pred cCC--CHHHHHHHHhc--CCCcccccCCchhHHHHHhCCC-------CccceEEEECCCCcEEecc
Q 015833 247 TDR--DQTSFESYFGT--MPWLALPFGDPTIKELTKYFDV-------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 247 ~d~--~~~~~~~~~~~--~~~~~~p~~~d~~~~~~~~~~v-------~~~P~~~lid~~G~i~~~~ 301 (399)
+|. +...|.+..+. ...+.||+..|.+.++++.||+ ...|++||||++|+|+...
T Consensus 71 ~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~ 136 (237)
T d2zcta1 71 VDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML 136 (237)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEE
T ss_pred CCcHHHHHHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEE
Confidence 996 33455554442 3468999999999999999998 4689999999999998764
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=7.8e-18 Score=143.00 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=96.7
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|+| +.+|+ .++|++++||+++|+|| +.|||+|..+++.|++++.++. ++++++||.| +
T Consensus 20 vG~~APdF~L~~~~g~-~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~-----------~~~vv~Is~d-~ 86 (164)
T d1qxha_ 20 AGSKAQTFTLVAKDLS-DVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID-----------NTVVLCISAD-L 86 (164)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST-----------TEEEEEEESS-C
T ss_pred CCCCCCCeEEECCCCC-EEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc-----------cceeeeEEcC-C
Confidence 7999999999 99999 99999999999999999 6699999999999998876543 6899999998 5
Q ss_pred HHHHHHHHhcCCCccccc--CCchhHHHHHhCCCC---------ccceEEEECCCCcEEecccc
Q 015833 251 QTSFESYFGTMPWLALPF--GDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~--~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~ 303 (399)
....+++.+.++ +.+++ ..|.+.++++.||+. ..|++||||++|+|++....
T Consensus 87 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~ 149 (164)
T d1qxha_ 87 PFAQSRFCGAEG-LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLV 149 (164)
T ss_dssp HHHHTTCCSSTT-CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred HHHHHHHHHHhC-CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEc
Confidence 666666666655 44444 356688999999973 24789999999999987543
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.71 E-value=2.4e-18 Score=145.57 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=98.0
Q ss_pred ccccccCCeEEecCCCCEEecccc--CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
.+|..||+|+|+|.+|+.++|+++ +||+++|.|| ++|||+|..+++.++++++++++.+ +.+++|+.| +.+..+
T Consensus 3 ~vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~ 79 (160)
T d2cx4a1 3 ELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLK 79 (160)
T ss_dssp CTTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESS-CHHHHH
T ss_pred cCCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--ccccccccc-chhhhh
Confidence 579999999999999999999998 8999999998 9999999999999999999998876 899999987 456677
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCC----------CCcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDI----------EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v----------~~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.++.+.......|.. ..+.+.|++ ...|+++|||+ +|+|+...
T Consensus 80 ~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~flId~---~G~I~~~~ 134 (160)
T d2cx4a1 80 KFKDENRLAFNLLSDYN--REVIKLYNVYHEDLKGLKMVAKRAVFIVKP---DGTVAYKW 134 (160)
T ss_dssp HHHHHHTCSSEEEECTT--SHHHHHTTCEEEEETTEEEEECCEEEEECT---TSBEEEEE
T ss_pred hhcccceeeEEEeecCC--cchHHHcCccccccccccccceeeEEEEcC---CCEEEEEE
Confidence 77765443222222433 678899987 35789999999 99998764
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=5.9e-18 Score=142.06 Aligned_cols=122 Identities=13% Similarity=0.114 Sum_probs=96.1
Q ss_pred cccccccCCeEEecCCCCEEeccccCCC-EEEE-EEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk-~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
+.+|..+|+|+|+|.+|++++|++++|| +++| +|+++|||+|+.+++.|+++++++++.+ +++++|+.|. .+..+
T Consensus 2 l~vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~--~~vi~vs~d~-~~~~~ 78 (153)
T d1xvwa1 2 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVGP-PPTHK 78 (153)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESCC-HHHHH
T ss_pred CCCcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc--cccccccchh-hhHHH
Confidence 3579999999999999999999999985 4544 4559999999999999999999998776 9999999874 56777
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.++.++.....++.+....+.+.|++. ..|++++||+ +|+|.+..
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~---~G~I~~~~ 131 (153)
T d1xvwa1 79 IWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR---SGIIRFAE 131 (153)
T ss_dssp HHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECT---TSBEEEEE
T ss_pred HHhhhhccceeEEecccccchhHHHhhhhhhccCceeeeEEEECC---CCEEEEEE
Confidence 77776553322222333337788999873 3568999999 99997653
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.71 E-value=2.6e-17 Score=139.91 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=94.8
Q ss_pred ccccccCCeEEec----CCCCEEeccccCCCEEEEEEecC-CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 7 YVQQLRRRMTSTK----EIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 7 ~~~~~~p~f~l~d----~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
.+|..+|+|++++ .++++++|++++||+++|+||.. |||+|..+++.|++++++|++.| ++|++||.|. .++
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D~-~~~ 78 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDT-HFV 78 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEeccccc-HHH
Confidence 4799999999996 45568999999999999999955 99999999999999999999987 9999999984 444
Q ss_pred HHHhHhcC----CCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+++.++. ++.+...+|.+ .++++.||+. ..|+++|||+ +|+|....
T Consensus 79 ~~~~~~~~~~~~~~~fpll~D~~--~~v~~~ygv~~~~~~~~~r~tfvID~---~G~I~~~~ 135 (166)
T d1we0a1 79 HKAWHENSPAVGSIEYIMIGDPS--QTISRQFDVLNEETGLADRGTFIIDP---DGVIQAIE 135 (166)
T ss_dssp HHHHHHSCHHHHTCCSEEEECTT--CHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred HHHHhhhhhhhcccccccccCcc--cHHHHHhCCCccccCcccceEEEECC---CCcEEEEE
Confidence 45555442 22222223443 7899999984 5688999999 99997653
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.71 E-value=6e-18 Score=144.21 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=95.7
Q ss_pred cccccccCCeE----EecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 015833 6 WYVQQLRRRMT----STKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 80 (399)
Q Consensus 6 ~~~~~~~p~f~----l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~ 80 (399)
..+|..||+|+ |+|.+|++++|++++||+++|+|| ++||++|..+++.|+++++++++.+ ++|++||.|...
T Consensus 3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d~~~- 79 (167)
T d1e2ya_ 3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCDSEY- 79 (167)
T ss_dssp CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCHH-
T ss_pred ccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCCcHH-
Confidence 46899999999 678999999999999999999999 9999999999999999999999987 999999998643
Q ss_pred HHHHhHhcCC----CcccccC-ChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRACMP----WLAVPYS-DLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~~~~----~~~~~~~-d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+..++..+.. -..+++. ..+....+.+.|++. .+|+++|||+ +|+|++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~---~G~Ir~~~ 140 (167)
T d1e2ya_ 80 SHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDP---NGKLRQII 140 (167)
T ss_dssp HHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred hHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECC---CCEEEEEE
Confidence 3333333221 1112221 122337888889882 4689999999 99997653
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1e-17 Score=148.25 Aligned_cols=121 Identities=13% Similarity=0.207 Sum_probs=101.3
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCC-cEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
++|..+|+|++ +.+| +++|+++.| |++||+|| +.|||.|..++..+++.+++|.+. +++|++||+|
T Consensus 2 ~VGd~APdF~l~~~~G--~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~---------g~~v~giS~D 70 (220)
T d1prxa_ 2 LLGDVAPNFEANTTVG--RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR---------NVKLIALSID 70 (220)
T ss_dssp CTTCBCCCCEEEETTE--EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS
T ss_pred CCCCCCCCcEeecCCC--CEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc---------cceeeccccc
Confidence 47999999999 7777 489999988 79999999 679999999999999999999976 8999999999
Q ss_pred C--CHHHHHHHHhc------CCCcccccCCchhHHHHHhCCCC------------ccceEEEECCCCcEEecccc
Q 015833 249 R--DQTSFESYFGT------MPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 249 ~--~~~~~~~~~~~------~~~~~~p~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~ 303 (399)
. +..+|.+.+.. ..-+.||+..|.+.++++.||+- ..+++||||++|+|+.....
T Consensus 71 s~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~ 145 (220)
T d1prxa_ 71 SVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILY 145 (220)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEEC
T ss_pred cccchhhhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEe
Confidence 5 33445444432 22488999999999999999984 45789999999999877543
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=1.3e-17 Score=142.33 Aligned_cols=120 Identities=17% Similarity=0.275 Sum_probs=96.1
Q ss_pred cccccccCCeEEecCCC---------------CEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEE
Q 015833 6 WYVQQLRRRMTSTKEIG---------------EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFE 69 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G---------------~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ 69 (399)
+.+|..+|+|+|++..| +.++|++++||+++|+|| +.|||+|..+++.+.+.++++++.| ++
T Consensus 3 l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~ 80 (169)
T d2bmxa1 3 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQ 80 (169)
T ss_dssp CCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EE
T ss_pred CCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC--cc
Confidence 46899999999998888 689999999999999999 9999999999999999999999987 99
Q ss_pred EEEEecCCChHHHHHhHhcCC---Ccccc-cCChHHHHHHHhhcCC-----CCcCeEEEEcCCCCCCCeeecc
Q 015833 70 VVFVSSDEDLNAFNNYRACMP---WLAVP-YSDLETKKALNRKFDI-----EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 70 ii~Vs~D~~~~~~~~~~~~~~---~~~~~-~~d~~~~~~l~~~~~v-----~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++|+.|.... ..++.+.+. .+.+| .+|. +.++++.||| ...|+++|||+ +|+|....
T Consensus 81 vv~is~d~~~~-~~~~~~~~~~~~~~~f~ll~D~--~~~v~~~ygv~~~~~~~~r~~fvID~---~G~I~~~~ 147 (169)
T d2bmxa1 81 ILGVSIDSEFA-HFQWRAQHNDLKTLPFPMLSDI--KRELSQAAGVLNADGVADRVTFIVDP---NNEIQFVS 147 (169)
T ss_dssp EEEEESSCHHH-HHHHHHHCTTGGGCCSCEEECT--TSHHHHHHTCBCTTSSBCEEEEEECT---TSBEEEEE
T ss_pred eeeccccchhh-hhhhcccccccccceEEEEecc--HHHHHHHcCCCccCCccceeEEEEcC---CCEEEEEE
Confidence 99999986432 222322221 11122 2243 3789999998 67899999999 99998653
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.6e-17 Score=140.97 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=94.4
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
..+|..||+|+|+|.+|++++|++++||+++|.|| +.|||+|..+++.|++++.++. ++++++||.|. ....++
T Consensus 18 ~~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d~-~~~~~~ 92 (164)
T d1qxha_ 18 PQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID----NTVVLCISADL-PFAQSR 92 (164)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST----TEEEEEEESSC-HHHHTT
T ss_pred CCCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc----cceeeeEEcCC-HHHHHH
Confidence 46899999999999999999999999999999988 7899999999999999887653 38999999984 455566
Q ss_pred hHhcCCCcccccCChHHHHHHHhhcCCC---------CcCeEEEEcCCCCCCCeeeccc
Q 015833 85 YRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 85 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
+.+..+.......+.+...++.+.||+. ..|++++||+ +|+|++...
T Consensus 93 ~~~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~---~G~I~y~~~ 148 (164)
T d1qxha_ 93 FCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDE---NDNVIFSQL 148 (164)
T ss_dssp CCSSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred HHHHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcC---CCEEEEEEE
Confidence 6665543211111222237888999873 2478999999 999987643
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=1.1e-16 Score=136.87 Aligned_cols=123 Identities=15% Similarity=0.227 Sum_probs=96.8
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAF 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~---~~~~~ 82 (399)
+++..+|+|+|+|.+|+.+++++++||+++|+||++||+ .|...++.|.++++.+++.+.++.+++||+|. +.+.+
T Consensus 6 p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l 85 (172)
T d1xzoa1 6 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQL 85 (172)
T ss_dssp CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHH
T ss_pred CCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHH
Confidence 467789999999999999999999999999999999998 89999999999999998877789999999984 45677
Q ss_pred HHhHhcCC-----CcccccCChH-HHHHHHhhcC-----------CCCcCeEEEEcCCCCCCCeeec
Q 015833 83 NNYRACMP-----WLAVPYSDLE-TKKALNRKFD-----------IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 83 ~~~~~~~~-----~~~~~~~d~~-~~~~l~~~~~-----------v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++|.+.++ |..+...+.. ......+.|+ +.+.|.++|||+ +|+++..
T Consensus 86 ~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~---~G~i~~~ 149 (172)
T d1xzoa1 86 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP---DGKVLKD 149 (172)
T ss_dssp HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT---TSEEEEE
T ss_pred HHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcC---CCeEEEE
Confidence 88887654 4444332222 1122233333 235688999999 9999854
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.69 E-value=5.1e-17 Score=138.58 Aligned_cols=116 Identities=18% Similarity=0.246 Sum_probs=97.2
Q ss_pred CCCCccc-C----CCCCceeeccccCC-cEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 176 HDRGYLL-G----HPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 176 ~~p~f~l-~----~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|||++ + .+++ +++|++++| |+|||+|| +.|||.|..++..+++.+++|++. +++|++||.|
T Consensus 1 kAPdF~l~~~~gd~~~~-~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~---------g~~vigIS~D 70 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFG-EVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER---------NVELLGCSVD 70 (170)
T ss_dssp BCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT---------TEEEEEEESS
T ss_pred CCCCeEeeeecCCCCcc-EEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC---------CeeEecccCC
Confidence 4899998 3 4455 799999998 89999999 789999999999999999999987 8999999999
Q ss_pred CCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC-----ccceEEEECCCCcEEeccc
Q 015833 249 RDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 ~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~ 302 (399)
+....+++.++. ..+.+|++.|.+..+++.||+. ..+++||||++|+|+....
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~ 134 (170)
T d2h01a1 71 -SKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLV 134 (170)
T ss_dssp -CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEE
T ss_pred -cHHHHHhHhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEE
Confidence 444555555432 3478899999999999999983 4579999999999987753
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.69 E-value=2.8e-17 Score=139.43 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=90.9
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|+| +.+|+ .+++++++||+++|.|| +.|||.|..+++.|.+.++++. ++.+++|+.| +
T Consensus 18 vG~~aPdF~L~~~~g~-~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~-----------~~~vv~Is~d-~ 84 (163)
T d1psqa_ 18 VGDKALDFSLTTTDLS-KKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD-----------NTVVLTVSMD-L 84 (163)
T ss_dssp TTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT-----------TEEEEEEESS-C
T ss_pred CCCCCCCeEEECCCCC-EEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc-----------ccceEEEEec-c
Confidence 7999999999 99999 99999999999999999 6699999999999887766653 6899999998 4
Q ss_pred HHHHHHHHhcCCCccccc-CCchhHHHHHhCCCCc------cceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPF-GDPTIKELTKYFDVQG------IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~-~~d~~~~~~~~~~v~~------~P~~~lid~~G~i~~~~~ 302 (399)
....+++....+....+. ..+.+..+.+.||+.. .+++||||++|+|++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~ 143 (163)
T d1psqa_ 85 PFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY 143 (163)
T ss_dssp HHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEE
T ss_pred HHHHHHHHHHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEE
Confidence 444455554433222222 3335678999999742 236899999999998753
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=2.3e-17 Score=140.29 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=88.1
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|.++|+|+| +.+|+ .+++++++||++||+||.. |||.|..+++.|++. +.+. +++|++|+.|
T Consensus 18 ~iG~~aP~F~L~~~~g~-~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~---------g~~vv~Is~d- 83 (166)
T d1xvqa_ 18 AVGSPAPAFTLTGGDLG-VISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER---AAAS---------GATVLCVSKD- 83 (166)
T ss_dssp CTTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH---HHHT---------TCEEEEEESS-
T ss_pred CCcCCCCCeEEECCCCC-EEehHHhCCcEEEEEeeecccccccHHHHHHHhhh---cccc---------cccccccccc-
Confidence 47999999999 99999 9999999999999999955 899999998877654 4444 6899999998
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC---------ccceEEEECCCCcEEeccc
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~ 302 (399)
+..+.+++.+.+.........+....+.+.|++. ..|++||||++|+|++.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~ 145 (166)
T d1xvqa_ 84 LPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL 145 (166)
T ss_dssp CHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred hHHHHHHHHHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEE
Confidence 4556666666555333333445567778888763 2468999999999998753
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=3.6e-17 Score=137.68 Aligned_cols=122 Identities=11% Similarity=0.140 Sum_probs=97.5
Q ss_pred ccccccccccCCeEEecCCCCEEecccc--CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 3 LSQWYVQQLRRRMTSTKEIGEEVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 3 ~~~~~~~~~~p~f~l~d~~G~~v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
+.++.+|..||+|+|+|.+|+.++|+++ +|++|+++|| +.|||+|..+++.|++.+++|++. ..+++||.| +.
T Consensus 2 ~~~L~vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~ 77 (156)
T d2a4va1 2 VNELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SV 77 (156)
T ss_dssp TTCCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CH
T ss_pred CccCCCCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hh
Confidence 5678899999999999999999999998 5778888888 899999999999999999999754 668899987 56
Q ss_pred HHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCe-----EEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC-----LVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~-----~~lid~~~~~G~i~~~~ 133 (399)
++.+++.++++..+...+|.+ .++++.||+...|. .++|+. +|+++.+.
T Consensus 78 ~~~~~f~~~~~l~f~~L~D~~--~~v~~~ygv~~~~~~~~~r~~~i~~---dg~i~~~~ 131 (156)
T d2a4va1 78 TSQKKFQSKQNLPYHLLSDPK--REFIGLLGAKKTPLSGSIRSHFIFV---DGKLKFKR 131 (156)
T ss_dssp HHHHHHHHHHTCSSEEEECTT--CHHHHHHTCBSSSSSCBCCEEEEEE---TTEEEEEE
T ss_pred hhHHhhhcccCccceeccchH--HHHHHHcCCCccccCCeeEEEEEEE---CCeEEEEE
Confidence 777888887663322233543 78999998865553 555556 88887653
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=3.2e-17 Score=140.28 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=93.6
Q ss_pred HhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 171 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
..++.++|+|++ +.+|+ .+++++++||++||+||.+||+ .|...++.|.++++++.+. +.++.+++||+|
T Consensus 5 ~p~~~~~p~F~l~d~~G~-~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~-------~~~v~~v~isiD 76 (172)
T d1xzoa1 5 DPLNYEVEPFTFQNQDGK-NVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-------NIDVRIISFSVD 76 (172)
T ss_dssp SCCCEECCCCEEECTTSC-EEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-------TCCCEEEEEESC
T ss_pred CCCCCcCCCeEEEcCCCC-EEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccc-------cccccccccccc
Confidence 346778899999 99999 9999999999999999999997 7999999999999999765 457999999998
Q ss_pred C---CHHHHHHHHhcCCC--cccccCCch-----hHHHHHhCCC-----------CccceEEEECCCCcEEecc
Q 015833 249 R---DQTSFESYFGTMPW--LALPFGDPT-----IKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 249 ~---~~~~~~~~~~~~~~--~~~p~~~d~-----~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 301 (399)
. +++..++|.+.++- ..+.++.+. .....+.|++ ...|.++|||++|+|+...
T Consensus 77 p~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~ 150 (172)
T d1xzoa1 77 PENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDY 150 (172)
T ss_dssp TTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEE
T ss_pred cccchHHHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEE
Confidence 4 46678888876552 112222221 1112344433 2346799999999999663
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.66 E-value=1e-16 Score=136.00 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=95.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+|+| +.+|+ .++|++++||+++|+||.. |||.|..+++.|++.+++++ +..+++||+|
T Consensus 17 ~vG~~APdF~L~d~~g~-~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-----------~~~vi~iS~d- 83 (164)
T d1q98a_ 17 QVGEIVENFILVGNDLA-DVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-----------NTIVLCISAD- 83 (164)
T ss_dssp CTTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-----------TEEEEEEESS-
T ss_pred CCCCCCCCcEEECCCCC-EEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-----------cceEEeecCC-
Confidence 37999999999 99999 9999999999999999954 88999999999999888874 5799999998
Q ss_pred CHHHHHHHHhcCCCccccc-CCchhHHHHHhCCCC-------c--cceEEEECCCCcEEeccc
Q 015833 250 DQTSFESYFGTMPWLALPF-GDPTIKELTKYFDVQ-------G--IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~-~~d~~~~~~~~~~v~-------~--~P~~~lid~~G~i~~~~~ 302 (399)
+....+++.+..+...++. ..+....+.+.|++. + .|++||||++|+|++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~ 146 (164)
T d1q98a_ 84 LPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 146 (164)
T ss_dssp CHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred cHHHHHHHHHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEE
Confidence 5566677776665433333 333567888899873 2 378999999999998753
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.65 E-value=1.2e-16 Score=140.71 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=97.8
Q ss_pred hhcCCCCccc-CCCCCceeecccc-CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|+.+|+|++ +.++...++++++ .||+++|+|| +.|||.|..++..+.+.+++|.+. +++|++||+|.
T Consensus 4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~---------~~~vigiS~Ds 74 (219)
T d1xcca_ 4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL---------NCKLIGFSCNS 74 (219)
T ss_dssp TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT---------TEEEEEEESSC
T ss_pred CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc---------ceEEEeecCcc
Confidence 7999999999 5543326899996 7899999999 779999999999999999999976 89999999995
Q ss_pred C--HHHHHHHHh---cCCCcccccCCchhHHHHHhCCCC------------ccceEEEECCCCcEEecc
Q 015833 250 D--QTSFESYFG---TMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 ~--~~~~~~~~~---~~~~~~~p~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~ 301 (399)
. ..+|.+..+ ...-+.||+..|.+.++++.||+- ...++||||++|+|+...
T Consensus 75 ~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~ 143 (219)
T d1xcca_ 75 KESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 143 (219)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred HhHHhHHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEE
Confidence 2 233433332 223588999999999999999982 235899999999998764
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.65 E-value=2e-16 Score=137.42 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=94.7
Q ss_pred cccccCCeE----EecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 8 VQQLRRRMT----STKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 8 ~~~~~p~f~----l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.+.+||+|+ ++|.+|++++|++++||+++|+|| +.||++|..+++.|++++++|++.| ++|++||.|.. .+.
T Consensus 5 ~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~Ds~-~s~ 81 (194)
T d1uula_ 5 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDSE-YSH 81 (194)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HHH
T ss_pred cCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecCch-hhh
Confidence 467899999 668899999999999999999999 9999999999999999999999886 99999999854 333
Q ss_pred HHhHhcCC----CcccccC-ChHHHHHHHhhcCC------CCcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMP----WLAVPYS-DLETKKALNRKFDI------EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~----~~~~~~~-d~~~~~~l~~~~~v------~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++.+.+. ...++|. -.+...++++.||+ ...|.+++||+ +|.|.+..
T Consensus 82 ~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~---~G~I~~~~ 140 (194)
T d1uula_ 82 LAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDP---KQNLRQIT 140 (194)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred hhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECC---CCeEEEEE
Confidence 44433321 1122222 12233899999999 34788999999 99998653
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.64 E-value=2.4e-16 Score=134.32 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=93.5
Q ss_pred ccccccCCeEEecCCC-----CEEeccccCCC-EEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 7 YVQQLRRRMTSTKEIG-----EEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G-----~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
.+|+.||+|+|++.+| +.++|+++.|| +++|+|| +.|||.|..+++.+++.++++++.| ++|++||.|...
T Consensus 2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d~~~ 79 (170)
T d1zofa1 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDSEQ 79 (170)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSCHH
T ss_pred CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEecccccchh
Confidence 5799999999999888 47999999986 8999999 9999999999999999999999887 999999998543
Q ss_pred HHHHHhHhcC---C-Cccccc---CChHHHHHHHhhcCCC-----CcCeEEEEcCCCCCCCeeec
Q 015833 80 NAFNNYRACM---P-WLAVPY---SDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 80 ~~~~~~~~~~---~-~~~~~~---~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~~G~i~~~ 132 (399)
. ..++.+.. . -..++| +|. ...+.+.||+. ..|++++||+ +|+|.+.
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~l~D~--~~~v~~~ygv~~~~~~~~r~tfvID~---~G~I~~~ 138 (170)
T d1zofa1 80 V-HFAWKNTPVEKGGIGQVSFPMVADI--TKSISRDYDVLFEEAIALRGAFLIDK---NMKVRHA 138 (170)
T ss_dssp H-HHHHHTSCGGGTCCCCCSSCEEECT--TSHHHHHTTCEETTTEECEEEEEEET---TTEEEEE
T ss_pred h-HHHHHhhhhhcccccCccccccccc--ccHHHHHcCCCccccceeEEEEEEcC---CCeEEEE
Confidence 2 23333322 1 011222 233 37899999983 5789999999 9999865
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=4.2e-16 Score=131.24 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=92.1
Q ss_pred cccCCeEEe---cCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHh
Q 015833 10 QLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 85 (399)
Q Consensus 10 ~~~p~f~l~---d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~ 85 (399)
+.||+|+++ |.+|++++|++++||+|+|+|| +.|||+|..+++.++++++++.+.| .+|++||.|.. .+.+++
T Consensus 1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d~~-~~~~~~ 77 (158)
T d1zyea1 1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDSH-FSHLAW 77 (158)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSCH-HHHHHH
T ss_pred CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCcCH-HHHHHH
Confidence 369999976 5677899999999999999999 9999999999999999999999987 99999999865 334444
Q ss_pred HhcC-------CCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 86 RACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 86 ~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+.. +......+|.. ..+.+.|++. ..|++++||+ +|+|....
T Consensus 78 ~~~~~~~~~~~~~~f~llsD~~--~~~~~~ygv~~~~~g~~~R~tfvID~---~G~I~~~~ 133 (158)
T d1zyea1 78 INTPRKNGGLGHMNIALLSDLT--KQISRDYGVLLEGPGLALRGLFIIDP---NGVIKHLS 133 (158)
T ss_dssp HTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred HhhhHhhccccccccccccccc--cHHHHHHHhccccCCccccEEEEECC---CCEEEEEE
Confidence 4432 21222223444 6799999885 4678999999 99998653
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.59 E-value=1.4e-15 Score=120.28 Aligned_cols=76 Identities=28% Similarity=0.561 Sum_probs=65.7
Q ss_pred ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 192 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 192 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
+.+..||+|+|+|||+||++|+.+.|.++++++++++. +.++.|.+|..
T Consensus 20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~----------~~~~~i~~d~~--------------------- 68 (111)
T d1xwaa_ 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN----------VVVLKVDVDEC--------------------- 68 (111)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------EEEEEEETTTC---------------------
T ss_pred HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc----------eEEEEEEeecC---------------------
Confidence 34446899999999999999999999999999998754 77788877755
Q ss_pred hhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
..+++.|+|.++||++++ ++|+.+.+.
T Consensus 69 --~~l~~~~~V~~~Pt~~~~-~~G~~v~~~ 95 (111)
T d1xwaa_ 69 --EDIAMEYNISSMPTFVFL-KNGVKVEEF 95 (111)
T ss_dssp --HHHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred --cchhhcCCCccccEEEEE-ECCEEEEEE
Confidence 678999999999999999 899998874
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.58 E-value=1.3e-15 Score=128.93 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=89.9
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
...+|..||+|+|+|.+|++++|++++||+++|.|| +.|||+|..+++.|.+.+.+++ ++.++.|+.|.. ....
T Consensus 15 ~l~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d~~-~~~~ 89 (163)
T d1psqa_ 15 QLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD----NTVVLTVSMDLP-FAQK 89 (163)
T ss_dssp CCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT----TEEEEEEESSCH-HHHH
T ss_pred CCCCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc----ccceEEEEeccH-HHHH
Confidence 567899999999999999999999999999999999 8899999999999988777763 388999998754 3333
Q ss_pred HhHhcCCCc--ccccCChHHHHHHHhhcCCCC------cCeEEEEcCCCCCCCeeeccc
Q 015833 84 NYRACMPWL--AVPYSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 84 ~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~~G~i~~~~~ 134 (399)
++.+..+.. .+...+. ...+.+.||+.. .+++++||+ +|+|++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~--~~~~~~~ygv~~~~~~~~~Ra~fvID~---~G~I~y~~~ 143 (163)
T d1psqa_ 90 RWCGAEGLDNAIMLSDYF--DHSFGRDYALLINEWHLLARAVFVLDT---DNTIRYVEY 143 (163)
T ss_dssp HHHHHHTCTTSEEEECTT--TCHHHHHHTCBCTTTCSBCCEEEEECT---TCBEEEEEE
T ss_pred HHHHHcCCcceeeecccc--chhHHHhheeecccccceeEEEEEECC---CCEEEEEEE
Confidence 444432211 1111122 256778888742 246899999 999987643
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.58 E-value=2e-15 Score=127.83 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=93.2
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
..+|..||+|+|+|.+|++++|++++||+++|+|| +.|||.|..+++.|++.+++++ + ..+++||.|.. ++.++
T Consensus 16 p~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~--~~vi~iS~d~~-~~~~~ 90 (164)
T d1q98a_ 16 PQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--N--TIVLCISADLP-FAQAR 90 (164)
T ss_dssp CCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--T--EEEEEEESSCH-HHHTT
T ss_pred CCCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--c--ceEEeecCCcH-HHHHH
Confidence 46899999999999999999999999999999999 6688899999999999999985 3 88999999754 45566
Q ss_pred hHhcCCCc-ccccCChHHHHHHHhhcCCC---------CcCeEEEEcCCCCCCCeeecc
Q 015833 85 YRACMPWL-AVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~~~~~~-~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+..+.. ..++++. ....+.+.|++. ..|++++||+ +|+|++..
T Consensus 91 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~---~G~I~y~~ 145 (164)
T d1q98a_ 91 FCGAEGIENAKTVSTF-RNHALHSQLGVDIQTGPLAGLTSRAVIVLDE---QNNVLHSQ 145 (164)
T ss_dssp CTTTTTCTTEEEEECT-TCTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEE
T ss_pred HHHHhCCccccccccc-cchhHHHhhceecccCccccCcccEEEEECC---CCEEEEEE
Confidence 66655532 2222222 125677777762 2488999999 99998764
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=2.2e-15 Score=127.84 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=85.1
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
..+|..||+|+|+|.+|++++|++++||+++|+|| +.|||.|..+++.|++.+ .+.| ++|++|+.|.. .+..+
T Consensus 17 p~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~---~~~g--~~vv~Is~d~~-~~~~~ 90 (166)
T d1xvqa_ 17 PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERA---AASG--ATVLCVSKDLP-FAQKR 90 (166)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHH---HHTT--CEEEEEESSCH-HHHTT
T ss_pred CCCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhc---cccc--ccccccccchH-HHHHH
Confidence 36799999999999999999999999999999999 668889999998887654 4455 88999998854 44555
Q ss_pred hHhcCCCcccc-cCChHHHHHHHhhcCCC---------CcCeEEEEcCCCCCCCeeeccc
Q 015833 85 YRACMPWLAVP-YSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 85 ~~~~~~~~~~~-~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
+.++....... ..+. ...+.+.|++. ..|++++||+ +|+|++...
T Consensus 91 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~g~~~ra~fvID~---~G~I~y~~~ 145 (166)
T d1xvqa_ 91 FCGAEGTENVMPASAF--RDSFGEDYGVTIADGPMAGLLARAIVVIGA---DGNVAYTEL 145 (166)
T ss_dssp CC------CEEEEECT--TSSHHHHTTCBBCSSTTTTSBCSEEEEECT---TSBEEEEEE
T ss_pred HHHHhCCcccccccch--hHHHHHHhCeeeccCcccCceeeEEEEEeC---CCEEEEEEE
Confidence 55554422221 2122 14556666652 2478999999 999997643
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.6e-15 Score=128.93 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=97.0
Q ss_pred cccccccccCCeEEe---cCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 4 SQWYVQQLRRRMTST---KEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~---d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
....+|..||+|+|+ |.+|++++|++++||+++|+|| +.||+.|.+++..|++.+++|++.| ++|++||.|...
T Consensus 3 ~~~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigIS~D~~~ 80 (197)
T d1qmva_ 3 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQF 80 (197)
T ss_dssp TTBCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH
T ss_pred CCCcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEEecCCHH
Confidence 345789999999875 6788899999999999999999 9999999999999999999999987 999999998653
Q ss_pred HHHHHhHhcC----CC--cccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 80 NAFNNYRACM----PW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 80 ~~~~~~~~~~----~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
+..++.+.. .. +.+| ++|. ..++++.||+. .+|.+++||+ +|.|...
T Consensus 81 -~~~~~~~~~~~~~~~~~~~fpll~D~--~~~va~~ygv~~~~~g~~~R~tfiID~---~g~Ir~~ 140 (197)
T d1qmva_ 81 -THLAWINTPRKEGGLGPLNIPLLADV--TRRLSEDYGVLKTDEGIAYRGLFIIDG---KGVLRQI 140 (197)
T ss_dssp -HHHHHHTSCGGGTCCCSCSSCEEECT--TCHHHHHTTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred -HHHhhhcchhhhcCcCCCccceEecc--chHHHHHhCCCcccCCeeeEEEEEECC---CCcEEEE
Confidence 334444432 11 1122 2243 48999999994 4789999999 9999764
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.56 E-value=4e-15 Score=116.27 Aligned_cols=71 Identities=28% Similarity=0.507 Sum_probs=63.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|+++|+|||+||++|+.+.|.+.++.+++.++ +.++.|++|.. ..+
T Consensus 17 ~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~----------~~~~~vd~~~~-----------------------~~~ 63 (105)
T d1nw2a_ 17 DKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK----------VTVAKLNVDEN-----------------------PET 63 (105)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------CEEEEEETTTC-----------------------HHH
T ss_pred CCcEEEEEECCCCCCcccccchhhhhhhhcCCc----------eEEEEEECCCC-----------------------ccc
Confidence 589999999999999999999999999998754 78888888765 688
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||++++ ++|+.+.+.
T Consensus 64 ~~~~~V~~~Pt~~~~-~~G~~~~~~ 87 (105)
T d1nw2a_ 64 TSQFGIMSIPTLILF-KGGEPVKQL 87 (105)
T ss_dssp HHHTTCCBSSEEEEE-ETTEEEEEE
T ss_pred HHHCCcceeeEEEEE-ECCEEEEEE
Confidence 999999999999999 789988774
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.56 E-value=5.3e-15 Score=131.65 Aligned_cols=118 Identities=16% Similarity=0.289 Sum_probs=93.3
Q ss_pred ccccccCCeEEecCCCCEEecccc---CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--hH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDL---EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--LN 80 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~---~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~--~~ 80 (399)
++|..||+|++.+.+|+ +.++++ +||+++|+|| +.|||+|..+++.|++++++|++.| ++|++||+|.. ..
T Consensus 2 lIGd~aPdF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds~~sh~ 78 (237)
T d2zcta1 2 LIGERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHI 78 (237)
T ss_dssp CTTSBCCCEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHH
T ss_pred CCCCCCCCeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCcHHHHH
Confidence 47999999999999995 666664 8999999999 9999999999999999999999987 99999999963 23
Q ss_pred HHHHhHhcC--CCcccc-cCChHHHHHHHhhcCC-------CCcCeEEEEcCCCCCCCeeec
Q 015833 81 AFNNYRACM--PWLAVP-YSDLETKKALNRKFDI-------EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 81 ~~~~~~~~~--~~~~~~-~~d~~~~~~l~~~~~v-------~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+.+..+.. ..+.+| .+|. ..++++.||+ ...|+++|||+ +|+|...
T Consensus 79 ~w~~~~~~~~~~~l~fpllsD~--~~~vak~yGv~~~~~~~~~~RatFIIDp---dG~Ir~~ 135 (237)
T d2zcta1 79 KWKEWIERHIGVRIPFPIIADP--QGTVARRLGLLHAESATHTVRGVFIVDA---RGVIRTM 135 (237)
T ss_dssp HHHHHHHHHHCCCCCSCEEECG--GGHHHHHTTCC----CCTTCCEEEEECT---TSBEEEE
T ss_pred HHhhhhhhhcccccccccccCc--chHHHHHcCCccccccccceeeeEEECC---CCEEEEE
Confidence 444433321 122222 2243 3899999998 46899999999 9998754
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.5e-14 Score=124.08 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=87.0
Q ss_pred CCCccc-CCC-CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-----
Q 015833 177 DRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----- 249 (399)
Q Consensus 177 ~p~f~l-~~~-g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~----- 249 (399)
..||++ +.+ |+ .++|++++||+|||.|||+||++|.+..+.|++++++|+++ +++|++++++.
T Consensus 3 iydf~~~~l~~g~-~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~---------g~~Il~fP~nqF~~qE 72 (184)
T d2f8aa1 3 VYAFSARPLAGGE-PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR---------GLVVLGFPCNQFGHQE 72 (184)
T ss_dssp GGGCEECBTTCSS-CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCSTTTT
T ss_pred eeeeEEEECCCCC-EecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhccc---------ceeEEEeecccccccc
Confidence 467888 776 67 89999999999999999999999999999999999999987 89999999863
Q ss_pred --CHHHHHHHHhcC----C-CcccccCC------chhHH----HHHh--------CCCCccc-----------------e
Q 015833 250 --DQTSFESYFGTM----P-WLALPFGD------PTIKE----LTKY--------FDVQGIP-----------------C 287 (399)
Q Consensus 250 --~~~~~~~~~~~~----~-~~~~p~~~------d~~~~----~~~~--------~~v~~~P-----------------~ 287 (399)
+.++++++++.. . ...||+.. +.... +.+. .++.+.| +
T Consensus 73 ~~~~~ei~~f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFt 152 (184)
T d2f8aa1 73 NAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFE 152 (184)
T ss_dssp CSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTC
T ss_pred ccchhhhhhhhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEE
Confidence 456777777521 1 13454422 11112 2222 2233444 7
Q ss_pred EEEECCCCcEEecccc
Q 015833 288 LVIIGPEGKTVTKQGR 303 (399)
Q Consensus 288 ~~lid~~G~i~~~~~~ 303 (399)
-||||++|+++.+.+.
T Consensus 153 KFLIdr~G~vv~rf~~ 168 (184)
T d2f8aa1 153 KFLVGPDGVPLRRYSR 168 (184)
T ss_dssp EEEECTTSCEEEEECT
T ss_pred EEEECCCCCEEEEECC
Confidence 7999999999988643
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.1e-14 Score=120.26 Aligned_cols=118 Identities=19% Similarity=0.380 Sum_probs=89.1
Q ss_pred Cccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHHH
Q 015833 179 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTS 253 (399)
Q Consensus 179 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~~ 253 (399)
||+| |.+|+ ++++++++||++||+||++||+ .|....+.+.++++++... .....+.++.++.+. ..+.
T Consensus 2 dF~L~d~~G~-~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 75 (160)
T d1wp0a1 2 PFSLTTHTGE-RKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSI-----TTLPDLTPLFISIDPERDTKEA 75 (160)
T ss_dssp CCEEEETTSC-EEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHC-----TTSCCEEEEEEESCTTTCCHHH
T ss_pred CeEEEcCCCC-EEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcc-----cccccccccccccCCCcccHHH
Confidence 6999 99999 9999999999999999999997 7999999999999988754 112456777777753 3444
Q ss_pred HHHHHhc--CCCcccccCCchhHHHHHhCCCCcc---------------ceEEEECCCCcEEeccc
Q 015833 254 FESYFGT--MPWLALPFGDPTIKELTKYFDVQGI---------------PCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 254 ~~~~~~~--~~~~~~p~~~d~~~~~~~~~~v~~~---------------P~~~lid~~G~i~~~~~ 302 (399)
...+... .+|..++........+.+.|++... ++++|||++|+|+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~ 141 (160)
T d1wp0a1 76 IANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG 141 (160)
T ss_dssp HHHHHHTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEE
T ss_pred HHHHHhhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEEC
Confidence 5555554 3355555454455677788876433 57899999999998753
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.55 E-value=8.7e-15 Score=114.73 Aligned_cols=71 Identities=24% Similarity=0.476 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|+|+|+|||+||++|+.+.|.+.++.+++.. ++.++.|++|.. ..+
T Consensus 19 ~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~d~~-----------------------~~l 65 (107)
T d1dbya_ 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD----------KLKCVKLNTDES-----------------------PNV 65 (107)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HHH
T ss_pred CCcEEEEEECCCCCCccccChHHHHHHHhhcc----------cceEEEEecccc-----------------------hhH
Confidence 58999999999999999999999999888765 478888888865 679
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|+++||++++ ++|+.+.+.
T Consensus 66 ~~~~~V~~~Pt~~~~-~~G~~v~~~ 89 (107)
T d1dbya_ 66 ASEYGIRSIPTIMVF-KGGKKCETI 89 (107)
T ss_dssp HHHHTCCSSCEEEEE-SSSSEEEEE
T ss_pred HHHhcccceEEEEEE-ECCeEEEEE
Confidence 999999999999999 689998874
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=1.4e-14 Score=113.65 Aligned_cols=71 Identities=23% Similarity=0.514 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+|||+||++|+.+.|.+.++++++.. ++.++.|.+|.+ ..+
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~----------~~~~~~vd~d~~-----------------------~~l 66 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PGT 66 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------TTH
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhhc----------ceeeeeccccch-----------------------hhH
Confidence 58999999999999999999999999887754 478888888755 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||++++ ++|+.+.+.
T Consensus 67 ~~~~~v~~~PT~~~~-~~G~~v~~~ 90 (108)
T d2trxa_ 67 APKYGIRGIPTLLLF-KNGEVAATK 90 (108)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHhCCCcEEEEEEE-ECCEEEEEE
Confidence 999999999999999 799998874
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.53 E-value=1.5e-14 Score=112.67 Aligned_cols=71 Identities=20% Similarity=0.435 Sum_probs=62.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+|||+||++|+.+.|.+.++.+++.++ +.++.|++|.+ ..+
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~----------~~~~~v~~d~~-----------------------~~l 63 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK----------IAVYKLNTDEA-----------------------PGI 63 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HHH
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc----------cceeEEecccc-----------------------hhh
Confidence 478999999999999999999999999988654 67888888765 689
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|+++||++++ ++|+.+.+.
T Consensus 64 ~~~~~V~~~Pt~~~~-~~G~~v~~~ 87 (104)
T d1fb6a_ 64 ATQYNIRSIPTVLFF-KNGERKESI 87 (104)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred hhhcceeeeeEEEEE-EcCeEEEEE
Confidence 999999999999999 799998874
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=9.9e-15 Score=114.02 Aligned_cols=70 Identities=26% Similarity=0.464 Sum_probs=60.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|+|+|+|||+||++|+.+.|.|.++.+++. ++.++.|.+|.. ..+
T Consensus 20 ~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-----------~~~~~~vd~d~~-----------------------~~~ 65 (105)
T d2ifqa1 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC-----------------------QDV 65 (105)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HHH
T ss_pred CCEEEEEEEcCCccchhhhhhhhhhhccccc-----------cceeeecccccC-----------------------HhH
Confidence 5789999999999999999999999988765 345677777655 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|+++||++++ ++|+.+.+.
T Consensus 66 ~~~~~V~~~Pt~~~~-~~G~~v~~~ 89 (105)
T d2ifqa1 66 ASECEVKCMPTFQFF-KKGQKVGEF 89 (105)
T ss_dssp HHHTTCCBSSEEEEE-ETTEEEEEE
T ss_pred HHHcCceEEEEEEEE-ECCEEEEEE
Confidence 999999999999999 899999884
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.53 E-value=1.1e-14 Score=115.02 Aligned_cols=72 Identities=17% Similarity=0.365 Sum_probs=63.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|+|+|+||++||++|+.+.|.|+++.+++.++ +.++.|++|.. ..
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~----------v~~~~vd~d~~-----------------------~~ 69 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK----------VIFLKVDVDAV-----------------------AA 69 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------SEEEEEETTTT-----------------------HH
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce----------EEEEEeecccc-----------------------cc
Confidence 3688999999999999999999999999988643 77888887755 68
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|+++||++++ ++|+.+.+.
T Consensus 70 l~~~~~v~~~Pt~~~~-~~G~~v~~~ 94 (112)
T d1ep7a_ 70 VAEAAGITAMPTFHVY-KDGVKADDL 94 (112)
T ss_dssp HHHHHTCCBSSEEEEE-ETTEEEEEE
T ss_pred ccccccccCCCEEEEE-ECCEEEEEE
Confidence 9999999999999999 899998874
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.53 E-value=1.7e-14 Score=114.39 Aligned_cols=70 Identities=27% Similarity=0.521 Sum_probs=61.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+|||+||++|+.+.|.|.++.+.+. ++.++.|..|.. ..+
T Consensus 28 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~l 73 (114)
T d1xfla_ 28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----------NVLFLKVDTDEL-----------------------KSV 73 (114)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTS-----------------------HHH
T ss_pred CCeEEEEEEcCCCCCccccccchhhhccccc-----------ccceeEEEeeec-----------------------eee
Confidence 6899999999999999999999999987764 466777776654 788
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|+++||++++ ++|+.+.+.
T Consensus 74 ~~~~~V~~~Pt~~~~-~~G~~v~~~ 97 (114)
T d1xfla_ 74 ASDWAIQAMPTFMFL-KEGKILDKV 97 (114)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred ccccceeeeEEEEEE-ECCEEEEEE
Confidence 999999999999999 899999874
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.53 E-value=4.2e-15 Score=127.88 Aligned_cols=118 Identities=23% Similarity=0.293 Sum_probs=93.0
Q ss_pred ccccccCCeEEec-CCC--CEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 7 YVQQLRRRMTSTK-EIG--EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d-~~G--~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.+|..+|+|+++. .+| ++++|++++||+++|+|| +.|||.|..+++.|++.+++|++.+ +++++||.|.. .+.
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS~Ds~-~sh 78 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDTH-FTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCH-HHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEeccccCH-HHH
Confidence 4789999999875 344 478999999999999999 9999999999999999999999886 99999999853 444
Q ss_pred HHhHhcCC---Ccccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 83 NNYRACMP---WLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 83 ~~~~~~~~---~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
+++.++.. .+.+| .+|. ..++++.||+. ..|.+++||+ +|.|...
T Consensus 79 ~~f~~~~~~~~~~~fpllsD~--~~~v~~~yGv~~~~~g~~~r~tfiID~---~G~Ir~~ 133 (186)
T d1n8ja_ 79 KAWHSSSETIAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDP---QGIIQAI 133 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECT--TSHHHHHTTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred HHHhccccccccccccccccH--HHHHHHHhCCCcccCCcceeeEEEECc---hheEEEE
Confidence 44444332 12222 2243 38999999983 4688999999 9998765
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.52 E-value=1.6e-14 Score=114.34 Aligned_cols=70 Identities=21% Similarity=0.414 Sum_probs=62.4
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+|||+||++|+.+.|.|.++.+++. ++.++.|++|.. .++
T Consensus 26 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~~l 71 (113)
T d1r26a_ 26 DILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----------TVKFAKVDADNN-----------------------SEI 71 (113)
T ss_dssp SSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HHH
T ss_pred CCeEEEEEECCCCccchhhceeccccccccc-----------cccccccccccc-----------------------hhh
Confidence 5789999999999999999999999998764 578888888755 679
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||++++ ++|+.+.+.
T Consensus 72 ~~~~~V~~~Pt~~~~-~~G~~v~~~ 95 (113)
T d1r26a_ 72 VSKCRVLQLPTFIIA-RSGKMLGHV 95 (113)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHccccCCCEEEEE-ECCEEEEEE
Confidence 999999999999999 899999874
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.52 E-value=2.5e-14 Score=112.22 Aligned_cols=71 Identities=24% Similarity=0.504 Sum_probs=62.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++.+++.+. +.++.|++|.+ ..+
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~----------~~~~~vd~d~~-----------------------~~l 66 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR----------LKVVKLEIDPN-----------------------PTT 66 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT----------CEEEEEESTTC-----------------------HHH
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc----------ceeceeccccc-----------------------HHH
Confidence 478999999999999999999999999888653 78888888865 689
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|+++||++++ ++|+.+.+.
T Consensus 67 ~~~~~I~~~Pt~~~~-~~g~~v~~~ 90 (108)
T d1thxa_ 67 VKKYKVEGVPALRLV-KGEQILDST 90 (108)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred HHHhcccCCCEEEEE-ECCEEEEEE
Confidence 999999999999999 689988774
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.52 E-value=1.7e-14 Score=114.22 Aligned_cols=71 Identities=25% Similarity=0.557 Sum_probs=61.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|+|+|+||++||++|+.+.|.|.++.+++. ++.++.|.+|.. ..+
T Consensus 26 ~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~d~~-----------------------~~l 71 (113)
T d1ti3a_ 26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----------NVTFLKVDVDEL-----------------------KAV 71 (113)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTC-----------------------HHH
T ss_pred CCEEEEEEEcCccccchhhhhhhhhhhccCC-----------CceEEeeeeecc-----------------------ccc
Confidence 6899999999999999999999999888764 467877777755 679
Q ss_pred HHhCCCCccceEEEECCCCcEEeccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++.|+|+++||++++ ++|+.+.+..
T Consensus 72 ~~~~~I~~~Pt~~~~-k~G~~v~~~~ 96 (113)
T d1ti3a_ 72 AEEWNVEAMPTFIFL-KDGKLVDKTV 96 (113)
T ss_dssp HHHHHCSSTTEEEEE-ETTEEEEEEE
T ss_pred cccCeecccceEEEE-ECCEEEEEEc
Confidence 999999999999999 7999998843
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.8e-14 Score=112.89 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=61.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|.++|+|||+||++|+.+.|.|.++.+++. ++.++.|++|.. ..+
T Consensus 21 ~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-----------~~~f~~vd~d~~-----------------------~~l 66 (107)
T d1gh2a_ 21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----------QAVFLEVDVHQC-----------------------QGT 66 (107)
T ss_dssp TSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HHH
T ss_pred CCEEEEEEECCCCCCccccchhhhccccccc-----------cccccccccccc-----------------------hhh
Confidence 6789999999999999999999999998765 466777777754 788
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||++++ ++|+.+.+.
T Consensus 67 ~~~~~v~~~Pt~~~~-~~G~~v~~~ 90 (107)
T d1gh2a_ 67 AATNNISATPTFQFF-RNKVRIDQY 90 (107)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred hhhcCceeceEEEEE-ECCEEEEEE
Confidence 999999999999999 899999884
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9e-14 Score=116.26 Aligned_cols=116 Identities=18% Similarity=0.285 Sum_probs=87.4
Q ss_pred CCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcCC--CcEEEEEEecCC---ChHHHHHhH
Q 015833 13 RRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNG--SDFEVVFVSSDE---DLNAFNNYR 86 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~--~~~~ii~Vs~D~---~~~~~~~~~ 86 (399)
.||+|+|++|+++++++++||++||+||++||+ .|...++.+.++++.+...+ ..+.++.++.+. ..+...++.
T Consensus 1 gdF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1wp0a1 1 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYV 80 (160)
T ss_dssp CCCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHH
T ss_pred CCeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHH
Confidence 379999999999999999999999999999998 89999999999999987654 345666777653 344555555
Q ss_pred hcC--CCcccccCChHHHHHHHhhcCC---------------CCcCeEEEEcCCCCCCCeeec
Q 015833 87 ACM--PWLAVPYSDLETKKALNRKFDI---------------EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 87 ~~~--~~~~~~~~d~~~~~~l~~~~~v---------------~~~P~~~lid~~~~~G~i~~~ 132 (399)
... +|..+.. +......+.+.|++ .+.++++|||+ +|+++..
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~---~G~i~~~ 139 (160)
T d1wp0a1 81 KEFSPKLVGLTG-TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP---DGEFLDY 139 (160)
T ss_dssp HTTCTTCEEEEC-CHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECT---TSCEEEE
T ss_pred hhcCCCcccccC-chHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECC---CCcEEEE
Confidence 543 3544443 33333566666664 34578899999 9999865
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.50 E-value=4.3e-14 Score=120.08 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=90.8
Q ss_pred ccCCeEEe----cCCCCEEeccccCC-CEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 11 LRRRMTST----KEIGEEVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 11 ~~p~f~l~----d~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
.||+|+|+ |.+|++++|++++| |+++|+|| +.|||.|.++++.+++.+++|++.| ++||+||.|.. .+.++
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D~~-~~~~~ 77 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDSK-FTHLA 77 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSCH-HHHHH
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCCcH-HHHHh
Confidence 48999998 56777999999998 78999999 9999999999999999999999987 99999999854 33455
Q ss_pred hHhcCC-------CcccccCChHHHHHHHhhcCCC-----CcCeEEEEcCCCCCCCeeecc
Q 015833 85 YRACMP-------WLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~~~~-------~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.++.. ..+...+|. ...+.+.|++. ..+++++||+ +|.|....
T Consensus 78 ~~~~~~~~~~~~~~~f~llsD~--~~~~~~~ygv~~~~~~~~R~tfiId~---~G~I~~~~ 133 (170)
T d2h01a1 78 WKKTPLSQGGIGNIKHTLISDI--SKSIARSYDVLFNESVALRAFVLIDK---QGVVQHLL 133 (170)
T ss_dssp HHTSCGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTEECCEEEEECT---TSBEEEEE
T ss_pred HhhhhhhhccccccCCceeEcC--ccHHHHHhCCccccccceeeeEEEcC---CCeEEEEE
Confidence 554422 111112233 37899999883 4589999999 99998653
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.7e-14 Score=125.10 Aligned_cols=121 Identities=14% Similarity=0.251 Sum_probs=93.8
Q ss_pred cccccccCCeEEecCCCCEEeccccCC-CEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NA 81 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~--~~ 81 (399)
+.+|..||+|++++.+|+ ++|+++.| |+++|+|| +.|||.|.+++..+++.+++|++.| +++++||.|... ..
T Consensus 1 L~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds~~sh~~ 77 (220)
T d1prxa_ 1 LLLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVEDHLA 77 (220)
T ss_dssp CCTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHH
T ss_pred CCCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeeccccccccchhh
Confidence 368999999999999996 99999976 79999999 8999999999999999999999987 999999998642 33
Q ss_pred HHHhHhc----CCCcccccC-ChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCeeec
Q 015833 82 FNNYRAC----MPWLAVPYS-DLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 82 ~~~~~~~----~~~~~~~~~-d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~~~ 132 (399)
+.+.... ..-..++|. ..+...++++.||+. ..+.++|||+ +|.|...
T Consensus 78 ~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~---~g~Ir~~ 142 (220)
T d1prxa_ 78 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGP---DKKLKLS 142 (220)
T ss_dssp HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT---TSBEEEE
T ss_pred hhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcC---ccceeEE
Confidence 3333321 111112221 222348999999984 4588999999 9999765
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.48 E-value=4.1e-14 Score=111.72 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=61.5
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+||++||++|+.+.|.|.++.+++. ++.++.|.+|.. ..++
T Consensus 25 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-----------~v~~~~vd~~~~----------------------~~~l 71 (112)
T d1f9ma_ 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------NKTL 71 (112)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------THHH
T ss_pred CCEEEEEEEcCCCcchHHHHHHHhhhccccc-----------cceeeccccccc----------------------chhh
Confidence 4789999999999999999999999998875 456777776643 3789
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|+++||++++ ++|+++.+.
T Consensus 72 ~~~~~V~~~Pt~~~~-k~G~~v~~~ 95 (112)
T d1f9ma_ 72 AKELGIRVVPTFKIL-KENSVVGEV 95 (112)
T ss_dssp HHHHCCSSSSEEEEE-ETTEEEEEE
T ss_pred HhheeeccCCEEEEE-ECCEEEEEE
Confidence 999999999999999 899999884
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.48 E-value=1.7e-13 Score=107.12 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=59.9
Q ss_pred ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 194 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 194 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
...+++++++||++||++|+.+.|.+.+++.+..... ...+.++.|+.+..
T Consensus 12 ~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~------~~~v~~~~id~~~~----------------------- 62 (107)
T d1a8la2 12 NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAG------KGKILGDMVEAIEY----------------------- 62 (107)
T ss_dssp TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTT------CCCEEEEEEEGGGC-----------------------
T ss_pred hcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhcc------CCcEEEEEeccccc-----------------------
Confidence 3445667888999999999999999999987754321 23456666665533
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++++|+|.++||++++ ++|+.+.+.
T Consensus 63 ~~l~~~~~V~~vPTi~i~-~~G~~~~~~ 89 (107)
T d1a8la2 63 PEWADQYNVMAVPKIVIQ-VNGEDRVEF 89 (107)
T ss_dssp HHHHHHTTCCSSCEEEEE-ETTEEEEEE
T ss_pred cccccccccccceEEEEE-eCCeEEEEE
Confidence 689999999999998766 899988773
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.47 E-value=1.5e-14 Score=114.19 Aligned_cols=87 Identities=22% Similarity=0.406 Sum_probs=68.3
Q ss_pred eEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCccc
Q 015833 15 MTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAV 94 (399)
Q Consensus 15 f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~ 94 (399)
+.+.|.+.-.-.+.+..||+|+|+|||+||++|+.+.|.++++++++++. +.++.|+.|..
T Consensus 8 ~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~---------------- 68 (111)
T d1xwaa_ 8 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC---------------- 68 (111)
T ss_dssp EECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC----------------
T ss_pred EEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecC----------------
Confidence 34444333222355568999999999999999999999999999998754 77787866533
Q ss_pred ccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 95 PYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 95 ~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
..++++|+|.++|+++++. +|+.+.+
T Consensus 69 --------~~l~~~~~V~~~Pt~~~~~----~G~~v~~ 94 (111)
T d1xwaa_ 69 --------EDIAMEYNISSMPTFVFLK----NGVKVEE 94 (111)
T ss_dssp --------HHHHHHTTCCSSSEEEEEE----TTEEEEE
T ss_pred --------cchhhcCCCccccEEEEEE----CCEEEEE
Confidence 6788999999999999995 8887754
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.46 E-value=1.2e-14 Score=108.35 Aligned_cols=80 Identities=34% Similarity=0.686 Sum_probs=73.3
Q ss_pred cccCCCCChHHHHHHHHHHHHHhccCCCccccccc-ccceeeeecCCCCCCeecCCCCCCCCceeEEcCCCCCCCcCccc
Q 015833 310 QENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCV 388 (399)
Q Consensus 310 g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~C~~~~~~w~~~c~~c~~~~~~~~~ 388 (399)
|+++||+++++..++..++.+.-..+|..+.+..| .|.+.+.. ...++|+.|.+.+.+|.|+|..|+|+||..||
T Consensus 1 ~~~~~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~----~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA 76 (89)
T d1v5na_ 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGTIWSYHCDECDFDLHAKCA 76 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEEC----CSSCCCTTTSCCCCSCEEECTTTCCCCCHHHH
T ss_pred CCccCCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEec----CCCCEeCCCCCCcCCcEeEeccCCCEecHHHc
Confidence 67889999999999999999999999999999999 58887743 45689999999999999999999999999999
Q ss_pred cccCC
Q 015833 389 RAVDR 393 (399)
Q Consensus 389 ~~~~~ 393 (399)
+.+++
T Consensus 77 ~~P~~ 81 (89)
T d1v5na_ 77 LNEDT 81 (89)
T ss_dssp HCSSC
T ss_pred CCCcc
Confidence 98876
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.46 E-value=7.7e-14 Score=108.43 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=61.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++.+++. +..++.|++|.. .++
T Consensus 18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-----------~~~~~~vd~d~~-----------------------~~~ 63 (103)
T d1syra_ 18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----------KMVFIKVDVDEV-----------------------SEV 63 (103)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTT-----------------------HHH
T ss_pred CCcEEEEEeCCcccCcccccccchhhhhccc-----------ceEEEeeccccC-----------------------cce
Confidence 5789999999999999999999999998875 356777777755 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||++++ ++|+.+.+.
T Consensus 64 ~~~~~V~~~Pt~i~~-k~G~~v~~~ 87 (103)
T d1syra_ 64 TEKENITSMPTFKVY-KNGSSVDTL 87 (103)
T ss_dssp HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred eeeeeeecceEEEEE-ECCEEEEEE
Confidence 999999999999999 899999874
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=7.1e-14 Score=111.17 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=61.2
Q ss_pred ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 192 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 192 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
+++.+||+|+|+|||+||++|+.+.|.+....+..... .++.++.+.++.+. +
T Consensus 17 l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~-------------------~ 69 (117)
T d2fwha1 17 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL--------ADTVLLQANVTAND-------------------A 69 (117)
T ss_dssp HHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT--------TTSEEEEEECTTCC-------------------H
T ss_pred HHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc--------cceEEEecccccch-------------------h
Confidence 44556899999999999999999999875443333221 24566666654332 2
Q ss_pred hhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
....+++.|+|.++||++++|++|+++..
T Consensus 70 ~~~~l~~~~~v~~~Pt~~~~~~~G~~~~~ 98 (117)
T d2fwha1 70 QDVALLKHLNVLGLPTILFFDGQGQEHPQ 98 (117)
T ss_dssp HHHHHHHHTTCCSSSEEEEECTTSCBCGG
T ss_pred HHHHHHhhhehhhceEEEEEeCCCcEEec
Confidence 24788999999999999999999998753
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=9.6e-13 Score=110.32 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHH
Q 015833 178 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQT 252 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~ 252 (399)
+||+| |.+|+ ++++++++||++||+||.+||+ .|......+..+...+.... ...+.++.++.+. ..+
T Consensus 7 ~dF~l~d~~G~-~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 79 (169)
T d2b7ka1 7 GPFHLEDMYGN-EFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY------GITLQPLFITCDPARDSPA 79 (169)
T ss_dssp CCCEEEETTSC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH------CCCCEEEEEESCTTTCCHH
T ss_pred CCeEEEeCCCC-EECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccc------cccceeeeeccccccCchh
Confidence 68999 99999 9999999999999999999996 57777777777766665431 2356677777653 233
Q ss_pred HHHHHHhcC--CCcccccCCchhHHHHH----------------hCCCCccceEEEECCCCcEEeccc
Q 015833 253 SFESYFGTM--PWLALPFGDPTIKELTK----------------YFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 253 ~~~~~~~~~--~~~~~p~~~d~~~~~~~----------------~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
....+.... .|.......+....... .|.+...|++||||++|+++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~ 147 (169)
T d2b7ka1 80 VLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALG 147 (169)
T ss_dssp HHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEEC
T ss_pred hhhhhhccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEEC
Confidence 334433322 23222222222223333 345667899999999999998754
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.8e-13 Score=109.72 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=62.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|+|+|.|||+||++|+.+.|.|.++.++|.+. +.++.|++|.. .++
T Consensus 22 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~----------v~~~~VDvd~~-----------------------~~l 68 (137)
T d1qgva_ 22 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF----------AVIYLVDITEV-----------------------PDF 68 (137)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTC-----------------------CTT
T ss_pred CCEEEEEEECCCCccchhcChHHHHHHHHhhcc----------ceEEEeecccc-----------------------chh
Confidence 579999999999999999999999999999754 77888888755 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|+++||++++ ++|+.+...
T Consensus 69 a~~~~I~~~PT~~~f-~~g~~i~~~ 92 (137)
T d1qgva_ 69 NKMYELYDPCTVMFF-FRNKHIMID 92 (137)
T ss_dssp TTSSCSCSSCEEEEE-ETTEEEEEE
T ss_pred hhhcCeeeEEEEEEE-eCCcEEEEE
Confidence 999999999999999 888877543
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.40 E-value=3.6e-13 Score=104.88 Aligned_cols=71 Identities=24% Similarity=0.421 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+|||+||++|+.+.|.+.++++++++. +.++.|+.|.. ..++++|+
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 68 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN------------------------PETTSQFG 68 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCC------------------------cccHHHCC
Confidence 4689999999999999999999999999999764 88888877644 78899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+.+.+
T Consensus 69 V~~~Pt~~~~~----~G~~~~~ 86 (105)
T d1nw2a_ 69 IMSIPTLILFK----GGEPVKQ 86 (105)
T ss_dssp CCBSSEEEEEE----TTEEEEE
T ss_pred cceeeEEEEEE----CCEEEEE
Confidence 99999999996 7877654
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.40 E-value=3.5e-13 Score=105.33 Aligned_cols=71 Identities=20% Similarity=0.413 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+|+|+|||+||++|+.+.|.+.++++++.+. +.++.|++|.. ..++++|+
T Consensus 18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~ 70 (107)
T d1dbya_ 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES------------------------PNVASEYG 70 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHHT
T ss_pred CCCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccc------------------------hhHHHHhc
Confidence 4689999999999999999999999998887654 77888877644 77899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+.+.+
T Consensus 71 V~~~Pt~~~~~----~G~~v~~ 88 (107)
T d1dbya_ 71 IRSIPTIMVFK----GGKKCET 88 (107)
T ss_dssp CCSSCEEEEES----SSSEEEE
T ss_pred ccceEEEEEEE----CCeEEEE
Confidence 99999999996 7887755
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=9.2e-14 Score=110.86 Aligned_cols=82 Identities=21% Similarity=0.419 Sum_probs=63.9
Q ss_pred cccCCcEEEEEEecC-------CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 015833 193 SSLVGKTVGLYFSAR-------WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 265 (399)
Q Consensus 193 ~~~~gk~vll~F~a~-------wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 265 (399)
++.+||+|+|+|||+ ||++|+.+.|.+.++++.+.+ ++.++.|++|... .+
T Consensus 17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~----------~~~~~~vdv~~~~-~~----------- 74 (119)
T d1woua_ 17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE----------GCVFIYCQVGEKP-YW----------- 74 (119)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT----------TEEEEEEECCCHH-HH-----------
T ss_pred HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC----------ceEEEEEECCCCc-cc-----------
Confidence 345689999999995 999999999999999887754 4889999987432 11
Q ss_pred cccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 266 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 266 ~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.|.+..+++.|+|.++||+++++..++++..
T Consensus 75 ----~d~~~~l~~~~~V~~iPT~i~~~~g~~l~~~ 105 (119)
T d1woua_ 75 ----KDPNNDFRKNLKVTAVPTLLKYGTPQKLVES 105 (119)
T ss_dssp ----HCTTCHHHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred ----chhhhhHHHhCCeEEEEEEEEEECCeEEeee
Confidence 1224778999999999999999655555543
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=5.1e-14 Score=114.29 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=72.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|.|||+|||+|+.+.|.|.++.++|.+. .+.++.|.+|. +.++
T Consensus 36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~---------~~~~a~Vd~d~-----------------------~~~l 83 (132)
T d2hfda1 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQ-----------------------SEAI 83 (132)
T ss_dssp EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS---------CEEEEEECHHH-----------------------HHHH
T ss_pred CcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC---------cceeEEEEecC-----------------------CHHH
Confidence 478999999999999999999999999998754 45566665552 3889
Q ss_pred HHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCC
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP 336 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~ 336 (399)
++.|+|.++||++++ ++|+.+.+..| .. + .++|...|+.++...+
T Consensus 84 a~~~~V~~~PT~~~~-~~G~~v~~~~G-------~~----~---~~~l~~~i~~ll~~~~ 128 (132)
T d2hfda1 84 GDRFGVFRFPATLVF-TGGNYRGVLNG-------IH----P---WAELINLMRGLVEPQQ 128 (132)
T ss_dssp HHHHTCCSCCEEEEE-ETTEEEEEECC-------CS----C---HHHHHHHHHHHHSCSS
T ss_pred HHhhccCcceeEEEE-EcCcEeeeecC-------CC----C---HHHHHHHHHHHhCccc
Confidence 999999999999999 99999987433 22 2 3566666666665443
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=1e-13 Score=103.72 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|+.+++|||+||++|+.+.|.+.++.+.+.. .+.++.+..|.. .++
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~~~~d~~-----------------------~~l 48 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD----------AVEVEYINVMEN-----------------------PQK 48 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS----------SEEEEEEESSSS-----------------------CCT
T ss_pred CceEEEEEECCCCcChHhhhhhcccccccccc----------cccccccccccc-----------------------ccc
Confidence 57889999999999999999999999887754 366777766644 567
Q ss_pred HHhCCCCccceEEEECCCCcE
Q 015833 277 TKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i 297 (399)
+++|+|.++||+++ +++|++
T Consensus 49 a~~~~V~~~Pt~~i-~~~g~~ 68 (85)
T d1fo5a_ 49 AMEYGIMAVPTIVI-NGDVEF 68 (85)
T ss_dssp TTSTTTCCSSEEEE-TTEEEC
T ss_pred cccCCceEeeEEEE-ECCcEE
Confidence 89999999999765 577764
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.38 E-value=1.4e-13 Score=109.71 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=54.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
..++|+|.||++|||+|+.+.|.|.++.++|.+. ++.++.|++| . ..+
T Consensus 29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~---------~~~~~~Vd~d--~---------------------~~~ 76 (119)
T d2es7a1 29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF---------DWQVAVADLE--Q---------------------SEA 76 (119)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTCTTS---------CCEEEEECHH--H---------------------HHH
T ss_pred CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC---------ceEEEEEECC--C---------------------CHH
Confidence 3578999999999999999999999999998753 4556666554 2 378
Q ss_pred HHHhCCCCccceEEEECCCCcEEeccc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
+++.|+|+++||++++ ++|+.+.+..
T Consensus 77 l~~~~~V~~~Pt~~~~-~~G~~v~~~~ 102 (119)
T d2es7a1 77 IGDRFNVRRFPATLVF-TDGKLRGALS 102 (119)
T ss_dssp HHHTTTCCSSSEEEEE-SCC----CEE
T ss_pred HHHhcCcCcceEEEEE-EcCeEEEEee
Confidence 9999999999999999 8999998843
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.37 E-value=6.4e-13 Score=103.23 Aligned_cols=71 Identities=18% Similarity=0.397 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+|||+||++|+.+.|.+.++++++.+. +.++.|+.|.. ..++++|+
T Consensus 16 ~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~------------------------~~l~~~~~ 68 (104)
T d1fb6a_ 16 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA------------------------PGIATQYN 68 (104)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccc------------------------hhhhhhcc
Confidence 3679999999999999999999999999998765 67777766544 78899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++||++++. +|+.+.+
T Consensus 69 V~~~Pt~~~~~----~G~~v~~ 86 (104)
T d1fb6a_ 69 IRSIPTVLFFK----NGERKES 86 (104)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred eeeeeEEEEEE----cCeEEEE
Confidence 99999999985 8887755
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.37 E-value=7.4e-13 Score=103.61 Aligned_cols=70 Identities=20% Similarity=0.437 Sum_probs=61.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+|+++|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. ..++++|+|
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~I 72 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN------------------------PTTVKKYKV 72 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC------------------------HHHHHHTTC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceeccccc------------------------HHHHHHhcc
Confidence 589999999999999999999999999988754 78888877644 788999999
Q ss_pred CCcCeEEEEcCCCCCCCeeec
Q 015833 112 EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~ 132 (399)
+++|+++++. +|+.+.+
T Consensus 73 ~~~Pt~~~~~----~g~~v~~ 89 (108)
T d1thxa_ 73 EGVPALRLVK----GEQILDS 89 (108)
T ss_dssp CSSSEEEEEE----TTEEEEE
T ss_pred cCCCEEEEEE----CCEEEEE
Confidence 9999999997 7776654
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=5.9e-13 Score=104.18 Aligned_cols=71 Identities=21% Similarity=0.477 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+|+|+|||+||++|+.+.|.+.+++.++... +.++.|++|.. ..++++|+
T Consensus 19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~ 71 (108)
T d2trxa_ 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG 71 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------------TTHHHHTT
T ss_pred CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccch------------------------hhHHHHhC
Confidence 4689999999999999999999999998887543 88888877644 66889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++||++++. +|+.+.+
T Consensus 72 v~~~PT~~~~~----~G~~v~~ 89 (108)
T d2trxa_ 72 IRGIPTLLLFK----NGEVAAT 89 (108)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred CCcEEEEEEEE----CCEEEEE
Confidence 99999999986 7877754
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.36 E-value=5.3e-13 Score=117.13 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=91.4
Q ss_pred cccccccCCeEEecCCCC-EEecccc-CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--H
Q 015833 6 WYVQQLRRRMTSTKEIGE-EVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--N 80 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~-~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~--~ 80 (399)
..+|..||+|+++...|. .++|+++ +||+++|+|| +.|||.|.+++..+++.+++|++.| ++|++||.|... .
T Consensus 2 i~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~Ds~~sh~ 79 (219)
T d1xcca_ 2 YHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKESHD 79 (219)
T ss_dssp CCTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHH
T ss_pred CcCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecCccHhHHh
Confidence 468999999999976433 5899995 8999999999 9999999999999999999999987 999999998542 2
Q ss_pred HHHHhHh---c-CCCcccccCChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCeeec
Q 015833 81 AFNNYRA---C-MPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 81 ~~~~~~~---~-~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~~~ 132 (399)
.|.+..+ + .+..+...+|.+ .++++.||+. ....++|||+ +|+|...
T Consensus 80 ~w~~~~~~~~~~~~l~fpllsD~~--~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp---~g~Ir~~ 142 (219)
T d1xcca_ 80 KWIEDIKYYGKLNKWEIPIVCDES--RELANKLKIMDEQEKDITGLPLTCRCLFFISP---EKKIKAT 142 (219)
T ss_dssp HHHHHHHHHHTCSCCCCCEEECTT--SHHHHHHTCEEEEEECTTSCEEECEEEEEECT---TSBEEEE
T ss_pred HHhhhhHhhcccCCCCcccccccc--cHHHHHhCCcccccccCcccceeeeeeEEEcC---cceEEEE
Confidence 3333322 1 121111123443 8899999982 2369999999 9999754
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.2e-12 Score=110.36 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=65.1
Q ss_pred cCCeEEecCC-CCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHHHH
Q 015833 12 RRRMTSTKEI-GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAFN 83 (399)
Q Consensus 12 ~p~f~l~d~~-G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~~~~ 83 (399)
.-+|+++|++ |++++|++++||+|||.+||+||++|....+.|++++++|++.| ++|++++.++ +.++..
T Consensus 3 iydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nqF~~qE~~~~~ei~ 80 (184)
T d2f8aa1 3 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEIL 80 (184)
T ss_dssp GGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHHH
T ss_pred eeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccccccccccchhhhh
Confidence 4589999986 67899999999999999999999999999999999999999988 9999998763 445666
Q ss_pred HhHh
Q 015833 84 NYRA 87 (399)
Q Consensus 84 ~~~~ 87 (399)
++.+
T Consensus 81 ~f~~ 84 (184)
T d2f8aa1 81 NSLK 84 (184)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6654
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2e-13 Score=108.81 Aligned_cols=81 Identities=16% Similarity=0.375 Sum_probs=63.3
Q ss_pred ccccCCCEEEEEEecC-------CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCCh
Q 015833 27 VSDLEGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 99 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~ 99 (399)
+++.+||+|+|+|||+ ||++|++++|.+.++++.++++ +.++.|++|...+. .|.
T Consensus 16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~~---------------~d~ 77 (119)
T d1woua_ 16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPYW---------------KDP 77 (119)
T ss_dssp HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHHH---------------HCT
T ss_pred HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCccc---------------chh
Confidence 3456899999999995 9999999999999998887643 89999988753221 011
Q ss_pred HHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 100 ETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 100 ~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
...++++|+|.++||+++++. .+++.
T Consensus 78 --~~~l~~~~~V~~iPT~i~~~~---g~~l~ 103 (119)
T d1woua_ 78 --NNDFRKNLKVTAVPTLLKYGT---PQKLV 103 (119)
T ss_dssp --TCHHHHHHCCCSSSEEEETTS---SCEEE
T ss_pred --hhhHHHhCCeEEEEEEEEEEC---CeEEe
Confidence 266888999999999999985 44444
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=4.8e-13 Score=106.20 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=60.6
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+++.+||+|+|+|||+||++|+.+.|.+....+..+.. .++.++.+.++.+ .+....++
T Consensus 17 l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~--------------------~~~~~~l~ 75 (117)
T d2fwha1 17 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTAN--------------------DAQDVALL 75 (117)
T ss_dssp HHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTC--------------------CHHHHHHH
T ss_pred HHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc-cceEEEecccccc--------------------hhHHHHHH
Confidence 45668999999999999999999999885444433322 1355666655322 22337899
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCeee
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~~ 131 (399)
++|+|.++|+++++++ +|+++.
T Consensus 76 ~~~~v~~~Pt~~~~~~---~G~~~~ 97 (117)
T d2fwha1 76 KHLNVLGLPTILFFDG---QGQEHP 97 (117)
T ss_dssp HHTTCCSSSEEEEECT---TSCBCG
T ss_pred hhhehhhceEEEEEeC---CCcEEe
Confidence 9999999999999999 998764
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.34 E-value=8e-13 Score=104.16 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+|+|+||++||++|+.+.|.|.+++++++++ +.++.|++|+. ..++++|+
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~ 75 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAV------------------------AAVAEAAG 75 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTT------------------------HHHHHHHT
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeecccc------------------------cccccccc
Confidence 5799999999999999999999999999998653 78888877643 78899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++|+++++. +|+.+.+
T Consensus 76 v~~~Pt~~~~~----~G~~v~~ 93 (112)
T d1ep7a_ 76 ITAMPTFHVYK----DGVKADD 93 (112)
T ss_dssp CCBSSEEEEEE----TTEEEEE
T ss_pred ccCCCEEEEEE----CCEEEEE
Confidence 99999999986 8887755
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.5e-12 Score=106.02 Aligned_cols=70 Identities=19% Similarity=0.413 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+|+|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. .+++++|+
T Consensus 21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~------------------------~~la~~~~ 73 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV------------------------PDFNKMYE 73 (137)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC------------------------CTTTTSSC
T ss_pred CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeecccc------------------------chhhhhcC
Confidence 5789999999999999999999999999999764 88888877644 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeee
Q 015833 111 IEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~ 131 (399)
|.++|+++++. +|+.+.
T Consensus 74 I~~~PT~~~f~----~g~~i~ 90 (137)
T d1qgva_ 74 LYDPCTVMFFF----RNKHIM 90 (137)
T ss_dssp SCSSCEEEEEE----TTEEEE
T ss_pred eeeEEEEEEEe----CCcEEE
Confidence 99999999997 676653
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.33 E-value=7.5e-13 Score=98.90 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=51.8
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
.+..||++||++|+.+.|.++++.+++.+ ++.++.|++|.+ .+++++
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~----------~v~~~~vd~d~~-----------------------~~l~~~ 50 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD----------KIDVEKIDIMVD-----------------------REKAIE 50 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCS----------SCCEEEECTTTC-----------------------GGGGGG
T ss_pred EEEEEECCCCcchHHHHHHHhhhcccccc----------cccccccccccc-----------------------hhhHHh
Confidence 45669999999999999999999999864 477888887755 678999
Q ss_pred CCCCccceEEEECCCCc
Q 015833 280 FDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~ 296 (399)
|+|.++||+++ +.+|+
T Consensus 51 ~~V~~~Pt~~~-~~~~~ 66 (85)
T d1nhoa_ 51 YGLMAVPAIAI-NGVVR 66 (85)
T ss_dssp TCSSCSSEEEE-TTTEE
T ss_pred cCceEeCEEEE-CCcEE
Confidence 99999999765 45543
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=1.7e-12 Score=103.33 Aligned_cols=70 Identities=17% Similarity=0.399 Sum_probs=60.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.++.++|.||++||++|+.+.|.+.++.+.+.+. ++.++.|++|.. ..
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~---------~v~~~~vd~~~~-----------------------~~ 73 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK---------NITLAQIDCTEN-----------------------QD 73 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---------TCEEEEEETTTC-----------------------HH
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhccc---------ceeeeeeeccch-----------------------HH
Confidence 4589999999999999999999999999988643 588888888755 78
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++++|+|.++||++++ ++|+..
T Consensus 74 l~~~~~v~~~Pti~~f-~~g~~~ 95 (119)
T d2b5ea4 74 LCMEHNIPGFPSLKIF-KNSDVN 95 (119)
T ss_dssp HHHHTTCCSSSEEEEE-ETTCTT
T ss_pred HHHHhccccCCeEEEE-ECCEEe
Confidence 9999999999999999 777543
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.33 E-value=1.2e-12 Score=103.41 Aligned_cols=70 Identities=21% Similarity=0.520 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+|+|+|||+||++|+.+.|.|.++++++. ++.++.|+.|.. ..++++|+
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~------------------------~~l~~~~~ 76 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDEL------------------------KAVAEEWN 76 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTC------------------------HHHHHHHH
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCC----CceEEeeeeecc------------------------ccccccCe
Confidence 47899999999999999999999999998863 377777766533 77899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++|+++++. +|+.+.+
T Consensus 77 I~~~Pt~~~~k----~G~~v~~ 94 (113)
T d1ti3a_ 77 VEAMPTFIFLK----DGKLVDK 94 (113)
T ss_dssp CSSTTEEEEEE----TTEEEEE
T ss_pred ecccceEEEEE----CCEEEEE
Confidence 99999999996 8887755
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.33 E-value=1.7e-12 Score=102.64 Aligned_cols=70 Identities=20% Similarity=0.427 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+|||+||++|+.+.|.|.++++.++ ++.++.|+.|.. ..++++|+
T Consensus 27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~vd~~~~------------------------~~l~~~~~ 78 (114)
T d1xfla_ 27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDEL------------------------KSVASDWA 78 (114)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTS------------------------HHHHHHTT
T ss_pred cCCeEEEEEEcCCCCCccccccchhhhccccc----ccceeEEEeeec------------------------eeeccccc
Confidence 47899999999999999999999999988874 377777766533 78889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++|+++++. +|+.+.+
T Consensus 79 V~~~Pt~~~~~----~G~~v~~ 96 (114)
T d1xfla_ 79 IQAMPTFMFLK----EGKILDK 96 (114)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred eeeeEEEEEEE----CCEEEEE
Confidence 99999999995 8887755
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.3e-12 Score=101.59 Aligned_cols=70 Identities=19% Similarity=0.362 Sum_probs=59.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+|+|+|||+||++|+.+.|.|.++++.+.+ +.++.|+.|.. ..++++|+
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~------------------------~~~~~~~~ 70 (105)
T d2ifqa1 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC------------------------QDVASECE 70 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccC------------------------HhHHHHcC
Confidence 568999999999999999999999999888743 55677766533 77889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++||++++. +|+.+.+
T Consensus 71 V~~~Pt~~~~~----~G~~v~~ 88 (105)
T d2ifqa1 71 VKCMPTFQFFK----KGQKVGE 88 (105)
T ss_dssp CCBSSEEEEEE----TTEEEEE
T ss_pred ceEEEEEEEEE----CCEEEEE
Confidence 99999999995 8888765
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.31 E-value=2.6e-12 Score=101.65 Aligned_cols=77 Identities=16% Similarity=0.400 Sum_probs=60.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++.+++.. .+.+|.++...+. +..+.+
T Consensus 26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~------------~v~~v~~~~~~~~-----------------~~~~~~ 76 (115)
T d1zmaa1 26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKA------------HIYFINSEEPSQL-----------------NDLQAF 76 (115)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC------------CCEEEETTCGGGH-----------------HHHHHH
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh------------hhhhheeeccccc-----------------cccccc
Confidence 67899999999999999999999999887743 3667777643210 113578
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
++.|+|.++||++++ ++|+++.+..+
T Consensus 77 ~~~~~V~~~PTli~~-~~gk~~~~~~G 102 (115)
T d1zmaa1 77 RSRYGIPTVPGFVHI-TDGQINVRCDS 102 (115)
T ss_dssp HHHHTCCSSCEEEEE-ETTEEEEECCT
T ss_pred ccccccccccEEEEE-ECCEEEEEEcC
Confidence 899999999999999 79999887543
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=1e-11 Score=103.89 Aligned_cols=116 Identities=15% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcCC-CcEEEEEEecCC---ChHHHHHhHh
Q 015833 13 RRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---DLNAFNNYRA 87 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~-~~~~ii~Vs~D~---~~~~~~~~~~ 87 (399)
+||+|+|.+|+++++++++||++||.||++||+ .|......+..+...+...+ ..+.+..++.+. ..+....+..
T Consensus 7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T d2b7ka1 7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 86 (169)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence 799999999999999999999999999999998 67777777777776665422 235666666643 2333333333
Q ss_pred cC--CCcccccCChHHHHHHHh----------------hcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 88 CM--PWLAVPYSDLETKKALNR----------------KFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 88 ~~--~~~~~~~~d~~~~~~l~~----------------~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.. .|..... +......+.. .|.+.+.|+++|||+ +|+++..
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~---~G~vv~~ 145 (169)
T d2b7ka1 87 DFHPSILGLTG-TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP---EGQFVDA 145 (169)
T ss_dssp TSCTTCEEEEC-CHHHHHHHHHHTTC--------------CTTTCCCEEEECT---TSCEEEE
T ss_pred ccccccccccc-chhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECC---CCeEEEE
Confidence 22 2333332 2222122222 345778999999999 9999965
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.8e-12 Score=101.21 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=60.3
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
-.+|+++|+|||+||++|+.+.|.|.++++++.+ +.++.|++|+. ..++++|
T Consensus 19 ~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d~~------------------------~~l~~~~ 70 (107)
T d1gh2a_ 19 AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQC------------------------QGTAATN 70 (107)
T ss_dssp TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTS------------------------HHHHHHT
T ss_pred CCCCEEEEEEECCCCCCccccchhhhcccccccc----ccccccccccc------------------------hhhhhhc
Confidence 3578999999999999999999999999998742 67777766543 7888999
Q ss_pred CCCCcCeEEEEcCCCCCCCeeec
Q 015833 110 DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++|+++++. +|+.+.+
T Consensus 71 ~v~~~Pt~~~~~----~G~~v~~ 89 (107)
T d1gh2a_ 71 NISATPTFQFFR----NKVRIDQ 89 (107)
T ss_dssp TCCSSSEEEEEE----TTEEEEE
T ss_pred CceeceEEEEEE----CCEEEEE
Confidence 999999999995 8887755
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.30 E-value=6.3e-13 Score=99.28 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=53.9
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+|+.+++|||+||+||+.+.|.+.++++.+.+. +.++.++.|.. .+++++|+|
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~------------------------~~la~~~~V 54 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN------------------------PQKAMEYGI 54 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS------------------------CCTTTSTTT
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc---ccccccccccc------------------------ccccccCCc
Confidence 578899999999999999999999999887543 66666655433 567789999
Q ss_pred CCcCeEEEEcCCCCCCCee
Q 015833 112 EGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~ 130 (399)
.++||+++ +. +|+++
T Consensus 55 ~~~Pt~~i-~~---~g~~~ 69 (85)
T d1fo5a_ 55 MAVPTIVI-NG---DVEFI 69 (85)
T ss_dssp CCSSEEEE-TT---EEECC
T ss_pred eEeeEEEE-EC---CcEEE
Confidence 99999765 54 66544
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=4.6e-12 Score=96.77 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=57.5
Q ss_pred ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 194 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 194 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.+.|.+.++.|+++|||+|+.+.|.|+++...+. ++.+..|++|..
T Consensus 12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~-----------~i~~~~vd~~~~----------------------- 57 (96)
T d1hyua4 12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-----------RIKHTAIDGGTF----------------------- 57 (96)
T ss_dssp HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-----------TEEEEEEETTTC-----------------------
T ss_pred hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC-----------ceEEEEEecccc-----------------------
Confidence 4557788999999999999999999999876542 578888877755
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEec
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.++++.|+|+++||+++ +|+.+..
T Consensus 58 ~~l~~~~~I~~vPt~~~---ng~~~~~ 81 (96)
T d1hyua4 58 QNEITERNVMGVPAVFV---NGKEFGQ 81 (96)
T ss_dssp HHHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred hHHHhhcccccccEEEE---CCEEEEe
Confidence 78999999999999865 7887754
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.30 E-value=2.2e-12 Score=101.74 Aligned_cols=70 Identities=19% Similarity=0.393 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+|||+||++|+.+.|.|.++++++. ++.++.|+.|+. ..++++|+
T Consensus 25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~------------------------~~l~~~~~ 76 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNN------------------------SEIVSKCR 76 (113)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTC------------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCccchhhceeccccccccc----cccccccccccc------------------------hhhHHHcc
Confidence 57899999999999999999999999998874 388888877643 78899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+.+.+
T Consensus 77 V~~~Pt~~~~~----~G~~v~~ 94 (113)
T d1r26a_ 77 VLQLPTFIIAR----SGKMLGH 94 (113)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred ccCCCEEEEEE----CCEEEEE
Confidence 99999999986 8888755
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.27 E-value=1e-11 Score=96.72 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=59.0
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhc-CCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN-NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
+.+++++.+++.||++||++|+.+.|.+.+++.+... .+..+.++.|+.+.. ..+
T Consensus 10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~------------------------~~l 65 (107)
T d1a8la2 10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY------------------------PEW 65 (107)
T ss_dssp HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC------------------------HHH
T ss_pred HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc------------------------ccc
Confidence 3455667778889999999999999999999877543 333466666654322 788
Q ss_pred HhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 106 NRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+++|+|.++||++++ . +|+.+.+
T Consensus 66 ~~~~~V~~vPTi~i~-~---~G~~~~~ 88 (107)
T d1a8la2 66 ADQYNVMAVPKIVIQ-V---NGEDRVE 88 (107)
T ss_dssp HHHTTCCSSCEEEEE-E---TTEEEEE
T ss_pred ccccccccceEEEEE-e---CCeEEEE
Confidence 999999999997665 5 8877654
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=9.2e-13 Score=105.06 Aligned_cols=72 Identities=22% Similarity=0.462 Sum_probs=58.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|.++|.||++||++|+.+.|.+.++.+.+... ...+.++.|+++.. ..
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~-------~~~v~~~~vd~~~~-----------------------~~ 72 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE-------GSEIRLAKVDATEE-----------------------SD 72 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTT-------CCCCBCEEEETTTC-----------------------CS
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhccccccc-------ccceeeeccccccc-----------------------hh
Confidence 3689999999999999999999999999988654 23456666666543 56
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++..|+|.++||++++ ++|+.+
T Consensus 73 l~~~~~i~~~Pt~~~~-~~G~~~ 94 (120)
T d1meka_ 73 LAQQYGVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp SHHHHTCCSSSEEEEE-ESSCSS
T ss_pred HHHHhCCccCCeEEEE-ECCeEe
Confidence 8889999999999999 666543
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.24 E-value=8.3e-12 Score=96.61 Aligned_cols=70 Identities=17% Similarity=0.341 Sum_probs=59.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++++.+ ..++.|+.|.. ..++++|+
T Consensus 17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~------------------------~~~~~~~~ 68 (103)
T d1syra_ 17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEV------------------------SEVTEKEN 68 (103)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTT------------------------HHHHHHTT
T ss_pred CCCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccC------------------------cceeeeee
Confidence 478999999999999999999999999998743 55677766533 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++||++++. +|+.+.+
T Consensus 69 V~~~Pt~i~~k----~G~~v~~ 86 (103)
T d1syra_ 69 ITSMPTFKVYK----NGSSVDT 86 (103)
T ss_dssp CCSSSEEEEEE----TTEEEEE
T ss_pred eecceEEEEEE----CCEEEEE
Confidence 99999999986 8887755
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.24 E-value=5.7e-12 Score=99.13 Aligned_cols=71 Identities=17% Similarity=0.357 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+||++||++|+.+.|.|.++++++.+ +.++.|+.|.. ...++++|+
T Consensus 24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~-----------------------~~~l~~~~~ 76 (112)
T d1f9ma_ 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE-----------------------NKTLAKELG 76 (112)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST-----------------------THHHHHHHC
T ss_pred CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeeccccccc-----------------------chhhHhhee
Confidence 458999999999999999999999999998753 66777765421 178899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+.+.+
T Consensus 77 V~~~Pt~~~~k----~G~~v~~ 94 (112)
T d1f9ma_ 77 IRVVPTFKILK----ENSVVGE 94 (112)
T ss_dssp CSSSSEEEEEE----TTEEEEE
T ss_pred eccCCEEEEEE----CCEEEEE
Confidence 99999999995 8888765
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=3.6e-12 Score=104.47 Aligned_cols=69 Identities=22% Similarity=0.473 Sum_probs=56.4
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
++.|+|.||++||++|+.+.|.|.++++.|++. +..+..+.+|.+ ..+
T Consensus 30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~---------~~~v~~~~~d~~-----------------------~~~ 77 (140)
T d2b5ea1 30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANA---------TSDVLIAKLDHT-----------------------END 77 (140)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHH---------CSSCEEEEEEGG-----------------------GCC
T ss_pred CCCEEEEEEeccCcccchhHHHHHHHHHHHhcc---------ccceEEEeeecc-----------------------chh
Confidence 578999999999999999999999999999865 344555666644 345
Q ss_pred HHhCCCCccceEEEECCCCcEE
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++.|+|.++||++++ ++|+.+
T Consensus 78 ~~~~~v~~~Ptl~~f-~~g~~~ 98 (140)
T d2b5ea1 78 VRGVVIEGYPTIVLY-PGGKKS 98 (140)
T ss_dssp CSSCCCSSSSEEEEE-CCTTSC
T ss_pred ccccccccCCeEEEE-ECCEEc
Confidence 778999999999999 566554
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.19 E-value=8.9e-12 Score=99.01 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=55.1
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
...+++|+|.||++|||+|+.+.|.|.++++++.+.. +.++.| |.+...+++++
T Consensus 27 ~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~--~~~~~V------------------------d~d~~~~l~~~ 80 (119)
T d2es7a1 27 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVA------------------------DLEQSEAIGDR 80 (119)
T ss_dssp -CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC--CEEEEE------------------------CHHHHHHHHHT
T ss_pred hCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc--eEEEEE------------------------ECCCCHHHHHh
Confidence 3456799999999999999999999999999987643 777767 44555899999
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|+++|+++++. +|+.+..
T Consensus 81 ~~V~~~Pt~~~~~----~G~~v~~ 100 (119)
T d2es7a1 81 FNVRRFPATLVFT----DGKLRGA 100 (119)
T ss_dssp TTCCSSSEEEEES----CC----C
T ss_pred cCcCcceEEEEEE----cCeEEEE
Confidence 9999999999995 8877755
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.5e-11 Score=99.96 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=53.3
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
-.||+|+|+|||+||++|+.+.|.+.+..+..+.. .+ +|.|.+|.+.. .
T Consensus 23 ~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~--------~~--fv~v~vd~~~~---------------------~ 71 (135)
T d1sena_ 23 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELS--------HN--FVMVNLEDEEE---------------------P 71 (135)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH--------TT--SEEEEEEGGGS---------------------C
T ss_pred HcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc--------CC--cEEEeCCCCcC---------------------H
Confidence 35899999999999999999999988765544322 23 45555553321 1
Q ss_pred HHHH-hCCCCccceEEEECCCCcEEeccc
Q 015833 275 ELTK-YFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 275 ~~~~-~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+.. .+...++|+++++|++|+++....
T Consensus 72 ~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~ 100 (135)
T d1sena_ 72 KDEDFSPDGGYIPRILFLDPSGKVHPEII 100 (135)
T ss_dssp SCGGGCTTCSCSSEEEEECTTSCBCTTCC
T ss_pred HHHHHHhhcccceeEEEECCCCeEEEEec
Confidence 1122 234567899999999999886533
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.1e-11 Score=101.15 Aligned_cols=118 Identities=13% Similarity=0.115 Sum_probs=88.2
Q ss_pred hhcCCCCccc-C-CCCCceeecccc-CCcEEEEEEe-cCCChhhh-hhHHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEe
Q 015833 173 LTNHDRGYLL-G-HPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVS 246 (399)
Q Consensus 173 ~g~~~p~f~l-~-~~g~~~~~l~~~-~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~-~vv~is 246 (399)
+|+.+|+|++ + .+|+ .++++++ +||+|||+|| +.|+|.|. ++++.+.+.++.+.++ +. .|+.++
T Consensus 5 VGd~aP~f~l~~~~~~~-~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~---------g~~~i~~~s 74 (161)
T d1hd2a_ 5 VGDAIPAVEVFEGEPGN-KVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK---------GVQVVACLS 74 (161)
T ss_dssp TTCBCCCCEEECSSTTC-EEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEEEEEE
T ss_pred CCCcCCCeEEEecCCCc-EEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHc---------CCeEEEEEe
Confidence 7999999999 5 5578 9999985 8999999999 66999995 5888888888888865 55 566778
Q ss_pred cCCCHHHHHHHHhcCC-CcccccCCchhHHHHHhCCCC----c--------cceEEEECCCCcEEecc
Q 015833 247 TDRDQTSFESYFGTMP-WLALPFGDPTIKELTKYFDVQ----G--------IPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~-~~~~p~~~d~~~~~~~~~~v~----~--------~P~~~lid~~G~i~~~~ 301 (399)
+|. ....+++..... -..+++..|.+.++++.||+. . .-..++|+.+|+|++..
T Consensus 75 ~~~-~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ 141 (161)
T d1hd2a_ 75 VND-AFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALN 141 (161)
T ss_dssp SSC-HHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEE
T ss_pred cCc-hhhhhhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEE
Confidence 774 333344444332 346888999999999999972 1 12345555799988764
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.7e-12 Score=103.09 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=62.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++|+|.|||+|||+|+.+.|.|.++++++.+.. +.++.| |.+.+.+++++|+
T Consensus 35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~--~~~a~V------------------------d~d~~~~la~~~~ 88 (132)
T d2hfda1 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIA------------------------DLEQSEAIGDRFG 88 (132)
T ss_dssp SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC--EEEEEE------------------------CHHHHHHHHHHHT
T ss_pred CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc--ceeEEE------------------------EecCCHHHHHhhc
Confidence 45799999999999999999999999999987654 777777 5555599999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+.+..
T Consensus 89 V~~~PT~~~~~----~G~~v~~ 106 (132)
T d2hfda1 89 VFRFPATLVFT----GGNYRGV 106 (132)
T ss_dssp CCSCCEEEEEE----TTEEEEE
T ss_pred cCcceeEEEEE----cCcEeee
Confidence 99999999996 8887755
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=5.4e-12 Score=100.44 Aligned_cols=67 Identities=19% Similarity=0.429 Sum_probs=57.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|++||.|||+||++|+.+.|.+.++++.+++.+.++.++.|+.|.. ..++.+|+
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 78 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE------------------------SDLAQQYG 78 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC------------------------CSSHHHHT
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccc------------------------hhHHHHhC
Confidence 478999999999999999999999999999987655677777766533 56778899
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
|.++|+++++.
T Consensus 79 i~~~Pt~~~~~ 89 (120)
T d1meka_ 79 VRGYPTIKFFR 89 (120)
T ss_dssp CCSSSEEEEEE
T ss_pred CccCCeEEEEE
Confidence 99999999986
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.18 E-value=8.3e-12 Score=93.06 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=49.4
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.||++||+||+++.|.++++++++.++ +.++.|+.|.. .+++++|+|.++|
T Consensus 5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~V~~~P 57 (85)
T d1nhoa_ 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD------------------------REKAIEYGLMAVP 57 (85)
T ss_dssp EEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC------------------------GGGGGGTCSSCSS
T ss_pred EEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccc------------------------hhhHHhcCceEeC
Confidence 55699999999999999999999999654 78888866544 6788999999999
Q ss_pred eEEEEcC
Q 015833 116 CLVVLQP 122 (399)
Q Consensus 116 ~~~lid~ 122 (399)
++++ +.
T Consensus 58 t~~~-~~ 63 (85)
T d1nhoa_ 58 AIAI-NG 63 (85)
T ss_dssp EEEE-TT
T ss_pred EEEE-CC
Confidence 9765 54
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.18 E-value=7.1e-11 Score=94.45 Aligned_cols=73 Identities=10% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHH-------HHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSI-------YQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l-------~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
+++.++|.||||||++| ...|.+..+ ++.+.+. ++.+..|+++.+
T Consensus 27 ~~~~~~V~FyapwC~~~-~~~~~~~~~~~~~~~~a~~~~~~---------~v~~a~Vd~~~~------------------ 78 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDK---------GVGFGLVDSEKD------------------ 78 (124)
T ss_dssp HCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHTGGG---------TEEEEEEETTTS------------------
T ss_pred hCCeEEEEEECCCccch-hhhhHHHHHHHHHHHHHHHhccC---------CeEEEEEEeecc------------------
Confidence 35789999999999965 344444443 3333332 577777777655
Q ss_pred CCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 269 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
..+++.|+|+++||++++ ++|+.+...|
T Consensus 79 -----~~l~~~~~I~~yPTi~~f-~~g~~~~y~G 106 (124)
T d1a8ya1 79 -----AAVAKKLGLTEEDSIYVF-KEDEVIEYDG 106 (124)
T ss_dssp -----HHHHHTTTCCSTTCEEEE-ESSSEEECCS
T ss_pred -----cchhhccccccCCcEEEe-ccCccEEeeC
Confidence 789999999999999999 6788876554
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=3.2e-11 Score=95.76 Aligned_cols=65 Identities=22% Similarity=0.398 Sum_probs=57.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++.+||+||++||++|+.+.|.+.++++.+++.+ +.++.|++|.. ..++++|+
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~--v~~~~vd~~~~------------------------~~l~~~~~ 79 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTEN------------------------QDLCMEHN 79 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTC------------------------HHHHHHTT
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhcccc--eeeeeeeccch------------------------HHHHHHhc
Confidence 57899999999999999999999999999987643 88888866533 78999999
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
|.++|+++++.
T Consensus 80 v~~~Pti~~f~ 90 (119)
T d2b5ea4 80 IPGFPSLKIFK 90 (119)
T ss_dssp CCSSSEEEEEE
T ss_pred cccCCeEEEEE
Confidence 99999999994
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.16 E-value=3.1e-11 Score=95.26 Aligned_cols=75 Identities=20% Similarity=0.471 Sum_probs=59.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++|||+|+.+.|.|.+++++++.. +.+|+++... +....+.+.++|+
T Consensus 25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~------------------~~~~~~~~~~~~~ 81 (115)
T d1zmaa1 25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPS------------------QLNDLQAFRSRYG 81 (115)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGG------------------GHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeeccc------------------ccccccccccccc
Confidence 5789999999999999999999999999887533 4455555321 2233368899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|+++.+
T Consensus 82 V~~~PTli~~~----~gk~~~~ 99 (115)
T d1zmaa1 82 IPTVPGFVHIT----DGQINVR 99 (115)
T ss_dssp CCSSCEEEEEE----TTEEEEE
T ss_pred cccccEEEEEE----CCEEEEE
Confidence 99999999997 7877654
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.10 E-value=3.9e-13 Score=113.70 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=59.3
Q ss_pred eccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 015833 191 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 270 (399)
Q Consensus 191 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 270 (399)
.++++++++++|.||++|||+|+.++|.|.+++++++ ++.+..|++|.+.
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-----------~~~~~~i~~d~~~------------------- 97 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRAE------------------- 97 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEECHHHHH-------------------
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-----------CCcEEEEECccCH-------------------
Confidence 4567788999999999999999999999999988765 4678888777443
Q ss_pred chhHHHHHhC---CCCccceEEEECCCCcEEecc
Q 015833 271 PTIKELTKYF---DVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 271 d~~~~~~~~~---~v~~~P~~~lid~~G~i~~~~ 301 (399)
+..+.| +...+|.++++|.++....+.
T Consensus 98 ----~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~ 127 (166)
T d1z6na1 98 ----DDLRQRLALERIAIPLVLVLDEEFNLLGRF 127 (166)
T ss_dssp ----HHTTTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred ----HHHHHHHHhccccccceeecCccchhcccc
Confidence 334444 345678888888888776553
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.10 E-value=5e-10 Score=89.08 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=68.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+.+.+||.|||+||++|+. |.+.++++++... ...+.+..|.++... .+.+.+
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~-------~~~v~ia~Vd~~~~~------------------~~~n~~ 70 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKA-------TKDLLIATVGVKDYG------------------ELENKA 70 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHH-------CSSEEEEEEEECSST------------------TCTTHH
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHh-------CCCeEEEeccccccc------------------cccCHH
Confidence 3589999999999999994 9999999998765 456777778775321 012488
Q ss_pred HHHhCCC--CccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHh
Q 015833 276 LTKYFDV--QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 276 ~~~~~~v--~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 332 (399)
+++.|+| +++||++++.+++....... .. .++..+.|.+.|++..
T Consensus 71 l~~~~~i~~~~~PTi~~f~~g~~~~~~~~-----~~-------g~rt~~~l~~fv~~~~ 117 (122)
T d2c0ga2 71 LGDRYKVDDKNFPSIFLFKGNADEYVQLP-----SH-------VDVTLDNLKAFVSANT 117 (122)
T ss_dssp HHHHTTCCTTSCCEEEEESSSSSSEEECC-----TT-------SCCCHHHHHHHHHHHS
T ss_pred HHHHhhcccCCCCcEEEEeCCcccccccc-----cC-------CCCCHHHHHHHHHHhc
Confidence 9999988 57999999955443322110 11 1233577777777644
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.08 E-value=1.8e-10 Score=91.82 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=58.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+.|.+||.|||+||++|+. |.+.++++.+.+...++.+..|+++.. +...+.+++++|+
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~-------------------~~~~n~~l~~~~~ 76 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDY-------------------GELENKALGDRYK 76 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSS-------------------TTCTTHHHHHHTT
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccc-------------------ccccCHHHHHHhh
Confidence 5689999999999999994 999999999977656788888877533 2223388999998
Q ss_pred C--CCcCeEEEEcC
Q 015833 111 I--EGIPCLVVLQP 122 (399)
Q Consensus 111 v--~~~P~~~lid~ 122 (399)
| .++||++++..
T Consensus 77 i~~~~~PTi~~f~~ 90 (122)
T d2c0ga2 77 VDDKNFPSIFLFKG 90 (122)
T ss_dssp CCTTSCCEEEEESS
T ss_pred cccCCCCcEEEEeC
Confidence 8 57999999985
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=1.8e-11 Score=100.21 Aligned_cols=65 Identities=22% Similarity=0.344 Sum_probs=52.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.++.|||+|||+||++|+.+.|.|.++++.+++.+..+.++.+ |.+ ..++..|+
T Consensus 29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~--d~~------------------------~~~~~~~~ 82 (140)
T d2b5ea1 29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL--DHT------------------------ENDVRGVV 82 (140)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE--EGG------------------------GCCCSSCC
T ss_pred CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEee--ecc------------------------chhccccc
Confidence 4689999999999999999999999999999876534444433 321 34567899
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
|.++|+++++.
T Consensus 83 v~~~Ptl~~f~ 93 (140)
T d2b5ea1 83 IEGYPTIVLYP 93 (140)
T ss_dssp CSSSSEEEEEC
T ss_pred cccCCeEEEEE
Confidence 99999999997
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.04 E-value=2.4e-10 Score=87.00 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=52.9
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
..++|...++.|+++|||+|+.+.|.|++++... .++.+..|+.|.. .+++.
T Consensus 11 k~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~----~~i~~~~vd~~~~------------------------~~l~~ 62 (96)
T d1hyua4 11 RDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN----PRIKHTAIDGGTF------------------------QNEIT 62 (96)
T ss_dssp HHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC----TTEEEEEEETTTC------------------------HHHHH
T ss_pred HhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC----CceEEEEEecccc------------------------hHHHh
Confidence 4567888899999999999999999999988763 2488887766533 78899
Q ss_pred hcCCCCcCeEEE
Q 015833 108 KFDIEGIPCLVV 119 (399)
Q Consensus 108 ~~~v~~~P~~~l 119 (399)
+|+|+++|++++
T Consensus 63 ~~~I~~vPt~~~ 74 (96)
T d1hyua4 63 ERNVMGVPAVFV 74 (96)
T ss_dssp HTTCCSSSEEEE
T ss_pred hcccccccEEEE
Confidence 999999999754
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.03 E-value=5.7e-11 Score=93.70 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=48.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|++||+||++||++|+++.|.|.++++.+.... ....+.+.....+ ..
T Consensus 20 ~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~-----~~~~~~~~~~~~~--------------------------~~ 68 (116)
T d2djja1 20 TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSE-----FKDRVVIAKVDAT--------------------------AN 68 (116)
T ss_dssp TSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSS-----CTTSSEEEEEETT--------------------------TS
T ss_pred CCCEEEEEEecccccccccchHHHHHHHHHhccc-----ccceeEEEecccc--------------------------hh
Confidence 5889999999999999999999999999997540 0001222222221 22
Q ss_pred HHhCCCCccceEEEECCCCc
Q 015833 277 TKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~ 296 (399)
+..++|+++||++++ ++|+
T Consensus 69 ~~~~~v~~~Pti~~f-~~g~ 87 (116)
T d2djja1 69 DVPDEIQGFPTIKLY-PAGA 87 (116)
T ss_dssp CCSSCCSSSSEEEEE-CSSC
T ss_pred hhcccccCCCEEEEE-ECCc
Confidence 456899999999999 5553
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.6e-10 Score=94.51 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=84.6
Q ss_pred cccccccCCeEEec-CCCCEEecccc-CCCEEEEEEe-cCCCcccH-hhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 015833 6 WYVQQLRRRMTSTK-EIGEEVKVSDL-EGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 81 (399)
Q Consensus 6 ~~~~~~~p~f~l~d-~~G~~v~l~~~-~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~ 81 (399)
..+|..+|+|+|.+ .+|++++|+++ +||.|+|+|| +.|+|.|. .+++.+.+.++.+++.| ..+|+.++.|.. ..
T Consensus 3 ikVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g-~~~i~~~s~~~~-~~ 80 (161)
T d1hd2a_ 3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG-VQVVACLSVNDA-FV 80 (161)
T ss_dssp CCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEESSCH-HH
T ss_pred CCCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcC-CeEEEEEecCch-hh
Confidence 56899999999986 55899999995 8999999999 99999995 57888999999998876 234555666543 33
Q ss_pred HHHhHhcCCCc-ccc-cCChHHHHHHHhhcCCCC------------cCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNYRACMPWL-AVP-YSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~~~~~~~~-~~~-~~d~~~~~~l~~~~~v~~------------~P~~~lid~~~~~G~i~~~~ 133 (399)
...+....... .++ .+|. ..++++.||+.. .-..++|+. +|.|....
T Consensus 81 ~~~~~~~~~~~~~~~llsD~--~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~---~G~I~~~~ 141 (161)
T d1hd2a_ 81 TGEWGRAHKAEGKVRLLADP--TGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ---DGIVKALN 141 (161)
T ss_dssp HHHHHHHTTCTTTCEEEECT--TCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE---TTEEEEEE
T ss_pred hhhhhhhcccccccccccCC--cceeeeeeeeeeccccCccccccEEeEEEEEEC---CCEEEEEE
Confidence 34444332211 122 2343 378888888731 234566776 99887553
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.94 E-value=1.9e-09 Score=85.87 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=52.9
Q ss_pred CCCEEEEEEecCCCccc------HhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHH
Q 015833 31 EGKVTALYFSANWYPPC------GNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 104 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C------~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 104 (399)
+++.++|+|||+||++| ..+.+.+..+++.+.+.+ +.+..|+.+.. ..
T Consensus 27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~--v~~a~Vd~~~~------------------------~~ 80 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD------------------------AA 80 (124)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEETTTS------------------------HH
T ss_pred hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCC--eEEEEEEeecc------------------------cc
Confidence 46899999999999975 333344445555555543 88888866533 88
Q ss_pred HHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 105 LNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 105 l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++++|+|.++||++++. +|+.+..
T Consensus 81 l~~~~~I~~yPTi~~f~----~g~~~~y 104 (124)
T d1a8ya1 81 VAKKLGLTEEDSIYVFK----EDEVIEY 104 (124)
T ss_dssp HHHTTTCCSTTCEEEEE----SSSEEEC
T ss_pred hhhccccccCCcEEEec----cCccEEe
Confidence 99999999999999997 6666543
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.94 E-value=1.4e-10 Score=91.29 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=48.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCc--EEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD--FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~--~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
.+|++||+|||+||++|+++.|.|.++++.+.+.... +.+..... ..++..
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 71 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDA---------------------------TANDVP 71 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEET---------------------------TTSCCS
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEeccc---------------------------chhhhc
Confidence 4689999999999999999999999999999765311 12221211 233457
Q ss_pred cCCCCcCeEEEEc
Q 015833 109 FDIEGIPCLVVLQ 121 (399)
Q Consensus 109 ~~v~~~P~~~lid 121 (399)
++|.++|+++++.
T Consensus 72 ~~v~~~Pti~~f~ 84 (116)
T d2djja1 72 DEIQGFPTIKLYP 84 (116)
T ss_dssp SCCSSSSEEEEEC
T ss_pred ccccCCCEEEEEE
Confidence 8999999999996
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.94 E-value=1.4e-09 Score=90.89 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=91.0
Q ss_pred hhhcCCCCccc---CC--CCCceeeccc-cCCcEEEEEEe-cCCChhhh-hhHHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 015833 172 LLTNHDRGYLL---GH--PPDEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFEVV 243 (399)
Q Consensus 172 ~~g~~~p~f~l---~~--~g~~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv 243 (399)
.+|+.+|+|+| +. .++ ++++++ ++||+|+|+|| +.+++.|. +..+......+.+..+ ...+|+
T Consensus 5 ~vGd~~Pdf~l~~~~~~~~~~-~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~--------g~~~v~ 75 (162)
T d1tp9a1 5 AVGDVLPDGKLAYFDEQDQLQ-EVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK--------GVTEIL 75 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEE-EEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--------TCCCEE
T ss_pred CCCCCCCCeEEEeecCCCCce-EEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHc--------CCccee
Confidence 37999999997 22 344 789988 48999999999 67999996 5777777777777765 235799
Q ss_pred EEecCCCHHHHHHHHhcCC-CcccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEecc
Q 015833 244 FVSTDRDQTSFESYFGTMP-WLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 244 ~is~d~~~~~~~~~~~~~~-~~~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~ 301 (399)
+||+| +....+++....+ ...+++..|...++++.||+. ....++||| +|+|++..
T Consensus 76 ~isvd-~~~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ 143 (162)
T d1tp9a1 76 CISVN-DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp EEESS-CHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred eeecc-chhhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEE
Confidence 99998 5566666666555 356888899999999999973 234678998 89988763
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.1e-09 Score=88.26 Aligned_cols=76 Identities=13% Similarity=0.298 Sum_probs=56.4
Q ss_pred ccCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 015833 194 SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 270 (399)
Q Consensus 194 ~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 270 (399)
.-++|+++|+|+++||++|+.+.... .++.+.+.+ ++.++.|+.+...
T Consensus 39 k~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~----------~fV~~~v~~~~~e------------------- 89 (147)
T d2dlxa1 39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----------HFIFWQVYHDSEE------------------- 89 (147)
T ss_dssp HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----------TEEEEEEESSSHH-------------------
T ss_pred HHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh----------heeEeeecccchh-------------------
Confidence 34589999999999999999876643 334444443 4667777666432
Q ss_pred chhHHHHHhCCCCccceEEEECC-CCcEEec
Q 015833 271 PTIKELTKYFDVQGIPCLVIIGP-EGKTVTK 300 (399)
Q Consensus 271 d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~ 300 (399)
...+++.|+|.++|++++||+ +|+++..
T Consensus 90 --~~~~~~~y~v~~~Pti~~idp~~ge~v~~ 118 (147)
T d2dlxa1 90 --GQRYIQFYKLGDFPYVSILDPRTGQKLVE 118 (147)
T ss_dssp --HHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred --hhhhhhheecCceeEEEEEeCCCCeEecc
Confidence 477899999999999999997 4777644
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=7.3e-10 Score=89.68 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=53.8
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
+.-+||+|+|+|||+||++|+.+.|.+.+..+..+.. .++.++.|+.+.. ..+..
T Consensus 21 A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~fv~v~vd~~~~------------------------~~~~~ 75 (135)
T d1sena_ 21 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS-HNFVMVNLEDEEE------------------------PKDED 75 (135)
T ss_dssp HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH-TTSEEEEEEGGGS------------------------CSCGG
T ss_pred HHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc-CCcEEEeCCCCcC------------------------HHHHH
Confidence 3447999999999999999999999988766554432 3466665544322 11111
Q ss_pred -hcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 108 -KFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 108 -~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+...++|+++++++ +|+++..
T Consensus 76 ~~~~~~~~Pt~~~~d~---~G~~~~~ 98 (135)
T d1sena_ 76 FSPDGGYIPRILFLDP---SGKVHPE 98 (135)
T ss_dssp GCTTCSCSSEEEEECT---TSCBCTT
T ss_pred HHhhcccceeEEEECC---CCeEEEE
Confidence 234456899999999 9988754
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.85 E-value=2.8e-09 Score=89.12 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=86.1
Q ss_pred hhhcCCCCccc-CCCCC--ceeecccc-CCcEEEEEEe-cCCChhhhhhHHHHHHHHH-HHHhhhhhcCCCCCCEEEEEE
Q 015833 172 LLTNHDRGYLL-GHPPD--EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQ-KIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~vv~i 245 (399)
+.|..+|+|++ ...|+ +.++++++ +||+|||+|+ +.++|.|..++..+...+. .+..+ + .-.++.+
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~-------~-~~~vv~~ 73 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-------G-VDDILVV 73 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-------T-CCEEEEE
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhh-------c-ccceeee
Confidence 57999999999 44442 16899995 8999999999 6799999998776555443 33332 1 2245555
Q ss_pred ecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC-----------CccceEEEECCCCcEEecc
Q 015833 246 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 246 s~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 301 (399)
+++ +....+++.+.+.-..+++..|....+++.||+ .....++|+| +|+|+...
T Consensus 74 ~s~-d~~~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~ 138 (163)
T d1nm3a2 74 SVN-DTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMF 138 (163)
T ss_dssp ESS-CHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred ecC-CHHHHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEE
Confidence 555 455555555656667789999999999999986 2445689998 99987663
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.79 E-value=4.5e-09 Score=88.08 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=56.6
Q ss_pred eccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 26 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 26 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
.+.+++++.+++.||++|||+|+.++|.|.++++.++ ++.+..|+.|.+ ...
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~----~~~~~~i~~d~~------------------------~~~ 99 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRA------------------------EDD 99 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHH------------------------HHH
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC----CCcEEEEECccC------------------------HHH
Confidence 3567899999999999999999999999999998864 366666755433 444
Q ss_pred Hhhc---CCCCcCeEEEEcCCCCCCCeeec
Q 015833 106 NRKF---DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 106 ~~~~---~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+.| +...+|.+++.+. ++.....
T Consensus 100 ~~~~~~~~~~~~p~~~~~d~---~~~~~~~ 126 (166)
T d1z6na1 100 LRQRLALERIAIPLVLVLDE---EFNLLGR 126 (166)
T ss_dssp TTTTTTCSSCCSSEEEEECT---TCCEEEE
T ss_pred HHHHHHhccccccceeecCc---cchhccc
Confidence 4555 3356788888887 6655533
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.77 E-value=7.2e-09 Score=86.44 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=85.4
Q ss_pred cccccccccCCeEEe----cCCCCEEecccc-CCCEEEEEEe-cCCCcccH-hhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 4 SQWYVQQLRRRMTST----KEIGEEVKVSDL-EGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~----d~~G~~v~l~~~-~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
.+..+|..+|+|+|. +..+++++++++ +||.|+|+|| +.+++.|. +..+......+.++..| ..+++.||+|
T Consensus 2 ~~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g-~~~v~~isvd 80 (162)
T d1tp9a1 2 APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG-VTEILCISVN 80 (162)
T ss_dssp CCCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCCEEEEESS
T ss_pred CCCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcC-Ccceeeeecc
Confidence 457899999999996 455678999885 9999999999 99999996 56788888888888765 3567788886
Q ss_pred CChHHHHHhHhcCCC-cccc-cCChHHHHHHHhhcCCC-----------CcCeEEEEcCCCCCCCeeec
Q 015833 77 EDLNAFNNYRACMPW-LAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 77 ~~~~~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~~G~i~~~ 132 (399)
.. .....+....+. ..++ .+|. ..++.+.|++. ..-..++|| +|.|.+.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~lsD~--~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId----dg~I~~~ 142 (162)
T d1tp9a1 81 DP-FVMKAWAKSYPENKHVKFLADG--SATYTHALGLELDLQEKGLGTRSRRFALLVD----DLKVKAA 142 (162)
T ss_dssp CH-HHHHHHHHTCTTCSSEEEEECT--TSHHHHHTTCEEEETTTTSEEEECCEEEEEE----TTEEEEE
T ss_pred ch-hhhhhhhhhcccccccccccch--hhHHHhhhhhccccccccCCcEEEEEEEEEE----CCEEEEE
Confidence 44 444444554432 1122 2233 36788888763 235677887 7877754
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=1.1e-08 Score=89.53 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=57.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+.+|+|.||++||++|+.+.|.|.+|+.+|. ++.++.|..+. ..+
T Consensus 120 ~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-----------~vkF~ki~~~~------------------------~~~ 164 (217)
T d2trcp_ 120 VTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----------MVKFCKIRASN------------------------TGA 164 (217)
T ss_dssp TCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----------TSEEEEEEHHH------------------------HTC
T ss_pred CCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-----------cceEEEEcccc------------------------chh
Confidence 4689999999999999999999999998875 45677775541 113
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
...|++.++||++++ ++|+++.+..+
T Consensus 165 ~~~~~i~~lPtl~~y-k~G~~v~~~vg 190 (217)
T d2trcp_ 165 GDRFSSDVLPTLLVY-KGGELISNFIS 190 (217)
T ss_dssp STTSCGGGCSEEEEE-ETTEEEEEETT
T ss_pred HHhCCCCCCCeEEEE-ECCEEEEEEEC
Confidence 457899999999999 99999987544
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.6e-08 Score=81.52 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=55.1
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
.-++|+|||+|+++||++|+.+.... .++.+.+.++ +.++.|+.|.. + ...+
T Consensus 39 k~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~---------------------e-~~~~ 93 (147)
T d2dlxa1 39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSE---------------------E-GQRY 93 (147)
T ss_dssp HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSH---------------------H-HHHH
T ss_pred HHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccch---------------------h-hhhh
Confidence 34689999999999999999987533 3344444433 77777766422 2 2778
Q ss_pred HhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 106 NRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
.+.|++.++|+++++++ .+|+++
T Consensus 94 ~~~y~v~~~Pti~~idp--~~ge~v 116 (147)
T d2dlxa1 94 IQFYKLGDFPYVSILDP--RTGQKL 116 (147)
T ss_dssp HHHHTCCSSSEEEEECT--TTCCCC
T ss_pred hhheecCceeEEEEEeC--CCCeEe
Confidence 89999999999999997 245554
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=1.6e-08 Score=77.18 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=47.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+-++|+.|+++||++|....+.|+++..+| .+..|.+|.+. +.++
T Consensus 15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~--------------~~~~v~vd~~~---------------------~~~l 59 (100)
T d1wjka_ 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRF--------------ILQEVDITLPE---------------------NSTW 59 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSSS--------------EEEEEETTSST---------------------THHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHhhhhc--------------ceEEEeccccc---------------------CHHH
Confidence 356889999999999999998888765443 33445555433 3789
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.+.|+++ +|++++ +|+.+..
T Consensus 60 ~~~y~~~-VPvl~i---dg~~~~~ 79 (100)
T d1wjka_ 60 YERYKFD-IPVFHL---NGQFLMM 79 (100)
T ss_dssp HHHSSSS-CSEEEE---SSSEEEE
T ss_pred HHHhccc-CCceee---cCceEEe
Confidence 9999987 997654 5666544
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.48 E-value=1.6e-07 Score=78.08 Aligned_cols=118 Identities=11% Similarity=0.158 Sum_probs=74.2
Q ss_pred ccccccCCeEEecCCC---CEEecccc-CCCEEEEEEe-cCCCcccHhhHHHHHHHHH-HHhcCCCcEEEEEEecCCChH
Q 015833 7 YVQQLRRRMTSTKEIG---EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYE-ELRNNGSDFEVVFVSSDEDLN 80 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G---~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~-~~~~~~~~~~ii~Vs~D~~~~ 80 (399)
..|..+|+|+++...| +.++|+++ +||.|+|+|+ +.+.|.|..+...+..... .+...+. -.++.++.+.. .
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~-~~vv~~~s~d~-~ 79 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGV-DDILVVSVNDT-F 79 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTC-CEEEEEESSCH-H
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcc-cceeeeecCCH-H
Confidence 3588999999997766 47999996 9999999998 9999999998766555443 3344432 23444444433 3
Q ss_pred HHHHhHhcCCCcccc-cCChHHHHHHHhhcCC-----------CCcCeEEEEcCCCCCCCeeec
Q 015833 81 AFNNYRACMPWLAVP-YSDLETKKALNRKFDI-----------EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v-----------~~~P~~~lid~~~~~G~i~~~ 132 (399)
...++.+...-..++ ++|.. ..+.+.|++ ......++++ +|.|...
T Consensus 80 ~~~a~~~~~~~~~~~llsD~~--~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid----dG~I~~~ 137 (163)
T d1nm3a2 80 VMNAWKEDEKSENISFIPDGN--GEFTEGMGMLVGKEDLGFGKRSWRYSMLVK----NGVVEKM 137 (163)
T ss_dssp HHHHHHHHTTCTTSEEEECTT--SHHHHHTTCEEECTTTTCCEEECCEEEEEE----TTEEEEE
T ss_pred HHHHHhhhhccCceeeeccCC--hHHHHHhhhhccccccccccccceEEEEEe----CCEEEEE
Confidence 333333332211121 22332 566666655 2455678886 8877654
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.43 E-value=2.1e-07 Score=73.41 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=49.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe---cCCCHHHHHHHHhcCCCcccccCCch
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS---TDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is---~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+++.+||.|+++||..|.. |.++++++++.+. .+.-+..|. +|.+.
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~--------~~~~~~~V~~~~vd~~~--------------------- 68 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASS--------DDLLVAEVGISDYGDKL--------------------- 68 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGC--------SSEEEEEEESCCTTSCH---------------------
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHH--------HHHhhhccceeeccccc---------------------
Confidence 4689999999999988864 7889999888754 233232343 34443
Q ss_pred hHHHHHhCC--CCccceEEEECCCCc
Q 015833 273 IKELTKYFD--VQGIPCLVIIGPEGK 296 (399)
Q Consensus 273 ~~~~~~~~~--v~~~P~~~lid~~G~ 296 (399)
+..++..|+ |+++||++++ ++|+
T Consensus 69 n~~l~~~~~~~I~~yPTi~~f-~~G~ 93 (122)
T d1g7ea_ 69 NMELSEKYKLDKESYPVFYLF-RDGD 93 (122)
T ss_dssp HHHHHHHHTCSSSSCEEEEEE-ESSC
T ss_pred cHHHHHhhcccccCCCeEEEE-ecCc
Confidence 477887754 7899999999 6664
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.34 E-value=6.9e-07 Score=70.31 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=51.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++++||+|+++||.+|.. |.+.++++.+.+.. +..+..|.+..- |.+.+..++.+|+
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~-~~~~~~V~~~~v-------------------d~~~n~~l~~~~~ 77 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSD-DLLVAEVGISDY-------------------GDKLNMELSEKYK 77 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCS-SEEEEEEESCCT-------------------TSCHHHHHHHHHT
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHH-HHhhhccceeec-------------------cccccHHHHHhhc
Confidence 5789999999999988864 88999999998753 344434544211 4444578888764
Q ss_pred --CCCcCeEEEEcC
Q 015833 111 --IEGIPCLVVLQP 122 (399)
Q Consensus 111 --v~~~P~~~lid~ 122 (399)
|.++||++++..
T Consensus 78 ~~I~~yPTi~~f~~ 91 (122)
T d1g7ea_ 78 LDKESYPVFYLFRD 91 (122)
T ss_dssp CSSSSCEEEEEEES
T ss_pred ccccCCCeEEEEec
Confidence 779999999973
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=1.5e-07 Score=82.04 Aligned_cols=69 Identities=10% Similarity=0.165 Sum_probs=55.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++.+|+|+||++||++|+.+.|.|..++.+|.+ +.++.|+.+ . ..+...|+
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~----vkF~ki~~~------------------------~-~~~~~~~~ 169 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM----VKFCKIRAS------------------------N-TGAGDRFS 169 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT----SEEEEEEHH------------------------H-HTCSTTSC
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc----ceEEEEccc------------------------c-chhHHhCC
Confidence 356899999999999999999999999998743 667777442 1 12346799
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++. +|.++..
T Consensus 170 i~~lPtl~~yk----~G~~v~~ 187 (217)
T d2trcp_ 170 SDVLPTLLVYK----GGELISN 187 (217)
T ss_dssp GGGCSEEEEEE----TTEEEEE
T ss_pred CCCCCeEEEEE----CCEEEEE
Confidence 99999999997 8988865
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.03 E-value=1.1e-05 Score=67.14 Aligned_cols=102 Identities=14% Similarity=0.256 Sum_probs=76.7
Q ss_pred eeeccc-cCCcEEEEEEe-cCCChhhhh-hHHHHHHHHHHHH-hhhhhcCCCCCCE-EEEEEecCCCHHHHHHHHhcCCC
Q 015833 189 KVPVSS-LVGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKIK-QNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMPW 263 (399)
Q Consensus 189 ~~~l~~-~~gk~vll~F~-a~wC~~C~~-~~~~l~~l~~~~~-~~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~ 263 (399)
.+++++ ++||.|+|.+. +...|.|.. .+|.+.+.+++|. .+ ++ +|+.||+| +.-..+++.+.++.
T Consensus 33 ~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~---------gvd~I~~iSvn-D~fv~~aW~~~~~~ 102 (179)
T d1xiya1 33 SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN---------NFDDIYCITNN-DIYVLKSWFKSMDI 102 (179)
T ss_dssp EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS---------CCSEEEEEESS-CHHHHHHHHHHTTC
T ss_pred EeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhc---------CCceEEEEecC-CHHHHHHHHhhcCc
Confidence 456666 48888877776 569999966 6999999999984 44 44 79999998 56666666665554
Q ss_pred cccccCCchhHHHHHhCCC-----------CccceEEEECCCCcEEecc
Q 015833 264 LALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 264 ~~~p~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 301 (399)
-.+.+..|.+.++++.+|+ ++....+|++ +|+|....
T Consensus 103 ~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~ 150 (179)
T d1xiya1 103 KKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF 150 (179)
T ss_dssp CSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred ceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEE
Confidence 4568899999999999987 2334578887 89888653
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=8.5e-07 Score=67.19 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=42.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
...++++.|+++||++|....+.|.++...+. ++++ .+|.+ .+.++.++|+
T Consensus 14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-----~~~v--~vd~~----------------------~~~~l~~~y~ 64 (100)
T d1wjka_ 14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-----LQEV--DITLP----------------------ENSTWYERYK 64 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-----EEEE--ETTSS----------------------TTHHHHHHSS
T ss_pred CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-----eEEE--ecccc----------------------cCHHHHHHhc
Confidence 34578999999999999999998888755432 3343 33322 1278999999
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
++ +|+++ +|
T Consensus 65 ~~-VPvl~-id 73 (100)
T d1wjka_ 65 FD-IPVFH-LN 73 (100)
T ss_dssp SS-CSEEE-ES
T ss_pred cc-CCcee-ec
Confidence 87 99654 44
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=4.3e-05 Score=62.35 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec--CC-CHH----------------HHHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST--DR-DQT----------------SFES 256 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~--d~-~~~----------------~~~~ 256 (399)
.+|.+++.|+.+-||+|+++.|.+.++.+ . ++.++.+.. .. ... .+..
T Consensus 25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~---------~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~ 91 (156)
T d1eeja1 25 QEKHVITVFTDITCGYCHKLHEQMADYNA----L---------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDD 91 (156)
T ss_dssp TCCEEEEEEECTTCHHHHHHHTTHHHHHH----T---------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHH
T ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHhhc----c---------CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHH
Confidence 46789999999999999999998887643 2 355555543 11 111 1111
Q ss_pred HHhcCCC--cccccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 257 YFGTMPW--LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 257 ~~~~~~~--~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
....... .......+.+..+++.+||+|+|++|+ .+|+++
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v 133 (156)
T d1eeja1 92 VMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV 133 (156)
T ss_dssp HHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred HHhccccchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence 1111111 111112235778899999999999765 458765
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=7e-05 Score=61.88 Aligned_cols=98 Identities=10% Similarity=0.120 Sum_probs=62.0
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---CC-------------HHHHHH
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---RD-------------QTSFES 256 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d---~~-------------~~~~~~ 256 (399)
..-..+.+|+.|+.+.||+|+++.+.+.++.++. .+.++.+.+. .+ +..+..
T Consensus 32 G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~------------~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~ 99 (169)
T d1v58a1 32 GKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG------------KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQ 99 (169)
T ss_dssp SCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT------------SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHH
T ss_pred CCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc------------ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHH
Confidence 3333568899999999999999999987765432 4777777652 11 111112
Q ss_pred HHhcCCC---cccc-cC-------CchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 257 YFGTMPW---LALP-FG-------DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 257 ~~~~~~~---~~~p-~~-------~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
+...... ...+ .. .+.+..+++.+||+++|++|+.|++|++....|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G 156 (169)
T d1v58a1 100 QYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVG 156 (169)
T ss_dssp HHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEES
T ss_pred HHHHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecC
Confidence 2211110 1111 11 123566788999999999999999998755443
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.65 E-value=0.00045 Score=56.48 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=41.0
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+.+.+-.+++.++.|+...||+|.++.+.+.++.+++.+. ..+.++.+..
T Consensus 16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 66 (172)
T d1z6ma1 16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS--------GKVERIIKLF 66 (172)
T ss_dssp SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT--------TSEEEEEEEC
T ss_pred CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccc--------cceeeeeccc
Confidence 34566666788999999999999999999999999998764 2566776665
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.57 E-value=0.00035 Score=56.27 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=52.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--C-CHHHHH---HHH-----------
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--R-DQTSFE---SYF----------- 258 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--~-~~~~~~---~~~----------- 258 (399)
.+|.+++.|+-+.||+|+++.+.+.++.+. +..++.+... . ...... ...
T Consensus 25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~ 91 (150)
T d1t3ba1 25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL-------------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNE 91 (150)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHHT-------------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHhHHHHHHhcc-------------CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHh
Confidence 457889999999999999999998877542 3445554431 1 111110 000
Q ss_pred -hcCCCcc---cccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 259 -GTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 259 -~~~~~~~---~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
....... ..-..+.+..+++.+||+++|++|+. +|+++
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~i 133 (150)
T d1t3ba1 92 AEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTS--TGELI 133 (150)
T ss_dssp HHTTCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCCC
T ss_pred HhhhccccchhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcEe
Confidence 0111011 11112256788999999999988764 57654
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00084 Score=55.06 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=60.6
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC---C-------------ChHHHHHhHhc
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD---E-------------DLNAFNNYRAC 88 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D---~-------------~~~~~~~~~~~ 88 (399)
+..-.-..+.+++.|+-+.||+|+++.+.+.++.+. + .+.++++.+. . ++....++...
T Consensus 29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~----~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~ 103 (169)
T d1v58a1 29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 103 (169)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhc----c-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHH
Confidence 444444567889999999999999999998876543 2 3777777652 1 11112222221
Q ss_pred CC----CcccccCC------hHHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 89 MP----WLAVPYSD------LETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 89 ~~----~~~~~~~d------~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
.. -....... .+.+..+++.+||.++|++++.+. +|++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~---~g~~~ 152 (169)
T d1v58a1 104 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK---ENTLQ 152 (169)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET---TTEEE
T ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECC---CCCEE
Confidence 11 01111111 113456788899999999999998 77653
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.22 E-value=0.00045 Score=57.01 Aligned_cols=118 Identities=11% Similarity=0.235 Sum_probs=74.7
Q ss_pred cccccCCeEEe----------cCCC-----CEEecccc-CCCEEEEEEe-cCCCcccHh-hHHHHHHHHHHH-hcCCCcE
Q 015833 8 VQQLRRRMTST----------KEIG-----EEVKVSDL-EGKVTALYFS-ANWYPPCGN-FTGVLVDVYEEL-RNNGSDF 68 (399)
Q Consensus 8 ~~~~~p~f~l~----------d~~G-----~~v~l~~~-~gk~vlv~F~-a~wC~~C~~-~~p~l~~l~~~~-~~~~~~~ 68 (399)
++...|+.++. +.+| ++++++++ +||.|+|++. +..-|.|.. ++|.+.+.++++ +.+| +
T Consensus 2 ~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~g--v 79 (179)
T d1xiya1 2 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--F 79 (179)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--C
T ss_pred CCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcC--C
Confidence 35567777653 3444 45777775 8887777766 778899966 699999999998 5666 4
Q ss_pred -EEEEEecCCChHHHHHhHhcCCCcccc-cCChHHHHHHHhhcCC-----------CCcCeEEEEcCCCCCCCeeeccc
Q 015833 69 -EVVFVSSDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDI-----------EGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 69 -~ii~Vs~D~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v-----------~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
+|+.|++|. .-.++++.+.++...+. .+|. ..++.+.+|+ +..-..++++ +|.|.....
T Consensus 80 d~I~~iSvnD-~fv~~aW~~~~~~~~I~~lsD~--~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid----dg~I~~~~v 151 (179)
T d1xiya1 80 DDIYCITNND-IYVLKSWFKSMDIKKIKYISDG--NSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE----NNILVKMFQ 151 (179)
T ss_dssp SEEEEEESSC-HHHHHHHHHHTTCCSSEEEECT--TSHHHHHTTCEEECGGGTCCEEECCEEEEEE----TTEEEEEEE
T ss_pred ceEEEEecCC-HHHHHHHHhhcCcceEEEeeCC--chHHHHhhhcccccccCCCeeEEeeEEEEEE----CCEEEEEEE
Confidence 788899864 34445555544322222 2233 2677777765 2344567776 787775543
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00045 Score=57.37 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=32.4
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
..++++++.|+.-.||+|+.+.+.+..+.+..... ..++.++...+
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~ 61 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKL-------PEGVKMTKYHV 61 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTS-------CTTCCEEEEEC
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhcc-------CCceEEEEEec
Confidence 34678899999999999999988876655543322 23456666655
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00057 Score=55.30 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=56.7
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec--C-CChHHHH----------------Hh
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--D-EDLNAFN----------------NY 85 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~--D-~~~~~~~----------------~~ 85 (399)
+.+..-.+|.+++.|+-+-||+|+++.|.+.++.+ .+ +.++++.. . ....+.. ..
T Consensus 19 iv~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (156)
T d1eeja1 19 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV 92 (156)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc----cC--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHH
Confidence 44444567899999999999999999999888743 22 55555543 1 1111111 11
Q ss_pred HhcCCCcccc-cCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 86 RACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 86 ~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
.......... -.....+.++++.+||+++|++++. +|+++
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~~-----nG~~v 133 (156)
T d1eeja1 93 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS-----NGTLV 133 (156)
T ss_dssp HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT-----TSCEE
T ss_pred HhccccchhhhcchHHHHHHHHHHcCCcCCCEEEEe-----CCeEe
Confidence 1111111111 1123456789999999999996653 56655
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.13 E-value=0.00055 Score=56.27 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhh
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN 229 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~ 229 (399)
.++++++.|+...||+|..+.+.+.++.+++.+.
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~ 50 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG 50 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc
Confidence 4688899999999999999999999988887543
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.91 E-value=0.002 Score=51.54 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=52.7
Q ss_pred eccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec--CC-ChHHHHHhHh---------------
Q 015833 26 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--DE-DLNAFNNYRA--------------- 87 (399)
Q Consensus 26 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~--D~-~~~~~~~~~~--------------- 87 (399)
....-.+|.+++.|+-+-||+|+++.+.+.++.+. + ..+..+.. .. ...+..+...
T Consensus 20 i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~ 93 (150)
T d1t3ba1 20 VYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL----G--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAE 93 (150)
T ss_dssp EECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred EECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc----C--ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHh
Confidence 33444678889999999999999999998887643 2 44444443 11 1111111100
Q ss_pred cCCCc-ccccCC-hHHHHHHHhhcCCCCcCeEEEEc
Q 015833 88 CMPWL-AVPYSD-LETKKALNRKFDIEGIPCLVVLQ 121 (399)
Q Consensus 88 ~~~~~-~~~~~d-~~~~~~l~~~~~v~~~P~~~lid 121 (399)
..... .....+ ...+.++++.+||+++|++++.|
T Consensus 94 ~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~n 129 (150)
T d1t3ba1 94 KGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTST 129 (150)
T ss_dssp TTCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEECTT
T ss_pred hhccccchhhhhHHHHHHHHHHhcCcCCCCEEEEcC
Confidence 00000 111111 23457889999999999888643
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.88 E-value=0.0054 Score=49.60 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=41.7
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
+.+-+-.+++.++.|+-..||+|.++.+.+.++.+++.+.+ .+.++.+..
T Consensus 17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 66 (172)
T d1z6ma1 17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF 66 (172)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeeccc
Confidence 55666777888999999999999999999999999998764 566666665
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.60 E-value=0.0048 Score=42.77 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=39.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|..++|++|.+....|.+ . ++.+..+.+|.+.+ ..+..+.+
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~-------~---------~i~~~~~~i~~~~~--------------------~~~~~~~~ 46 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR-------A---------GLAYNTVDISLDDE--------------------ARDYVMAL 46 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------T---------TCCCEEEETTTCHH--------------------HHHHHHHT
T ss_pred EEEEeCCCChhHHHHHHHHHH-------c---------CCceEEEEccCCHH--------------------HHHHHHHh
Confidence 456888999999976554432 2 46677777776643 23445667
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|...+|.+++ +|+.+
T Consensus 47 g~~tvP~i~i---~g~~i 61 (74)
T d1r7ha_ 47 GYVQAPVVEV---DGEHW 61 (74)
T ss_dssp TCBCCCEEEE---TTEEE
T ss_pred CCCCcCEEEE---CCEEE
Confidence 8899998754 45554
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.0043 Score=51.94 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=31.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+++.++.|+.-+||+|..+.|.|. ++.+.+.+ ++.++.+.+.
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~----------~v~~~~~~~~ 157 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE----------GVKMTKYHVN 157 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT----------TCCEEEEECS
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC----------CcEEEEEecC
Confidence 4678899999999999999999775 44444432 4666666553
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=96.05 E-value=0.0079 Score=48.86 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=33.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
.+++.+|.|+...||+|+.+.+.+.++.+++.+.+ .+....+.+
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 60 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGA-KFQKNHVSF 60 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTC-EEEEEECSS
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhccccc-ceeEEeccc
Confidence 57888999999999999999999999988876542 333344443
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0035 Score=51.60 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=35.4
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
..+++++|.|+.-.||||+++.+.+..+.+..+.....+.++...+.
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 62 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence 46788899999999999999999887766655544334666666553
|
| >d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Kinase suppressor of Ras, Ksr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.0039 Score=39.54 Aligned_cols=31 Identities=23% Similarity=0.696 Sum_probs=27.2
Q ss_pred CeecCCCCCCCCceeEEcCCCCCCCcCccccc
Q 015833 359 PFICCDCDEQGSGWAYQCLECGYEVHPKCVRA 390 (399)
Q Consensus 359 ~~~c~~C~~~~~~w~~~c~~c~~~~~~~~~~~ 390 (399)
.++|..|.++-. +.|+|.+|+|-.|.+|+..
T Consensus 14 ~~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~ 44 (49)
T d1kbea_ 14 SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp SCCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred CCCchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence 467999998885 7899999999999999854
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.019 Score=39.79 Aligned_cols=54 Identities=13% Similarity=0.319 Sum_probs=35.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..+||++|......|.+ . ++....+.++.+.+. .+..+..
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~-------~---------~i~y~~~~i~~~~~~--------------------~~~~~~~ 46 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN-------R---------GFDFEMINVDRVPEA--------------------AEALRAQ 46 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------T---------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred EEEEeCCCCccHHHHHHHHHh-------c---------CceeEEEeecCCHHH--------------------HHHHHhc
Confidence 456788999999976555432 2 456666777766432 2333456
Q ss_pred CCCccceEEE
Q 015833 281 DVQGIPCLVI 290 (399)
Q Consensus 281 ~v~~~P~~~l 290 (399)
|.+.+|.+++
T Consensus 47 g~~tvP~i~i 56 (76)
T d1h75a_ 47 GFRQLPVVIA 56 (76)
T ss_dssp TCCSSCEEEE
T ss_pred CCCCCCEEEE
Confidence 8899999765
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.013 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=27.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
++.|..++||+|.+....|.++..++. ++++.-+.++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~-----------~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----------DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS-----------SCEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC-----------CceEEEEecC
Confidence 467888999999988877777766664 4667666654
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=95.43 E-value=0.04 Score=38.10 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=43.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..++|+.|......|. +. .++.+.-|+++.+ .++.++|
T Consensus 2 ltLyt~~~C~LCe~A~~~l~-------~~--------~~~~~~~vdI~~d-----------------------~~l~~~y 43 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALA-------QA--------RAGAFFSVFIDDD-----------------------AALESAY 43 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHH-------HT--------TCCCEEEEECTTC-----------------------HHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH-------hc--------cCCcEEEEEccCC-----------------------HHHHHHh
Confidence 44567889999976433222 11 1456777777755 5677888
Q ss_pred CCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHH
Q 015833 281 DVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE 325 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 325 (399)
+.. +|.+ ++ .+|..... ||+++++.++.
T Consensus 44 ~~~-IPVl-~~-~~~~~l~w--------------~fd~~~l~~~L 71 (75)
T d1ttza_ 44 GLR-VPVL-RD-PMGRELDW--------------PFDAPRLRAWL 71 (75)
T ss_dssp TTT-CSEE-EC-TTCCEEES--------------CCCHHHHHHHH
T ss_pred CCe-eeEE-EE-CCeeEEcC--------------ccCHHHHHHHH
Confidence 865 7954 34 35665543 67776665543
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.26 E-value=0.14 Score=38.56 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=47.0
Q ss_pred ccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 194 SLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 194 ~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
.+++.+.++.|-+ ..|+.|..+...|+++.. . .+.+.+.....+...
T Consensus 19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~----l-------Sdki~~~~~~~~~~e--------------------- 66 (119)
T d1a8la1 19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSE----L-------TDKLSYEIVDFDTPE--------------------- 66 (119)
T ss_dssp GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHT----T-------CTTEEEEEEETTSHH---------------------
T ss_pred hCCCCEEEEEEecCCCchhHHHHHHHHHHHHh----h-------CCCeEEEEeccCcch---------------------
Confidence 3445555666654 479999876665555543 2 235677666666443
Q ss_pred hHHHHHhCCCCccceEEEECCCCc
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~ 296 (399)
..++++.|++...|++.|.+ +|+
T Consensus 67 ~~~~~~~~~ver~Ps~~i~~-~g~ 89 (119)
T d1a8la1 67 GKELAKRYRIDRAPATTITQ-DGK 89 (119)
T ss_dssp HHHHHHHTTCCSSSEEEEEE-TTB
T ss_pred hhhHHHhhccccCceEEEec-CCc
Confidence 47899999999999999885 443
|
| >d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: RAF-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0092 Score=38.28 Aligned_cols=33 Identities=27% Similarity=0.649 Sum_probs=28.4
Q ss_pred CCeecCCCCCCCCceeEEcCCCCCCCcCcccccc
Q 015833 358 GPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAV 391 (399)
Q Consensus 358 ~~~~c~~C~~~~~~w~~~c~~c~~~~~~~~~~~~ 391 (399)
.+-.|+.|.+.-. ..|+|.+|++-.|.+|+..+
T Consensus 13 ~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v 45 (52)
T d1faqa_ 13 KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSS
T ss_pred CCcCCccCCCccc-cCCCcCCCCChhhhhhhccc
Confidence 4679999998764 57999999999999999654
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=94.80 E-value=0.03 Score=38.41 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=35.2
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|.+....|.+ .| +....+++|.+.+. .+..+.++...+|
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~-------~~--i~~~~~~i~~~~~~---------------------~~~~~~~g~~tvP 52 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR-------AG--LAYNTVDISLDDEA---------------------RDYVMALGYVQAP 52 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH---------------------HHHHHHTTCBCCC
T ss_pred EEEEeCCCChhHHHHHHHHHH-------cC--CceEEEEccCCHHH---------------------HHHHHHhCCCCcC
Confidence 466789999999998776654 34 44555566644321 3444567888999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 53 ~i~ 55 (74)
T d1r7ha_ 53 VVE 55 (74)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.56 E-value=0.0074 Score=44.97 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=39.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|..+|||+|......|.++.-+ ...+.+.-+..+.+...++.+ +.+..
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~-----------~~~~~~~e~d~~~d~~~~~~~------------------l~~~~ 64 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFK-----------EGLLEFVDITATSDTNEIQDY------------------LQQLT 64 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBC-----------TTSEEEEEGGGSTTHHHHHHH------------------HHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHhCCc-----------cceeeeeecccccccHHHHHH------------------Hhhcc
Confidence 5578899999999766555443221 123555555555554433332 34445
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|...+|.+|+ +|+.+
T Consensus 65 g~~tvPqIfi---~g~~I 79 (105)
T d1ktea_ 65 GARTVPRVFI---GKECI 79 (105)
T ss_dssp SCCCSCEEEE---TTEEE
T ss_pred CCCcCcEEEE---CCEEE
Confidence 6788998865 56655
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.052 Score=37.41 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=34.6
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+||++|......|.+ .| +....++++.+.+. .+..+..|.+.+|
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~-------~~--i~y~~~~i~~~~~~---------------------~~~~~~~g~~tvP 52 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPEA---------------------AEALRAQGFRQLP 52 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH---------------------HHHHHHTTCCSSC
T ss_pred EEEEeCCCCccHHHHHHHHHh-------cC--ceeEEEeecCCHHH---------------------HHHHHhcCCCCCC
Confidence 456789999999998776644 34 44445555544221 3333556888999
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
.+++
T Consensus 53 ~i~i 56 (76)
T d1h75a_ 53 VVIA 56 (76)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8664
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=93.97 E-value=0.085 Score=36.01 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=36.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+.++||+|.+....|.+ . ++....+.+|.+.. ...+.+..
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~-------~---------~i~~~~~~v~~~~~--------------------~~~~~~~~ 50 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHD-------K---------GLSFEEIILGHDAT--------------------IVSVRAVS 50 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-------H---------TCCCEEEETTTTCC--------------------HHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c---------CCCeEEEEccCcHH--------------------HHHHHHHh
Confidence 456788999999986654443 2 34445555554321 23445566
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
+...+|.+++ +|+.+
T Consensus 51 ~~~tvP~i~i---~g~~I 65 (74)
T d1nm3a1 51 GRTTVPQVFI---GGKHI 65 (74)
T ss_dssp CCSSSCEEEE---TTEEE
T ss_pred CCccCCEEEE---CCEEE
Confidence 7889998754 46554
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.96 E-value=0.1 Score=36.03 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=44.0
Q ss_pred EEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCe
Q 015833 37 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC 116 (399)
Q Consensus 37 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~ 116 (399)
|..+++.|+.|.+.....+++.+++ |-+.++..| .|. .++. .|||.++|.
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~---gi~a~v~kv-----------------------~d~---~ei~-~ygVmstPa 53 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKEL---GIDAEFEKI-----------------------KEM---DQIL-EAGLTALPG 53 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHT---TCCEEEEEE-----------------------CSH---HHHH-HHTCSSSSC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHc---CCceEEEEe-----------------------CCH---HHHH-HcCCcCCCE
Confidence 4456899999999999988888775 334677655 133 6665 599999999
Q ss_pred EEEEcCCCCCCCeeec
Q 015833 117 LVVLQPYDDKDDATLH 132 (399)
Q Consensus 117 ~~lid~~~~~G~i~~~ 132 (399)
+++ ||+++..
T Consensus 54 lvI------dg~vv~~ 63 (77)
T d1iloa_ 54 LAV------DGELKIM 63 (77)
T ss_dssp EEE------TTEEEEC
T ss_pred EEE------CCEEEEE
Confidence 886 5666644
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=93.26 E-value=0.09 Score=36.65 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=37.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..+|||+|.+....|.+ . ++.+..+.++.+.+. ..++.+..
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~-------~---------~i~y~~~di~~~~~~-------------------~~~~~~~~ 47 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSS-------K---------GVSFQELPIDGNAAK-------------------REEMIKRS 47 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-------H---------TCCCEEEECTTCSHH-------------------HHHHHHHH
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------c---------CCCeEEEeccchHHH-------------------HHHHHHHh
Confidence 345778999999975544432 2 355666666655332 23455556
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|...+|.++ + +|+.+
T Consensus 48 g~~tvP~i~-i--~~~~I 62 (82)
T d1fova_ 48 GRTTVPQIF-I--DAQHI 62 (82)
T ss_dssp SSCCSCEEE-E--TTEEE
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 788999876 4 46654
|
| >d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Protein kinase c-gamma species: Rat (Rattus rattus) [TaxId: 10117]
Probab=93.04 E-value=0.06 Score=36.11 Aligned_cols=45 Identities=31% Similarity=0.664 Sum_probs=32.1
Q ss_pred ccceeeeecCCCCCCeecCCCCCCCCc---eeEEcCCCCCCCcCccccccC
Q 015833 345 RHELNLVSEGTGGGPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD 392 (399)
Q Consensus 345 ~~~~~~~~~~~~~~~~~c~~C~~~~~~---w~~~c~~c~~~~~~~~~~~~~ 392 (399)
+|..... ....+-+|+.|.+.=.+ ..|.|..|++-.|.+|+....
T Consensus 8 ~H~F~~~---~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~ 55 (66)
T d1tbna_ 8 KHKFRLH---SYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVP 55 (66)
T ss_dssp SCCEEEC---CSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTSC
T ss_pred CCceEEE---eCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhcccc
Confidence 4555442 22345689999876543 359999999999999997654
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.65 E-value=0.034 Score=41.13 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=35.3
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|......|.++ +-....+.+.-++.+.+... ....+.+..+...+|
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~----~~~~~~~~~~e~d~~~d~~~-------------------~~~~l~~~~g~~tvP 70 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQL----PFKEGLLEFVDITATSDTNE-------------------IQDYLQQLTGARTVP 70 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHS----CBCTTSEEEEEGGGSTTHHH-------------------HHHHHHHHHSCCCSC
T ss_pred EEEEECCCCchHHHHHHHHHHh----CCccceeeeeecccccccHH-------------------HHHHHhhccCCCcCc
Confidence 4678899999999977766542 21222355544433333221 223445556778899
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
.+++
T Consensus 71 qIfi 74 (105)
T d1ktea_ 71 RVFI 74 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.19 E-value=0.34 Score=36.33 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=47.0
Q ss_pred ccccCCCEEEEEEec-CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 27 VSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 27 l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
++.+++.+.++.|-. ..|+.|..+...|+++++. .+ .+.+..... +.....++
T Consensus 17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sd---ki~~~~~~~----------------------~~~e~~~~ 70 (119)
T d1a8la1 17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD---KLSYEIVDF----------------------DTPEGKEL 70 (119)
T ss_dssp GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT---TEEEEEEET----------------------TSHHHHHH
T ss_pred HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CC---CeEEEEecc----------------------CcchhhhH
Confidence 355666666666654 5799999887777766554 22 255543333 22233789
Q ss_pred HhhcCCCCcCeEEEEcC
Q 015833 106 NRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~ 122 (399)
++.|++...|++.+.+.
T Consensus 71 ~~~~~ver~Ps~~i~~~ 87 (119)
T d1a8la1 71 AKRYRIDRAPATTITQD 87 (119)
T ss_dssp HHHTTCCSSSEEEEEET
T ss_pred HHhhccccCceEEEecC
Confidence 99999999999998873
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=91.98 E-value=0.064 Score=37.80 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=27.5
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
+|.|..++||+|.+....|.++..++++ +.+..++++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~~----i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCCC----ceEEEEecC
Confidence 4678899999999988888887766643 556555443
|
| >d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Beta-chimaerin, middle domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.079 Score=34.97 Aligned_cols=36 Identities=31% Similarity=0.706 Sum_probs=28.6
Q ss_pred CCeecCCCCCCCC---ceeEEcCCCCCCCcCccccccCC
Q 015833 358 GPFICCDCDEQGS---GWAYQCLECGYEVHPKCVRAVDR 393 (399)
Q Consensus 358 ~~~~c~~C~~~~~---~w~~~c~~c~~~~~~~~~~~~~~ 393 (399)
.+-+|+.|.+.-. ...|.|.+|++-.|.+|......
T Consensus 14 ~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~~ 52 (62)
T d1xa6a3 14 GPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPN 52 (62)
T ss_dssp SCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTSCS
T ss_pred CCCCCcccCccccccccCeEEcCCCCchhhHHHHhhCCC
Confidence 4568999988643 35799999999999999876543
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=91.01 E-value=0.34 Score=36.82 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=46.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
++++++.|+... .........+.+++++|+++ +.++. +|.+. ....
T Consensus 23 ~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k----------i~Fv~--vd~~~---------------------~~~~ 68 (133)
T d2djka1 23 GIPLAYIFAETA-EERKELSDKLKPIAEAQRGV----------INFGT--IDAKA---------------------FGAH 68 (133)
T ss_dssp TSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT----------SEEEE--ECTTT---------------------TGGG
T ss_pred CCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc----------eEEEE--EeHHH---------------------hHHH
Confidence 567777777653 34566777888888888765 44444 45332 1445
Q ss_pred HHhCCC--CccceEEEECCCCcEEec
Q 015833 277 TKYFDV--QGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v--~~~P~~~lid~~G~i~~~ 300 (399)
.+.||+ ...|.+++++.++...+.
T Consensus 69 l~~~gl~~~~~P~~~i~~~~~~~~~~ 94 (133)
T d2djka1 69 AGNLNLKTDKFPAFAIQEVAKNQKFP 94 (133)
T ss_dssp TTTTTCCSSSSSEEEEECTTTCCBCC
T ss_pred HHHhcCCcccCCcEEEEEcCCCceec
Confidence 666777 568999999877665443
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=90.59 E-value=0.19 Score=34.16 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.6
Q ss_pred EEEEecCCCcccHhhHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~ 56 (399)
++.|+.++||+|.+....|.+
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~ 27 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHD 27 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 356789999999998776654
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.30 E-value=0.31 Score=33.45 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=42.8
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC
Q 015833 203 YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 282 (399)
Q Consensus 203 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v 282 (399)
..+++.|+.|.+.....+++.++.. -..++.-|. +. .++. .|||
T Consensus 5 kVlg~gC~~C~~~~~~v~~a~~e~g----------i~a~v~kv~---d~----------------------~ei~-~ygV 48 (77)
T d1iloa_ 5 QIYGTGCANCQMLEKNAREAVKELG----------IDAEFEKIK---EM----------------------DQIL-EAGL 48 (77)
T ss_dssp EEECSSSSTTHHHHHHHHHHHHHTT----------CCEEEEEEC---SH----------------------HHHH-HHTC
T ss_pred EEeCCCCccHHHHHHHHHHHHHHcC----------CceEEEEeC---CH----------------------HHHH-HcCC
Confidence 3448999999998888888776642 245665552 32 5565 4999
Q ss_pred CccceEEEECCCCcEEecc
Q 015833 283 QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 283 ~~~P~~~lid~~G~i~~~~ 301 (399)
.++|.+++ ||+++..+
T Consensus 49 mstPalvI---dg~vv~~G 64 (77)
T d1iloa_ 49 TALPGLAV---DGELKIMG 64 (77)
T ss_dssp SSSSCEEE---TTEEEECS
T ss_pred cCCCEEEE---CCEEEEEe
Confidence 99999854 68888763
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=89.92 E-value=0.12 Score=36.02 Aligned_cols=54 Identities=11% Similarity=0.250 Sum_probs=33.9
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
+..|..+|||+|.+....|.+ .+ +.+..++++.+ .....++.+..|...+|
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~-------~~--i~y~~~di~~~--------------------~~~~~~~~~~~g~~tvP 53 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSS-------KG--VSFQELPIDGN--------------------AAKREEMIKRSGRTTVP 53 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-------HT--CCCEEEECTTC--------------------SHHHHHHHHHHSSCCSC
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------cC--CCeEEEeccch--------------------HHHHHHHHHHhCCCCCC
Confidence 345778999999987765543 23 33444455433 22225666667888899
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 54 ~i~ 56 (82)
T d1fova_ 54 QIF 56 (82)
T ss_dssp EEE
T ss_pred eEE
Confidence 875
|
| >d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: Zinc finger ZZ-type-containing protein 3, ZZZ3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.066 Score=36.24 Aligned_cols=33 Identities=21% Similarity=0.703 Sum_probs=28.0
Q ss_pred CeecCCCCCCC-CceeEEcCCC----CCCCcCcccccc
Q 015833 359 PFICCDCDEQG-SGWAYQCLEC----GYEVHPKCVRAV 391 (399)
Q Consensus 359 ~~~c~~C~~~~-~~w~~~c~~c----~~~~~~~~~~~~ 391 (399)
.+.|+.|.+.. .+=+|+|.+| ||||=..|-...
T Consensus 14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~ 51 (69)
T d2fc7a1 14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL 51 (69)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCc
Confidence 37999999885 6679999999 899999997543
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.079 Score=43.77 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
.+++.++.|+.-+||||..+.|.|..+.+..+..+.++.++.+.+
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~ 156 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 156 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEEC
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEec
Confidence 578889999999999999999987644333332222355555443
|
| >d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Diacylglycerol kinase delta species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=0.37 Score=33.70 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=26.9
Q ss_pred CCeecCCCCCCCC----ceeEEcCCCCCCCcCcccccc
Q 015833 358 GPFICCDCDEQGS----GWAYQCLECGYEVHPKCVRAV 391 (399)
Q Consensus 358 ~~~~c~~C~~~~~----~w~~~c~~c~~~~~~~~~~~~ 391 (399)
..-.|+.|++.=. -..|+|..|++-.|.+|....
T Consensus 37 ~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~v 74 (84)
T d1r79a_ 37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCCCCcccCcccCCccccCcEecCcCCchhhhhhcCCC
Confidence 3569999987642 246999999999999998654
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=85.02 E-value=1.5 Score=29.59 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=30.9
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
+..|..++|+.|......|.+ ..+ +.+..|+++.+ .++.++|+.. +|
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~------~~~--~~~~~vdI~~d------------------------~~l~~~y~~~-IP 48 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ------ARA--GAFFSVFIDDD------------------------AALESAYGLR-VP 48 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH------TTC--CCEEEEECTTC------------------------HHHHHHHTTT-CS
T ss_pred EEEECCCCccHHHHHHHHHHh------ccC--CcEEEEEccCC------------------------HHHHHHhCCe-ee
Confidence 456789999999865443332 123 44555555533 6777888866 78
Q ss_pred eE
Q 015833 116 CL 117 (399)
Q Consensus 116 ~~ 117 (399)
.+
T Consensus 49 Vl 50 (75)
T d1ttza_ 49 VL 50 (75)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: RNA polymerase subunits family: RBP12 subunit of RNA polymerase II domain: RBP12 subunit of RNA polymerase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.45 E-value=0.22 Score=30.20 Aligned_cols=26 Identities=27% Similarity=0.770 Sum_probs=21.8
Q ss_pred CeecCCCC---CCCCceeEEcCCCCCCCc
Q 015833 359 PFICCDCD---EQGSGWAYQCLECGYEVH 384 (399)
Q Consensus 359 ~~~c~~C~---~~~~~w~~~c~~c~~~~~ 384 (399)
.|+|++|. ++.++=.-+|.+|++.+=
T Consensus 4 ~YiCgeCg~~~~l~~~d~irCreCG~RIl 32 (46)
T d1twfl_ 4 KYICAECSSKLSLSRTDAVRCKDCGHRIL 32 (46)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEcccCCCceEeCCCCcEEeccCCcEEE
Confidence 48999997 667777888999999873
|
| >d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: Zinc finger ZZ-type-containing protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.95 E-value=0.16 Score=35.75 Aligned_cols=29 Identities=31% Similarity=0.871 Sum_probs=24.7
Q ss_pred eecCCCCCC-CCceeEEcCCC-CCCCcCccc
Q 015833 360 FICCDCDEQ-GSGWAYQCLEC-GYEVHPKCV 388 (399)
Q Consensus 360 ~~c~~C~~~-~~~w~~~c~~c-~~~~~~~~~ 388 (399)
..|+.|++. =.|-+|+|..| ||||=..|-
T Consensus 25 v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~ 55 (85)
T d2dipa1 25 IPCNNCKQFPIEGKCYKCTECIEYHLCQECF 55 (85)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHH
T ss_pred eECCCCCCCCcCcceEEcCCCCCccchHHHH
Confidence 579999876 57789999999 899987774
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=82.09 E-value=3.9 Score=33.81 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=42.0
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC---cccccCCchhHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW---LALPFGDPTIKE 275 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~---~~~p~~~d~~~~ 275 (399)
.|+=.|.+.||..|..--..|.+|.+. +++-.+++.+|-- ...+| +..|...+..+.
T Consensus 7 aVVElFTSqgCssCPpAd~~L~~L~~~------------~~Vi~La~HVdYW--------d~lGw~D~fa~~~~t~RQ~~ 66 (225)
T d2axoa1 7 GVVELFTSQGCASCPPADEALRKMIQK------------GDVVGLSYHVDYW--------NYLGWTDSLASKENTERQYG 66 (225)
T ss_dssp CEEEEEECTTCTTCHHHHHHHHHHHHH------------TSSEEEEEECSTT--------CSSSSCCTTCCHHHHHHHHH
T ss_pred cEEEEeeCCCCCCCHHHHHHHHHhhCC------------CCEEEEEeccccc--------cccCCCCCCCCchhhHHHHH
Confidence 355556677999999987777777542 2578888888720 11122 122222233455
Q ss_pred HHHhCCCCccce
Q 015833 276 LTKYFDVQGIPC 287 (399)
Q Consensus 276 ~~~~~~v~~~P~ 287 (399)
.++.++...+||
T Consensus 67 Y~~~~g~~~vyT 78 (225)
T d2axoa1 67 YMRALGRNGVYT 78 (225)
T ss_dssp HHHHTTCSCCCS
T ss_pred HHHhcCCCCCCc
Confidence 677788887665
|
| >d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: CREB-binding protein, CBP species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.69 E-value=0.18 Score=31.85 Aligned_cols=29 Identities=21% Similarity=0.751 Sum_probs=23.1
Q ss_pred CeecCCCCCCCCceeEEcCCC-CCCCcCccc
Q 015833 359 PFICCDCDEQGSGWAYQCLEC-GYEVHPKCV 388 (399)
Q Consensus 359 ~~~c~~C~~~~~~w~~~c~~c-~~~~~~~~~ 388 (399)
.+.|+.|++.- +=+|+|..| ||||=..|-
T Consensus 6 ~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~ 35 (52)
T d1tota1 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCY 35 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHH
T ss_pred EEECcCCCCcC-CCceECCCCCCcccHHHHh
Confidence 57899998653 459999999 688877774
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.45 E-value=2.1 Score=31.87 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.|+++++.|+.+- ..-......+.+++++|+++ +.++.++.+ . ...
T Consensus 16 ~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgk----------i~Fv~~D~~--~---------------------~~~ 61 (125)
T d2b5ea3 16 SGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGL----------MNFVSIDAR--K---------------------FGR 61 (125)
T ss_dssp TTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTT----------CEEEEEEHH--H---------------------HTT
T ss_pred cCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCe----------eEEEEEchH--H---------------------hHH
Confidence 4778888888753 23345777788888888765 455555433 2 245
Q ss_pred HHHhCCCC-ccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQ-GIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~-~~P~~~lid~~G~i~~~ 300 (399)
..+.||+. ..|.+++++......+.
T Consensus 62 ~l~~fgl~e~~P~~~i~~~~~~~ky~ 87 (125)
T d2b5ea3 62 HAGNLNMKEQFPLFAIHDMTEDLKYG 87 (125)
T ss_dssp HHHHTTCCSCSSEEEEEETTTTEEEE
T ss_pred HHHHcCCCccCCcEEEEecccCcccc
Confidence 66778874 48999998766554443
|