Citrus Sinensis ID: 015840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHcccHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccEEEccccccc
Coil and Loop (DISEMBL)
myhhhqnqgksmhsssrmpipterhlflqggsgpgdsglvlstdakprlkwtpdLHERFIEAVNQlggadkatpKTVMKlmgipgltlYHLKSHLQKYRlsknlhgqanignnkivtvpgermpeanathmnnlsigpqpnkslhISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKelqgfcpqqpqanqptdcsmdscltscegsqkdqeihnggvrlrpyhgtptlepkeiveepmlQQTELKWRKdlkeskflssigkdrgpgelsigsgsfpagrfkasnedehfqdqtnkkpegaklenenllpeyrlpcfstkldlnahdhendvasgckqfdlngfswn
Flexible Loop (DISEMBL)
myhhhqnqgksmhsssRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNqlggadkatpKTVMKLMGIPGLTLYHLKSHLQKYRLSknlhgqanigNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKdqeihnggvrlrpyhgtptlepkeiveepmLQQTELKWRKDLKESKFlssigkdrgpgelsiGSGSFPAGRFKASNEDEHfqdqtnkkpegaklenenllpeYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Low Complexity Region (SEG)
MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Disordered region (IsUnstruct)
***********************************************RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTV*******************************IQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGF******************************************************************************************************************************LPEYRLPCFSTKLDLNAH*****VA*GCKQFD*******
Disordered Region (DISOPRED)
*************************************************KWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY********************************************************************************************************************************************************************************************************************************************************************************TKLDLN**D********C*QFDLNGFSW*
Disordered Region (DISEMBL)
*****************MPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ***********DSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAGRFKAS**********NKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Disordered Region (DISPRO)
**********************************************PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL**************************************SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG******************************************************************************************KEIVEEPMLQQTELKWRKDLKESKFLSSIG*************************************************EYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSW*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.383	0.427	0.588	4e-44
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.340	0.329	0.486	3e-32
Q700D9	255	Putative Myb family trans	no	no	0.140	0.219	0.607	4e-14
Q93WJ9	403	Transcription repressor K	no	no	0.140	0.138	0.571	7e-13
Q9C616	388	Probable transcription fa	no	no	0.140	0.144	0.571	1e-12
Q0J235	532	Probable transcription fa	no	no	0.142	0.107	0.561	2e-12
Q9FJV5	276	Probable transcription fa	no	no	0.160	0.231	0.538	3e-12
Q9ZWJ9	664	Two-component response re	no	no	0.135	0.081	0.545	5e-12
Q941I2	322	Probable transcription fa	no	no	0.140	0.173	0.553	7e-12
Q940D0	690	Two-component response re	no	no	0.135	0.078	0.545	1e-11

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  179 bits (453), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/163 (58%), Positives = 122/163 (74%), Gaps = 10/163 (6%)

Query: 35  GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94
           GDSGLVL+TD KPRL+WT +LHERF++AV QLGG DKATPKT+M++MG+ GLTLYHLKSH
Sbjct: 23  GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82

Query: 95  LQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQI 154
           LQK+RL K  H +   G++   T  G R   A+A  +           S +++E   MQ+
Sbjct: 83  LQKFRLGKQPHKE--YGDHS--TKEGSR---ASAMDIQRNVASSSGMMSRNMNE---MQM 132

Query: 155 EVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNL 197
           EVQRRLHEQLEVQRHLQLRIEAQGKY+Q++LE+A +TL  +N+
Sbjct: 133 EVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENM 175

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/146 (48%), Positives = 102/146 (69%), Gaps = 10/146 (6%)

Query: 45  AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104
           +K R++WTP+LHE F+EAVNQLGG+++ATPK V+KL+  PGLT+YH+KSHLQKYR ++  
Sbjct: 230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARY- 288

Query: 105 HGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQL 164
                    +   V GE   E   T + ++        S+ I++ +++Q+EVQ+RLHEQL
Sbjct: 289 -------KPETSEVTGEPQ-EKKMTSIEDIK-SLDMKTSVEITQALRLQMEVQKRLHEQL 339

Query: 165 EVQRHLQLRIEAQGKYLQAVLEKAQE 190
           E+QR LQL+IE QG+YLQ + EK Q+
Sbjct: 340 EIQRSLQLQIEKQGRYLQMMFEKQQK 365

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           PRL+WTP+LH  F+ AV+ LGG  KATPK V+K+M + GLT+ H+KSHLQ YR S+
Sbjct: 24  PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSR 79

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           PR++WT  LH RF+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ YR  K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           PR++WT  LH RF+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ YR  K
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 269

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103
           PR++WT  LH RF+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ YR  K+
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKS 381

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 38  GLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQK 97
           GL  S  A PR++WT  LH  F+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ 
Sbjct: 98  GLKRSIRA-PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 156

Query: 98  YRLSK 102
           YR  K
Sbjct: 157 YRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 46  KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
           KPR+ W+ +LH++F+ AVNQLG  DKA PK ++++M +PGLT  ++ SHLQKYR+
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           PR++WT  LH  F+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ YR  K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK 220

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 46  KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
           KPR+ W+ +LH++F+ AVNQLG  +KA PK +++LM +PGLT  ++ SHLQKYR+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
224125896	427	predicted protein [Populus trichocarpa]	0.997	0.932	0.75	1e-175
255568946	419	transcription factor, putative [Ricinus	0.997	0.949	0.719	1e-166
224144770	421	predicted protein [Populus trichocarpa]	0.997	0.945	0.718	1e-165
225441650	418	PREDICTED: uncharacterized protein LOC10	0.987	0.942	0.704	1e-158
225441648	412	PREDICTED: uncharacterized protein LOC10	0.972	0.941	0.690	1e-152
356543598	420	PREDICTED: uncharacterized protein LOC10	0.989	0.940	0.639	1e-142
356547128	400	PREDICTED: uncharacterized protein LOC10	0.924	0.922	0.645	1e-137
356542754	405	PREDICTED: uncharacterized protein LOC10	0.977	0.962	0.623	1e-131
356542756	399	PREDICTED: uncharacterized protein LOC10	0.962	0.962	0.611	1e-127
186509740	394	myb family transcription factor [Arabido	0.952	0.964	0.605	1e-126

>gi|224125896|ref|XP_002319702.1| predicted protein [Populus trichocarpa] gi|222858078|gb|EEE95625.1| predicted protein [Populus trichocarpa]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/428 (75%), Positives = 348/428 (81%), Gaps = 30/428 (7%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHHQ+QGKS+HSSSRM IP ERHLFLQGG+GPGDSGLVLSTDAKPRLKWTPDLHERFI
Sbjct: 1   MYHHHQHQGKSIHSSSRMAIPPERHLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKI--VTV 118
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIG++KI  V V
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGSSKIGTVAV 120

Query: 119 PGERMPEANATHMN--NLSIGPQPNK-----SLHISETIQMQIEVQRRLHEQLEVQRHLQ 171
            G+RMPEANATH+N  NLSIG QPNK     SLH SE +QMQIEVQRRLHEQLEVQRHLQ
Sbjct: 121 VGDRMPEANATHININNLSIGSQPNKILKSRSLHFSEALQMQIEVQRRLHEQLEVQRHLQ 180

Query: 172 LRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKEL 231
           LRIEAQGKYLQAVLEKAQETLGRQNLGT GLEAAKVQLSELVSKVSTQCLNSTFS+L +L
Sbjct: 181 LRIEAQGKYLQAVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLNSTFSELNDL 240

Query: 232 QGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPM 291
           QG CPQQ    QP DCSMDSCLTSCEGSQK+QEIHN G+ LRP +    LEPKEI EE  
Sbjct: 241 QGLCPQQTPPTQPNDCSMDSCLTSCEGSQKEQEIHNIGMGLRPCNSNALLEPKEIAEEHA 300

Query: 292 LQQTELKWRKDLKESK-FLSSIG---------KDRGPGELSIGSG----------SFPAG 331
           LQQTELKW + L+++K FL+SIG          +R   +LSIG G          SF  G
Sbjct: 301 LQQTELKWGEYLRDNKMFLTSIGHETERRTFSAERSCSDLSIGVGLQGEKGNINSSFAEG 360

Query: 332 RFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQF 391
           RFK  +ED+ FQDQTNK+ E  K E+E + P YRL  F+TKLDLN+HD E D AS CKQ 
Sbjct: 361 RFKGMSEDDSFQDQTNKRAESVKYEDEKMSPGYRLSYFTTKLDLNSHD-EIDAASSCKQL 419

Query: 392 DLNGFSWN 399
           DLNGFSWN
Sbjct: 420 DLNGFSWN 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568946|ref|XP_002525443.1| transcription factor, putative [Ricinus communis] gi|223535256|gb|EEF36933.1| transcription factor, putative [Ricinus communis]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 302/420 (71%), Positives = 335/420 (79%), Gaps = 22/420 (5%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHHQ+QGKS+HSSSRM IP ERHLFLQGG+GPGDSGLVLSTDAKPRLKWT DLHE FI
Sbjct: 1   MYHHHQHQGKSVHSSSRMSIPPERHLFLQGGNGPGDSGLVLSTDAKPRLKWTSDLHEHFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVT--V 118
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQAN G+NKI T  V
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSGSNKIGTGAV 120

Query: 119 PGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQG 178
            G+R+ E N TH+NNLS+G Q NK LHI E +QMQIEVQRRLHEQLEVQRHLQLRIEAQG
Sbjct: 121 VGDRISETNVTHINNLSMGTQTNKGLHIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQG 180

Query: 179 KYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ 238
           KYLQ+VLEKAQETLGRQNLG+ GLEAAKVQLSELVSKVSTQCLNS FS+LKELQG C QQ
Sbjct: 181 KYLQSVLEKAQETLGRQNLGSIGLEAAKVQLSELVSKVSTQCLNSAFSELKELQGLCHQQ 240

Query: 239 PQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELK 298
            Q   PTDCSMDSCLTSCEGSQK+QEIHN G+ LRPY+G   LE K+I E  +L QTELK
Sbjct: 241 TQTAPPTDCSMDSCLTSCEGSQKEQEIHNTGMGLRPYNGNALLESKDITEGHVLHQTELK 300

Query: 299 WRKDLKESK-FLSSIGK---------DRGPGELSIGSG---------SFPAGRFKASNED 339
           W +DLK++K FLS +G          +R   +LS+  G         SF  GR+K  N+ 
Sbjct: 301 WSEDLKDNKMFLSPLGNNAARRNFAAERSTSDLSMTVGLQGENGNASSFSEGRYKDRNDG 360

Query: 340 EHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN 399
           + F DQTNK  +  KL   ++   YRLP F+TKLDLN+H+ E D AS CKQ DLNGFSWN
Sbjct: 361 DSFPDQTNKSLDSVKLPKGDVSQGYRLPYFATKLDLNSHE-EIDAASSCKQLDLNGFSWN 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144770|ref|XP_002325408.1| predicted protein [Populus trichocarpa] gi|222862283|gb|EEE99789.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 303/422 (71%), Positives = 335/422 (79%), Gaps = 24/422 (5%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MY HHQ+QGK++HSSSR  IP ERHLFLQ G+GPGDSGLVLSTDAKPRLKWT DLHERFI
Sbjct: 1   MYQHHQHQGKNIHSSSRNSIPPERHLFLQVGNGPGDSGLVLSTDAKPRLKWTTDLHERFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNK--IVTV 118
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQAN G+NK   V V
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSGSNKSGTVAV 120

Query: 119 PGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQG 178
            G+RMPE NATH+NNLSIG Q NKSLH SE +Q+QIEVQRRLHEQLEVQRHLQLRIEAQG
Sbjct: 121 VGDRMPEVNATHINNLSIGSQTNKSLHFSEALQVQIEVQRRLHEQLEVQRHLQLRIEAQG 180

Query: 179 KYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ 238
           KYLQ+VLEKAQETLGRQNLGT GLEAAKVQLSELVSKVS++CLNS FS+LK+LQG CP  
Sbjct: 181 KYLQSVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSSKCLNSAFSELKDLQGLCPPL 240

Query: 239 PQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELK 298
            Q   P DCSMDSCLTS EGSQK+QEIHN G+ LRPY+G   LEPK I  E  LQQTELK
Sbjct: 241 TQPTHPNDCSMDSCLTSIEGSQKEQEIHNTGMGLRPYNGNALLEPKVIAGEHALQQTELK 300

Query: 299 W-RKDLKESK-FLSSIGKD---------RGPGELSIGSG----------SFPAGRFKASN 337
           W  +D +++K FLSS+  D         R    LSIG G          SF   RFK  +
Sbjct: 301 WPGEDQRDNKMFLSSMRNDTERRTFSAERSCSNLSIGVGLQGERGNVSSSFAEARFKGRS 360

Query: 338 EDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFS 397
           ED+ FQD+TN++ +  KLENE L P YRL  ++TKLDLN+H  E D ASGC+Q DLNGFS
Sbjct: 361 EDDSFQDKTNRRIDAIKLENEKLSPGYRLSYYATKLDLNSHG-EIDAASGCRQLDLNGFS 419

Query: 398 WN 399
           WN
Sbjct: 420 WN 421

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441650|ref|XP_002282324.1| PREDICTED: uncharacterized protein LOC100248614 isoform 1 [Vitis vinifera]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/423 (70%), Positives = 331/423 (78%), Gaps = 29/423 (6%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHH +QGK++H SSR PI  ER+LFLQGG+GPGDSGLVLSTDAKPRLKWTPDLHERFI
Sbjct: 1   MYHHHHHQGKNIHPSSRTPITPERNLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPG 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQAN   +K  TV G
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSATSK--TVVG 118

Query: 121 ERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKY 180
           ERMPEAN   M++ +IG Q NKSLH+SET+QM IE QRRLHEQLEVQRHLQLRIEAQGKY
Sbjct: 119 ERMPEANGALMSSPNIGNQTNKSLHLSETLQM-IEAQRRLHEQLEVQRHLQLRIEAQGKY 177

Query: 181 LQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQ 240
           LQAVLEKAQETLGRQNLG  GLEAAKVQLSELVSKVSTQCL+S FS+LKELQ  CPQQ Q
Sbjct: 178 LQAVLEKAQETLGRQNLGAVGLEAAKVQLSELVSKVSTQCLHSAFSELKELQSLCPQQTQ 237

Query: 241 ANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPY-HGTPTLEPKEIVEEPMLQQTELKW 299
             QPTDCSMDSCLTSCEGSQ++QEIHN G+ LRPY +G+  LE K+  E P LQ T LKW
Sbjct: 238 T-QPTDCSMDSCLTSCEGSQREQEIHNCGMGLRPYTNGSTPLEAKDTAEPPGLQHTVLKW 296

Query: 300 RKDLKESK-FLSSIGKD---------RGPGELSI----------GSGSFPAGRFKASNED 339
            +D KE++ F+SS+ +D         R   +LS+          GS S+  GRFK   E 
Sbjct: 297 CEDTKENRQFISSMQRDAERRTMTAERSNSDLSMRIGLQGEKGNGSNSYSEGRFKGRAEA 356

Query: 340 EHFQDQTNKKPE---GAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGF 396
           ++F D+TN   +     K ENE +   YRLPCF  KLDLNAHD ENDV   CKQFDLNGF
Sbjct: 357 DNFVDRTNHGADSGNSVKQENEKMSHGYRLPCFGAKLDLNAHD-ENDVTLSCKQFDLNGF 415

Query: 397 SWN 399
           SWN
Sbjct: 416 SWN 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441648|ref|XP_002282336.1| PREDICTED: uncharacterized protein LOC100248614 isoform 2 [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/423 (69%), Positives = 325/423 (76%), Gaps = 35/423 (8%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHH +QGK++H SSR PI  ER+LFLQGG+GPGDSGLVLSTDAKPRLKWTPDLHERFI
Sbjct: 1   MYHHHHHQGKNIHPSSRTPITPERNLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPG 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQAN   +K  TV G
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSATSK--TVVG 118

Query: 121 ERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKY 180
           ERMPEAN   M++ +IG Q NKSLH+SET+QM IE QRRLHEQLE      LRIEAQGKY
Sbjct: 119 ERMPEANGALMSSPNIGNQTNKSLHLSETLQM-IEAQRRLHEQLE------LRIEAQGKY 171

Query: 181 LQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQ 240
           LQAVLEKAQETLGRQNLG  GLEAAKVQLSELVSKVSTQCL+S FS+LKELQ  CPQQ Q
Sbjct: 172 LQAVLEKAQETLGRQNLGAVGLEAAKVQLSELVSKVSTQCLHSAFSELKELQSLCPQQTQ 231

Query: 241 ANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPY-HGTPTLEPKEIVEEPMLQQTELKW 299
             QPTDCSMDSCLTSCEGSQ++QEIHN G+ LRPY +G+  LE K+  E P LQ T LKW
Sbjct: 232 T-QPTDCSMDSCLTSCEGSQREQEIHNCGMGLRPYTNGSTPLEAKDTAEPPGLQHTVLKW 290

Query: 300 RKDLKESK-FLSSIGKD---------RGPGELSI----------GSGSFPAGRFKASNED 339
            +D KE++ F+SS+ +D         R   +LS+          GS S+  GRFK   E 
Sbjct: 291 CEDTKENRQFISSMQRDAERRTMTAERSNSDLSMRIGLQGEKGNGSNSYSEGRFKGRAEA 350

Query: 340 EHFQDQTNKKPE---GAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGF 396
           ++F D+TN   +     K ENE +   YRLPCF  KLDLNAHD ENDV   CKQFDLNGF
Sbjct: 351 DNFVDRTNHGADSGNSVKQENEKMSHGYRLPCFGAKLDLNAHD-ENDVTLSCKQFDLNGF 409

Query: 397 SWN 399
           SWN
Sbjct: 410 SWN 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543598|ref|XP_003540247.1| PREDICTED: uncharacterized protein LOC100810396 [Glycine max]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/424 (63%), Positives = 312/424 (73%), Gaps = 29/424 (6%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHHQ+QGK++HSSSRMPIP+ERH+FLQ G+G GDSGLVLSTDAKPRLKWTPDLH RFI
Sbjct: 1   MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVP- 119
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQ+N    KI T   
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTYKITTSAS 120

Query: 120 -GERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQG 178
            GER+ E N THMN LS+GPQ NK LHISE +QMQIEVQRRL+EQLEVQRHLQLRIEAQG
Sbjct: 121 TGERLSETNGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQG 180

Query: 179 KYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ 238
           KYLQ+VLEKAQETLGRQNLG  G+EAAKVQLSELVSKVS+QCLNS F++ K+LQGF PQQ
Sbjct: 181 KYLQSVLEKAQETLGRQNLGVVGIEAAKVQLSELVSKVSSQCLNSAFTEPKDLQGFFPQQ 240

Query: 239 PQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEP-MLQQTEL 297
            Q N P DCSMDSCLTS + SQK+QEI NG   LR ++    +E KE  E P  L+  EL
Sbjct: 241 TQTNPPNDCSMDSCLTSSDRSQKEQEIQNG---LRHFNSHVFMEHKEATEAPNNLRNPEL 297

Query: 298 KWRKDLKESKFLSSIGKDR---------GPGELSIGSG----------SFPAGRFKASNE 338
           KW +D K++ FL+ + K+           P  LS+  G           +P      S  
Sbjct: 298 KWCEDGKKNTFLAPLSKNEERRNYAAESSPNNLSMSIGLERETENGINLYPERLITESQS 357

Query: 339 DEHFQDQTNKKPEGAKLENENLLPEYRLPC---FSTKLDLNAHDHENDVASGCKQFDLNG 395
           D  FQ +   KPE  K  +E +  +YRLP     + +LDLN H  +N+ A+ CKQ DLN 
Sbjct: 358 DGEFQHRNRIKPETLKPVDEKVSQDYRLPASYFAAARLDLNTHG-DNEAATTCKQLDLNR 416

Query: 396 FSWN 399
           FSW+
Sbjct: 417 FSWS 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547128|ref|XP_003541969.1| PREDICTED: uncharacterized protein LOC100799064 [Glycine max]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/403 (64%), Positives = 297/403 (73%), Gaps = 34/403 (8%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHHQ+QGK++HSSSRMPIP+ERH+FLQ G+G GDSGLVLSTDAKPRLKWTPDLH RFI
Sbjct: 1   MYHHHQHQGKNIHSSSRMPIPSERHMFLQAGNGSGDSGLVLSTDAKPRLKWTPDLHARFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVT--V 118
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQ+N   +KI T   
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTSAT 120

Query: 119 PGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQG 178
            GER+ E N THMN LS+GPQ NK LHISE +QMQIEVQRRL+EQLEVQRHLQLRIEAQG
Sbjct: 121 TGERLSETNGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQG 180

Query: 179 KYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ 238
           KYLQ+VLEKAQETLGRQNLG  GLEAAKVQLSELVSKVS+QC NS F++LK+LQGFCPQQ
Sbjct: 181 KYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCFNSAFTELKDLQGFCPQQ 240

Query: 239 PQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEP-MLQQTEL 297
           PQ N P DCSMDSC+TSC+ SQK+QEI NG   LR +     +E KE  E P  L+  E+
Sbjct: 241 PQTNPPNDCSMDSCITSCDRSQKEQEIQNG---LRHFSSHMFMEQKEAKEAPNNLRNPEI 297

Query: 298 KWRKDLKESKFLSSIGKDR---------GPGELSI----------GSGSFPAGRFKASNE 338
           KW  D K++ FL+ + K+           P  LS+          GS  +P      S  
Sbjct: 298 KWYDDGKKNTFLAPLSKNEERRNYAAECSPSNLSMSIGLERETENGSSMYPERLITESPS 357

Query: 339 DEHFQDQTNKKPEGAKLENENLLPEYRLPC---FSTKLDLNAH 378
           D         KP+  K  +E +  +YRLP     + +LDLN H
Sbjct: 358 DGRI------KPQTMKPVDEKVSQDYRLPTSYFAAARLDLNTH 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542754|ref|XP_003539830.1| PREDICTED: uncharacterized protein LOC100805237 isoform 1 [Glycine max]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/414 (62%), Positives = 302/414 (72%), Gaps = 24/414 (5%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MY H Q+QGK++HSSSRMPIP+ER +FLQ G+G GDSGLVLSTDAKPRLKWTPDLH RFI
Sbjct: 1   MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPG 120
           EAV QLGGADKATPKTVMKL+GIPGLTLYHLKSHLQKYRLSK+LHGQ+N   +KI    G
Sbjct: 61  EAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKITINSG 120

Query: 121 ----ERMPEANATHMNNLSIGPQP-NKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIE 175
               ER+ E N THMN+L++ PQ  NK L+ISE + MQIE QRRL+EQLEVQR LQLRIE
Sbjct: 121 AATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNEQLEVQRLLQLRIE 180

Query: 176 AQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSD-LKELQGF 234
           AQGKYLQAVLEKAQETLGRQNLG  GLEA K+QLSELVSKVS+QCLNS FSD LKE+QGF
Sbjct: 181 AQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLNSAFSDRLKEIQGF 240

Query: 235 CP-QQPQANQP--TDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPM 291
            P QQ Q NQP   DCSMDSCLTSCEGSQK+QEI NGG+ LRP++    +E KE++E P 
Sbjct: 241 SPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPN 300

Query: 292 LQ---QTELKWRKDLKESKFLSSI---GKDRGPGELSIGSGSFPAGRFKASNEDEHFQDQ 345
           L     T+L W   +K++ FL+ +      R P  LS+  G       +   E+      
Sbjct: 301 LNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIG------LEGETENGSTIRT 354

Query: 346 TNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN 399
            + KP   K+  +  LP       ++KLDL   D++ D  + CKQ DLNGFSWN
Sbjct: 355 ESVKPVADKVSQDYGLPSNYFA--ASKLDLTTEDNK-DTKTSCKQLDLNGFSWN 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542756|ref|XP_003539831.1| PREDICTED: uncharacterized protein LOC100805237 isoform 2 [Glycine max]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/414 (61%), Positives = 297/414 (71%), Gaps = 30/414 (7%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MY H Q+QGK++HSSSRMPIP+ER +FLQ G+G GDSGLVLSTDAKPRLKWTPDLH RFI
Sbjct: 1   MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPG 120
           EAV QLGGADKATPKTVMKL+GIPGLTLYHLKSHLQKYRLSK+LHGQ+N   +KI    G
Sbjct: 61  EAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKITINSG 120

Query: 121 ----ERMPEANATHMNNLSIGPQP-NKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIE 175
               ER+ E N THMN+L++ PQ  NK L+ISE + MQIE QRRL+EQLE      LRIE
Sbjct: 121 AATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNEQLE------LRIE 174

Query: 176 AQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSD-LKELQGF 234
           AQGKYLQAVLEKAQETLGRQNLG  GLEA K+QLSELVSKVS+QCLNS FSD LKE+QGF
Sbjct: 175 AQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLNSAFSDRLKEIQGF 234

Query: 235 CP-QQPQANQP--TDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPM 291
            P QQ Q NQP   DCSMDSCLTSCEGSQK+QEI NGG+ LRP++    +E KE++E P 
Sbjct: 235 SPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPN 294

Query: 292 LQ---QTELKWRKDLKESKFLSSI---GKDRGPGELSIGSGSFPAGRFKASNEDEHFQDQ 345
           L     T+L W   +K++ FL+ +      R P  LS+  G       +   E+      
Sbjct: 295 LNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIG------LEGETENGSTIRT 348

Query: 346 TNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN 399
            + KP   K+  +  LP       ++KLDL   D++ D  + CKQ DLNGFSWN
Sbjct: 349 ESVKPVADKVSQDYGLPSNYFA--ASKLDLTTEDNK-DTKTSCKQLDLNGFSWN 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186509740|ref|NP_001118567.1| myb family transcription factor [Arabidopsis thaliana] gi|6223653|gb|AAF05867.1|AC011698_18 transfactor-like [Arabidopsis thaliana] gi|332640508|gb|AEE74029.1| myb family transcription factor [Arabidopsis thaliana]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/413 (60%), Positives = 299/413 (72%), Gaps = 33/413 (7%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MY+ +Q+QGK++ SSSRM I +ERH FL+G S PGDSGL+LSTDAKPRLKWTPDLHERFI
Sbjct: 1   MYYQNQHQGKNILSSSRMHITSERHPFLRGNS-PGDSGLILSTDAKPRLKWTPDLHERFI 59

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKI--VTV 118
           EAVNQLGGADKATPKT+MK+MGIPGLTLYHLKSHLQKYRLSKNL+GQAN   NKI  +T+
Sbjct: 60  EAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANNSFNKIGIMTM 119

Query: 119 PGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQG 178
             E+ P+A+     NLSIGPQPNK+  I E +QMQIEVQRRLHEQLEVQRHLQLRIEAQG
Sbjct: 120 MEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQG 179

Query: 179 KYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ 238
           KYLQ+VLEKAQETLGRQNLG AG+EAAKVQLSELVSKVS +  NS+F + KELQ  C QQ
Sbjct: 180 KYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSKVSAEYPNSSFLEPKELQNLCSQQ 239

Query: 239 PQANQPTDCSMDSCLTSCEGSQKDQE-IHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTEL 297
            Q N P DCS++SCLTS EG+QK+ + + N  + LR Y G  T E KEI+EEP+ Q+ EL
Sbjct: 240 MQTNYPPDCSLESCLTSSEGTQKNSKMLENNRLGLRTYIGDSTSEQKEIMEEPLFQRMEL 299

Query: 298 KWRKDLKESKFLSSI---------GKDRGPGELSIGSG--SFPAGRFKASNEDEHFQDQT 346
            W + L+ + +LS++           +R PG LSIG G     +   + +NED   + + 
Sbjct: 300 TWTEGLRGNPYLSTMVSEAEQRISYSERSPGRLSIGVGLHGHKSQHQQGNNEDHKLETRN 359

Query: 347 NKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN 399
            K  +                  +T+LDLN H  EN   +  KQFDLNGFSWN
Sbjct: 360 RKGMDS-----------------TTELDLNTHV-ENYCTTRTKQFDLNGFSWN 394

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.957	0.969	0.618	6e-119
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.967	0.960	0.592	1.2e-115
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.573	0.679	0.489	2.4e-51
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.606	0.820	0.478	1.7e-50
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.566	0.758	0.477	4.1e-49
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.403	0.449	0.573	3.9e-44
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.406	0.613	0.486	1.3e-34
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.365	0.510	0.503	7.4e-34
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.370	0.629	0.503	7.4e-34
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.456	0.444	0.405	4.1e-33

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 1171 (417.3 bits), Expect = 6.0e-119, P = 6.0e-119
 Identities = 254/411 (61%), Positives = 301/411 (73%)

Query:     1 MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
             MY+ +Q+QGK++ SSSRM I +ERH FL+G S PGDSGL+LSTDAKPRLKWTPDLHERFI
Sbjct:     1 MYYQNQHQGKNILSSSRMHITSERHPFLRGNS-PGDSGLILSTDAKPRLKWTPDLHERFI 59

Query:    61 EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKI--VTV 118
             EAVNQLGGADKATPKT+MK+MGIPGLTLYHLKSHLQKYRLSKNL+GQAN   NKI  +T+
Sbjct:    60 EAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANNSFNKIGIMTM 119

Query:   119 PGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQG 178
               E+ P+A+     NLSIGPQPNK+  I E +QMQIEVQRRLHEQLEVQRHLQLRIEAQG
Sbjct:   120 MEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQG 179

Query:   179 KYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ 238
             KYLQ+VLEKAQETLGRQNLG AG+EAAKVQLSELVSKVS +  NS+F + KELQ  C QQ
Sbjct:   180 KYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSKVSAEYPNSSFLEPKELQNLCSQQ 239

Query:   239 PQANQPTDCSMDSCLTSCEGSQKDQE-IHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTEL 297
              Q N P DCS++SCLTS EG+QK+ + + N  + LR Y G  T E KEI+EEP+ Q+ EL
Sbjct:   240 MQTNYPPDCSLESCLTSSEGTQKNSKMLENNRLGLRTYIGDSTSEQKEIMEEPLFQRMEL 299

Query:   298 KWRKDLKESKFLSSIGKD---------RGPGELSIGSGSFPAGRFKASNEDEHFQDQTNK 348
              W + L+ + +LS++  +         R PG LSIG G          ++ +H   Q N 
Sbjct:   300 TWTEGLRGNPYLSTMVSEAEQRISYSERSPGRLSIGVGLH-------GHKSQH--QQGNN 350

Query:   349 KPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN 399
               E  KLE  N     +    +T+LDLN H  EN   +  KQFDLNGFSWN
Sbjct:   351 --EDHKLETRNR----KGMDSTTELDLNTHV-ENYCTTRTKQFDLNGFSWN 394

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
 Identities = 246/415 (59%), Positives = 299/415 (72%)

Query:     1 MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
             MY+H+Q+QGKS+ SSSRMPI +ERH FL+G +G GDSGL+LSTDAKPRLKWTPDLHERF+
Sbjct:     1 MYYHNQHQGKSILSSSRMPISSERHPFLRG-NGTGDSGLILSTDAKPRLKWTPDLHERFV 59

Query:    61 EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNK--IVTV 118
             EAVNQLGG DKATPKT+MK+MGIPGLTLYHLKSHLQKYRLSKNL+GQAN   NK  ++T+
Sbjct:    60 EAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANSSLNKTSVMTM 119

Query:   119 PGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQG 178
               E  PE + +H  +LSIGPQP+ +L IS+ +QMQIEVQRRLHEQLEVQRHLQLRIEAQG
Sbjct:   120 VEENPPEVDESHSESLSIGPQPSMNLPISDALQMQIEVQRRLHEQLEVQRHLQLRIEAQG 179

Query:   179 KYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ 238
             KYLQ++LEKAQETLGRQNLG AG+EA K QLSELVSKVS    +S+F + KELQ    QQ
Sbjct:   180 KYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSKVSADYPDSSFLEPKELQNLHHQQ 239

Query:   239 PQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELK 298
              Q   P + S+DSCLTS EG+QK  ++ +  + LR Y G  T E KEI+EEP   + EL 
Sbjct:   240 MQKTYPPNSSLDSCLTSSEGTQKAPKMLDNRLGLRTYIGDSTSEQKEIMEEPFFHRMELT 299

Query:   299 WRKD--LKESK---FLSSIGKD---------RGPGELSIGSGSFPAGRFKASNEDEHFQD 344
             W ++  L+E+    +LS++  +         R PG LSIG G     R ++SN  E+ ++
Sbjct:   300 WAEEESLRENHNRPYLSTMVNNAEPRISSSRRSPGRLSIGVG-LHEHRGRSSNNSEYTEE 358

Query:   345 QTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN 399
             + N+  E  KLE              T LDLN HD EN   +  KQFDLNGFSWN
Sbjct:   359 RFNENNEDCKLETHT----------RTALDLNTHD-ENYGTTRPKQFDLNGFSWN 402

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 118/241 (48%), Positives = 160/241 (66%)

Query:    39 LVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98
             LVLSTDAKPRLKWT DLH +FIEAVNQLGG +KATPK +MK+M IPGLTLYHLKSHLQKY
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    99 RLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSI-----GPQPNKSLHISETIQMQ 153
             RL K++    N       +   E   + ++  +   S+      P  ++ L I+E +QMQ
Sbjct:    87 RLGKSMKFDDNKLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRGLQITEALQMQ 146

Query:   154 IEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELV 213
             +EVQ++LHEQ+EVQRHLQ++IEAQGKYLQ+VL KAQ+TL   +    G++ A+ +LS L 
Sbjct:   147 MEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLGMDFARTELSRLA 206

Query:   214 SKVSTQCLNSTFSDL----KELQGFCPQQPQANQPTD---CSMDSCLTSCEGSQKDQEIH 266
             S V+  C +++FS+L    +E +GF   +   N+      CS++S LTS E S+   +  
Sbjct:   207 SMVNRGCPSTSFSELTQVEEEEEGFLWYKKPENRGISQLRCSVESSLTSSETSETKLDTD 266

Query:   267 N 267
             N
Sbjct:   267 N 267

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 122/255 (47%), Positives = 166/255 (65%)

Query:    12 MHSSSRMPIPTERHL--FLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGA 69
             M+S+ R  +P +  L  +  G + P D+ LVL+TD KPRL+WT +LHERF++AV QLGG 
Sbjct:     1 MYSAIRSSLPLDGSLGDYSDGTNLPIDACLVLTTDPKPRLRWTSELHERFVDAVTQLGGP 60

Query:    70 DKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPGERMPEANAT 129
             DKATPKT+M+ MG+ GLTLYHLKSHLQK+RL +    + +I N+K V+   E   +  ++
Sbjct:    61 DKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQ-SCKESIDNSKDVSCVAESQ-DTGSS 118

Query:   130 HMNNLSIGPQP-NKSLHISETIQMQIEVQRRLHEQLE---VQRHLQLRIEAQGKYLQAVL 185
               ++L +  Q  N+S  ++E ++ Q+EVQRRLHEQLE   VQR LQLRIEAQGKYLQ++L
Sbjct:   119 STSSLRLAAQEQNESYQVTEALRAQMEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSIL 178

Query:   186 EKAQETLGRQNLGTAGLEAAKVQLSELVSKVST----QCLNSTFSDLKELQGFCPQQPQA 241
             EKA + +  Q +  AGLEAA+ +LSEL  K S     Q   STF   K +     +   A
Sbjct:   179 EKACKAIEEQAVAFAGLEAAREELSELAIKASITNGCQGTTSTFDTTKMMIPSLSELAVA 238

Query:   242 -NQPTDCSMDSCLTS 255
                  +CS +S LTS
Sbjct:   239 IEHKNNCSAESSLTS 253

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 115/241 (47%), Positives = 157/241 (65%)

Query:    28 LQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLT 87
             L G + PGD+ LVL+TD KPRL+WT +LHERF++AV QLGG DKATPKT+M+ MG+ GLT
Sbjct:    23 LDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLT 82

Query:    88 LYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHIS 147
             LYHLKSHLQK+RL +   G+ +  N+K  +  GE     +++  +      + N+   ++
Sbjct:    83 LYHLKSHLQKFRLGRQA-GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVT 141

Query:   148 ETIQMQIEVQRRLHEQLE---VQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEA 204
             E ++ Q+EVQRRLH+QLE   VQR LQLRIEAQGKYLQ++LEKA +    Q    AGLEA
Sbjct:   142 EALRAQMEVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAFDEQAATFAGLEA 201

Query:   205 AKVQLSELVSKVS--TQCLNSTFSDLKELQGFCPQQPQA--------NQPTDCSMDSCLT 254
             A+ +LSEL  KVS  +Q  +  + D  ++    P   +         N  T+CS++S LT
Sbjct:   202 AREELSELAIKVSNSSQGTSVPYFDATKMM-MMPSLSELAVAIDNKNNITTNCSVESSLT 260

Query:   255 S 255
             S
Sbjct:   261 S 261

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 98/171 (57%), Positives = 125/171 (73%)

Query:    35 GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94
             GDSGLVL+TD KPRL+WT +LHERF++AV QLGG DKATPKT+M++MG+ GLTLYHLKSH
Sbjct:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82

Query:    95 LQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQI 154
             LQK+RL K  H +   G++   T  G R   A     N  S     +++++     +MQ+
Sbjct:    83 LQKFRLGKQPHKE--YGDHS--TKEGSRA-SAMDIQRNVASSSGMMSRNMN-----EMQM 132

Query:   155 EVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAA 205
             EVQRRLHEQLEVQRHLQLRIEAQGKY+Q++LE+A +TL  +N+  A   AA
Sbjct:   133 EVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENMAAATAAAA 183

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 89/183 (48%), Positives = 118/183 (64%)

Query:    40 VLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
             +++ D KPRL+WT DLH+RF++AV +LGGADKATPK+V+KLMG+ GLTLYHLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:   100 LSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSL---H--------ISE 148
             L     GQ   G  +  T   +    ++  H +N S G   N S    H         +E
Sbjct:    61 L-----GQQQ-GKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAE 114

Query:   149 TIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQ 208
              ++ Q++ Q+R  EQLEVQ+ LQ+R+EAQGKYL  +LEKAQ++L     G AG E  K Q
Sbjct:   115 AMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLP---CGNAG-ETDKGQ 170

Query:   209 LSE 211
              S+
Sbjct:   171 FSD 173

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 80/159 (50%), Positives = 112/159 (70%)

Query:    36 DSGLVLSTDA-KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94
             D+G   S+ A K RL+WT +LHERF++AV QLGG D+ATPK V+++MG+ GLT+YH+KSH
Sbjct:     4 DNGGPNSSHASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSH 63

Query:    95 LQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQI 154
             LQKYRL+K L   ++          G++  +  +  M  LS G   +  + I+E +++Q+
Sbjct:    64 LQKYRLAKYLPDSSS---------EGKKTDKKESGDM--LS-GLDGSSGMQITEALKLQM 111

Query:   155 EVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG 193
             EVQ+RLHEQLEVQR LQLRIEAQGKYL+ ++E+ Q   G
Sbjct:   112 EVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSG 150

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 79/157 (50%), Positives = 109/157 (69%)

Query:    37 SGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQ 96
             SGLVL+TD KPRL+WT +LHERF++AV  LGG +KATPKT+M++MG+ GLTLYHLKSHLQ
Sbjct:    14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

Query:    97 KYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKS-LHISETI-QMQI 154
             K+RL K  H + +  N+ I       + + N   M +L        S L I   + +MQ+
Sbjct:    74 KFRLGKQPHKEHS-QNHSIC------IRDTNRASMLDLRRNAVFTTSPLIIGRNMNEMQM 126

Query:   155 EVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQET 191
             EVQRR+ E++ ++R +  RI AQGKY++++LEKA ET
Sbjct:   127 EVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACET 163

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 79/195 (40%), Positives = 121/195 (62%)

Query:    46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLH 105
             K R++WTP+LHE F+EAVN LGG+++ATPK V+K+M + GLT+YH+KSHLQKYR ++   
Sbjct:   225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRP 284

Query:   106 GQANIGNNKIVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLE 165
               +  G+ +    P E        H+ +L +       + I+E +++Q+EVQ++LHEQLE
Sbjct:   285 EPSETGSPERKLTPLE--------HITSLDL----KGGIGITEALRLQMEVQKQLHEQLE 332

Query:   166 VQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTF 225
             +QR+LQLRIE QGKYLQ + EK    L +    T+   AAK +  +  +  S +      
Sbjct:   333 IQRNLQLRIEEQGKYLQMMFEKQNSGLTKGTASTSD-SAAKSEQEDKKTADSKEVPEEET 391

Query:   226 SDLKELQGFCPQQPQ 240
                +EL+   P++P+
Sbjct:   392 RKCEELESPQPKRPK 406

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691
3rd Layer	3.4.24.57	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130592 hypothetical protein (427 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	3e-22
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	7e-21
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	2e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-08

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 88.5 bits (220), Expect = 3e-22
 Identities = 37/51 (72%), Positives = 46/51 (90%)

Query: 143 SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG 193
            + I+E +++Q+EVQRRLHEQLEVQRHLQ+RIEAQGKYLQ +LEKAQ+TL 
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 85.1 bits (211), Expect = 7e-21
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 46  KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           KPR+ WT DLH+RF++AV +LGG D ATPK +++LM + GLT   + SHLQKYRL +
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 62.5 bits (151), Expect = 2e-10
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 46  KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
           K ++ WTP+LH RF+ AV QLG  +KA P  +++LMG+  LT +++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 48.3 bits (116), Expect = 7e-08
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
          R  WTP+  E  IEAV + G  +      + K +  PG T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.92
PLN03162	526	golden-2 like transcription factor; Provisional	99.87
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.84
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.18
smart00426	68	TEA TEA domain.	89.3

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.92  E-value=1.3e-25  Score=169.68  Aligned_cols=51  Identities=75%  Similarity=1.086  Sum_probs=49.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhc
Q 015840          143 SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG  193 (399)
Q Consensus       143 ~~qItEALqmQmEVQRRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La  193 (399)
                      +++|+|||++||||||||||||||||+||+|||||||||++|||||+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999874

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.87  E-value=5.4e-23  Score=205.58  Aligned_cols=61  Identities=46%  Similarity=0.829  Sum_probs=58.2

Q ss_pred             CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015840           43 TDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL  104 (399)
Q Consensus        43 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~~  104 (399)
                      ..+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus       232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~  292 (526)
T PLN03162        232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH  292 (526)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence            4679999999999999999999999 799999999999999999999999999999999764

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.84  E-value=3.2e-21  Score=147.80  Aligned_cols=56  Identities=59%  Similarity=0.996  Sum_probs=54.4

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhh
Q 015840           46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS  101 (399)
Q Consensus        46 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~  101 (399)
                      |+|++||+|+|.+||+||+.||+.+.||||.|+++|++++||+.+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.18  E-value=0.00087  Score=48.67  Aligned_cols=48  Identities=33%  Similarity=0.436  Sum_probs=41.2

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhh
Q 015840           48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR   99 (399)
Q Consensus        48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYR   99 (399)
                      |-.||+|=+..|++||.++|. +  .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992 1  5889999998 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=89.30  E-value=0.42  Score=38.98  Aligned_cols=46  Identities=28%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCCch-HHhhh---cC-----------CCCc--cHHHHHHhhhh
Q 015840           50 KWTPDLHERFIEAVNQLGGADKATPK-TVMKL---MG-----------IPGL--TLYHLKSHLQK   97 (399)
Q Consensus        50 rWT~ELH~rFV~AV~qLGG~dkAtPK-~Il~l---M~-----------v~gL--T~~hVkSHLQK   97 (399)
                      .|.++|-..|++|+...-  ...+-| .+...   .|           ..|.  |..+|.||+|.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999999875  333332 22211   11           2444  78889999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	399
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		4e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 42  STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101
           +   KPR+ WT +LH +F+ AV+ LG  ++A PK ++ LM +  LT  ++ SHLQK+R++
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 94.6 bits (235), Expect = 2e-24
 Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 42  STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101
           +   KPR+ WT +LH +F+ AV+ LG  ++A PK ++ LM +  LT  ++ SHLQK+R++
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 102 K 102
            
Sbjct: 60  L 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 50/398 (12%), Positives = 110/398 (27%), Gaps = 135/398 (33%)

Query: 23  ERHLFLQGGSGPGDSGLVLST--DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKL 80
            +++ + G  G G + + L      K        +  +    +  L   +  +P+TV+++
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYK--------VQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 81  MGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIVTVPGERMPEANATHMNNLSIGPQP 140
           +      L +        ++  N   +++  +N  + +       +    +  L      
Sbjct: 202 L----QKLLY--------QIDPNWTSRSDHSSNIKLRI------HSIQAELRRLLKSKPY 243

Query: 141 NKSLHI------SETIQM-----QIEVQRR---LHEQLEVQRHLQLRIEAQGKYLQAVLE 186
              L +      ++         +I +  R   + + L       + ++    +    L 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD----HHSMTLT 299

Query: 187 KAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTD 246
              E                     L+ K     L+    DL       P++     P  
Sbjct: 300 PD-EVK------------------SLLLK----YLDCRPQDL-------PREVLTTNPRR 329

Query: 247 CSM---------------------------DSCLTSCEGSQ-----KDQEIHNGGVRLRP 274
            S+                           +S L   E ++         +      + P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-P 388

Query: 275 YHGTPTLE---PKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAG 331
              T  L       I  + M+   +L  +         S + K      +SI S      
Sbjct: 389 ---TILLSLIWFDVIKSDVMVVVNKLH-KY--------SLVEKQPKESTISIPSIYL--- 433

Query: 332 RFKASNEDE---H--FQDQTNKKPEGAKLENENLLPEY 364
             K   E+E   H    D  N        ++++L+P Y
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIP---KTFDSDDLIPPY 468

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	89.83
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	87.11
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	86.53
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	84.21
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	81.3

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=9.9e-29  Score=192.77  Aligned_cols=62  Identities=40%  Similarity=0.785  Sum_probs=58.7

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015840           42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL  104 (399)
Q Consensus        42 s~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~~  104 (399)
                      ++.+|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..+.
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            46789999999999999999999999 799999999999999999999999999999998653

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=89.83  E-value=1  Score=35.64  Aligned_cols=47  Identities=17%  Similarity=0.175  Sum_probs=39.0

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840           46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY   98 (399)
Q Consensus        46 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY   98 (399)
                      ..+-.||+|=+.+|++||...|+    .=+.|-+.|+  +=|..+++.|.++|
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            34678999999999999999993    2356777664  79999999999987

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.11  E-value=1.1  Score=34.10  Aligned_cols=55  Identities=13%  Similarity=0.244  Sum_probs=42.0

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCCch---HHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840           45 AKPRLKWTPDLHERFIEAVNQLGGADKATPK---TVMKLMGIPGLTLYHLKSHLQKYRLSK  102 (399)
Q Consensus        45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK---~Il~lM~v~gLT~~hVkSHLQKYRl~~  102 (399)
                      ...+-.||+|=+++|++||..+| .+...|.   .|-+.|  +|=|..+|+.|.++|-...
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            34456899999999999999998 3332233   455554  6899999999999997654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=86.53  E-value=1.6  Score=33.27  Aligned_cols=52  Identities=27%  Similarity=0.374  Sum_probs=41.7

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840           45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK  102 (399)
Q Consensus        45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~  102 (399)
                      ...+-.||+|=++.|+++|..+|-    .=+.|-+.  ++|=|-.+|+.|.++|-..+
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            345678999999999999999992    34556665  47899999999999986554

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=84.21  E-value=0.95  Score=36.87  Aligned_cols=58  Identities=24%  Similarity=0.332  Sum_probs=37.9

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhh---hc-C-----------C--CCccHHHHHHhhhhhhhhccc
Q 015840           45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMK---LM-G-----------I--PGLTLYHLKSHLQKYRLSKNL  104 (399)
Q Consensus        45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~---lM-~-----------v--~gLT~~hVkSHLQKYRl~~~~  104 (399)
                      ++..-+|.++|-..|++|+...- +. -+-|-+|.   .| |           .  +-=|+.+|.||||.-+..+..
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence            34566899999999999999875 21 12222221   11 1           1  233788999999988776543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=81.30  E-value=1.6  Score=32.16  Aligned_cols=51  Identities=24%  Similarity=0.209  Sum_probs=39.8

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhh
Q 015840           45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL  100 (399)
Q Consensus        45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl  100 (399)
                      .-.+-.||+|=.+++++||..+| .  ..=+.|-+.|  +|=|-.+++.|.++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            34466899999999999999999 1  1235566666  68899999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	1e-22

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.4 bits (219), Expect = 1e-22
 Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 42  STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101
           +   KPR+ WT +LH +F+ AV+ LG  ++A PK ++ LM +  LT  ++ SHLQK+R++
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 102 K 102
            
Sbjct: 60  L 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	90.12
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	84.1

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=3.3e-26  Score=176.50  Aligned_cols=61  Identities=41%  Similarity=0.791  Sum_probs=57.6

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhcc
Q 015840           42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN  103 (399)
Q Consensus        42 s~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~  103 (399)
                      |..+|||++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999985 8999999999999999999999999999999864

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.47  Score=33.64  Aligned_cols=49  Identities=27%  Similarity=0.408  Sum_probs=39.9

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840           48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK  102 (399)
Q Consensus        48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~  102 (399)
                      ..+||+|=...|++||...|.    .=..|-+.|  ++=|..+|++|.++|-...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999993    344566655  5789999999999886654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.10  E-value=0.93  Score=30.74  Aligned_cols=44  Identities=27%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840           50 KWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY   98 (399)
Q Consensus        50 rWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY   98 (399)
                      .||++=..+|++||...| .  ..=+.|-+.|+  |=|..+++.|.++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999998 2  12355666665  66999999999887