Citrus Sinensis ID: 015882

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MSNELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTAPVSELPIDTTSGFWIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMKRANCWSNNTLGDLEASSI
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccHHHccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHcHHccccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcHHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHccccHHHHccccccccHHHHHHHcccHHHHHHHHcccccHccccccccHHHHHHHcccHHHHHHHHHHHHccccHHHccccccccccHHHHHHHcccHHHHHHHHHccccccEEEcccccccccHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHHHHcccccccEcccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
MSNELIELAKKDkvqekdstqnqngctsmhrapvegdgemihclgkldpqtgsvvednglttplhraavngdtgMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLlegsssdiiqidsknnqgqTALDIckansqdsvSNEIGSILERAAARkqtapvselpidttsgfwipieTKNVILMVLGMIATAFFAatcdlpnsfvkgnhpqgelnnhpqgqkfdakdvisgklPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMKRancwsnntlgdleassi
Flexible Loop (DISEMBL)
MSNELIELakkdkvqekdstqnqngctsmHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAArkqtapvselpidttsgfwIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMKRANCwsnntlgdleassi
Low Complexity Region (SEG)
MSNELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAlnklivivnlllEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTAPVSELPIDTTSGFWIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMKRANCWSNNTLGDLEASSI
Disordered region (IsUnstruct)
***************************************MIHCLGKLDP*TGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQI*******************************************ELPIDTTSGFWIPIETKNVILMVLGMIATAFFAATCDLPNSFVK******************AKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMKRANCWSNNTL********
Disordered Region (DISOPRED)
MSNELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERA**************************KNVILMVLGMIATAFFAATCDLPNSFVKGN************QKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRF*************************
Disordered Region (DISEMBL)
MSNELIELAKKD*************CTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAA********SELPIDTTSGFWIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMKRANCWSNNTLGDLEASSI
Disordered Region (DISPRO)
*SNELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK****VSELPIDTTSGFWIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNN*PQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMKR*****************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTAPVSELPIDTTSGFWIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMKRANCWSNNTLGDLEASSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.370	0.282	0.276	3e-07
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.393	0.295	0.287	2e-06
Q8WXD9	1431	Caskin-1 OS=Homo sapiens	yes	no	0.443	0.123	0.251	7e-06
Q8VHK2	1430	Caskin-1 OS=Rattus norveg	yes	no	0.443	0.123	0.246	3e-05
B2RXR6	993	Serine/threonine-protein	no	no	0.390	0.157	0.309	3e-05
Q5F478	990	Serine/threonine-protein	no	no	0.390	0.157	0.315	3e-05
Q6P9K8	1431	Caskin-1 OS=Mus musculus	yes	no	0.443	0.123	0.246	3e-05
Q8N8A2	993	Serine/threonine-protein	no	no	0.390	0.157	0.309	3e-05
O00522	736	Krev interaction trapped	no	no	0.368	0.199	0.279	6e-05
F1REV3	740	Krev interaction trapped	no	no	0.368	0.198	0.273	0.0003

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI 79
           T + +  T++H A  +G GE++  L        ++   NG  T LH AA NG T +++++
Sbjct: 120 TFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNG-KTALHSAARNGHTVIVKKL 178

Query: 80  ACSES--LAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL 137
              ++  + ++    +TAL +AVK    +   +L+E         L N+ D +GN+ LH+
Sbjct: 179 IEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGS-----LINSADNKGNTPLHI 233

Query: 138 AALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK 176
           A       IV  +L+      + +   N  G+TALDI +
Sbjct: 234 AVRKNRAEIVQTVLKYCEVSRVAV---NKSGETALDIAE 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 17/174 (9%)

Query: 29  MHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAK 87
           ++ A V+   E+++ +  +DP    +V  NG  T LH A   G  G++R + A  E  A 
Sbjct: 132 LYAAAVQDHLEIVNAMLDVDPSCAMIVRKNG-KTSLHTA---GRYGLLRIVKALIEKDAA 187

Query: 88  LT----SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKL 143
           +        +TAL +AVK   ++    +VEE  + +   + N  D++GN+ LH+A     
Sbjct: 188 IVGVKDKKGQTALHMAVKGRSLE----VVEEILQADYT-ILNERDRKGNTALHIATRKAR 242

Query: 144 IVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR 197
             I +LLL  ++   I++++ NNQ +TA+D+         + EI   L  A A+
Sbjct: 243 PQITSLLLTFTA---IEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAK 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q8WXD9|CSKI1_HUMAN Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 95/243 (39%), Gaps = 66/243 (27%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
           Q+ +G +++H A + G+ E+I  L  L+ Q    ++DN    PLH AA  G    ++ + 
Sbjct: 45  QDPDGFSALHHAALNGNTELISLL--LEAQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVL 102

Query: 81  CSESLAKLTSD-AETALILAVKSSQIDAFKILVE--------------------ETKRHN 119
            + S   + SD     L LA +    D  ++L++                    E  R  
Sbjct: 103 KAGSAVNIPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVG 162

Query: 120 REHLF---------------NATDKEGNSLLHLAALNKLIVIVNLLLEG----------- 153
              L                +ATD  G S LHLAA N  I I+ LLL+            
Sbjct: 163 VVQLLLSSNMCAALLEPRPGDATDPNGTSPLHLAAKNGHIDIIRLLLQAGIDINRQTKSG 222

Query: 154 ---------SSSDIIQ--IDS------KNNQGQTALDICKANSQDSVSNEIGSILERAAA 196
                      +++++  +DS      +N   QTALDI    +    S EI  +L  A+A
Sbjct: 223 TALHEAALCGKTEVVRLLLDSGINAHVRNTYSQTALDIVHQFTTSQASREIKQLLREASA 282

Query: 197 RKQ 199
             Q
Sbjct: 283 ALQ 285

May link the scaffolding protein CASK to downstream intracellular effectors.

Homo sapiens (taxid: 9606)

>sp|Q8VHK2|CSKI1_RAT Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 66/243 (27%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
           Q+ +G +++H A + G+ E+I  L  L+ Q    ++DN    PLH AA  G    ++ + 
Sbjct: 45  QDPDGFSALHHAALNGNTELISLL--LEAQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVL 102

Query: 81  CSESLAKLTSD-AETALILAVKSSQIDAFKILVE--------------------ETKRHN 119
            + S   + SD     L LA +    D  ++L++                    E  R  
Sbjct: 103 KAGSAVNVPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNPCIVDNSGKTPLDLACEFGRVG 162

Query: 120 REHLF---------------NATDKEGNSLLHLAALNKLIVIVNLLLEG----------- 153
              L                + TD  G S LHLAA N  I I+ LLL+            
Sbjct: 163 VVQLLLSSNMCAALLEPRPGDTTDPNGTSPLHLAAKNGHIDIIRLLLQAGIDINRQTKSG 222

Query: 154 ---------SSSDIIQ--IDS------KNNQGQTALDICKANSQDSVSNEIGSILERAAA 196
                      +++++  +DS      +N   QTALDI    +    S EI  +L  A+A
Sbjct: 223 TALHEAALCGKTEVVRLLLDSGINAQVRNTYSQTALDIVHQFTTSQASKEIKQLLREASA 282

Query: 197 RKQ 199
             Q
Sbjct: 283 ALQ 285

May link the scaffolding protein CASK to downstream intracellular effectors.

Rattus norvegicus (taxid: 10116)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 15/171 (8%)

Query: 19  STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSV-VEDNGLTTPLHRAAVNGDTGMIR 77
           + +++N  T +H   V    + + C   + P   SV V D G  T LH AA+NG   M+ 
Sbjct: 101 NARDKNWQTPLH---VAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHMEMVN 157

Query: 78  EI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLH 136
            + A   ++         AL  A     +D   +L+     H  E      DK+G + LH
Sbjct: 158 LLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLI----NHGAE--VTCKDKKGYTPLH 211

Query: 137 LAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEI 187
            AA N  I +V  LL       ++ID  N  G TAL I   N QD+V NE+
Sbjct: 212 AAASNGQISVVKHLLNLG----VEIDEINVYGNTALHIACYNGQDAVVNEL 258

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 76/171 (44%), Gaps = 15/171 (8%)

Query: 19  STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSV-VEDNGLTTPLHRAAVNGDTGMIR 77
           + +++N  T +H   V    + + C   + P   SV V D G  T LH AA+NG   M+ 
Sbjct: 101 NARDKNWQTPLH---VAAANKALKCAEIIIPMLSSVNVSDRGGRTALHHAALNGHVEMVN 157

Query: 78  EI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLH 136
            + A   ++         AL  A     ++   +L+     H  E      DK+G + LH
Sbjct: 158 LLLAKGANINAFDKKDRRALHWAAYMGHLEVVALLI----NHGAE--VTCKDKKGYTPLH 211

Query: 137 LAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEI 187
            AA N  I IV  LL       ++ID  N  G TAL I   N QDSV NE+
Sbjct: 212 AAASNGQINIVKHLLNLG----VEIDEMNIYGNTALHIACYNGQDSVVNEL 258

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q6P9K8|CSKI1_MOUSE Caskin-1 OS=Mus musculus GN=Caskin1 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 66/243 (27%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
           Q+ +G +++H A + G+ E+I  L  L+ Q    ++DN    PLH AA  G    ++ + 
Sbjct: 45  QDPDGFSALHHAALNGNTELISLL--LEAQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVL 102

Query: 81  CSESLAKLTSD-AETALILAVKSSQIDAFKILVE--------------------ETKRHN 119
            + S   + SD     L LA +    D  ++L++                    E  R  
Sbjct: 103 KAGSAVNVPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVG 162

Query: 120 REHLF---------------NATDKEGNSLLHLAALNKLIVIVNLLLEG----------- 153
              L                + TD  G S LHLAA N  I I+ LLL+            
Sbjct: 163 VVQLLLSSNMCAALLEPRPGDTTDPNGTSPLHLAAKNGHIDIIRLLLQAGIDINRQTKSG 222

Query: 154 ---------SSSDIIQ--IDS------KNNQGQTALDICKANSQDSVSNEIGSILERAAA 196
                      +++++  +DS      +N   QTALDI    +    S EI  +L  A+A
Sbjct: 223 TALHEAALCGKTEVVRLLLDSGINAQVRNTYSQTALDIVHQFTTSQASKEIKQLLREASA 282

Query: 197 RKQ 199
             Q
Sbjct: 283 ALQ 285

May link the scaffolding protein CASK to downstream intracellular effectors.

Mus musculus (taxid: 10090)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 15/171 (8%)

Query: 19  STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSV-VEDNGLTTPLHRAAVNGDTGMIR 77
           + +++N  T +H   V    + + C   + P   SV V D G  T LH AA+NG   M+ 
Sbjct: 101 NARDKNWQTPLH---VAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVN 157

Query: 78  EI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLH 136
            + A   ++         AL  A     +D   +L+     H  E      DK+G + LH
Sbjct: 158 LLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLI----NHGAE--VTCKDKKGYTPLH 211

Query: 137 LAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEI 187
            AA N  I +V  LL       ++ID  N  G TAL I   N QD+V NE+
Sbjct: 212 AAASNGQINVVKHLLNLG----VEIDEINVYGNTALHIACYNGQDAVVNEL 258

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|O00522|KRIT1_HUMAN Krev interaction trapped protein 1 OS=Homo sapiens GN=KRIT1 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 14/161 (8%)

Query: 63  PLHRAAVNGDTGMI-REIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNRE 121
           PLHR+A  GD+ ++ R ++   S+ +L SD    +  A    +++A +IL+E+ K +   
Sbjct: 291 PLHRSACEGDSELLSRLLSERFSVNQLDSDHWAPIHYACWYGKVEATRILLEKGKCNP-- 348

Query: 122 HLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQD 181
              N  + + +S LH AA      IV +LL    +D    D    QG++ L+IC+ N Q+
Sbjct: 349 ---NLLNGQLSSPLHFAAGGGHAEIVQILLNHPETDRHITDQ---QGRSPLNICEENKQN 402

Query: 182 SVSNEIGSILERAAARKQTAPVSELPIDTTSGFWIPIETKN 222
           +   E   +L+ A  +    P  ++ I    G +  +E K+
Sbjct: 403 NWE-EAAKLLKEAINK----PYEKVRIYRMDGSYRSVELKH 438

Component of the CCM signaling pathway which is a crucial regulator of heart and vessel formation and integrity (By similarity). Negative regulator of angiogenesis. Inhibits endothelial proliferation, apoptosis, migration, lumen formation and sprouting angiogenesis in primary endothelial cells. Promotes AKT phosphorylation in a NOTCH-dependent and independent manner, and inhibits EKR1/2 phosphorylation indirectly through activation of the DELTA-NOTCH cascade. Acts in concert with CDH5 to establish and maintain correct endothelial cell polarity and vascular lumen and these effects are mediated by recruitment and activation of the Par polarity complex and RAP1B. Required for the localization of phosphorylated PRKCZ, PARD3, TIAM1 and RAP1B to the cell junction. Plays an important role in the maintenance of the intracellular reactive oxygen species (ROS) homeostasis to prevent oxidative cellular damage. Regulates the homeostasis of intracellular ROS through an antioxidant pathway involving FOXO1 and SOD2. Facilitates the down-regulation of cyclin-D1 (CCND1) levels required for cell transition from proliferative growth to quiescence by preventing the accumulation of intracellular ROS through the modulation of FOXO1 and SOD2 levels.

Homo sapiens (taxid: 9606)

>sp|F1REV3|KRIT1_DANRE Krev interaction trapped protein 1 OS=Danio rerio GN=krit1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 14/161 (8%)

Query: 63  PLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNRE 121
           PLHR+A  GDT ++ + +    S+ +L SD    +  A    +++A K+L+E  K +   
Sbjct: 288 PLHRSACEGDTELLSKLLDGGFSVKQLDSDHWAPIHYACWHGKVEATKLLLE--KGNCNP 345

Query: 122 HLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQD 181
           +L N    + +S LH AA+     IV LLL+      I    ++ Q ++ L +C+ N Q+
Sbjct: 346 NLLNG---QLSSPLHFAAIGGHAEIVQLLLQHPE---IDRHIEDQQKRSPLQVCEENKQN 399

Query: 182 SVSNEIGSILERAAARKQTAPVSELPIDTTSGFWIPIETKN 222
           +   E  ++L++A+ +    P  ++ I    G +  +E K+
Sbjct: 400 NWE-ETVNLLQQASNK----PYEKVRIYRMDGSYRSVELKH 435

Component of the CCM signaling pathway which is a crucial regulator of heart and vessel formation and integrity. Negative regulator of angiogenesis. Inhibits endothelial proliferation, apoptosis, migration, lumen formation and sprouting angiogenesis in primary endothelial cells. Plays an important role in the maintenance of the intracellular reactive oxygen species (ROS) homeostasis to prevent oxidative cellular damage. Facilitates the down-regulation of cyclin-D1 (CCND1) levels required for cell transition from proliferative growth to quiescence by preventing the accumulation of intracellular ROS.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
255539875	430	ankyrin repeat-containing protein, putat	0.827	0.767	0.365	2e-48
255539879	315	protein binding protein, putative [Ricin	0.593	0.752	0.393	1e-39
224136414	459	predicted protein [Populus trichocarpa]	0.847	0.736	0.263	3e-22
359490025	450	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.802	0.711	0.275	7e-22
225447366	462	PREDICTED: ankyrin repeat-containing pro	0.734	0.634	0.286	8e-20
297739323	371	unnamed protein product [Vitis vinifera]	0.621	0.668	0.299	2e-18
296081857	470	unnamed protein product [Vitis vinifera]	0.639	0.542	0.307	9e-18
449453053	476	PREDICTED: ankyrin repeat-containing pro	0.704	0.590	0.267	2e-17
359476356	601	PREDICTED: ankyrin repeat-containing pro	0.443	0.294	0.354	8e-16
147765315	580	hypothetical protein VITISV_020094 [Viti	0.443	0.305	0.349	4e-15

>gi|255539875|ref|XP_002511002.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223550117|gb|EEF51604.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 198/356 (55%), Gaps = 26/356 (7%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI- 79
           + Q G T++H A   GD  ++  L KLD +     +D     PL  A   G T +I  + 
Sbjct: 73  RYQEGYTALHLACSRGDLPLVELLLKLDSEL-CFEKDKFSMIPLQTAISFGYTEVISTLI 131

Query: 80  -ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLA 138
            A  ES+ KLT   ET   LA K  Q  AF+ L+EE K+  +EHL +  D++GN++LH+A
Sbjct: 132 AARPESVRKLTPQRETLFHLAAKHHQSSAFEALLEEVKKLKQEHLLHRKDRQGNNVLHIA 191

Query: 139 ALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK 198
           A NKLI IV LLL    + ++++++ N +  TALD+   NS+D  + +IG IL  A   +
Sbjct: 192 ASNKLIGIVKLLLPADRA-MVRVNTLNKKRLTALDVYYQNSKDISTRDIGRILCEAGGLE 250

Query: 199 QTAPVSELPIDTTSGFWIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNN 258
             +    LP+      W  +ETKNVIL+VLG+I  A F   C LP SFV+G+       N
Sbjct: 251 GRS----LPMRAYIR-WT-LETKNVILVVLGIITGAAFTTVCSLPKSFVEGS-------N 297

Query: 259 HPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICV 318
             +G ++   DV+ G LP + YLM+FN+A  +  + AI++L+W L  R ++LF  I + +
Sbjct: 298 SIEGAEYHVTDVLFGGLPHIFYLMVFNTAILIVCVGAIVVLLWSLPFRPVVLFVTISVGI 357

Query: 319 VYVMLVDEVTPKFSVSVGKFSISSMALM---------WSLVAALSLSGISVLSMWG 365
           VY +LV+++ PKFS ++G   I S  L+         +  +A  + S +  L+ WG
Sbjct: 358 VYCLLVNDIMPKFSFTIGNHRIFSFPLVALFAVAFICFGAIAYYAFSCLCRLTKWG 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539879|ref|XP_002511004.1| protein binding protein, putative [Ricinus communis] gi|223550119|gb|EEF51606.1| protein binding protein, putative [Ricinus communis]

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/264 (39%), Positives = 152/264 (57%), Gaps = 27/264 (10%)

Query: 80  ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
           +C ES+AK     ETAL +A+KS Q   F++LVEE K+  +E + N  D EGN++LH+AA
Sbjct: 55  SCKESIAKENLQNETALHVALKSHQCRVFEVLVEEIKKLKQEEILNRKDDEGNTVLHIAA 114

Query: 140 LNKLIVIVNLLLEG-------SSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILE 192
             KL  IV LLL         +S  ++++++ N +G+ ALD+   N +D  S  IG IL 
Sbjct: 115 KYKLTEIVKLLLPSDCSTSTFTSRAVMRVNTLNRKGEIALDVYHQNGRDITSRGIGLILY 174

Query: 193 RAAA-------RKQTAPVSELPIDTTSGFWIP---IETKNVILMVLGMIATAFFAATCDL 242
            A A       + +T    + P+    G   P   +ET+NV+L+VL MIA A F  TC++
Sbjct: 175 EAGAVEGRLVRQIETQESLQSPLQDRDGIGRPGWSLETRNVLLVVLVMIAGAAFGMTCNI 234

Query: 243 PNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWR 302
           P  F+K   P            F A DVISG+LP V YL++ N+AGF+ +M  II+LV  
Sbjct: 235 PAVFLK-EKPSA---------IFSASDVISGRLPGVFYLLVLNTAGFVMSMFTIIVLVSS 284

Query: 303 LKLRTILLFFVICICVVYVMLVDE 326
           L   T+LLF VI + +VY ++V++
Sbjct: 285 LPFWTVLLFLVITVFIVYFLVVEQ 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136414|ref|XP_002326854.1| predicted protein [Populus trichocarpa] gi|222835169|gb|EEE73604.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 182/395 (46%), Gaps = 57/395 (14%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-- 79
           NQ+G + +H A   G  E++  L ++      +   +G  TPLH AA+ G   +++E+  
Sbjct: 67  NQDGFSPVHIASSNGHVELVRELLRVGYDICLLKGKDG-KTPLHLAAMKGRVDIVKELVC 125

Query: 80  ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
           AC +S+ ++T   ET L +AVKS+Q +A K+L+EE K+ +   + N  DK+GN+++HLA 
Sbjct: 126 ACPQSVKEVTICGETVLHVAVKSNQAEAVKVLLEEIKKLDMMEIVNWKDKDGNTIMHLAT 185

Query: 140 LNKLIVIVNLLLEGSSSDI-IQIDSKNNQGQTALDICKANSQDSVSNEIGSILE---RAA 195
           L K    + LL+   +    ++++S N  G TA D+     Q        SILE   +A 
Sbjct: 186 LRKQHETIRLLIGREAIAYGVEVNSINASGFTAKDVLDFILQSGGEYNDISILEMFQQAG 245

Query: 196 ARK----QTAPVSELPIDTTS---------------GFWIPI---------ETKNVILMV 227
           A K     T P S   ++  +                 W  +         ET+N +++V
Sbjct: 246 AMKAMDITTNPASTFQVEVKNINKNVNHTSQNSCPWNLWKELKLEIEESSTETQNALMVV 305

Query: 228 LGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQK-FDAKDVISGKLPTVVYLMIFNS 286
             +IAT  + AT   P+ F      + +  N  Q +     + V++G         +FN+
Sbjct: 306 ATLIATVTYQATLSPPSGFWSAESRRSQTINSVQKRDILPGEAVMTGDPEVFAVFTVFNA 365

Query: 287 AGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTPKFSVSVGKFSISSMALM 346
            GF  ++A I +L     LR  L   ++ +   YV+ V  ++P    ++        A++
Sbjct: 366 VGFFASIAMISLLTSGFPLRAGLRLAILSMTATYVIAVIYMSPTERKTID-------AVV 418

Query: 347 WSLVAALSLSGISVLSMWGKYTSSLWRFIVWLSMK 381
           WS+       G+ VL+ +        RF++W+  K
Sbjct: 419 WSV-------GLLVLAEFA-------RFMIWILKK 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490025|ref|XP_003634016.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 162/359 (45%), Gaps = 39/359 (10%)

Query: 4   ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTP 63
           ELI L K D ++E     NQ+G + +H A   G  E++  L K D +   + E     TP
Sbjct: 54  ELIRL-KPDFIKE----LNQDGFSPIHMAAANGHQEVVMELLKFDWKXCHL-EGRDEKTP 107

Query: 64  LHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNRE 121
           LH AA+ G   ++R I  AC E +  +T   E AL LAVK+SQ +A ++LVE+ +   RE
Sbjct: 108 LHCAAMKGKVNVVRVILSACKECIEDVTVQKEIALHLAVKNSQYEAVRVLVEKVREMRRE 167

Query: 122 HLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS--SSDIIQIDSKNNQGQTALDICKANS 179
            + N  D+ GN++LHLA   K      LL + +   S + +++  NN G TALD+     
Sbjct: 168 DVLNMKDEHGNTILHLATWRKQRQAKFLLGDATIPGSGVTEVNLMNNSGLTALDVLLIFP 227

Query: 180 QDSVSNEIGSILERAAARK------------------QTAPVSELPIDTTS--------- 212
            ++   EI  IL  A A++                   T  V   P+   +         
Sbjct: 228 SEAGDREIKEILHSAGAKRAQDIAFPPFGTQNHARLNSTTTVETCPMQPNNLVNYFRFHR 287

Query: 213 GFWIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVIS 272
           G   P E ++ +L++  ++ATA +      P    + N    + N+    +   A   I 
Sbjct: 288 GRDSPGEARSALLVIAVLVATATYQVGLSPPGGVWQDNSGTNQSNSTATNKAHFAGQSIF 347

Query: 273 GKLPTVVY--LMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVYVMLVDEVTP 329
             L  + +   ++FNS GF  ++  I IL  +  +R  L   ++ +   Y   +  ++P
Sbjct: 348 SSLGIISFGIFVLFNSIGFSVSLYMISILTSKFPMRFELQICLLAMFFTYNTAIITISP 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447366|ref|XP_002274771.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 161/353 (45%), Gaps = 60/353 (16%)

Query: 16  EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGM 75
           E  S+ N++G  ++H A   G  +++  L  +  + G +   +   TPLH AA+ G T +
Sbjct: 62  EISSSLNKDGFAAIHLASANGFVDIVRELLMVKHELGHLRCSDS-RTPLHLAAITGRTEV 120

Query: 76  IREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS 133
           IRE+   C  S+  +T   ETA+ LAVK++Q+ A K LVE  K  N + L NA D++GN+
Sbjct: 121 IRELLRICPASIEDVTVGGETAVHLAVKNNQLKALKALVESFKHSNIQDLLNAKDEDGNT 180

Query: 134 LLHLAALNKLIVIVNLLL-EGS-SSDIIQIDSKNNQGQTALDICKANSQDSVSNEIG--- 188
           +LHLA   K  + + LLL +G  ++  + ++  N  G T LD+     Q  + NE G   
Sbjct: 181 VLHLATARKQGLTMKLLLGDGDMAAAAVDVNLTNKSGFTVLDLLDVVQQ--IVNEPGDYI 238

Query: 189 --SILERAAARK----------------QTAPVSELP--------IDTTSGFWIPIE--- 219
              +L R+ A +                Q + ++E P            + F  P +   
Sbjct: 239 LRDLLLRSGALRASELIKSSSAATPQVHQNSSITEPPQIQNQQNVFVMETSFLNPSQLWK 298

Query: 220 ------------TKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDA 267
                       TKN +++V+ +IAT  + A    P  F      QG  N  P    F  
Sbjct: 299 MSVKELEQSSEGTKNALMVVVVLIATVTYQAILQPPGGF----DAQG-WNITP----FQG 349

Query: 268 KDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFVICICVVY 320
             ++   L   +   I NS GF T++A II+L+ R  L+ +L   V  +   Y
Sbjct: 350 PALMIKSLALFIPFTILNSVGFFTSVAVIILLINRFPLKKLLRLAVCSMAATY 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739323|emb|CBI28974.3| unnamed protein product [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 140/307 (45%), Gaps = 59/307 (19%)

Query: 62  TPLHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN 119
           TPLH AA+ G T +IRE+   C  S+  +T   ETA+ LAVK++Q+ A K LVE  K  N
Sbjct: 16  TPLHLAAITGRTEVIRELLRICPASIEDVTVGGETAVHLAVKNNQLKALKALVESFKHSN 75

Query: 120 REHLFNATDKEGNSLLHLAALNKLIVIVNLLL-EGS-SSDIIQIDSKNNQGQTALDICKA 177
            + L NA D++GN++LHLA   K  + + LLL +G  ++  + ++  N  G T LD+   
Sbjct: 76  IQDLLNAKDEDGNTVLHLATARKQGLTMKLLLGDGDMAAAAVDVNLTNKSGFTVLDLLDV 135

Query: 178 NSQDSVSNEIG-----SILERAAARK----------------QTAPVSELP--------I 208
             Q  + NE G      +L R+ A +                Q + ++E P         
Sbjct: 136 VQQ--IVNEPGDYILRDLLLRSGALRASELIKSSSAATPQVHQNSSITEPPQIQNQQNVF 193

Query: 209 DTTSGFWIPIE---------------TKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQ 253
              + F  P +               TKN +++V+ +IAT  + A    P  F      Q
Sbjct: 194 VMETSFLNPSQLWKMSVKELEQSSEGTKNALMVVVVLIATVTYQAILQPPGGF----DAQ 249

Query: 254 GELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLKLRTILLFFV 313
           G  N  P    F    ++   L   +   I NS GF T++A II+L+ R  L+ +L   V
Sbjct: 250 G-WNITP----FQGPALMIKSLALFIPFTILNSVGFFTSVAVIILLINRFPLKKLLRLAV 304

Query: 314 ICICVVY 320
             +   Y
Sbjct: 305 CSMAATY 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081857|emb|CBI20862.3| unnamed protein product [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 137/302 (45%), Gaps = 47/302 (15%)

Query: 23  QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--A 80
             GCT +H A  +G  E+   L +LDP   S+ +DN   TPLH AA+ G   +I EI   
Sbjct: 150 HTGCTPLHLACSKGHLEITRELLRLDPDLTSL-QDNDGRTPLHWAAMKGRVNIIDEILSV 208

Query: 81  CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAL 140
             +S    T   ET L LAVK++Q +A K L E     N   L N  D +GN++LHLA  
Sbjct: 209 SLQSAEMRTEHGETVLHLAVKNNQYEAVKYLTETL---NISQLLNTPDSDGNTILHLATA 265

Query: 141 NKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK-- 198
            KL   V  LL+      + +++ N +G T LD+ + ++ +S S  +   L  A A++  
Sbjct: 266 GKLTTTVLYLLKLG----VNVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKRCD 321

Query: 199 QTAPVSELPIDT--------------TSGFWIPIETKNVILMVLGMIATAFFAATCDLPN 244
           Q  PVS+  I T              T G       +N I +V  +IAT  F+A  + P 
Sbjct: 322 QLPPVSQ-EIQTITEPSRREKQLEQQTEGLR---NARNTITVVAVLIATVTFSAGVNPPG 377

Query: 245 SFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRLK 304
            F   N   G             K ++  K P  V+ M+ N      ++  +I+LV  + 
Sbjct: 378 GF---NQSSG-------------KAIMGKKTPFKVF-MVCNILALFLSLGIVIVLVSIIP 420

Query: 305 LR 306
            R
Sbjct: 421 FR 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453053|ref|XP_004144273.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Cucumis sativus]

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 151/329 (45%), Gaps = 48/329 (14%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIAC 81
           +  GC+++H A  EG  +++  L ++DP   S+   +G+  P+H AA+ G   ++ E+  
Sbjct: 73  DSRGCSALHFAAAEGFLDIVKILVRVDPDMCSICNQDGM-NPIHLAAMRGRIDVLAELVR 131

Query: 82  SESLAKLTS--DAETALILAVKSSQIDAFKILVEETKRHNREHLF-NATDKEGNSLLHLA 138
               A  T+     T L L VK +Q++A K+L+E     +R++ F N+ D  G ++LHLA
Sbjct: 132 VRPTAARTAVDGGGTVLHLCVKYNQLEALKMLIETIGVKDRDNGFINSQDNYGFTILHLA 191

Query: 139 ALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK 198
             NK +  V  L+  ++   IQ+++K + G TALDI   + +D    +I   L  A A +
Sbjct: 192 VSNKQLQTVKYLINNNTK--IQVNAKTSNGFTALDILSQSHRDLKDMDIAETLTAAKAVR 249

Query: 199 QT---------APVSELPIDTTSG-------------FWIPIET------KNVILMVLGM 230
            T         +  + +  +  +G             +W P ET      +  +++V  +
Sbjct: 250 TTNKKPPPPPPSSSNCVEKNKRTGLRWAFSALFHGGDWWFPNETSEWLMKQESLMVVASL 309

Query: 231 IATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKL-PTVVYLMIFNSAGF 289
           IAT  F A    P      + P                 V++ K   T    ++ NS GF
Sbjct: 310 IATMAFQAGLSPPGGVWGDDSPGA------------GTSVMAAKAEETYQKYLVANSIGF 357

Query: 290 MTAMAAII-ILVWRLKLRTILLFFVICIC 317
           MT+  AI+ ILV   K R  + F ++ +C
Sbjct: 358 MTSFIAIVMILVGLPKKRIFMRFLIMTMC 386

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476356|ref|XP_003631824.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 12/189 (6%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI- 79
           ++  GCT +H A  +G  E+   L +LDP   S+ +DN   TPLH AA+ G   +I EI 
Sbjct: 168 KDSQGCTPLHLACSKGHLEITRELLRLDPDLTSL-QDNDGRTPLHWAAMKGRVNIIDEIL 226

Query: 80  -ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLA 138
               +S    T   ET L LAVK++Q +A K L E     N   L N  D +GN++LHLA
Sbjct: 227 SVSLQSAEMRTEHGETVLHLAVKNNQYEAVKYLTETL---NISQLLNTPDSDGNTILHLA 283

Query: 139 ALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK 198
              KL   V  LL+      + +++ N +G T LD+ + ++ +S S  +   L  A A++
Sbjct: 284 TAGKLTTTVLYLLKLG----VNVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKR 339

Query: 199 --QTAPVSE 205
             Q  PVS+
Sbjct: 340 CDQLPPVSQ 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765315|emb|CAN66947.1| hypothetical protein VITISV_020094 [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 12/189 (6%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI- 79
           ++  GCT +H A  +G  E+   L +LDP   S+ +DN   TPLH AA+ G   +I EI 
Sbjct: 168 KDSQGCTPLHLACSKGHLEITRELLRLDPDLTSL-QDNDGRTPLHWAAMKGRVNIIDEIL 226

Query: 80  -ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLA 138
               +S    T   ET L L VK++Q +A K L E     N   L N  D +GN++LHLA
Sbjct: 227 SVSLQSAEMRTEHGETVLHLXVKNNQYEAVKYLTETL---NISQLLNTPDSDGNTILHLA 283

Query: 139 ALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK 198
              KL   V  LL+      + +++ N +G T LD+ + ++ +S S  +   L  A A++
Sbjct: 284 TAGKLTTTVLYLLKLG----VNVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKR 339

Query: 199 --QTAPVSE 205
             Q  PVS+
Sbjct: 340 CDQLPPVSQ 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.403	0.373	0.297	6.7e-10
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.418	0.288	0.293	8.7e-10
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.441	0.398	0.276	1.5e-09
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.426	0.399	0.282	5.2e-09
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.401	0.294	0.276	8.1e-09
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.776	0.678	0.235	1e-08
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.596	0.351	0.256	1.2e-08
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.388	0.259	0.289	1.2e-07
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.561	0.503	0.246	2.1e-07
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.887	0.589	0.233	7.3e-07

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 52/175 (29%), Positives = 82/175 (46%)

Query:    22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE--I 79
             N +G + +H A      ++   L K++P    V    G+T PLH     GD  ++ E  +
Sbjct:    68 NSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMT-PLHLVVKKGDANLLTEFLL 126

Query:    80 ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKR-HNRE------HLFNATDKEGN 132
             AC ES+     + ETAL +AV + + +  K+L     R H  +      H+ N  D++GN
Sbjct:   127 ACPESIKDTNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTEIHVLNKRDRDGN 186

Query:   133 SLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKAN-SQDSVSNE 186
             ++LHLAA            +  S   +  D +N  G TALDI + N S  ++  E
Sbjct:   187 TILHLAAYKNNHKAFKELLKCIS---LNRDIQNKGGMTALDILRTNGSHMNIKTE 238

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
 Identities = 52/177 (29%), Positives = 84/177 (47%)

Query:     7 ELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHR 66
             +LA+++    +D +Q+    T +H A  +GD E+   L  LD      +  NGL+ PLH 
Sbjct:   157 DLAREEAWVVEDGSQS----TLLHHACDKGDFELTTILLGLDQGLEEALNPNGLS-PLHL 211

Query:    67 AAVNGDTGMIREIACSE--SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLF 124
             A + G   ++ E       S + +T   ET   LA ++  +DAF + + E+   N + L 
Sbjct:   212 AVLRGSVVILEEFLDKVPLSFSSITPSKETVFHLAARNKNMDAF-VFMAESLGINSQILL 270

Query:   125 NATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANSQD 181
               TD+ GN++LH+AA             G +  I+ I SKN  G  A  +    +QD
Sbjct:   271 QQTDESGNTVLHIAASVSFDAPLIRYIVGKN--IVDITSKNKMGFEAFQLLPREAQD 325

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 50/181 (27%), Positives = 85/181 (46%)

Query:    22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-- 79
             ++NG + +H A   G  E +     ++ +   + + +G  TPLH A + G   +IREI  
Sbjct:    44 DKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDG-KTPLHVATMRGKIDVIREIVA 102

Query:    80 ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
             +C + L   T   +TAL LAV   +I+A   +VE     NR  + N  D++GN+ LHLA 
Sbjct:   103 SCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKKDEQGNTALHLAT 162

Query:   140 XXXXXXXXXXXXEG--SSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR 197
                         +     S   ++++ N  G +A+D+      ++   EI   L  A A+
Sbjct:   163 WRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIYEKLIEAGAQ 222

Query:   198 K 198
             +
Sbjct:   223 R 223

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 52/184 (28%), Positives = 89/184 (48%)

Query:    22 NQNGCTSMHRAPVEGDG-EMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE-- 78
             N+ G + +H A VE D  E+   L K+DP    +    G+T PLH  A  GD  ++ +  
Sbjct:    68 NEYGLSPLHLA-VENDQVELALELVKVDPSLVRIRGRGGMT-PLHLVAKKGDVDLLTDFL 125

Query:    79 IACSESLAKLTSDAETALILAVKSSQIDAFKILVE-ETKRHNREHLF----NATDKEGNS 133
             +AC ES+  +  + ET L + + + + +  K+L     K  + + +F    N  D+ GN+
Sbjct:   126 LACPESIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRDRGGNT 185

Query:   134 LLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILER 193
             +LHLAA            +  S D    + +N  G TALD+ +A     ++ EI  I++ 
Sbjct:   186 VLHLAAYENNDKVVKQLVKCLSLDR---NIQNKSGMTALDVLRARGSH-MNKEIEEIIQM 241

Query:   194 AAAR 197
             +  +
Sbjct:   242 SGGK 245

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 8.1e-09, P = 8.1e-09
 Identities = 49/177 (27%), Positives = 87/177 (49%)

Query:    20 TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI 79
             T + +  T++H A  +G  E+++ L +L      + + NG T  LH A+ NG   +I+ +
Sbjct:   130 TVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTA-LHSASRNGHVKVIKAL 188

Query:    80 ACSESLAKLTSD--AETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL 137
               SE    +  D   +TAL +AVK + ++    +VEE  + +R  + N  D +GN+ LH+
Sbjct:   189 LASEPAIAIRMDKKGQTALHMAVKGTNVE----VVEELIKADRSSI-NIADTKGNTALHI 243

Query:   138 AAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSN-EIGSILER 193
             AA              + +D   +   N  G+TALD     + + + N E+  IL++
Sbjct:   244 AARKGRSQIVKLLLANNMTDTKAV---NRSGETALD-----TAEKIGNPEVALILQK 292

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 86/365 (23%), Positives = 154/365 (42%)

Query:    22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE--I 79
             N +G T +H A   G   ++  + K+DP    +   +G+T PL  A       ++ E  +
Sbjct:    69 NADGLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMT-PLLVAVSRKKIDLMSEFFL 127

Query:    80 ACSESLAKLTSDAETALILAVKSSQ----IDAFKILV-------EETKRHNREHLFNATD 128
              C ES+     + E AL +AV +      +   K+L+       ++        + N  D
Sbjct:   128 GCPESIVDANVNGENALHIAVNNYDQREGLSVLKVLMGWILRLCQKDAEWIETRVINRRD 187

Query:   129 KEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIG 188
             K+GN+ LHLAA            E S  ++  I++KN  G T  DI   ++    + EI 
Sbjct:   188 KDGNTPLHLAAYEINRQAMKLLLESSKINV-NIENKN--GLTVFDIAVLHN----NREIE 240

Query:   189 SILERAAARKQTAPVSELPIDTTSGF--------------------WIPIETKNVILMVL 228
              +++R   ++    VS + I TTS                      WI  E +N +L+V 
Sbjct:   241 RMVKRHGGKRS---VSLVKIKTTSDILASQLSWRESRRTKKIRFYSWISEERRNALLVVA 297

Query:   229 GMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAG 288
              +I TA +      P     G    G   +   G K  A  V+  ++   ++L ++NSAG
Sbjct:   298 TLIVTATYQTVLQPPGGVSDG----GGQKSGTSGPK--AGSVVMDEV-YFIWLWLWNSAG 350

Query:   289 FMTAMAAIIILVWRLKLRTILLFFVICICVV--YVMLVDEVTPKF-SVSVGKFSISSMAL 345
             F  A+  +I L+  L   ++  ++ + + +V  Y +  D + P   + ++       + +
Sbjct:   351 FCFAIEMMIRLL-SLGQESMFWYYPLFVPMVLAYSVAGDVIKPNARAYTIAGVGAIVVLI 409

Query:   346 MWSLV 350
             +W LV
Sbjct:   410 IWGLV 414

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 67/261 (25%), Positives = 109/261 (41%)

Query:    47 LDPQTGSV-VEDNGLTTPLHRAAVNGDTGMIREIA--CSESLAKLTSDAETALILAVKSS 103
             LD    SV V D+  + P+H A   G   +++ I   C ++L  L  + +  L +A K+ 
Sbjct:   336 LDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNG 395

Query:   104 QIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDS 163
             +I+  K ++   K  N+E L N  D  GN+ LHLA               +  D+  +  
Sbjct:   396 KIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTL-- 453

Query:   164 KNNQGQTALDICKANSQDSVS---NEIGSILERAAARKQTAPVSELPIDTTSGFWIPIET 220
              N+ G TALDI + N   S +         L  A A +    +   P+   S      + 
Sbjct:   454 -NHDGVTALDIAEKNMDSSYTFFERLTWMALISAGAPRGPKLILSTPVTQNSDGGKYKDR 512

Query:   221 KNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVY 280
              N +L+V  ++AT  F A   LP  +       G + N   G    AK     K    V+
Sbjct:   513 VNTLLLVATLVATMTFTAGFTLPGGY------NGSVPNF--GMATLAK-----KTAFQVF 559

Query:   281 LMIFNSAGFMTAMAAIIILVW 301
             L +F++     ++  I+ L+W
Sbjct:   560 L-VFDTLAMYCSIITIVALIW 579

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 49/169 (28%), Positives = 77/169 (45%)

Query:    18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLD--PQTGSVVEDNGLTTPLHRAAVNGDTGM 75
             D+ + Q+  T +H+A   G+ EM   L  +D   +    V+ +GLT PLHRA +NG   +
Sbjct:   192 DADEEQS--TLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGLT-PLHRAVINGSVEI 248

Query:    76 IREIAC-SESLAKLTSDA--ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGN 132
             ++E  C + S   +T+    ET   LA K  +  AF  + +     N   L  + D E N
Sbjct:   249 LKEFLCKAPSSFNITTQGTIETVFHLAAKYQKTKAFIFMAQSA---NIRQLLYSLDAEDN 305

Query:   133 SLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANSQD 181
             ++LH+AA               S   I +  KN +G  A+D+      D
Sbjct:   306 TVLHVAASVDSTSLVRHIL---SETTIDVTLKNKKGFAAVDLIDKEGVD 351

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 63/256 (24%), Positives = 112/256 (43%)

Query:    22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE--I 79
             N  G + +H A  EG   ++  L K+D     +    G+T P H+    G+T ++ E  +
Sbjct:    68 NTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMT-PFHQVVRRGETDLMTEFLL 126

Query:    80 ACSESLAKLTSDAETALILAVKSSQIDAFKIL---VEETKRHNREHL----FNATDKEGN 132
             AC   +     + ETAL +AV + + +  ++L   V+  ++ + E L     N  D++GN
Sbjct:   127 ACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEMQFLNKRDQDGN 186

Query:   133 SLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNE-IGSIL 191
             + LH+AA            + S+   +  +  N  G TALDI   N +D  +N  I +I+
Sbjct:   187 TALHIAAYQNRFKAVKILVKCSA---VNRNIHNRTGLTALDILH-NQRDHHANSNIENII 242

Query:   192 ERAAARK-QTAP----VSEL---PIDTTSGFWIPIE---------TKNVILMVLGMIATA 234
              +   +   + P    VSE+   PI  T   +             T++ +L++  +I TA
Sbjct:   243 RKWGGKSGNSLPKSKKVSEILRSPISFTEHLFTQTARYRNQTSEGTRSALLVIAALIITA 302

Query:   235 FFAATCDLPNSFVKGN 250
              +      P    + N
Sbjct:   303 TYQTALQPPGGVYQEN 318

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 7.3e-07, P = 7.3e-07
 Identities = 91/390 (23%), Positives = 156/390 (40%)

Query:     7 ELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHR 66
             ELA+K+  + +D +++    T +H A  +GD E+   L  L+      +   GL+ PLH 
Sbjct:   157 ELARKNAWEVEDGSRS----TLLHYACDKGDLELTSILLGLNQGLEEALNSKGLS-PLHL 211

Query:    67 AAVNGDTGMIREIACSESLAKL--TSDAETALILAVKSSQIDAFKILVEETKRHNREHLF 124
             A   G   ++ E      L+    T   ET   LA ++   DAF + + E    +   L 
Sbjct:   212 AVQRGSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNKNTDAF-VFMAENLGTSSPILL 270

Query:   125 NATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANSQDSVS 184
                D++GN++LH+AA             G    II I  +NN G  A  +    +QD   
Sbjct:   271 KKKDQQGNTVLHIAASVSCGSPLIRYIVGKK--IIDIRDRNNMGYRAYHLLPRQAQDY-- 326

Query:   185 NEIGSILERAAARKQTAPVSELPIDTTSGFWIPIETKNVI-LMVLGMIATAFFAATCDLP 243
               I S L      K +  V     +        I    VI L+ L  I+T+  A      
Sbjct:   327 EFISSYLR--CDTKTSEEVDSKKAERNEPH---IGHSEVIRLLKLIEISTSEIAERKKSK 381

Query:   244 NSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVVYLMIFNSAGFMTAMAAIIILVWRL 303
                VK  H   E   H +  + +A++ I+  +  V+   +  + G            W+ 
Sbjct:   382 KHHVKRGHKSLEHEMHIEALQ-NARNTIA--IVAVLIASVSYAGGINPPGGVYQDGPWKG 438

Query:   304 K--LRTILLF--FVIC--------ICVVYVMLVDEVTPKFSVSVGKFSISSMALMWSLVA 351
             K  +     F  F IC        +C+V ++LV  + P     + K  +++  +MW  V 
Sbjct:   439 KSLVGNTAAFKVFAICNNIALFTSLCIV-ILLVS-IIPYQRKPLKKLLVATHRMMWVSVG 496

Query:   352 ALSLSGISV-LSMWGKYTSSLWRFIVWLSM 380
              ++ + ++  L     +  + W F V +S+
Sbjct:   497 FMATAYVAASLVTIPHFPGTRWLFPVIISV 526

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_40000092 hypothetical protein (459 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 57  DNGLTTPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEET 115
           D    TPLH AA NG   +++  +     +    +D  T L LA K+  ++  K+L+E  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-- 61

Query: 116 KRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC 175
               +    NA DK+GN+ LHLAA N  + +V LLL+  +     +++++  G+T L + 
Sbjct: 62  ----KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD----VNARDKDGRTPLHLA 113

Query: 176 KANSQDSV 183
             N    V
Sbjct: 114 AKNGHLEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE-I 79
           ++++G T +H A   G  E++  L +      +  +++G T PLH AA NG   +++  +
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRT-PLHLAAKNGHLEIVKLLL 60

Query: 80  ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
                +     D  T L LA ++  +D  K+L++           NA DK+G + LHLAA
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK------HGADVNARDKDGRTPLHLAA 114

Query: 140 LNKLIVIVNLLL 151
            N  + +V LLL
Sbjct: 115 KNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 64  LHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHL 123
           LH AA NG+  +++ +   +       D +TAL LA ++  ++  K+L+E          
Sbjct: 1   LHLAAKNGNLELVKLL-LEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD------ 53

Query: 124 FNATDKEGNSLLHLAALNKLIVIVNLLLE 152
            NA DK+GN+ LHLAA N  + IV LLLE
Sbjct: 54  VNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 57  DNGLTTPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAV-----KSSQIDAFKI 110
           D     PLH AA  GD  +++  +A    +    +D +T L LA          I+  K+
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 111 LVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQT 170
           L+E         + N  D++GN+ LH AALN    IV LLLE  +      +S+N+ G T
Sbjct: 130 LLE---AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD----PNSRNSYGVT 182

Query: 171 ALDICKANSQDSVSNEI 187
           ALD    N +  +   +
Sbjct: 183 ALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
           NA D++G + LHLAA N  + +V LLLE  +     +++K+N G+T L +  K    + V
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD----VNAKDNDGRTPLHLAAKNGHLEIV 56

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI 174
           NATD  GN+ LHLAA    + +V  LL+      + ++ +++ G TALD+
Sbjct: 10  NATDGNGNTPLHLAAKYGALELVQWLLK----PGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 219 ETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTV 278
           +T+N +L+V  +IAT  FAA    P  + + +        H  G       +++GK    
Sbjct: 6   KTRNSLLVVATLIATVTFAAGFTPPGGYWQDDG------GHHAG---TP--ILAGKPRRF 54

Query: 279 VYLMIFNSAGFMTAMAAIIILVWRL----KLRTILLFFVICICVVYVMLV 324
               + N+  F+ ++ A+I+L++ +    +    LL  +  + +  + L+
Sbjct: 55  KAFFVSNTIAFVASLVAVILLLYIVPSFSRRLPRLLALLTLLWLSLLSLM 104

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 61  TTPLHRAAVNGDTGMIREIACS-ESLAKLTSDAETALILAVKSSQIDAFKILV 112
            T LH+AA++G   +++ +      + +   D  TAL +A ++  ++  K+L+
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 62  TPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVE 113
           T LH AA NG+  +++  +     +     D  TAL LA ++  ++  K+L+E
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 94  TALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLL 151
           TAL  A  S +++  K L+E  K  +     N TD++GN+ LH+AA N  + ++ LLL
Sbjct: 3   TALHKAAISGRLELVKYLLE--KGVD----INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02874	434	ankyrin repeat protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02946	446	ankyin-like protein; Provisional	99.93
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.91
KOG0510	929	consensus Ankyrin repeat protein [General function	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02876	682	ankyrin repeat protein; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PF13962	113	PGG: Domain of unknown function	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.86
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02730	672	ankyrin-like protein; Provisional	99.85
PHA02795	437	ankyrin-like protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02730	672	ankyrin-like protein; Provisional	99.84
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.82
PHA02792	631	ankyrin-like protein; Provisional	99.81
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.81
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.8
PHA02792	631	ankyrin-like protein; Provisional	99.78
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.76
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG0514	452	consensus Ankyrin repeat protein [General function	99.63
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.54
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.36
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.32
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.29
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.2
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.15
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.14
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.76
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.76
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.76
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.74
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.74
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.66
PF13606	30	Ank_3: Ankyrin repeat	98.62
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.61
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.6
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.57
PF13606	30	Ank_3: Ankyrin repeat	98.55
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.52
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.51
KOG0522	560	consensus Ankyrin repeat protein [General function	98.44
KOG0522	560	consensus Ankyrin repeat protein [General function	98.42
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.27
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.18
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.07
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.06
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.95
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.82
KOG0511	516	consensus Ankyrin repeat protein [General function	97.81
KOG0511	516	consensus Ankyrin repeat protein [General function	97.68
KOG2384	223	consensus Major histocompatibility complex protein	97.65
KOG2384	223	consensus Major histocompatibility complex protein	97.58
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.72
KOG2505	591	consensus Ankyrin repeat protein [General function	96.65
KOG2505	591	consensus Ankyrin repeat protein [General function	96.41
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.37
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.07
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.19
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	84.81

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9e-35  Score=239.87  Aligned_cols=179  Identities=23%  Similarity=0.336  Sum_probs=159.3

Q ss_pred             HHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh--hccCC
Q 015882            7 ELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--ACSES   84 (399)
Q Consensus         7 ~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L--~~~~~   84 (399)
                      +.+......++....|.+|+||||+||..|+.+++++|++ .+++..+.+|+.|+||||+|+..|+.|+|+.|  +.+++
T Consensus        20 eel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad   98 (226)
T KOG4412|consen   20 EELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD   98 (226)
T ss_pred             HHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC
Confidence            3444444446666667799999999999999999999996 33333378899999999999999999999999  55999


Q ss_pred             ccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccccc
Q 015882           85 LAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSK  164 (399)
Q Consensus        85 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~  164 (399)
                      ++..++.|+|+||+|+..|+.++.++|++.|+.      ++.+|..|.||||-|+..|..+++++|+..|+    .+|..
T Consensus        99 vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~------i~~kD~~~qtplHRAAavGklkvie~Li~~~a----~~n~q  168 (226)
T KOG4412|consen   99 VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL------IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA----PLNTQ  168 (226)
T ss_pred             cceecCCCcceehhhhcCChhhHHHHHHhcCCC------CcccccccCchhHHHHhccchhhHHHHHhcCC----CCCcc
Confidence            999999999999999999999999999999877      89999999999999999999999999999999    89999


Q ss_pred             ccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          165 NNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       165 n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      |..|+||||.|..    .++.+...+|+++||+...
T Consensus       169 Dk~G~TpL~~al~----e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  169 DKYGFTPLHHALA----EGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             cccCccHHHHHHh----ccCchHHHHHHHhccceee
Confidence            9999999999955    4577899999999988774

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=9.1e-31  Score=216.21  Aligned_cols=161  Identities=22%  Similarity=0.274  Sum_probs=149.9

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhc-CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-h
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKL-DPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-A   80 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~   80 (399)
                      .+++++|.++. .-.++.+|..|+||||+||..|+.|+|+.|+.+ ++++  +..++.|.||||+||..|+.||+++| .
T Consensus        51 ~eiv~fLlsq~-nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv--na~tn~G~T~LHyAagK~r~eIaqlLle  127 (226)
T KOG4412|consen   51 VEIVYFLLSQP-NVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV--NATTNGGQTCLHYAAGKGRLEIAQLLLE  127 (226)
T ss_pred             hhHHHHHHhcC-CCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc--ceecCCCcceehhhhcCChhhHHHHHHh
Confidence            47888888743 334677899999999999999999999999998 9999  89999999999999999999999999 9


Q ss_pred             ccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccc
Q 015882           81 CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQ  160 (399)
Q Consensus        81 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~  160 (399)
                      .++.++.+|..|+||||-|+.-|..+++++|+..++.      +|.+|..|+||||.|.-.++.+...+|++.|+    +
T Consensus       128 ~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~------~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gA----d  197 (226)
T KOG4412|consen  128 KGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP------LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGA----D  197 (226)
T ss_pred             cCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC------CCcccccCccHHHHHHhccCchHHHHHHHhcc----c
Confidence            9999999999999999999999999999999999877      89999999999999988889999999999999    9


Q ss_pred             ccccccCCCCHHHHHHh
Q 015882          161 IDSKNNQGQTALDICKA  177 (399)
Q Consensus       161 ~~~~n~~g~Tpl~~a~~  177 (399)
                      .+..|++| ||+.+++.
T Consensus       198 ~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  198 TDREDKEG-TALRIACN  213 (226)
T ss_pred             eeeccccC-chHHHHHH
Confidence            99999988 99998874

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=8.4e-29  Score=230.07  Aligned_cols=175  Identities=17%  Similarity=0.182  Sum_probs=142.7

Q ss_pred             hhHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-h
Q 015882            2 SNELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-A   80 (399)
Q Consensus         2 ~~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~   80 (399)
                      +++++++|.+...    +..|.+|+||||+|+..|+.++++.|+++|++.  +.+  +|.||||+|+..|+.+++++| .
T Consensus        11 ~~~~~~~Lis~~a----~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~--n~~--d~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791         11 SKQLKSFLSSKDA----FKADVHGHSALYYAIADNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             HHHHHHHHHhCCC----CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC--cCC--CCCCHHHHHHHCCCHHHHHHHHH
Confidence            4678888877542    467889999999999999999999999999887  544  368999999999999999999 8


Q ss_pred             ccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCC-CcHHHHHHHcCcHHHHHHHHhCCCCCcc
Q 015882           81 CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG-NSLLHLAALNKLIVIVNLLLEGSSSDII  159 (399)
Q Consensus        81 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G-~T~LHlA~~~~~~~iv~~Ll~~g~~~~v  159 (399)
                      .+++++.+|.+|+||||+|+..|+.+++++|++.|++      ++.+|..| .||||+|+..|+.+++++|++.++    
T Consensus        83 ~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad------in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~----  152 (284)
T PHA02791         83 SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP----  152 (284)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC----
Confidence            8999999999999999999999999999999998876      66677776 478888888888888888887755    


Q ss_pred             cccccc-cCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          160 QIDSKN-NQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       160 ~~~~~n-~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +.  .| ..|.||||+|+.    .++.+++++|+++|++.+.
T Consensus       153 ~~--~d~~~g~TpLh~Aa~----~g~~eiv~lLL~~gAd~n~  188 (284)
T PHA02791        153 ST--FDLAILLSCIHITIK----NGHVDMMILLLDYMTSTNT  188 (284)
T ss_pred             cc--cccccCccHHHHHHH----cCCHHHHHHHHHCCCCCCc
Confidence            21  22 247788888887    7777888888888877553

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=228.82  Aligned_cols=177  Identities=14%  Similarity=0.072  Sum_probs=156.5

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      .++++.|.+....  .+..  +|.||||+|+..|+.++++.|+++|+++  +.+|..|.||||+|+..|+.+++++| ..
T Consensus        43 ~eiv~~Ll~~ga~--~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadv--n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~  116 (284)
T PHA02791         43 VRLVCTLLNAGAL--KNLL--ENEFPLHQAATLEDTKIVKILLFSGMDD--SQFDDKGNTALYYAVDSGNMQTVKLFVKK  116 (284)
T ss_pred             HHHHHHHHHCcCC--CcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3577777665432  2333  4799999999999999999999999999  88999999999999999999999999 99


Q ss_pred             cCCccccccCC-chHHHHHHHcCCHHHHHHHHHhhhcccccccccccC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcc
Q 015882           82 SESLAKLTSDA-ETALILAVKSSQIDAFKILVEETKRHNREHLFNATD-KEGNSLLHLAALNKLIVIVNLLLEGSSSDII  159 (399)
Q Consensus        82 ~~~~~~~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d-~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v  159 (399)
                      +++++.++..| .||||.|+..|+.+++++|++.+++        ..| ..|+||||+|++.|+.+++++|+++|+    
T Consensus       117 gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~--------~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA----  184 (284)
T PHA02791        117 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--------TFDLAILLSCIHITIKNGHVDMMILLLDYMT----  184 (284)
T ss_pred             CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc--------ccccccCccHHHHHHHcCCHHHHHHHHHCCC----
Confidence            99999988888 4999999999999999999997543        123 358999999999999999999999999    


Q ss_pred             cccccccCCCCH-HHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          160 QIDSKNNQGQTA-LDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       160 ~~~~~n~~g~Tp-l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      +++.+|..|.|| ||+|+.    .++.+++++|+++|++....
T Consensus       185 d~n~~d~~g~t~~L~~Aa~----~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        185 STNTNNSLLFIPDIKLAID----NKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             CCCcccCCCCChHHHHHHH----cCCHHHHHHHHHCCCCCccC
Confidence            999999999987 999999    88999999999999998753

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.9e-28  Score=237.91  Aligned_cols=179  Identities=18%  Similarity=0.188  Sum_probs=161.3

Q ss_pred             HHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHh-hccC
Q 015882            6 IELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVED-NGLTTPLHRAAVNGDTGMIREI-ACSE   83 (399)
Q Consensus         6 i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d-~~g~tpLh~Aa~~g~~~iv~~L-~~~~   83 (399)
                      ++.+.+.+ ...++..|.+|.|+||+||.+++++++++|+++|+++  +..+ .-+.||||+|+++|+..+|++| ++|+
T Consensus        60 v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv--n~~gG~l~stPLHWAar~G~~~vv~lLlqhGA  136 (600)
T KOG0509|consen   60 VKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV--NAIGGVLGSTPLHWAARNGHISVVDLLLQHGA  136 (600)
T ss_pred             HHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc--cccCCCCCCCcchHHHHcCcHHHHHHHHHcCC
Confidence            34444444 5667889999999999999999999999999999999  6666 7899999999999999999999 9999


Q ss_pred             CccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccc
Q 015882           84 SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDS  163 (399)
Q Consensus        84 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~  163 (399)
                      +++.+|.+|.||+|+|++.|+.-.+-+++.++++      +|.+|.+|+||||+|+.+|+...+..|++.++    .++.
T Consensus       137 dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d------~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a----~~~~  206 (600)
T KOG0509|consen  137 DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD------IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA----SLLL  206 (600)
T ss_pred             CCceecCCCCcHHHHHHHhCchHHHHHHHHhccc------CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc----cccc
Confidence            9999999999999999999999999999999876      89999999999999999999888999999999    8888


Q ss_pred             cc-cCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          164 KN-NQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       164 ~n-~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      .| ++|+||||+|+.    .++.+.+.+|++.|++....
T Consensus       207 ~d~~~g~TpLHwa~~----~gN~~~v~Ll~~g~~~~d~~  241 (600)
T KOG0509|consen  207 TDDNHGNTPLHWAVV----GGNLTAVKLLLEGGADLDKT  241 (600)
T ss_pred             cccccCCchHHHHHh----cCCcceEehhhhcCCccccc
Confidence            88 999999999998    77888888777777766543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.5e-27  Score=232.53  Aligned_cols=179  Identities=22%  Similarity=0.206  Sum_probs=145.3

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.|.+...  .++..+.+|.||||+|+..|+.++++.|+++|+++  +..+.++.||||.|+..|+.+++++| ..+
T Consensus        16 ~iv~~Ll~~g~--~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~   91 (413)
T PHA02875         16 DIARRLLDIGI--NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP--DVKYPDIESELHDAVEEGDVKAVEELLDLG   91 (413)
T ss_pred             HHHHHHHHCCC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--cccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence            56677765543  35667778999999999999999999999999887  67777888888888888888888888 665


Q ss_pred             CCc-cccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccc
Q 015882           83 ESL-AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQI  161 (399)
Q Consensus        83 ~~~-~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~  161 (399)
                      ... +..+.+|+||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|++.|+    ++
T Consensus        92 ~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad------~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~----~~  161 (413)
T PHA02875         92 KFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD------PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA----CL  161 (413)
T ss_pred             CcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC----CC
Confidence            544 34456788888888888888888888888777      67788888888888888888888888888888    78


Q ss_pred             cccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          162 DSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       162 ~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +.+|..|.||||+|+.    .++.+++++|+++|++.+.
T Consensus       162 ~~~d~~g~TpL~~A~~----~g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        162 DIEDCCGCTPLIIAMA----KGDIAICKMLLDSGANIDY  196 (413)
T ss_pred             CCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCCc
Confidence            8888888888888887    6778888888888887664

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.5e-27  Score=230.55  Aligned_cols=181  Identities=22%  Similarity=0.217  Sum_probs=164.8

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      .++++.|.+...  ..+..+.+|.||||+|+..|+.++++.|++.+++.. ...+.+|.||||+|+..|+.+++++| +.
T Consensus        48 ~~~v~~Ll~~ga--~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~  124 (413)
T PHA02875         48 SEAIKLLMKHGA--IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIAR  124 (413)
T ss_pred             HHHHHHHHhCCC--CccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            367888876653  245667889999999999999999999999998875 56788899999999999999999999 99


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccc
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQI  161 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~  161 (399)
                      |++++.++..|+||||+|+..|+.+++++|++.|++      ++.+|..|+||||+|+..|+.+++++|++.|+    ++
T Consensus       125 gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga----~~  194 (413)
T PHA02875        125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC------LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA----NI  194 (413)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CC
Confidence            999999999999999999999999999999999877      78899999999999999999999999999999    99


Q ss_pred             cccccCCC-CHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          162 DSKNNQGQ-TALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       162 ~~~n~~g~-Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +..+.+|. ||+|+|+.    .++.+++++|+++|++.+.
T Consensus       195 n~~~~~~~~t~l~~A~~----~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        195 DYFGKNGCVAALCYAIE----NNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             CcCCCCCCchHHHHHHH----cCCHHHHHHHHHCCcCcch
Confidence            99998875 88999998    7889999999999999874

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=229.45  Aligned_cols=180  Identities=21%  Similarity=0.234  Sum_probs=161.4

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+.. +...+..+.+|.||||.|+..|+.++|++|++.|+++  +..+..|.||||.|+..|+.+++++| +.+
T Consensus        15 ~~v~~ll~~~-~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~--n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g   91 (434)
T PHA02874         15 EAIEKIIKNK-GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI--NHINTKIPHPLLTAIKIGAHDIIKLLIDNG   91 (434)
T ss_pred             HHHHHHHHcC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            4555555544 3446777889999999999999999999999999999  88999999999999999999999998 554


Q ss_pred             -----------------------CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHH
Q 015882           83 -----------------------ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA  139 (399)
Q Consensus        83 -----------------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~  139 (399)
                                             .+++.+|..|+||||.|+..|+.+++++|++.|++      ++.+|.+|+||||+|+
T Consensus        92 ~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad------~n~~d~~g~tpLh~A~  165 (434)
T PHA02874         92 VDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD------VNIEDDNGCYPIHIAI  165 (434)
T ss_pred             CCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC------CCCcCCCCCCHHHHHH
Confidence                                   34567788999999999999999999999999887      7889999999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          140 LNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       140 ~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      ..++.+++++|++.|+    +++..|..|.||||+|+.    .++.+++++|++.|++...
T Consensus       166 ~~~~~~iv~~Ll~~g~----~~n~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        166 KHNFFDIIKLLLEKGA----YANVKDNNGESPLHNAAE----YGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             HCCcHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCcC
Confidence            9999999999999999    899999999999999998    7889999999999987653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2e-26  Score=231.92  Aligned_cols=167  Identities=20%  Similarity=0.217  Sum_probs=118.1

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCH-------------------------
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDT-------------------------   73 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~-------------------------   73 (399)
                      +..+..|.||||+|+..|+.++|+.|+++|+++  +.+|.+|.||||+|+..|+.                         
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv--n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a  108 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV--NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDA  108 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHH
Confidence            334556777777777777777777777777777  67777777777777765432                         


Q ss_pred             ---------------------------------------HHHHHh-hccCCccccccC-CchHHHHHHHcCCHHHHHHHH
Q 015882           74 ---------------------------------------GMIREI-ACSESLAKLTSD-AETALILAVKSSQIDAFKILV  112 (399)
Q Consensus        74 ---------------------------------------~iv~~L-~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll  112 (399)
                                                             +++++| +.|++++..|.+ |+||||.|+.+|+.+++++|+
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence                                                   255566 777777777777 777777777777777777777


Q ss_pred             HhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHH
Q 015882          113 EETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILE  192 (399)
Q Consensus       113 ~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~  192 (399)
                      +.|++      ++.+|..|+||||+|++.++.+++++|++.|+    +++.+|..|+||||+|+..   .++.+++++|+
T Consensus       189 ~~gad------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga----~in~~d~~g~TpLh~A~~~---~~~~~iv~~Ll  255 (477)
T PHA02878        189 SYGAN------VNIPDKTNNSPLHHAVKHYNKPIVHILLENGA----STDARDKCGNTPLHISVGY---CKDYDILKLLL  255 (477)
T ss_pred             HCCCC------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHh---cCCHHHHHHHH
Confidence            77665      66677777777777777777777777777777    7777777777777777741   23567777777


Q ss_pred             HccCccCC
Q 015882          193 RAAARKQT  200 (399)
Q Consensus       193 ~~ga~~~~  200 (399)
                      ++|++.+.
T Consensus       256 ~~gadvn~  263 (477)
T PHA02878        256 EHGVDVNA  263 (477)
T ss_pred             HcCCCCCc
Confidence            77776554

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=2.9e-26  Score=227.52  Aligned_cols=180  Identities=14%  Similarity=0.170  Sum_probs=153.3

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCC--HHHHHHh-
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGD--TGMIREI-   79 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~--~~iv~~L-   79 (399)
                      .++++.|.+....  ++.+|.+|.||||+|+..|+.++++.|+++|+++  +.+|.+|.||||+|+..++  .+++++| 
T Consensus        52 ~~iv~~Ll~~Gad--vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi--n~~d~~g~TpLh~A~~~~~~~~e~v~lLl  127 (446)
T PHA02946         52 ERFVEELLHRGYS--PNETDDDGNYPLHIASKINNNRIVAMLLTHGADP--NACDKQHKTPLYYLSGTDDEVIERINLLV  127 (446)
T ss_pred             HHHHHHHHHCcCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC--CCCCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence            4678888776543  7889999999999999999999999999999999  8999999999999998764  8899999 


Q ss_pred             hccCCccc-cccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcC--cHHHHHHHHhCCCC
Q 015882           80 ACSESLAK-LTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK--LIVIVNLLLEGSSS  156 (399)
Q Consensus        80 ~~~~~~~~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~--~~~iv~~Ll~~g~~  156 (399)
                      ..+++++. .|.+|.|||| |+..++.+++++|++.|++      ++.+|..|+||||+|+..+  +.+++++|++.|+ 
T Consensus       128 ~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad------~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Ga-  199 (446)
T PHA02946        128 QYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE------ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGI-  199 (446)
T ss_pred             HcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc------ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCC-
Confidence            99999985 6889999998 6667899999999998877      7889999999999988754  4688999999998 


Q ss_pred             CcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          157 DIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       157 ~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                         +++.+|.+|+||||+|+..+  .++.+++++|++ |++.+.
T Consensus       200 ---din~~d~~G~TpLH~Aa~~~--~~~~~iv~lLl~-gadin~  237 (446)
T PHA02946        200 ---SPSKPDHDGNTPLHIVCSKT--VKNVDIINLLLP-STDVNK  237 (446)
T ss_pred             ---CCcccCCCCCCHHHHHHHcC--CCcHHHHHHHHc-CCCCCC
Confidence               89999999999999998722  136778888874 666553

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.1e-26  Score=232.08  Aligned_cols=185  Identities=20%  Similarity=0.202  Sum_probs=130.0

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHH--hcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHH
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAP--VEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG--DTGMIRE   78 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa--~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~   78 (399)
                      .++++.+.+....  ++..|..|.||||+|+  ..|+.++++.|+++|+++  +..|..|.||||+|+..|  +.+++++
T Consensus        86 ~~iv~~Ll~~ga~--i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~iv~~  161 (480)
T PHA03100         86 KEIVKLLLEYGAN--VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV--NIKNSDGENLLHLYLESNKIDLKILKL  161 (480)
T ss_pred             HHHHHHHHHCCCC--CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCChHHHHHH
Confidence            3566666655432  3677777888888888  788888888888888777  677778888888888888  7888888


Q ss_pred             h-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccc-----------------------------------cc
Q 015882           79 I-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNR-----------------------------------EH  122 (399)
Q Consensus        79 L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----------------------------------~~  122 (399)
                      | +.+++++.+|..|.||||.|+..|+.+++++|++.|++++.                                   +.
T Consensus       162 Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~  241 (480)
T PHA03100        162 LIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV  241 (480)
T ss_pred             HHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC
Confidence            8 77777777777788888888888888888888877765320                                   12


Q ss_pred             cccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          123 LFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       123 lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      .+|.+|..|+||||+|+..++.+++++|++.|+    +++.+|..|+||+|+|+.    .++.+++++|+++|++.+
T Consensus       242 din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga----d~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        242 PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA----NPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCCHH
Confidence            245566666666666666666666666666666    666666666666666665    555666666666665443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.9e-26  Score=226.48  Aligned_cols=178  Identities=20%  Similarity=0.200  Sum_probs=156.0

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+..  ..++.+|..|.||||+|+..|+.++++.|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus       105 ~~i~~ll~~g--~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~--n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  180 (434)
T PHA02874        105 DMIKTILDCG--IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV--NIEDDNGCYPIHIAIKHNFFDIIKLLLEKG  180 (434)
T ss_pred             HHHHHHHHCc--CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC--CCcCCCCCCHHHHHHHCCcHHHHHHHHHCC
Confidence            3444444433  235678899999999999999999999999999999  88999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      ++++..|..|+||||.|++.|+.+++++|++.|++      ++.++..|.||||+|+..+. +.+++|+ .++    +++
T Consensus       181 ~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~------i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~----~in  248 (434)
T PHA02874        181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH------IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNA----SIN  248 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCC----CCC
Confidence            99999999999999999999999999999999877      77889999999999999865 5666666 466    789


Q ss_pred             ccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          163 SKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       163 ~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      .+|.+|+||||+|+..   ..+.+++++|+++|++.+.
T Consensus       249 ~~d~~G~TpLh~A~~~---~~~~~iv~~Ll~~gad~n~  283 (434)
T PHA02874        249 DQDIDGSTPLHHAINP---PCDIDIIDILLYHKADISI  283 (434)
T ss_pred             CcCCCCCCHHHHHHhc---CCcHHHHHHHHHCcCCCCC
Confidence            9999999999999972   2367999999999998775

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.9e-26  Score=230.73  Aligned_cols=178  Identities=22%  Similarity=0.198  Sum_probs=157.6

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHH-------------------------------------------
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGE-------------------------------------------   39 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~-------------------------------------------   39 (399)
                      .++++.|.+...  .++.+|.+|.||||+||..|+.+                                           
T Consensus        50 ~e~vk~Ll~~ga--dvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~  127 (477)
T PHA02878         50 LDVVKSLLTRGH--NVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKN  127 (477)
T ss_pred             HHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccC
Confidence            367888876653  46888999999999999987654                                           


Q ss_pred             ---------------------HHHHHhhcCCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHH
Q 015882           40 ---------------------MIHCLGKLDPQTGSVVEDNG-LTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETAL   96 (399)
Q Consensus        40 ---------------------~v~~Ll~~~~~~~~~~~d~~-g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~L   96 (399)
                                           +++.|+++|+++  +.+|.. |.||||+|+..|+.+++++| +.+++++.+|..|+|||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi--n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpL  205 (477)
T PHA02878        128 IQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI--NMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL  205 (477)
T ss_pred             cccCcHHHHhhccchhhHHHHHHHHHHHcCCCC--CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence                                 556666677777  677877 99999999999999999999 99999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHc-CcHHHHHHHHhCCCCCccccccccc-CCCCHHHH
Q 015882           97 ILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALN-KLIVIVNLLLEGSSSDIIQIDSKNN-QGQTALDI  174 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~-~~~~iv~~Ll~~g~~~~v~~~~~n~-~g~Tpl~~  174 (399)
                      |.|++.|+.+++++|++.|++      ++.+|..|+||||+|+.. ++.+++++|+++|+    +++.++. .|.||||+
T Consensus       206 h~A~~~~~~~iv~~Ll~~ga~------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga----dvn~~~~~~g~TpLh~  275 (477)
T PHA02878        206 HHAVKHYNKPIVHILLENGAS------TDARDKCGNTPLHISVGYCKDYDILKLLLEHGV----DVNAKSYILGLTALHS  275 (477)
T ss_pred             HHHHHhCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC----CCCccCCCCCCCHHHH
Confidence            999999999999999999887      889999999999999976 78999999999999    9999886 89999999


Q ss_pred             HHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          175 CKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       175 a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      |..      +.+++++|+++|++.+.
T Consensus       276 A~~------~~~~v~~Ll~~gadin~  295 (477)
T PHA02878        276 SIK------SERKLKLLLEYGADINS  295 (477)
T ss_pred             Hcc------CHHHHHHHHHCCCCCCC
Confidence            953      46789999999998875

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=3e-26  Score=231.22  Aligned_cols=184  Identities=17%  Similarity=0.127  Sum_probs=116.4

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhc-----CCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC---CHHH
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVE-----GDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG---DTGM   75 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~-----G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g---~~~i   75 (399)
                      |++++|.+...  .++.+|..|.||||.|+..     ++.++++.|+++|+++  +.+|.+|.||||+|+..|   +.++
T Consensus        52 ~iv~~Ll~~Ga--dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi--N~~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         52 DIVKLFINLGA--NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI--NKKNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             HHHHHHHHCCC--CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC--CCCCCCcCcHHHHHHHcCCcChHHH
Confidence            44455544332  2444555555555555432     3455555555555555  455555555555555543   3455


Q ss_pred             HHHh-hccCCccccccCCchHHHHHHHcCC---HHHHHHHHHhhhcc---------------------------------
Q 015882           76 IREI-ACSESLAKLTSDAETALILAVKSSQ---IDAFKILVEETKRH---------------------------------  118 (399)
Q Consensus        76 v~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~---------------------------------  118 (399)
                      +++| +.|++++.+|.+|.||||+|++.++   .+++++|++.|++.                                 
T Consensus       128 v~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        128 LLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             HHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence            5555 5555555555555555555555554   55555555544332                                 


Q ss_pred             -----cc---------------------------------cccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccc
Q 015882          119 -----NR---------------------------------EHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQ  160 (399)
Q Consensus       119 -----~~---------------------------------~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~  160 (399)
                           +.                                 ...+|.+|..|+||||+|+..++.+++++|++.|+    +
T Consensus       208 ~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GA----d  283 (489)
T PHA02798        208 NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG----D  283 (489)
T ss_pred             CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCC----c
Confidence                 10                                 01356778889999999999999999999999998    8


Q ss_pred             ccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          161 IDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       161 ~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      ++.+|..|+||||+|+.    .++.++++.|++.|++..
T Consensus       284 in~~d~~G~TpL~~A~~----~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        284 INIITELGNTCLFTAFE----NESKFIFNSILNKKPNKN  318 (489)
T ss_pred             ccccCCCCCcHHHHHHH----cCcHHHHHHHHccCCCHH
Confidence            99999999999999988    777888888888887665

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=6.5e-26  Score=228.56  Aligned_cols=184  Identities=20%  Similarity=0.254  Sum_probs=159.2

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhH-----HHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHH--HcCCHHH
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHR-----APVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAA--VNGDTGM   75 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~-----Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa--~~g~~~i   75 (399)
                      .++++.|.+....  ++..+..|.||||+     |+..|+.++++.|+++|+++  +..|..|.||||+|+  ..|+.++
T Consensus        48 ~~ivk~Ll~~g~~--~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i--~~~d~~g~tpL~~A~~~~~~~~~i  123 (480)
T PHA03100         48 IDVVKILLDNGAD--INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV--NAPDNNGITPLLYAISKKSNSYSI  123 (480)
T ss_pred             HHHHHHHHHcCCC--CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC--CCCCCCCCchhhHHHhcccChHHH
Confidence            4688888876643  67888899999999     99999999999999999999  899999999999999  9999999


Q ss_pred             HHHh-hccCCccccccCCchHHHHHHHcC--CHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 015882           76 IREI-ACSESLAKLTSDAETALILAVKSS--QIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE  152 (399)
Q Consensus        76 v~~L-~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~  152 (399)
                      +++| +.+++++..+..|+||||.|+..|  +.+++++|++.|++      ++.+|..|+||||+|+..|+.+++++|++
T Consensus       124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d------in~~d~~g~tpL~~A~~~~~~~iv~~Ll~  197 (480)
T PHA03100        124 VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD------INAKNRYGYTPLHIAVEKGNIDVIKFLLD  197 (480)
T ss_pred             HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC------cccccCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            9999 999999999999999999999999  99999999999887      66777778888888777777666666666


Q ss_pred             CCCCCc-------------------------------------ccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHcc
Q 015882          153 GSSSDI-------------------------------------IQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       153 ~g~~~~-------------------------------------v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~g  195 (399)
                      .|+...                                     .+++.+|..|.||||+|+.    .++.+++++|+++|
T Consensus       198 ~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~----~~~~~iv~~Ll~~g  273 (480)
T PHA03100        198 NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVY----NNNPEFVKYLLDLG  273 (480)
T ss_pred             cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcC
Confidence            654211                                     3678888999999999998    77789999999999


Q ss_pred             CccCC
Q 015882          196 ARKQT  200 (399)
Q Consensus       196 a~~~~  200 (399)
                      ++.+.
T Consensus       274 ad~n~  278 (480)
T PHA03100        274 ANPNL  278 (480)
T ss_pred             CCCCc
Confidence            87664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=8.6e-26  Score=202.14  Aligned_cols=157  Identities=16%  Similarity=0.164  Sum_probs=138.6

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcC--CHHHHHHHhhcCCCCCCccCC-CCCCcHHHHHHHc---CCHHHHH
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEG--DGEMIHCLGKLDPQTGSVVED-NGLTTPLHRAAVN---GDTGMIR   77 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~~d-~~g~tpLh~Aa~~---g~~~iv~   77 (399)
                      +.++.+.+.     .+..|..|.||||+|+..+  +.++++.|+++|+++  +.++ ..|.||||+|+..   ++.++++
T Consensus        35 ~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv--n~~~~~~g~TpLh~a~~~~~~~~~eiv~  107 (209)
T PHA02859         35 EGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV--NFKTRDNNLSALHHYLSFNKNVEPEILK  107 (209)
T ss_pred             HHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC--CccCCCCCCCHHHHHHHhCccccHHHHH
Confidence            455555432     4667899999999999854  899999999999999  7776 5899999998864   4799999


Q ss_pred             Hh-hccCCccccccCCchHHHHHHH--cCCHHHHHHHHHhhhcccccccccccCCCCCcHHHH-HHHcCcHHHHHHHHhC
Q 015882           78 EI-ACSESLAKLTSDAETALILAVK--SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL-AALNKLIVIVNLLLEG  153 (399)
Q Consensus        78 ~L-~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHl-A~~~~~~~iv~~Ll~~  153 (399)
                      +| +++++++.+|.+|+||||.|+.  .++.+++++|++.|++      ++.+|.+|+||||. |+..++.+++++|++.
T Consensus       108 ~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        108 ILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS------FLNKDFDNNNILYSYILFHSDKKIFDFLTSL  181 (209)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC------cccccCCCCcHHHHHHHhcCCHHHHHHHHHc
Confidence            99 9999999999999999999986  4689999999999887      88999999999996 5668899999999999


Q ss_pred             CCCCcccccccccCCCCHHHHHHh
Q 015882          154 SSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       154 g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      |+    +++.+|..|+||+|+|..
T Consensus       182 Ga----di~~~d~~g~tpl~la~~  201 (209)
T PHA02859        182 GI----DINETNKSGYNCYDLIKF  201 (209)
T ss_pred             CC----CCCCCCCCCCCHHHHHhh
Confidence            99    999999999999999985

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=8.9e-26  Score=231.74  Aligned_cols=180  Identities=20%  Similarity=0.194  Sum_probs=146.7

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCC--HHHHHHHhhcCCCCCCccCCCCCCcHHHHH--------------
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGD--GEMIHCLGKLDPQTGSVVEDNGLTTPLHRA--------------   67 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~--~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A--------------   67 (399)
                      +++++|.+...  .++.+|.+|.||||+|+..|+  .++|+.|+++|+++  +.+|..|.||||.|              
T Consensus       193 eIVklLLe~GA--DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV--N~kD~~G~TPLh~Ai~~a~n~~~EIvki  268 (764)
T PHA02716        193 DILEWLCNNGV--NVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM--DMKCVNGMSPIMTYIINIDNINPEITNI  268 (764)
T ss_pred             HHHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHhhhccCHHHHHH
Confidence            67888876653  477888899999999999885  48999999999998  88899999999864              


Q ss_pred             -----------------------HHcCCHHHHHHh-hccCCccccccCCchHHHHHHH--cCCHHHHHHHHHhhhccccc
Q 015882           68 -----------------------AVNGDTGMIREI-ACSESLAKLTSDAETALILAVK--SSQIDAFKILVEETKRHNRE  121 (399)
Q Consensus        68 -----------------------a~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~  121 (399)
                                             ++.|+.+++++| +.+++++.+|.+|+||||.|+.  +++.+++++|++.|++    
T Consensus       269 Lie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD----  344 (764)
T PHA02716        269 YIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND----  344 (764)
T ss_pred             HHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC----
Confidence                                   445778888888 8888899999999999998764  4678999999998877    


Q ss_pred             ccccccCCCCCcHHHHHHH--------------cCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHH
Q 015882          122 HLFNATDKEGNSLLHLAAL--------------NKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEI  187 (399)
Q Consensus       122 ~lin~~d~~G~T~LHlA~~--------------~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i  187 (399)
                        +|.+|..|+||||+|+.              .++.+++++|++.|+    +++.+|..|+||||.++......+..++
T Consensus       345 --IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA----DIn~kn~~G~TPLh~y~~~a~n~~~~dI  418 (764)
T PHA02716        345 --LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA----DITAVNCLGYTPLTSYICTAQNYMYYDI  418 (764)
T ss_pred             --CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC----CCCCcCCCCCChHHHHHHHHHhcChHHH
Confidence              78899999999998875              367899999999998    8999999999999953321122457889


Q ss_pred             HHHHHHccCc
Q 015882          188 GSILERAAAR  197 (399)
Q Consensus       188 ~~~L~~~ga~  197 (399)
                      +++|++.|+.
T Consensus       419 vklLis~~~~  428 (764)
T PHA02716        419 IDCLISDKVL  428 (764)
T ss_pred             HHHHHhCcch
Confidence            9999888764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=1.4e-25  Score=230.23  Aligned_cols=186  Identities=17%  Similarity=0.228  Sum_probs=158.3

Q ss_pred             hHHHHHHHhcCCccccccc-cCCCChHhhHHHh--cCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCC--HHHHH
Q 015882            3 NELIELAKKDKVQEKDSTQ-NQNGCTSMHRAPV--EGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGD--TGMIR   77 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~-d~~G~TpLh~Aa~--~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~--~~iv~   77 (399)
                      .+++++|.+... ..++.+ |..|.||||.|+.  .++.+++++|+++|+++  +.+|.+|.||||+|+..|+  .++++
T Consensus       155 leiVk~LLe~G~-ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV--N~kD~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        155 LDLIKYMVDVGI-VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV--NLQNNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             HHHHHHHHHCCC-CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCCCHHHHH
Confidence            478888887651 225666 8899999999865  46899999999999999  8999999999999999995  59999


Q ss_pred             Hh-hccCCccccccCCchHHHHH-------------------------------------HHcCCHHHHHHHHHhhhccc
Q 015882           78 EI-ACSESLAKLTSDAETALILA-------------------------------------VKSSQIDAFKILVEETKRHN  119 (399)
Q Consensus        78 ~L-~~~~~~~~~d~~g~t~Lh~A-------------------------------------~~~g~~~~v~~Ll~~~~~~~  119 (399)
                      +| +.|++++.+|.+|+||||.|                                     +++|+.+++++|++.|++  
T Consensus       232 lLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd--  309 (764)
T PHA02716        232 KIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK--  309 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc--
Confidence            99 99999999999999999975                                     345777888888888776  


Q ss_pred             ccccccccCCCCCcHHHHHHH--cCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhc----------CCCCcHHHH
Q 015882          120 REHLFNATDKEGNSLLHLAAL--NKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN----------SQDSVSNEI  187 (399)
Q Consensus       120 ~~~lin~~d~~G~T~LHlA~~--~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~----------~~~~~~~~i  187 (399)
                          +|.+|.+|+||||+|+.  .++.+++++|++.|+    +++.+|..|+||||+|+..          ....++.++
T Consensus       310 ----IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA----DIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eV  381 (764)
T PHA02716        310 ----LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN----DLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDV  381 (764)
T ss_pred             ----eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC----CCccCCCCCCCHHHHHHHhhhhhccccccccccChHHH
Confidence                88999999999999875  467899999999999    9999999999999998641          012357899


Q ss_pred             HHHHHHccCccCCC
Q 015882          188 GSILERAAARKQTA  201 (399)
Q Consensus       188 ~~~L~~~ga~~~~~  201 (399)
                      +++|+++|++.+..
T Consensus       382 VklLL~~GADIn~k  395 (764)
T PHA02716        382 IQCLISLGADITAV  395 (764)
T ss_pred             HHHHHHCCCCCCCc
Confidence            99999999987653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=225.64  Aligned_cols=183  Identities=15%  Similarity=0.128  Sum_probs=156.3

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhc---CCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHc--CCHHHHH
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVE---GDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVN--GDTGMIR   77 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~--g~~~iv~   77 (399)
                      .|++++|.+....  ++.+|.+|.||||.|+..   |+.+++++|+++|+++. +.+|..|.||||+|+..  ++.++++
T Consensus        88 ~~iv~~Ll~~Gad--in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin-~~~d~~g~tpLh~a~~~~~~~~~iv~  164 (494)
T PHA02989         88 KKIVKLLLKFGAD--INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN-DVKNSRGYNLLHMYLESFSVKKDVIK  164 (494)
T ss_pred             HHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc-cccCCCCCCHHHHHHHhccCCHHHHH
Confidence            4678888776544  778889999999988765   67899999999999984 47889999999998764  6889999


Q ss_pred             Hh-hccCCccc-cccCCchHHHHHHHcC----CHHHHHHHHHhhhccccc------------------------------
Q 015882           78 EI-ACSESLAK-LTSDAETALILAVKSS----QIDAFKILVEETKRHNRE------------------------------  121 (399)
Q Consensus        78 ~L-~~~~~~~~-~d~~g~t~Lh~A~~~g----~~~~v~~Ll~~~~~~~~~------------------------------  121 (399)
                      +| +.|++++. .+..|.||||+|++++    +.+++++|++.|++.+..                              
T Consensus       165 ~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~  244 (494)
T PHA02989        165 ILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL  244 (494)
T ss_pred             HHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHH
Confidence            99 99998887 5778999999988764    899999999998765321                              


Q ss_pred             --ccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccC
Q 015882          122 --HLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAA  196 (399)
Q Consensus       122 --~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga  196 (399)
                        ..+|.+|.+|+||||+|+..++.+++++|++.|+    +++.+|..|+||||+|+.    .++.++++.|++.+.
T Consensus       245 ~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Ga----din~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~p  313 (494)
T PHA02989        245 KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGD----DIYNVSKDGDTVLTYAIK----HGNIDMLNRILQLKP  313 (494)
T ss_pred             hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCC----CccccCCCCCCHHHHHHH----cCCHHHHHHHHhcCC
Confidence              1357889999999999999999999999999999    999999999999999998    778899999998764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.8e-25  Score=223.39  Aligned_cols=173  Identities=23%  Similarity=0.193  Sum_probs=94.0

Q ss_pred             cccccCCCChHhhHHHhcC-CHHHHHHHhhcCCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHh-hccCCccccccCCc
Q 015882           18 DSTQNQNGCTSMHRAPVEG-DGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAA--VNGDTGMIREI-ACSESLAKLTSDAE   93 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G-~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa--~~g~~~iv~~L-~~~~~~~~~d~~g~   93 (399)
                      ++.+|..|.||||+|+..| +.++++.|+++|+++  +.+|..|.||||+|+  ..++.+++++| +.+++++.+|..|.
T Consensus        76 in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i--n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~  153 (471)
T PHA03095         76 VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV--NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGM  153 (471)
T ss_pred             CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC--CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            3444444444444444444 244444444444444  444444444444444  22344444444 44444444444444


Q ss_pred             hHHHHHHHcC--CHHHHHHHHHhhhccc-----------------------------ccccccccCCCCCcHHHHHHHcC
Q 015882           94 TALILAVKSS--QIDAFKILVEETKRHN-----------------------------REHLFNATDKEGNSLLHLAALNK  142 (399)
Q Consensus        94 t~Lh~A~~~g--~~~~v~~Ll~~~~~~~-----------------------------~~~lin~~d~~G~T~LHlA~~~~  142 (399)
                      ||||+|+..+  +.+++++|++.|++..                             .+..++.+|..|+||||+|+..+
T Consensus       154 tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        154 TPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            4444444433  2444444444433311                             11224455566666666666655


Q ss_pred             cH--HHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          143 LI--VIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       143 ~~--~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +.  .+++.|++.|+    ++|.+|.+|+||||+|+.    .++.++++.|+++|++.+.
T Consensus       234 ~~~~~~v~~ll~~g~----din~~d~~g~TpLh~A~~----~~~~~~v~~LL~~gad~n~  285 (471)
T PHA03095        234 SCKRSLVLPLLIAGI----SINARNRYGQTPLHYAAV----FNNPRACRRLIALGADINA  285 (471)
T ss_pred             CchHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            43  45666666666    777788888888888877    6677888888888887764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=6.9e-26  Score=224.21  Aligned_cols=176  Identities=26%  Similarity=0.294  Sum_probs=156.3

Q ss_pred             CccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCC-------------CccCCCCCCcHHHHHHHcCCHHHHHHh-
Q 015882           14 VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTG-------------SVVEDNGLTTPLHRAAVNGDTGMIREI-   79 (399)
Q Consensus        14 ~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~-------------~~~~d~~g~tpLh~Aa~~g~~~iv~~L-   79 (399)
                      +...++..|.+|.||||.|+..|+.++++.+|+.+....             ++..|++|.||||+|++.|+.+.++.| 
T Consensus       214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll  293 (929)
T KOG0510|consen  214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLL  293 (929)
T ss_pred             hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHH
Confidence            334567778899999999999999999999998765443             245689999999999999999999999 


Q ss_pred             hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcc
Q 015882           80 ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDII  159 (399)
Q Consensus        80 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v  159 (399)
                      ..|++++.++.++.||||.|+.+|+.+.++.|++. .   ...++|..|..|+||||+|++.|+.+++++|++.|+   .
T Consensus       294 ~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~-~---~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA---~  366 (929)
T KOG0510|consen  294 GFGASINSKNKDEESPLHFAAIYGRINTVERLLQE-S---DTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGA---L  366 (929)
T ss_pred             HcCCcccccCCCCCCchHHHHHcccHHHHHHHHhC-c---CccccccccccCCCchhhhhhcCHHHHHHHHHhcCh---h
Confidence            99999999999999999999999999999999992 1   346799999999999999999999999999999999   2


Q ss_pred             ccc--ccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          160 QID--SKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       160 ~~~--~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      ..+  ..|.+|+||||.|+.    +++..+++.|+.+|++...
T Consensus       367 ~~~~~e~D~dg~TaLH~Aa~----~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  367 FLNMSEADSDGNTALHLAAK----YGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             hhcccccccCCchhhhHHHH----hccHHHHHHHHHcCCceee
Confidence            333  459999999999999    8899999999999999844

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3e-25  Score=198.61  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=148.2

Q ss_pred             CCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHh-hccCCccccc
Q 015882           13 KVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG--DTGMIREI-ACSESLAKLT   89 (399)
Q Consensus        13 ~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~L-~~~~~~~~~d   89 (399)
                      +...+.+...+.++||||.|+..|+.+.|+.|++.   .  +..|..|.||||+|+..+  +.+++++| +++++++.++
T Consensus         9 ~~~~~~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~---~--n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~   83 (209)
T PHA02859          9 DYNDFTDYLFYRYCNPLFYYVEKDDIEGVKKWIKF---V--NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT   83 (209)
T ss_pred             ccchhHHHHhhccCcHHHHHHHhCcHHHHHHHHHh---h--hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC
Confidence            34455566678899999999999999999999975   3  567899999999999865  89999999 9999999997


Q ss_pred             c-CCchHHHHHHHc---CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHH--cCcHHHHHHHHhCCCCCcccccc
Q 015882           90 S-DAETALILAVKS---SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAL--NKLIVIVNLLLEGSSSDIIQIDS  163 (399)
Q Consensus        90 ~-~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~--~~~~~iv~~Ll~~g~~~~v~~~~  163 (399)
                      . .|+||||+|+..   ++.+++++|++.|++      +|.+|.+|.||||+|+.  .++.+++++|++.|+    +++.
T Consensus        84 ~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga----din~  153 (209)
T PHA02859         84 RDNNLSALHHYLSFNKNVEPEILKILIDSGSS------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV----SFLN  153 (209)
T ss_pred             CCCCCCHHHHHHHhCccccHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC----Cccc
Confidence            4 799999998764   479999999999888      88999999999999986  468999999999999    9999


Q ss_pred             cccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          164 KNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       164 ~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +|.+|.||+|.++..   .++.+++++|+++|++...
T Consensus       154 ~d~~g~t~Lh~~a~~---~~~~~iv~~Ll~~Gadi~~  187 (209)
T PHA02859        154 KDFDNNNILYSYILF---HSDKKIFDFLTSLGIDINE  187 (209)
T ss_pred             ccCCCCcHHHHHHHh---cCCHHHHHHHHHcCCCCCC
Confidence            999999999975431   5678999999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.9e-25  Score=213.42  Aligned_cols=185  Identities=15%  Similarity=0.126  Sum_probs=159.0

Q ss_pred             hhHHHHHHHhcCCccc----cccccCCCChHhhHHHh--cCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q 015882            2 SNELIELAKKDKVQEK----DSTQNQNGCTSMHRAPV--EGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGM   75 (399)
Q Consensus         2 ~~e~i~~l~~~~~~~l----~~~~d~~G~TpLh~Aa~--~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i   75 (399)
                      ++|++|+|.+......    .-.++..++|+||+|+.  .|+.++|++|+++|+++  +.+  ++.||+|.|+..|+.++
T Consensus        89 ~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI--n~~--~~~t~lh~A~~~~~~eI  164 (437)
T PHA02795         89 YKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI--YKI--ECLNAYFRGICKKESSV  164 (437)
T ss_pred             hHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC--CCC--CCCCHHHHHHHcCcHHH
Confidence            4789999987775522    11577889999999999  89999999999999999  553  45899999999999999


Q ss_pred             HHHh-hccCCcccc------ccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHH
Q 015882           76 IREI-ACSESLAKL------TSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVN  148 (399)
Q Consensus        76 v~~L-~~~~~~~~~------d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~  148 (399)
                      +++| .+|+..+..      +..+.+++|.|.++++.+++++|+++|++      +|.+|..|+||||+|+..|+.++++
T Consensus       165 Vk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD------IN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        165 VEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED------INQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             HHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC------cCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999 877643222      23478999999999999999999999988      8999999999999999999999999


Q ss_pred             HHHhCCCCCcccccccccCCCCHHHHHHhcCC----CCcHHHHHHHHHHccCccCC
Q 015882          149 LLLEGSSSDIIQIDSKNNQGQTALDICKANSQ----DSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       149 ~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~----~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +|++.|+    +++.+|..|.||||+|+..+.    ...+.+++++|+++|++...
T Consensus       239 lLL~~GA----dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        239 WLLENGA----NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHHHCCC----CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            9999999    999999999999999997442    12467999999999987664

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=6.3e-25  Score=217.92  Aligned_cols=178  Identities=15%  Similarity=0.171  Sum_probs=155.3

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcC--CHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEG--DGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-   79 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-   79 (399)
                      .+++++|.+..  ..++.+|.+|.||||+|+..+  ..++++.|+++|+++. ...|.+|.|||| ||..|+.++++.| 
T Consensus        85 ~eiv~lLL~~G--Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin-~~~d~~g~tpL~-aa~~~~~~vv~~Ll  160 (446)
T PHA02946         85 NRIVAMLLTHG--ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN-NSVDEEGCGPLL-ACTDPSERVFKKIM  160 (446)
T ss_pred             HHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc-cccCCCCCcHHH-HHHCCChHHHHHHH
Confidence            47888888765  346789999999999999876  4899999999999993 357999999998 7778999999999 


Q ss_pred             hccCCccccccCCchHHHHHHHcC--CHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcC--cHHHHHHHHhCCC
Q 015882           80 ACSESLAKLTSDAETALILAVKSS--QIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK--LIVIVNLLLEGSS  155 (399)
Q Consensus        80 ~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~--~~~iv~~Ll~~g~  155 (399)
                      ..+++++..|..|+||||.|+..+  +.+++++|++.|++      +|.+|.+|+||||+|+..+  +.+++++|++ ++
T Consensus       161 ~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad------in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga  233 (446)
T PHA02946        161 SIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS------PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST  233 (446)
T ss_pred             hccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC
Confidence            999999999999999999998755  46899999999888      8899999999999999986  7899999985 77


Q ss_pred             CCcccccccccCCCCHHHHHHhcCCCCcH-HHHHHHHHHccCccC
Q 015882          156 SDIIQIDSKNNQGQTALDICKANSQDSVS-NEIGSILERAAARKQ  199 (399)
Q Consensus       156 ~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~-~~i~~~L~~~ga~~~  199 (399)
                          ++|.+|.+|+||||+|++    .++ .+++++|+++|+...
T Consensus       234 ----din~~d~~G~TpLh~A~~----~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        234 ----DVNKQNKFGDSPLTLLIK----TLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             ----CCCCCCCCCCCHHHHHHH----hCChHHHHHHHHhCCCCCC
Confidence                899999999999999997    433 588999999987543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.93  E-value=2.1e-25  Score=216.83  Aligned_cols=160  Identities=23%  Similarity=0.312  Sum_probs=144.6

Q ss_pred             HHHHHHHhcCCcccccccc-CCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            4 ELIELAKKDKVQEKDSTQN-QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d-~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      ++.+++.+...+  ++..+ .-|.||||+|+++|+..+|+.|+++|+++  ..+|.+|.+|||+|++.|+.-+|-+| ..
T Consensus        92 ~v~r~li~~gad--vn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp--t~~D~~G~~~lHla~~~~~~~~vayll~~  167 (600)
T KOG0509|consen   92 DVARYLISHGAD--VNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP--TLKDKQGLTPLHLAAQFGHTALVAYLLSK  167 (600)
T ss_pred             HHHHHHHHcCCC--ccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC--ceecCCCCcHHHHHHHhCchHHHHHHHHh
Confidence            466777766644  56655 56899999999999999999999999999  89999999999999999999999999 88


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCccc
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD-KEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQ  160 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d-~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~  160 (399)
                      +++++.+|.+|+||||+|+.+|+...+..|++.++.      ++..| ++|+||||.|+..|+.+++.+|++.|+    +
T Consensus       168 ~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~------~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~----~  237 (600)
T KOG0509|consen  168 GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS------LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGA----D  237 (600)
T ss_pred             cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc------ccccccccCCchHHHHHhcCCcceEehhhhcCC----c
Confidence            899999999999999999999999889999998877      66666 999999999999999999997777777    8


Q ss_pred             ccccccCCCCHHHHHHh
Q 015882          161 IDSKNNQGQTALDICKA  177 (399)
Q Consensus       161 ~~~~n~~g~Tpl~~a~~  177 (399)
                      .+..|.+|+||+++|.+
T Consensus       238 ~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  238 LDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             ccccccCCCCHHHHHHH
Confidence            99999999999999986

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.1e-24  Score=217.09  Aligned_cols=181  Identities=14%  Similarity=0.126  Sum_probs=160.5

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcC---CHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHh
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEG---DGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG-DTGMIREI   79 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G---~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~iv~~L   79 (399)
                      ++++.+.+..  ..++.+|..|.||||+|+..|   +.++++.|++.|+++  +.+|..|.||||+|+..| +.+++++|
T Consensus        28 ~~v~~Ll~~g--a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi--n~~~~~g~TpLh~A~~~~~~~~iv~lL  103 (471)
T PHA03095         28 EEVRRLLAAG--ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV--NAPERCGFTPLHLYLYNATTLDVIKLL  103 (471)
T ss_pred             HHHHHHHHcC--CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCcHHHHHHH
Confidence            5667776654  336888999999999999999   999999999999999  899999999999999999 59999999


Q ss_pred             -hccCCccccccCCchHHHHHH--HcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcC--cHHHHHHHHhCC
Q 015882           80 -ACSESLAKLTSDAETALILAV--KSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK--LIVIVNLLLEGS  154 (399)
Q Consensus        80 -~~~~~~~~~d~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~--~~~iv~~Ll~~g  154 (399)
                       +.|++++.+|..|+||||.|+  ..++.+++++|++.|++      ++.+|..|.||||+|+..+  +.+++++|++.|
T Consensus       104 l~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad------~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095        104 IKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD------VNALDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence             999999999999999999999  56789999999999887      7889999999999998865  689999999999


Q ss_pred             CCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          155 SSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       155 ~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +    +++..|..|+||+|+++...  .+..++++.|+++|++++.
T Consensus       178 ~----~~~~~d~~g~t~Lh~~~~~~--~~~~~i~~~Ll~~g~~~~~  217 (471)
T PHA03095        178 A----DVYAVDDRFRSLLHHHLQSF--KPRARIVRELIRAGCDPAA  217 (471)
T ss_pred             C----CCcccCCCCCCHHHHHHHHC--CCcHHHHHHHHHcCCCCcc
Confidence            9    88888999999999988632  3467889999999988764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.5e-24  Score=224.69  Aligned_cols=179  Identities=18%  Similarity=0.191  Sum_probs=133.0

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcC-CHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHc-CCHHHHHHh-h
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEG-DGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVN-GDTGMIREI-A   80 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G-~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~-g~~~iv~~L-~   80 (399)
                      ++++++.+...  .++.+|.+|.||||+|+..| +.++++.|++.|+++  +.+|..|.||||+|+.. ++.++++.| .
T Consensus       288 ~iv~lLl~~ga--din~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi--n~~d~~g~TpLh~A~~~~~~~~iv~lLl~  363 (682)
T PHA02876        288 RLVPKLLERGA--DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV--NAADRLYITPLHQASTLDRNKDIVITLLE  363 (682)
T ss_pred             HHHHHHHHCCC--CCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC--CCcccCCCcHHHHHHHhCCcHHHHHHHHH
Confidence            45555554432  25666777777777777777 477777777777777  67777777777777764 356777777 7


Q ss_pred             ccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCc-HHHHHHHHhCCCCCcc
Q 015882           81 CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKL-IVIVNLLLEGSSSDII  159 (399)
Q Consensus        81 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~-~~iv~~Ll~~g~~~~v  159 (399)
                      .+++++.+|..|+||||+|+..|+.+++++|++.|++      ++..+..|.||||+|+..++ ..++++|++.|+    
T Consensus       364 ~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad------~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga----  433 (682)
T PHA02876        364 LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD------IEALSQKIGTALHFALCGTNPYMSVKTLIDRGA----  433 (682)
T ss_pred             cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCC----
Confidence            7777777777888888888888888888888877766      66777778888888776554 456778888887    


Q ss_pred             cccccccCCCCHHHHHHhcCCCCc-HHHHHHHHHHccCccCC
Q 015882          160 QIDSKNNQGQTALDICKANSQDSV-SNEIGSILERAAARKQT  200 (399)
Q Consensus       160 ~~~~~n~~g~Tpl~~a~~~~~~~~-~~~i~~~L~~~ga~~~~  200 (399)
                      ++|.+|.+|+||||+|+.    .+ ..+++++|+++|++.+.
T Consensus       434 din~~d~~G~TpLh~Aa~----~~~~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        434 NVNSKNKDLSTPLHYACK----KNCKLDVIEMLLDNGADVNA  471 (682)
T ss_pred             CCCcCCCCCChHHHHHHH----hCCcHHHHHHHHHCCCCCCC
Confidence            888888899999999886    33 57888999999888764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=8.4e-24  Score=217.97  Aligned_cols=177  Identities=15%  Similarity=0.161  Sum_probs=143.3

Q ss_pred             HHHHHhcCCccccccccCCCChHhhHHHhc---CCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCC----------
Q 015882            6 IELAKKDKVQEKDSTQNQNGCTSMHRAPVE---GDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGD----------   72 (399)
Q Consensus         6 i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~----------   72 (399)
                      +|.+..++.+  .+.+|.+|+||||+|+..   |+.++|+.|+++|+++  +.+|..|.||||.|+..|+          
T Consensus        15 ~~~l~~~~~~--~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v--~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~   90 (661)
T PHA02917         15 LKQMLRDRDP--NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP--LHKNWRQLTPLEEYTNSRHVKVNKDIAMA   90 (661)
T ss_pred             HHHHHhccCc--ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc--cccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence            3444444433  467799999999998655   8899999999999999  7899999999998886553          


Q ss_pred             -------------------------HHHHHHh-hccCCccccccCCchHHHHH--HHcCCHHHHHHHHHhhhcccccccc
Q 015882           73 -------------------------TGMIREI-ACSESLAKLTSDAETALILA--VKSSQIDAFKILVEETKRHNREHLF  124 (399)
Q Consensus        73 -------------------------~~iv~~L-~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~~~~~li  124 (399)
                                               .+++++| .+|++++..|.+|+||||.|  +.+|+.+++++|++.|++      +
T Consensus        91 Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~------v  164 (661)
T PHA02917         91 LLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS------V  164 (661)
T ss_pred             HHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC------c
Confidence                                     4667777 78889999999999999965  457899999999999988      4


Q ss_pred             cccCC--------------CCCcHHHHHHH-----------cCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcC
Q 015882          125 NATDK--------------EGNSLLHLAAL-----------NKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANS  179 (399)
Q Consensus       125 n~~d~--------------~G~T~LHlA~~-----------~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~  179 (399)
                      |.+|.              .+.||||+|+.           .++.+++++|++.|+    ++|.+|.+|.||||+|+..+
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga----dvn~~d~~G~TpLh~A~~~g  240 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI----KPSSIDKNYCTALQYYIKSS  240 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC----CcccCCCCCCcHHHHHHHcC
Confidence            43332              23699999986           468999999999999    99999999999999999833


Q ss_pred             CCCcHHHHHHHHHHccCccC
Q 015882          180 QDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       180 ~~~~~~~i~~~L~~~ga~~~  199 (399)
                      .  ...+++++|++ |++..
T Consensus       241 ~--~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        241 H--IDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             C--CcHHHHHHHHh-CCccc
Confidence            2  13589999975 77543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=7e-24  Score=210.08  Aligned_cols=164  Identities=23%  Similarity=0.265  Sum_probs=143.6

Q ss_pred             HHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-h----
Q 015882            6 IELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-A----   80 (399)
Q Consensus         6 i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~----   80 (399)
                      .+.+....  ..++..|+.|.||||.||..++.|..+.|++.|+++  ...|.+|.+|+|.|+++|..|+.+.+ .    
T Consensus       137 L~~Ll~~~--~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~--~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~  212 (929)
T KOG0510|consen  137 LKLLLDYG--ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADP--CKSDIDGNFPIHEAARSGSKECMEIFLPEHGY  212 (929)
T ss_pred             HHHHHHhc--CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCC--CcccCcCCchHHHHHHhcchhhhhhhhccccc
Confidence            34444433  457888999999999999999999889999999999  68899999999999999999999998 4    


Q ss_pred             -ccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhccc---------ccccccccCCCCCcHHHHHHHcCcHHHHHHH
Q 015882           81 -CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN---------REHLFNATDKEGNSLLHLAALNKLIVIVNLL  150 (399)
Q Consensus        81 -~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---------~~~lin~~d~~G~T~LHlA~~~~~~~iv~~L  150 (399)
                       ....++..|++|.||||.|++.|+.++++.+++.++...         ...++|..|++|.||||+|++.|+.+.++.|
T Consensus       213 ~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~L  292 (929)
T KOG0510|consen  213 ERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNL  292 (929)
T ss_pred             hhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHH
Confidence             566788889999999999999999999999999876432         2347899999999999999999999999999


Q ss_pred             HhCCCCCcccccccccCCCCHHHHHHh
Q 015882          151 LEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       151 l~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      +..|+    +++.+|+++.||||.|+.
T Consensus       293 l~~Ga----~I~~kn~d~~spLH~AA~  315 (929)
T KOG0510|consen  293 LGFGA----SINSKNKDEESPLHFAAI  315 (929)
T ss_pred             HHcCC----cccccCCCCCCchHHHHH
Confidence            99999    899999999999998886

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.8e-23  Score=222.73  Aligned_cols=163  Identities=22%  Similarity=0.253  Sum_probs=150.6

Q ss_pred             ccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHH
Q 015882           21 QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILA   99 (399)
Q Consensus        21 ~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A   99 (399)
                      .+.++.++||.||..|+.++++.|++.|.++  +..|.+|.||||+||..|+.+++++| +++++++.+|.+|+||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~--n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP--DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            3456789999999999999999999999999  89999999999999999999999999 99999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcC
Q 015882          100 VKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANS  179 (399)
Q Consensus       100 ~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~  179 (399)
                      +..|+.+++++|++.++.        ..+..|.++||.|+..|+.++++.|+++|+    ++|.+|.+|+||||+|+.  
T Consensus       599 ~~~g~~~iv~~L~~~~~~--------~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga----din~~d~~G~TpLh~A~~--  664 (823)
T PLN03192        599 ISAKHHKIFRILYHFASI--------SDPHAAGDLLCTAAKRNDLTAMKELLKQGL----NVDSEDHQGATALQVAMA--  664 (823)
T ss_pred             HHhCCHHHHHHHHhcCcc--------cCcccCchHHHHHHHhCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHH--
Confidence            999999999999987544        123567799999999999999999999999    999999999999999998  


Q ss_pred             CCCcHHHHHHHHHHccCccCCC
Q 015882          180 QDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       180 ~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                        .++.+++++|+++|++.+..
T Consensus       665 --~g~~~iv~~Ll~~GAdv~~~  684 (823)
T PLN03192        665 --EDHVDMVRLLIMNGADVDKA  684 (823)
T ss_pred             --CCcHHHHHHHHHcCCCCCCC
Confidence              88999999999999987753

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.7e-23  Score=216.97  Aligned_cols=168  Identities=22%  Similarity=0.169  Sum_probs=153.3

Q ss_pred             cccccCCCChHhhHHHhcCCH-HHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHh-hccCCccccccCCch
Q 015882           18 DSTQNQNGCTSMHRAPVEGDG-EMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG-DTGMIREI-ACSESLAKLTSDAET   94 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~-~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~iv~~L-~~~~~~~~~d~~g~t   94 (399)
                      ++..|..|.||||+|+..|+. ++++.|++.|+++  +.+|.+|.||||+|+..| +.++++.| ..+++++..|..|+|
T Consensus       266 vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi--n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~T  343 (682)
T PHA02876        266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV--NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYIT  343 (682)
T ss_pred             CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCc
Confidence            566788999999999999997 6999999999999  899999999999999999 59999999 999999999999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHH
Q 015882           95 ALILAVKS-SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALD  173 (399)
Q Consensus        95 ~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~  173 (399)
                      |||.|+.. ++.+++++|++.|++      +|.+|..|+||||+|+..++.+++++|++.|+    +++..+..|.||||
T Consensus       344 pLh~A~~~~~~~~iv~lLl~~gad------in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ga----d~~~~~~~g~T~Lh  413 (682)
T PHA02876        344 PLHQASTLDRNKDIVITLLELGAN------VNARDYCDKTPIHYAAVRNNVVIINTLLDYGA----DIEALSQKIGTALH  413 (682)
T ss_pred             HHHHHHHhCCcHHHHHHHHHcCCC------CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CccccCCCCCchHH
Confidence            99999985 578899999998877      88999999999999999999999999999999    99999999999999


Q ss_pred             HHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          174 ICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       174 ~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +|+..   .+..+++++|++.|++.+.
T Consensus       414 ~A~~~---~~~~~~vk~Ll~~gadin~  437 (682)
T PHA02876        414 FALCG---TNPYMSVKTLIDRGANVNS  437 (682)
T ss_pred             HHHHc---CCHHHHHHHHHhCCCCCCc
Confidence            99862   3356788999999998764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.4e-23  Score=190.94  Aligned_cols=162  Identities=26%  Similarity=0.281  Sum_probs=143.4

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHc-----CCHHHHHHh-hccCCcccccc-
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVN-----GDTGMIREI-ACSESLAKLTS-   90 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~-----g~~~iv~~L-~~~~~~~~~d~-   90 (399)
                      ++.-|.+|+|+||||+.+++.++|+.||+.|..-. +.+|+-|+||+++||..     .+.++|..| ..+ ++|.+-. 
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~V-D~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDV-DQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccc-cccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            57789999999999999999999999999885443 89999999999999853     357788888 655 4666654 


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCC
Q 015882           91 DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQT  170 (399)
Q Consensus        91 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~T  170 (399)
                      .|+|+|++|+.+|+.++++.|+.-|++      +|.+|.+|.|+|+.|+++|+.+++++||..+.   +|+...|.+|-|
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAd------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~---cd~sLtD~DgST  409 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGAD------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS---CDISLTDVDGST  409 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCC------CccccCCccHHHhhhhhhChHHHHHHHhccCc---ccceeecCCCch
Confidence            599999999999999999999999888      99999999999999999999999999998877   699999999999


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHc
Q 015882          171 ALDICKANSQDSVSNEIGSILERA  194 (399)
Q Consensus       171 pl~~a~~~~~~~~~~~i~~~L~~~  194 (399)
                      +|.+|..    .++.||.-+|..+
T Consensus       410 Al~IAle----agh~eIa~mlYa~  429 (452)
T KOG0514|consen  410 ALSIALE----AGHREIAVMLYAH  429 (452)
T ss_pred             hhhhHHh----cCchHHHHHHHHH
Confidence            9999998    7788888777543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7.8e-23  Score=206.63  Aligned_cols=183  Identities=13%  Similarity=0.150  Sum_probs=156.1

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhc--CCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC------CHH
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVE--GDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG------DTG   74 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~--G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g------~~~   74 (399)
                      .++++.|.+....  ++.. .+|.||||.++..  |+.++|+.|+++|+++  +.++ .+.||||.|+.++      +.+
T Consensus        16 ~~~v~~LL~~Gad--vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv--n~~~-~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         16 KNALEFLLRTGFD--VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV--NYKG-YIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             HHHHHHHHHcCCC--cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc--cCCC-CCCCcHHHHHhccCcchhhHHH
Confidence            4788888876644  5555 5799999876654  3789999999999999  6666 5789999998754      478


Q ss_pred             HHHHh-hccCCccccccCCchHHHHHHHc---CCHHHHHHHHHhhhcccccccc-cccCCCCCcHHHHHHHc--CcHHHH
Q 015882           75 MIREI-ACSESLAKLTSDAETALILAVKS---SQIDAFKILVEETKRHNREHLF-NATDKEGNSLLHLAALN--KLIVIV  147 (399)
Q Consensus        75 iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~li-n~~d~~G~T~LHlA~~~--~~~~iv  147 (399)
                      ++++| +.|++++.+|.+|.||||.|+..   ++.+++++|+++|++      + +.+|..|+||||+|+..  ++.+++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad------in~~~d~~g~tpLh~a~~~~~~~~~iv  163 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN------VNDVKNSRGYNLLHMYLESFSVKKDVI  163 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC------cccccCCCCCCHHHHHHHhccCCHHHH
Confidence            99999 99999999999999999998765   679999999999988      6 68999999999999764  689999


Q ss_pred             HHHHhCCCCCcccccc-cccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          148 NLLLEGSSSDIIQIDS-KNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       148 ~~Ll~~g~~~~v~~~~-~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      ++|++.|+    +++. .|..|.||+|++.......++.+++++|+++|++.+..
T Consensus       164 ~~Ll~~Ga----di~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~  214 (494)
T PHA02989        164 KILLSFGV----NLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN  214 (494)
T ss_pred             HHHHHcCC----CccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc
Confidence            99999999    8888 68899999999987655567899999999999987653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=9.3e-24  Score=197.73  Aligned_cols=155  Identities=21%  Similarity=0.269  Sum_probs=144.9

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHH
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAV  100 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~  100 (399)
                      ..+|-+||-.|+..||.++|+.|+++|+++  |.......|||--||..|+.+++++| +++++++..|..|.|.||+|+
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~V--N~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~  158 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASV--NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC  158 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCcc--ccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee
Confidence            467889999999999999999999999998  77888888999999999999999999 999999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCC
Q 015882          101 KSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQ  180 (399)
Q Consensus       101 ~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~  180 (399)
                      ..||.+++++|++.|++      +|.++..|||+||.+++.|+.+++++|+++|+     .-.+|..|.|||-.|..   
T Consensus       159 ykGh~~I~qyLle~gAD------vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga-----~i~~d~~GmtPL~~Aa~---  224 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGAD------VNAKSYKGNTALHDCAESGSVDIVQLLLKHGA-----KIDVDGHGMTPLLLAAV---  224 (615)
T ss_pred             ccCchHHHHHHHHhCCC------cchhcccCchHHHhhhhcccHHHHHHHHhCCc-----eeeecCCCCchHHHHhh---
Confidence            99999999999999988      89999999999999999999999999999999     44567779999999998   


Q ss_pred             CCcHHHHHHHHHH
Q 015882          181 DSVSNEIGSILER  193 (399)
Q Consensus       181 ~~~~~~i~~~L~~  193 (399)
                       .+..++++.|++
T Consensus       225 -tG~~~iVe~L~~  236 (615)
T KOG0508|consen  225 -TGHTDIVERLLQ  236 (615)
T ss_pred             -hcchHHHHHHhc
Confidence             778888888886

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=8.3e-24  Score=198.06  Aligned_cols=166  Identities=23%  Similarity=0.290  Sum_probs=150.5

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhc-CCCCC------CccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCc
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKL-DPQTG------SVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAE   93 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~------~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~   93 (399)
                      +.+|.|||-+||++||.++|++|+++ ++++.      .+-..-+|-+||-.|+..||.++|+.| ..++++|.......
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNS  118 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNS  118 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCC
Confidence            46788999999999999999999994 33331      011234788999999999999999999 88899999888899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHH
Q 015882           94 TALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALD  173 (399)
Q Consensus        94 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~  173 (399)
                      |||--||.-|+.+++++|+++|++      ++..|..|+|.||+||.+|+.+|+++|++.|+    |+|.++.+|+|+||
T Consensus       119 tPLraACfDG~leivKyLvE~gad------~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA----Dvn~ks~kGNTALH  188 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGAD------PEIANRHGHTCLMIACYKGHVDIAQYLLEQGA----DVNAKSYKGNTALH  188 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCC------CcccccCCCeeEEeeeccCchHHHHHHHHhCC----CcchhcccCchHHH
Confidence            999999999999999999999988      78999999999999999999999999999999    99999999999999


Q ss_pred             HHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          174 ICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       174 ~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      .+++    .++.+++++|+.+|+....+
T Consensus       189 ~caE----sG~vdivq~Ll~~ga~i~~d  212 (615)
T KOG0508|consen  189 DCAE----SGSVDIVQLLLKHGAKIDVD  212 (615)
T ss_pred             hhhh----cccHHHHHHHHhCCceeeec
Confidence            9998    89999999999999987665

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=1.6e-22  Score=215.33  Aligned_cols=158  Identities=20%  Similarity=0.263  Sum_probs=142.2

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+....  ++..|.+|+||||+|+..|+.++++.|+++|+++  +.+|.+|.||||+|+..|+.+++++| ..+
T Consensus       539 ~~l~~Ll~~G~d--~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi--n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~  614 (823)
T PLN03192        539 ALLEELLKAKLD--PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV--HIRDANGNTALWNAISAKHHKIFRILYHFA  614 (823)
T ss_pred             HHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC--CCcCCCCCCHHHHHHHhCCHHHHHHHHhcC
Confidence            456666655433  6889999999999999999999999999999999  89999999999999999999999999 666


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      +..+  ...|.++||.|+.+|+.+++++|++.|++      +|.+|.+|+||||+|+..|+.+++++|+++|+    +++
T Consensus       615 ~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad------in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA----dv~  682 (823)
T PLN03192        615 SISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLN------VDSEDHQGATALQVAMAEDHVDMVRLLIMNGA----DVD  682 (823)
T ss_pred             cccC--cccCchHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC----CCC
Confidence            5443  34578999999999999999999999887      88999999999999999999999999999999    999


Q ss_pred             ccccCC-CCHHHHHHh
Q 015882          163 SKNNQG-QTALDICKA  177 (399)
Q Consensus       163 ~~n~~g-~Tpl~~a~~  177 (399)
                      ..|.+| .||++++..
T Consensus       683 ~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        683 KANTDDDFSPTELREL  698 (823)
T ss_pred             CCCCCCCCCHHHHHHH
Confidence            999988 999998864

>PHA02798 ankyrin-like protein; Provisional

Probab=99.88  E-value=8.2e-22  Score=198.95  Aligned_cols=181  Identities=18%  Similarity=0.223  Sum_probs=154.3

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHh--cCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHc-----CCHHHH
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPV--EGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVN-----GDTGMI   76 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~--~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~-----g~~~iv   76 (399)
                      +.++.+.+...+   +.. .+|.|+++.+..  .++.++|+.|+++|+++  +.+|..|.||||.|+.+     ++.+++
T Consensus        19 ~~v~~ll~~~~~---~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv--n~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         19 STVKLLIKSCNP---NEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANV--NGLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             HHHHHHHhcCCh---hhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCC--CCCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            456666654322   222 457787764443  45899999999999999  89999999999999864     678999


Q ss_pred             HHh-hccCCccccccCCchHHHHHHHcC---CHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCc---HHHHHH
Q 015882           77 REI-ACSESLAKLTSDAETALILAVKSS---QIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKL---IVIVNL  149 (399)
Q Consensus        77 ~~L-~~~~~~~~~d~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~---~~iv~~  149 (399)
                      ++| +.|++++.+|.+|+||||.|+.++   +.+++++|++.|++      ++.+|.+|.||||+|++.++   .+++++
T Consensus        93 ~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad------vn~~d~~g~tpL~~a~~~~~~~~~~vv~~  166 (489)
T PHA02798         93 KILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD------TTLLDKDGFTMLQVYLQSNHHIDIEIIKL  166 (489)
T ss_pred             HHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC------ccccCCCCCcHHHHHHHcCCcchHHHHHH
Confidence            999 999999999999999999999986   78999999999988      88999999999999999987   999999


Q ss_pred             HHhCCCCCcccccccc-cCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          150 LLEGSSSDIIQIDSKN-NQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       150 Ll~~g~~~~v~~~~~n-~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      |++.|+    +++..+ ..|.||+|.+........+.+++++|+++|++...
T Consensus       167 Ll~~ga----din~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~  214 (489)
T PHA02798        167 LLEKGV----DINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK  214 (489)
T ss_pred             HHHhCC----CcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence            999999    899885 57899999998755456689999999999998764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=3.9e-22  Score=172.01  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=125.0

Q ss_pred             cccccCCCChHhhHHHhcCCH----HHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHH---HHHh-hccCCccccc
Q 015882           18 DSTQNQNGCTSMHRAPVEGDG----EMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGM---IREI-ACSESLAKLT   89 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~----~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i---v~~L-~~~~~~~~~d   89 (399)
                      +...+.++.++||.||+.|+.    ++++.|++.++.+  +.+|..|+||||+|+..|+.+.   +++| ..+++++.+|
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~--~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d   90 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL--HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARE   90 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh--hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCC
Confidence            455678889999999999998    6666788888887  7899999999999999998654   7888 9999999998


Q ss_pred             -cCCchHHHHHHHcCCHHHHHHHHH-hhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccC
Q 015882           90 -SDAETALILAVKSSQIDAFKILVE-ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQ  167 (399)
Q Consensus        90 -~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~  167 (399)
                       ..|+||||+|+..|+.+++++|++ .+.+      ++.+|.+|.||||+|+..++.+++++|+++|+    +++.++..
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga----~~~~~~~~  160 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVN------LGAINYQHETAYHIAYKMRDRRMMEILRANGA----VCDDPLSI  160 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCC------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcccC
Confidence             489999999999999999999995 6666      78899999999999999999999999999999    89888887


Q ss_pred             CC
Q 015882          168 GQ  169 (399)
Q Consensus       168 g~  169 (399)
                      |.
T Consensus       161 ~~  162 (166)
T PHA02743        161 GL  162 (166)
T ss_pred             Cc
Confidence            75

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=8e-22  Score=170.71  Aligned_cols=131  Identities=18%  Similarity=0.183  Sum_probs=118.1

Q ss_pred             ccccccCCCChHhhHHHhcCCHHHHHHHhhc------CCCCCCccCCCCCCcHHHHHHHcCC----HHHHHHh-hccCCc
Q 015882           17 KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKL------DPQTGSVVEDNGLTTPLHRAAVNGD----TGMIREI-ACSESL   85 (399)
Q Consensus        17 l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~------~~~~~~~~~d~~g~tpLh~Aa~~g~----~~iv~~L-~~~~~~   85 (399)
                      +++.+|.+|.||||+|+..|+.++++.|+..      +.++  +.+|..|.||||+|+..|+    .+++++| ..++++
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i--n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL--NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh--hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            4667889999999999999999999998642      4666  7899999999999999999    5888888 899999


Q ss_pred             ccccc-CCchHHHHHHHcCCHHHHHHHHHh-hhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           86 AKLTS-DAETALILAVKSSQIDAFKILVEE-TKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        86 ~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      +.++. +|+||||+|+..++.+++++|++. +.+      ++.+|.+|.||||+|+..++.+++++|++.++
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~------~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID------LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            99985 899999999999999999999974 555      78899999999999999999999999999876

>PF13962 PGG: Domain of unknown function

Probab=99.87  E-value=1.4e-22  Score=162.69  Aligned_cols=99  Identities=24%  Similarity=0.432  Sum_probs=83.6

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCCCCCCCCCcccchhhcccCCCceE-EEehhchHHHHHH
Q 015882          214 FWIPIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGELNNHPQGQKFDAKDVISGKLPTVV-YLMIFNSAGFMTA  292 (399)
Q Consensus       214 ~~~~~~~~~s~~vvA~LIATvtFaA~ft~PGG~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~-~F~~~n~~af~~S  292 (399)
                      +| .+++++++++||+|||||||+|++|||||+||+++        .+|+|+     +.+ ++..| +|+++|+++|++|
T Consensus         2 ~~-~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~--------~~G~~i-----l~~-~~~~f~~F~~~nt~af~~S   66 (113)
T PF13962_consen    2 KW-LEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD--------DAGTPI-----LAK-KPSAFKAFLISNTIAFFSS   66 (113)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc--------CCCCch-----hcc-ccchhhhHHHHHHHHHHHH
Confidence            56 89999999999999999999999999999999872        359999     885 67455 9999999999999


Q ss_pred             HHHHHHHHhcc------------hhhHHHHHHHHHHHHHHHhhheee
Q 015882          293 MAAIIILVWRL------------KLRTILLFFVICICVVYVMLVDEV  327 (399)
Q Consensus       293 ~~~~~~l~~~~------------~~~~~~~~~~~~m~~~~~~~~~~v  327 (399)
                      +.++++++++.            .....+++++.+|+++|++++++|
T Consensus        67 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   67 LAAIFLLISGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999988533            112246788999999999998864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=4.7e-21  Score=197.68  Aligned_cols=181  Identities=14%  Similarity=0.075  Sum_probs=144.6

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcC-----------------------------------CHHHHHHHhhc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEG-----------------------------------DGEMIHCLGKL   47 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G-----------------------------------~~~~v~~Ll~~   47 (399)
                      .|++++|.+....  ++.+|.+|+||||+|+..|                                   +.|+|++|+++
T Consensus        48 ~~~v~~Ll~~ga~--v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~  125 (661)
T PHA02917         48 VEVVKLLLDSGTN--PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEH  125 (661)
T ss_pred             HHHHHHHHHCCCC--ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHc
Confidence            4777777765533  4667788888888777644                                   56778888889


Q ss_pred             CCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHh-hccCCccccccC---C-----------chHHHHHHH---------
Q 015882           48 DPQTGSVVEDNGLTTPLHRAA--VNGDTGMIREI-ACSESLAKLTSD---A-----------ETALILAVK---------  101 (399)
Q Consensus        48 ~~~~~~~~~d~~g~tpLh~Aa--~~g~~~iv~~L-~~~~~~~~~d~~---g-----------~t~Lh~A~~---------  101 (399)
                      |+++  +.+|.+|.||||.|+  ..|+.+++++| ++|++++..|..   |           .||||+|+.         
T Consensus       126 Gadi--n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~  203 (661)
T PHA02917        126 GFDL--SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDT  203 (661)
T ss_pred             CCCC--CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccc
Confidence            9999  899999999999654  57899999999 999998765532   3           599999986         


Q ss_pred             --cCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcH--HHHHHHHhCCCCCccccc----ccccCCCCHHH
Q 015882          102 --SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLI--VIVNLLLEGSSSDIIQID----SKNNQGQTALD  173 (399)
Q Consensus       102 --~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~--~iv~~Ll~~g~~~~v~~~----~~n~~g~Tpl~  173 (399)
                        +++.+++++|++.|++      +|.+|.+|+||||+|+..|+.  +++++|++ |+    +.+    ..|..|.||++
T Consensus       204 ~~~~~~eiv~~Li~~Gad------vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~----d~~~~~~~~~~~~~~~~~  272 (661)
T PHA02917        204 RAYVRPEVVKCLINHGIK------PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI----DNTAYSYIDDLTCCTRGI  272 (661)
T ss_pred             cccCcHHHHHHHHHCCCC------cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC----cccccccccCcccccchH
Confidence              5689999999999988      899999999999999999985  79999985 66    443    46667888888


Q ss_pred             HHHhcC-----CCCcHHHHHHHHHHccCcc
Q 015882          174 ICKANS-----QDSVSNEIGSILERAAARK  198 (399)
Q Consensus       174 ~a~~~~-----~~~~~~~i~~~L~~~ga~~  198 (399)
                      +++...     ....+.+++++|+++|++.
T Consensus       273 ~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        273 MADYLNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             HHHHHHhhccccccchHHHHHHHHhCCCCC
Confidence            888311     1123789999999999863

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.86  E-value=2.7e-22  Score=210.08  Aligned_cols=186  Identities=23%  Similarity=0.292  Sum_probs=150.0

Q ss_pred             HHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHh-hcc
Q 015882            5 LIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG-DTGMIREI-ACS   82 (399)
Q Consensus         5 ~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~iv~~L-~~~   82 (399)
                      .++++......  .+..+++|.||||.|+..++.++++.+++++++.  +.++..|+||+|+|++.| +.++...+ +.+
T Consensus       389 ~v~Lll~~ga~--~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~--~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g  464 (1143)
T KOG4177|consen  389 VVELLLEAGAD--PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP--NAKAKLGYTPLHVAAKKGRYLQIARLLLQYG  464 (1143)
T ss_pred             HHHhhhhccCC--cccCCCCCcceeeehhhccCcceEEEEeccCCCh--hhHhhcCCChhhhhhhcccHhhhhhhHhhcC
Confidence            34444433323  6677777888888888888888888888888877  778888888888888888 67777777 888


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhccc---------------------------ccccccccCCCCCcHH
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN---------------------------REHLFNATDKEGNSLL  135 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---------------------------~~~lin~~d~~G~T~L  135 (399)
                      .+++..-+.|.||||+|+..|+.+++..+++.++..+                           ....++.++..|+|||
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpL  544 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPL  544 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchH
Confidence            8888888888888888888888888888887653211                           2345778888999999


Q ss_pred             HHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCCC
Q 015882          136 HLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTAP  202 (399)
Q Consensus       136 HlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~  202 (399)
                      |.|+.+|+..+|++|+++|+    +++.+++.|+||||.|+.    .++.+++++|+++|+..+...
T Consensus       545 h~A~~~g~v~~VkfLLe~gA----dv~ak~~~G~TPLH~Aa~----~G~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  545 HVAVHYGNVDLVKFLLEHGA----DVNAKDKLGYTPLHQAAQ----QGHNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             HHHHhcCCchHHHHhhhCCc----cccccCCCCCChhhHHHH----cChHHHHHHHHHcCCCCCccc
Confidence            99999999999999999999    999999999999999998    778999999999999888763

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=2.3e-21  Score=159.48  Aligned_cols=140  Identities=28%  Similarity=0.247  Sum_probs=130.2

Q ss_pred             HhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHH
Q 015882           28 SMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQID  106 (399)
Q Consensus        28 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~  106 (399)
                      -+.+|+..+..+.|+.||+..++.. +.+|.+|+||||-|+.+|+.+|++.| .++++.+.+...|+||||-||+..+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~v-NtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHV-NTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccc-cccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            4789999999999999999999988 99999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcH-HHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882          107 AFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLI-VIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       107 ~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~-~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      ++..|+++|++      +|++.....||||+||..++. ..+++|+....   +++..+|+.+.||+++|.+
T Consensus       145 va~~LLqhgaD------VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry---i~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  145 VAGRLLQHGAD------VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY---IHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             HHHHHHhccCc------ccccccccchhhHHhhcccchHHHHHHHhhccc---cChhhhcCccchHHHHHHH
Confidence            99999999998      899999999999999987765 46777777666   6899999999999999986

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.86  E-value=1.6e-21  Score=204.33  Aligned_cols=169  Identities=25%  Similarity=0.269  Sum_probs=150.1

Q ss_pred             CccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCC
Q 015882           14 VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDA   92 (399)
Q Consensus        14 ~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g   92 (399)
                      .+...+..-.+|.||||.|+..|+.++++.+++.++..  +...+.|.+++|.|+..+...+++.+ ..+...+.++.+|
T Consensus       463 ~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~--~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~  540 (1143)
T KOG4177|consen  463 YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND--NLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRG  540 (1143)
T ss_pred             cCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc--CccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccc
Confidence            34446666777888888888888888888888877666  66777788888888888888888888 8888899999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHH
Q 015882           93 ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL  172 (399)
Q Consensus        93 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl  172 (399)
                      .||||.|+.+|+.++|++|+++|++      ++.+|+.|+||||.||..|+.+++++|+++|+    ++|..|.+|.|||
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~gAd------v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA----~vna~d~~g~TpL  610 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEHGAD------VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGA----SVNAADLDGFTPL  610 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhCCcc------ccccCCCCCChhhHHHHcChHHHHHHHHHcCC----CCCcccccCcchh
Confidence            9999999999999999999999988      89999999999999999999999999999999    9999999999999


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHccCcc
Q 015882          173 DICKANSQDSVSNEIGSILERAAARK  198 (399)
Q Consensus       173 ~~a~~~~~~~~~~~i~~~L~~~ga~~  198 (399)
                      ++|..    .+..++++.|...++..
T Consensus       611 ~iA~~----lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  611 HIAVR----LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             HHHHH----hcccchhhHHHhccCcc
Confidence            99998    78889999999999884

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=5.4e-21  Score=164.90  Aligned_cols=139  Identities=20%  Similarity=0.194  Sum_probs=122.1

Q ss_pred             cCCCCCCccCCCCCCcHHHHHHHcCCH----HHHHHh-hccCCccccccCCchHHHHHHHcCCHHH---HHHHHHhhhcc
Q 015882           47 LDPQTGSVVEDNGLTTPLHRAAVNGDT----GMIREI-ACSESLAKLTSDAETALILAVKSSQIDA---FKILVEETKRH  118 (399)
Q Consensus        47 ~~~~~~~~~~d~~g~tpLh~Aa~~g~~----~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~  118 (399)
                      ++.++  +..+.++.+++|.|++.|+.    +++++| ..+..++.+|.+|+||||+|+.+|+.+.   +++|++.|++ 
T Consensus         9 ~~~~~--~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-   85 (166)
T PHA02743          9 NNLGA--VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-   85 (166)
T ss_pred             cchHH--hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-
Confidence            34555  56778888999999999998    566677 8888899999999999999999998654   7899999887 


Q ss_pred             cccccccccC-CCCCcHHHHHHHcCcHHHHHHHHh-CCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccC
Q 015882          119 NREHLFNATD-KEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAA  196 (399)
Q Consensus       119 ~~~~lin~~d-~~G~T~LHlA~~~~~~~iv~~Ll~-~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga  196 (399)
                           +|.+| ..|+||||+|+..++.+++++|++ .++    +++.+|.+|.||||+|+.    .++.+++++|+++|+
T Consensus        86 -----in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~g~tpL~~A~~----~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         86 -----INARELGTGNTLLHIAASTKNYELAEWLCRQLGV----NLGAINYQHETAYHIAYK----MRDRRMMEILRANGA  152 (166)
T ss_pred             -----CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC----CccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCC
Confidence                 78888 589999999999999999999995 788    899999999999999998    778899999999999


Q ss_pred             ccCCC
Q 015882          197 RKQTA  201 (399)
Q Consensus       197 ~~~~~  201 (399)
                      +....
T Consensus       153 ~~~~~  157 (166)
T PHA02743        153 VCDDP  157 (166)
T ss_pred             CCCCc
Confidence            88753

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=4.9e-21  Score=165.79  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=117.4

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHh-h------ccCCccccccCCchHHHHHHHcCC----HHHHHHHHHhhhcccccc
Q 015882           54 VVEDNGLTTPLHRAAVNGDTGMIREI-A------CSESLAKLTSDAETALILAVKSSQ----IDAFKILVEETKRHNREH  122 (399)
Q Consensus        54 ~~~d~~g~tpLh~Aa~~g~~~iv~~L-~------~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~  122 (399)
                      +.+|..|.||||+|+..|+.++++.| .      .+++++.+|..|+||||+|+..|+    .+++++|++.|++     
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-----   89 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-----   89 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-----
Confidence            45788999999999999999999987 2      257789999999999999999999    5888999998877     


Q ss_pred             cccccCC-CCCcHHHHHHHcCcHHHHHHHHh-CCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCcc
Q 015882          123 LFNATDK-EGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK  198 (399)
Q Consensus       123 lin~~d~-~G~T~LHlA~~~~~~~iv~~Ll~-~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~  198 (399)
                       +|.+|. +|+||||+|+..++.+++++|++ .++    +++.+|.+|+||+|+|..    .++.+++++|++.++..
T Consensus        90 -in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~----~~~~~n~~g~tpL~~A~~----~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         90 -INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGI----DLHFCNADNKSPFELAID----NEDVAMMQILREIVATS  158 (169)
T ss_pred             -CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCcCCCCCCCHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence             788885 89999999999999999999997 477    899999999999999998    77889999999987654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1e-20  Score=176.11  Aligned_cols=155  Identities=14%  Similarity=0.100  Sum_probs=132.8

Q ss_pred             cccccCCCChH-hhHHHhcCCHHHHHHHhhcCCCCCCccC----CCCCCcHHHHHHHcCCHHHHHHh-hccCCccccc-c
Q 015882           18 DSTQNQNGCTS-MHRAPVEGDGEMIHCLGKLDPQTGSVVE----DNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLT-S   90 (399)
Q Consensus        18 ~~~~d~~G~Tp-Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~----d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d-~   90 (399)
                      ...+|..|.|+ ||.|+..|+.++++.|+++|+++  +.+    +..|.||||+|+..|+.+++++| .+|++++.++ .
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi--N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP--EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc--cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC
Confidence            45677778774 66677779999999999999999  665    46899999999999999999999 9999999864 5


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCC
Q 015882           91 DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQT  170 (399)
Q Consensus        91 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~T  170 (399)
                      .|.||||.|+..++.+++++|++.|++      ++.+|.+|.||||+|++.++.+++..+.  +.       ..+..+.+
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAd------in~kd~~G~TpL~~A~~~~~~~~~~~~~--~~-------~~~~~~~~  167 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGAD------INIQTNDMVTPIELALMICNNFLAFMIC--DN-------EISNFYKH  167 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHhCChhHHHHhc--CC-------cccccccC
Confidence            799999999999999999999999988      8899999999999999999888876664  22       24667788


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHccC
Q 015882          171 ALDICKANSQDSVSNEIGSILERAAA  196 (399)
Q Consensus       171 pl~~a~~~~~~~~~~~i~~~L~~~ga  196 (399)
                      |.++..       +.|+.+.|+.++.
T Consensus       168 ~~~~~~-------n~ei~~~Lish~v  186 (300)
T PHA02884        168 PKKILI-------NFDILKILVSHFI  186 (300)
T ss_pred             hhhhhc-------cHHHHHHHHHHHH
Confidence            888652       4788999999887

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.3e-20  Score=190.35  Aligned_cols=182  Identities=17%  Similarity=0.179  Sum_probs=152.9

Q ss_pred             hhHHHHHHHhcCCccccccccCCCChHhhH--HHhcCCHHHHHHHhh--------------------------------c
Q 015882            2 SNELIELAKKDKVQEKDSTQNQNGCTSMHR--APVEGDGEMIHCLGK--------------------------------L   47 (399)
Q Consensus         2 ~~e~i~~l~~~~~~~l~~~~d~~G~TpLh~--Aa~~G~~~~v~~Ll~--------------------------------~   47 (399)
                      ..|++++|.+....  ++.+|.+|.||||+  |...|+.|+|+.|++                                +
T Consensus       214 ~~eiv~lLIs~Gad--IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (672)
T PHA02730        214 SKDVIKCLIDNNVS--IHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPY  291 (672)
T ss_pred             CHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccC
Confidence            36899999988854  89999999999995  556788999999999                                5


Q ss_pred             CCCCCCcc--------------------CCCCCCc---------------------HHHHHHHcC---CHHHHHHh-hcc
Q 015882           48 DPQTGSVV--------------------EDNGLTT---------------------PLHRAAVNG---DTGMIREI-ACS   82 (399)
Q Consensus        48 ~~~~~~~~--------------------~d~~g~t---------------------pLh~Aa~~g---~~~iv~~L-~~~   82 (399)
                      |.+.  ..                    .+..|.+                     .||.-...+   +.+++++| .+|
T Consensus       292 ~~d~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G  369 (672)
T PHA02730        292 NVDM--EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG  369 (672)
T ss_pred             Ccch--HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC
Confidence            6666  34                    5666765                     778777766   58999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCC----HHHHHHHHHhhhcccccccccccCCCCCcHHHH---HHHcC---------cHHH
Q 015882           83 ESLAKLTSDAETALILAVKSSQ----IDAFKILVEETKRHNREHLFNATDKEGNSLLHL---AALNK---------LIVI  146 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHl---A~~~~---------~~~i  146 (399)
                      ++++.. ..|+||||.|+..++    .+++++|+++|++.    .+|.+|.+|.||||.   |...+         ..++
T Consensus       370 AdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~----dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~i  444 (672)
T PHA02730        370 ATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM----AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDV  444 (672)
T ss_pred             CCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc----cccccccCCCchHhHHHHHHhccccccccchhHHHH
Confidence            999985 789999999998875    89999999998641    278999999999994   33332         2357


Q ss_pred             HHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          147 VNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       147 v~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +++|+++|+    ++|.+|+.|+||||+|+.    .++.+++++|+++|++.+.
T Consensus       445 vk~LIs~GA----DINakD~~G~TPLh~Aa~----~~~~eive~LI~~GAdIN~  490 (672)
T PHA02730        445 FDILSKYMD----DIDMIDNENKTLLYYAVD----VNNIQFARRLLEYGASVNT  490 (672)
T ss_pred             HHHHHhccc----chhccCCCCCCHHHHHHH----hCCHHHHHHHHHCCCCCCC
Confidence            999999999    999999999999999998    7788999999999998874

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.9e-20  Score=180.97  Aligned_cols=177  Identities=10%  Similarity=-0.000  Sum_probs=149.2

Q ss_pred             HHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCc------cCCCCCCcHHHHHHH--cCCHHHH
Q 015882            5 LIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSV------VEDNGLTTPLHRAAV--NGDTGMI   76 (399)
Q Consensus         5 ~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~------~~d~~g~tpLh~Aa~--~g~~~iv   76 (399)
                      +.+++.+...+  ++..+.+|     +|+..+..|+++.|+.+|.++  +      .+++.++|+||+|+.  .|+.+++
T Consensus        64 ~~~~~~~~~~~--i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~--~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV  134 (437)
T PHA02795         64 LYDYFRIHRDN--IDQYIVDR-----LFAYITYKDIISALVSKNYME--DIFSIIIKNCNSVQDLLLYYLSNAYVEIDIV  134 (437)
T ss_pred             HHHHHHHcCcc--hhhhhhhh-----HHhhcchHHHHHHHHhccccc--chhhhhhhccccccHHHHHHHHhcCCCHHHH
Confidence            34444444432  44445555     999999999999999999997  5      688899999999999  8999999


Q ss_pred             HHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           77 REI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        77 ~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      ++| .+|++++..  ++.||||.|+.+++.+++++|+++|++.......+..+..|.|++|.|+..++.+++++|+++|+
T Consensus       135 ~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA  212 (437)
T PHA02795        135 DFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE  212 (437)
T ss_pred             HHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC
Confidence            999 999999874  55899999999999999999999987522111122234568899999999999999999999999


Q ss_pred             CCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          156 SDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       156 ~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                          ++|.+|.+|+||||+|+.    .++.+++++|+++|++.+.
T Consensus       213 ----DIN~kD~~G~TpLh~Aa~----~g~~eiVelLL~~GAdIN~  249 (437)
T PHA02795        213 ----DINQLDAGGRTLLYRAIY----AGYIDLVSWLLENGANVNA  249 (437)
T ss_pred             ----CcCcCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence                999999999999999998    8899999999999998875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=3.4e-21  Score=164.21  Aligned_cols=132  Identities=11%  Similarity=0.032  Sum_probs=110.2

Q ss_pred             cccccccCCCChHhhHHHhcCCHHHHHHHhhcCC--CC---CCccCCCCCCcHHHHHHHcCCHH---HHHHh-hccCCcc
Q 015882           16 EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDP--QT---GSVVEDNGLTTPLHRAAVNGDTG---MIREI-ACSESLA   86 (399)
Q Consensus        16 ~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~--~~---~~~~~d~~g~tpLh~Aa~~g~~~---iv~~L-~~~~~~~   86 (399)
                      .+.+.+|.+|.||||+|+..|+.  ++.+...+.  +.   ....+|.+|.||||+|+..|+.+   ++++| ..+++++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            35677889999999999999984  333322221  11   01456899999999999999874   67788 9999999


Q ss_pred             cccc-CCchHHHHHHHcCCHHHHHHHHHh-hhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           87 KLTS-DAETALILAVKSSQIDAFKILVEE-TKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        87 ~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      .+|. +|+||||+|+..++.+++++|++. +.+      ++.+|..|.||||+|+..++.+++++|++.|+
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d------~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVN------MEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC------CccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9984 899999999999999999999974 555      78999999999999999999999999999998

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=5.4e-21  Score=162.97  Aligned_cols=132  Identities=16%  Similarity=0.156  Sum_probs=111.3

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHh------hccCCccccccCCchHHHHHHHcCCHH---HHHHHHHhhhcccccccc
Q 015882           54 VVEDNGLTTPLHRAAVNGDTGMIREI------ACSESLAKLTSDAETALILAVKSSQID---AFKILVEETKRHNREHLF  124 (399)
Q Consensus        54 ~~~d~~g~tpLh~Aa~~g~~~iv~~L------~~~~~~~~~d~~g~t~Lh~A~~~g~~~---~v~~Ll~~~~~~~~~~li  124 (399)
                      +.+|.+|.||||+|++.|+.+.+...      ..+..++.+|.+|+||||+|+..|+.+   ++++|++.|++      +
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad------i   84 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD------I   84 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC------c
Confidence            56788999999999999984322111      112335567899999999999999874   68899998877      7


Q ss_pred             cccC-CCCCcHHHHHHHcCcHHHHHHHHhC-CCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          125 NATD-KEGNSLLHLAALNKLIVIVNLLLEG-SSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       125 n~~d-~~G~T~LHlA~~~~~~~iv~~Ll~~-g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      |.+| .+|+||||+|++.++.+++++|++. ++    +++.+|..|+||+|+|+.    .++.+++++|++.|++..
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~----d~n~~~~~g~tpL~~A~~----~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGV----NMEILNYAFKTPYYVACE----RHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC----CCccccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            8888 4899999999999999999999975 77    899999999999999998    778999999999998764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.84  E-value=5.1e-20  Score=186.18  Aligned_cols=188  Identities=13%  Similarity=0.071  Sum_probs=145.7

Q ss_pred             HHHHHHhcCCccccccccCCCChHhhHHHhcC---CHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHh
Q 015882            5 LIELAKKDKVQEKDSTQNQNGCTSMHRAPVEG---DGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG--DTGMIREI   79 (399)
Q Consensus         5 ~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G---~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~L   79 (399)
                      .+++..+.... +-+.+|.+|+||||+|+..|   +.|+|+.|+++|+++  +.+|.+|.||||+|+..+  +.|++++|
T Consensus        22 ~~~~~~~~~~~-in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi--n~kD~~G~TPLh~Aa~~~~~~~eIv~~L   98 (672)
T PHA02730         22 KIKLEIETCHN-LSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER--LCRNNEGLTPLGVYSKRKYVKSQIVHLL   98 (672)
T ss_pred             HHHHHHHHhcc-hhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC--cccCCCCCChHHHHHHcCCCcHHHHHHH
Confidence            34444444422 22588899999999999997   599999999999999  899999999999999977  79999999


Q ss_pred             -hcc--CCccccccCCchHHHHHHH--cCCHHHHHHHHH-hhhcccccccccccCC-CCCcHHHHHHHcCcHHHHHHHHh
Q 015882           80 -ACS--ESLAKLTSDAETALILAVK--SSQIDAFKILVE-ETKRHNREHLFNATDK-EGNSLLHLAALNKLIVIVNLLLE  152 (399)
Q Consensus        80 -~~~--~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~-~~~~~~~~~lin~~d~-~G~T~LHlA~~~~~~~iv~~Ll~  152 (399)
                       ..+  ++.+..+..+.+|||.++.  +++.+++++|++ .+.+++  ...+.+|. +|-+|+++|...++.++|++|++
T Consensus        99 l~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~--~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~  176 (672)
T PHA02730         99 ISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPS--KNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLK  176 (672)
T ss_pred             HhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChh--hhhhhhccccchhhhhHhcCCCchHHHHHHHH
Confidence             774  4557778789999999888  999999999997 434421  12223333 89999999999999999999999


Q ss_pred             CCCCCccccc-------ccccCCC-CHHHHHHhc--CCCCcHHHHHHHHHHccCccCCC
Q 015882          153 GSSSDIIQID-------SKNNQGQ-TALDICKAN--SQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       153 ~g~~~~v~~~-------~~n~~g~-Tpl~~a~~~--~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      .|+    +++       ..|..+. |.||+..-.  .......|++++|+++||+.+..
T Consensus       177 ~g~----~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~k  231 (672)
T PHA02730        177 SEC----YSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGR  231 (672)
T ss_pred             cCC----cccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCC
Confidence            999    553       2444444 556644421  13466889999999999987743

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=8e-21  Score=161.99  Aligned_cols=141  Identities=19%  Similarity=0.195  Sum_probs=121.7

Q ss_pred             CCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHH
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVK  101 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~  101 (399)
                      --+++|+.+++..-+++.+..+.+.  .+  +..|+.|.|||.+|+..|++++|++| +.|++++...+..+++|.+|++
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~~n--~V--N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~  202 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLVNN--KV--NACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATR  202 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHhhc--cc--cCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhc
Confidence            3344444444444444444443332  22  77899999999999999999999999 9999999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882          102 SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       102 ~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      .|..+++++|++++.+      +|..|.+|-|||-+|++.++.++++.|+..|+    +++..+..|++++++|..
T Consensus       203 ggytdiV~lLL~r~vd------VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA----d~t~e~dsGy~~mdlAVa  268 (296)
T KOG0502|consen  203 GGYTDIVELLLTREVD------VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA----DVTQEDDSGYWIMDLAVA  268 (296)
T ss_pred             CChHHHHHHHHhcCCC------cceeccCCCceeeeeecCChHHHHHHHHhcCC----CcccccccCCcHHHHHHH
Confidence            9999999999998766      99999999999999999999999999999999    999999999999999997

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.82  E-value=8.5e-21  Score=161.84  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=137.4

Q ss_pred             ccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCc
Q 015882           15 QEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAE   93 (399)
Q Consensus        15 ~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~   93 (399)
                      ...++..|+.|.|||.+|+..|++++|++|++.|+++  ....+...++|.+|++.|..++|+.| .+..++|..|-+|-
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp--~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGg  227 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP--DALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGG  227 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh--hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCC
Confidence            4558899999999999999999999999999999999  88999999999999999999999999 99999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHH
Q 015882           94 TALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALD  173 (399)
Q Consensus        94 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~  173 (399)
                      |||.+|++.+|.++++.|+..|++      ++..|..|++++.+|+..|+. +|+..++.-.    +++.+|+.-+||+|
T Consensus       228 TpLlyAvrgnhvkcve~Ll~sGAd------~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~----lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVESLLNSGAD------VTQEDDSGYWIMDLAVALGYR-IVQQVIEKHA----LKLCQDSEKRTPLH  296 (296)
T ss_pred             ceeeeeecCChHHHHHHHHhcCCC------cccccccCCcHHHHHHHhhhH-HHHHHHHHHH----HHHhhcccCCCCCC
Confidence            999999999999999999999988      788999999999999999987 8888888877    88888988888875

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=3.8e-20  Score=176.77  Aligned_cols=148  Identities=26%  Similarity=0.332  Sum_probs=137.6

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccc-------
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLT-------   89 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d-------   89 (399)
                      .+..|.+|.|+||-+|...+.+||++|+++|+++  +..|..|+||||.|+..|+..++++| ..++++..+|       
T Consensus        66 ~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V--n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~  143 (527)
T KOG0505|consen   66 PNLCNVDGLTALHQACIDDNLEMVKFLVENGANV--NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPY  143 (527)
T ss_pred             ccccCCccchhHHHHHhcccHHHHHHHHHhcCCc--cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcc
Confidence            3778899999999999999999999999999999  89999999999999999999999999 6666544333       


Q ss_pred             ----------------------------------------------------cCCchHHHHHHHcCCHHHHHHHHHhhhc
Q 015882           90 ----------------------------------------------------SDAETALILAVKSSQIDAFKILVEETKR  117 (399)
Q Consensus        90 ----------------------------------------------------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  117 (399)
                                                                          .+|.|.||+|+.+|..++.++|++.|.+
T Consensus       144 dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  144 DLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS  223 (527)
T ss_pred             ccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC
Confidence                                                                4589999999999999999999999887


Q ss_pred             ccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882          118 HNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       118 ~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                            ++.+|.+|+||||.|+..|+.+++++|+++++    +++..+..|+||++++..
T Consensus       224 ------~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga----~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  224 ------VNIKDYDGWTPLHAAAHWGQEDACELLVEHGA----DMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ------cccccccCCCcccHHHHhhhHhHHHHHHHhhc----ccchhhhcCCCCccchhh
Confidence                  88999999999999999999999999999999    999999999999999975

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=1.7e-20  Score=166.00  Aligned_cols=152  Identities=22%  Similarity=0.274  Sum_probs=126.2

Q ss_pred             HhcCCHHHHHHHhh-cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHH
Q 015882           33 PVEGDGEMIHCLGK-LDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKI  110 (399)
Q Consensus        33 a~~G~~~~v~~Ll~-~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  110 (399)
                      |+.|+.--|+.-++ ...|+  +.-|+.|.+|||+||+.|+..+++.| ..|+.++..|....||||+|+.+||.++++.
T Consensus         8 cregna~qvrlwld~tehdl--n~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDL--NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCccccc--ccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHH
Confidence            34444433444443 34455  78899999999999999999999999 9999999999999999999999999999999


Q ss_pred             HHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHH
Q 015882          111 LVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSI  190 (399)
Q Consensus       111 Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~  190 (399)
                      |++..++      +|..+..|+|||||||..|+.++.+-|+..|+    .+++.|++|.||++.|..    .-...+.+.
T Consensus        86 ll~~kad------vnavnehgntplhyacfwgydqiaedli~~ga----~v~icnk~g~tpldkakp----~l~~~l~e~  151 (448)
T KOG0195|consen   86 LLSRKAD------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGA----AVNICNKKGMTPLDKAKP----MLKNTLLEI  151 (448)
T ss_pred             HHHHhcc------cchhhccCCCchhhhhhhcHHHHHHHHHhccc----eeeecccCCCCchhhhch----HHHHHHHHH
Confidence            9998776      99999999999999999999999999999999    999999999999998864    323344455


Q ss_pred             HHHccCccCC
Q 015882          191 LERAAARKQT  200 (399)
Q Consensus       191 L~~~ga~~~~  200 (399)
                      -.++|...+.
T Consensus       152 aek~gq~~nr  161 (448)
T KOG0195|consen  152 AEKHGQSPNR  161 (448)
T ss_pred             HHHhCCCCCc
Confidence            5566655543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.82  E-value=4.5e-20  Score=181.99  Aligned_cols=173  Identities=19%  Similarity=0.188  Sum_probs=153.7

Q ss_pred             ccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchH
Q 015882           17 KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETA   95 (399)
Q Consensus        17 l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~   95 (399)
                      ..+..|.+|.|+||.|+.+|+.+++++|+++.+-+  ...|..|.+|||+||+.|+.|+++.+ ...+.++..+.+|.||
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~l--dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL--DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP  118 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhh--hhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence            35677899999999999999999999999998888  78999999999999999999999999 7778899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC----CCcccccccccCCCCH
Q 015882           96 LILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS----SDIIQIDSKNNQGQTA  171 (399)
Q Consensus        96 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~----~~~v~~~~~n~~g~Tp  171 (399)
                      ||.|+++||.+++.+|++++++      .-.+|+++.|+|-+|++.|..++++.|++..-    ...+.-..++-.+-+|
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~ad------p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~p  192 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNAD------PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYP  192 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCC------ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCC
Confidence            9999999999999999999988      45789999999999999999999999998732    1111223455667899


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          172 LDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       172 l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      +|+|++    +++.++++.|+++|.+.+..
T Consensus       193 lHlaak----ngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  193 LHLAAK----NGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             cchhhh----cchHHHHHHHHhcCCCcccc
Confidence            999999    88999999999999988865

>PHA02792 ankyrin-like protein; Provisional

Probab=99.81  E-value=7.6e-19  Score=175.97  Aligned_cols=168  Identities=11%  Similarity=0.028  Sum_probs=141.6

Q ss_pred             ccccccCCCChHhhHHHhcC-------CHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHh-hccCC--
Q 015882           17 KDSTQNQNGCTSMHRAPVEG-------DGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG--DTGMIREI-ACSES--   84 (399)
Q Consensus        17 l~~~~d~~G~TpLh~Aa~~G-------~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~L-~~~~~--   84 (399)
                      ..+..|+.|.||||+|+..+       +.|+++.|+++|+++  +.+|..|.||||+|+.+.  +.|+++.| ..+.+  
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~--~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~  244 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM--RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGN  244 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc--CccCCCCChHHHHHHHcccchHHHHHHHHhcccccc
Confidence            45577889999999999999       899999999999999  889999999999999999  78889888 32211  


Q ss_pred             --------------------cc--ccc-----------------------------------------------------
Q 015882           85 --------------------LA--KLT-----------------------------------------------------   89 (399)
Q Consensus        85 --------------------~~--~~d-----------------------------------------------------   89 (399)
                                          ++  .++                                                     
T Consensus       245 ~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiI  324 (631)
T PHA02792        245 ELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVI  324 (631)
T ss_pred             chHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHH
Confidence                                11  000                                                     


Q ss_pred             ------------cCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCC--CcHHHHHHHcCcH---HHHHHHHh
Q 015882           90 ------------SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG--NSLLHLAALNKLI---VIVNLLLE  152 (399)
Q Consensus        90 ------------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G--~T~LHlA~~~~~~---~iv~~Ll~  152 (399)
                                  ..+.+++|.|+..|+.+++++|+++|++      +|.+|.+|  .||||.|+.....   +++++|++
T Consensus       325 K~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD------IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        325 KCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV------VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc------hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence                        1345678889999999999999999988      78888775  6999998876654   46889999


Q ss_pred             CCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          153 GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       153 ~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +|+    ++|.+|..|.||||+|+.    .++.+++++|+++|++.+.
T Consensus       399 ~GA----DIN~kD~~G~TPLh~Aa~----~~n~eivelLLs~GADIN~  438 (631)
T PHA02792        399 YID----DINKIDKHGRSILYYCIE----SHSVSLVEWLIDNGADINI  438 (631)
T ss_pred             cCC----ccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            999    999999999999999998    7789999999999998774

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.81  E-value=2.7e-19  Score=189.45  Aligned_cols=183  Identities=17%  Similarity=0.100  Sum_probs=133.2

Q ss_pred             HHHHHhcCCccccccccCCCChHhh-HHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCC---HHHHHHh-h
Q 015882            6 IELAKKDKVQEKDSTQNQNGCTSMH-RAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGD---TGMIREI-A   80 (399)
Q Consensus         6 i~~l~~~~~~~l~~~~d~~G~TpLh-~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~---~~iv~~L-~   80 (399)
                      ++.+.++..+..++..|..|+|||| .|+..++.++++.|++++.      .+..|.||||.|+.+++   .++++.+ .
T Consensus        33 v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~  106 (743)
T TIGR00870        33 VYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLA  106 (743)
T ss_pred             HHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhh
Confidence            3444333224456778899999999 8888999999999999875      56789999999998332   2334444 2


Q ss_pred             ccCC------cc----ccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccc------c--ccCCCCCcHHHHHHHcC
Q 015882           81 CSES------LA----KLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLF------N--ATDKEGNSLLHLAALNK  142 (399)
Q Consensus        81 ~~~~------~~----~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~li------n--~~d~~G~T~LHlA~~~~  142 (399)
                      .+..      .+    ..+..|.||||+|+.+|+.+++++|+++|++.+....-      .  .....|.||||.|+..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~  186 (743)
T TIGR00870       107 AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG  186 (743)
T ss_pred             cccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhC
Confidence            2211      11    12346999999999999999999999999884311000      0  11136999999999999


Q ss_pred             cHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCC-----cHHHHHHHHHHccCcc
Q 015882          143 LIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDS-----VSNEIGSILERAAARK  198 (399)
Q Consensus       143 ~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~-----~~~~i~~~L~~~ga~~  198 (399)
                      +.+++++|++.|+    +++.+|+.|+||+|+|+..+...     ...++.+++++.++..
T Consensus       187 ~~~iv~lLl~~ga----din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       187 SPSIVALLSEDPA----DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             CHHHHHHHhcCCc----chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999    99999999999999999733111     1234666777666653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.80  E-value=1.4e-19  Score=191.53  Aligned_cols=178  Identities=20%  Similarity=0.120  Sum_probs=134.6

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcC---CHHHHHHHhhcCCCC-----C---CccCCCCCCcHHHHHHHcC
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEG---DGEMIHCLGKLDPQT-----G---SVVEDNGLTTPLHRAAVNG   71 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G---~~~~v~~Ll~~~~~~-----~---~~~~d~~g~tpLh~Aa~~g   71 (399)
                      .+++++|.+...      .+..|.||||.|+..+   ..++++.+.+.+++.     .   ....+..|.||||+|+.+|
T Consensus        66 ~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~  139 (743)
T TIGR00870        66 LELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQ  139 (743)
T ss_pred             HHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhC
Confidence            367777766543      6788999999998722   223334444433321     0   0122357999999999999


Q ss_pred             CHHHHHHh-hccCCccccc--------------cCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHH
Q 015882           72 DTGMIREI-ACSESLAKLT--------------SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLH  136 (399)
Q Consensus        72 ~~~iv~~L-~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LH  136 (399)
                      +.++++.| +++++++.++              ..|+||||.|+..|+.+++++|++.|++      +|.+|..|+||||
T Consensus       140 ~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad------in~~d~~g~T~Lh  213 (743)
T TIGR00870       140 NYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD------ILTADSLGNTLLH  213 (743)
T ss_pred             CHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc------hhhHhhhhhHHHH
Confidence            99999999 9899888653              3589999999999999999999998876      8899999999999


Q ss_pred             HHHHcC---------cHHHHHHHHhCCCCCcccc----cccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCc
Q 015882          137 LAALNK---------LIVIVNLLLEGSSSDIIQI----DSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR  197 (399)
Q Consensus       137 lA~~~~---------~~~iv~~Ll~~g~~~~v~~----~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~  197 (399)
                      +|+..+         ..++.+++++.++.. -+.    +..|++|.||+|+|+.    .++.++.+.|++.+.+
T Consensus       214 ~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~-~~~~el~~i~N~~g~TPL~~A~~----~g~~~l~~lLL~~~~~  282 (743)
T TIGR00870       214 LLVMENEFKAEYEELSCQMYNFALSLLDKL-RDSKELEVILNHQGLTPLKLAAK----EGRIVLFRLKLAIKYK  282 (743)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CChHhhhhhcCCCCCCchhhhhh----cCCccHHHHHHHHHHh
Confidence            999986         234556666655410 023    7789999999999998    7788899999986543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.78  E-value=5.6e-18  Score=169.78  Aligned_cols=130  Identities=16%  Similarity=0.213  Sum_probs=110.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHh-hccCCccccccCC--chHHHHHHHcCCHH---HHHHHHHhhhcccccccccccCCCCCc
Q 015882           60 LTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDA--ETALILAVKSSQID---AFKILVEETKRHNREHLFNATDKEGNS  133 (399)
Q Consensus        60 g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g--~t~Lh~A~~~g~~~---~v~~Ll~~~~~~~~~~lin~~d~~G~T  133 (399)
                      ...++|.||..|+.+++++| .+|++++.+|.+|  .||||.|......+   +++++++.|++      +|.+|..|+|
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD------IN~kD~~G~T  412 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD------INKIDKHGRS  412 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc------cccccccCcc
Confidence            55678999999999999999 9999999998875  69999987766654   57888888887      8999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCC------CCcHHHHHHHHHHccCccC
Q 015882          134 LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQ------DSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       134 ~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~------~~~~~~i~~~L~~~ga~~~  199 (399)
                      |||+|+..++.+++++|+++|+    +++.+|..|+||+|+|.....      .....++.++|+++|....
T Consensus       413 PLh~Aa~~~n~eivelLLs~GA----DIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        413 ILYYCIESHSVSLVEWLIDNGA----DINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             hHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999999999    999999999999999974111      0123578889998886554

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.76  E-value=1.5e-18  Score=171.36  Aligned_cols=186  Identities=20%  Similarity=0.146  Sum_probs=159.7

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      +++++++.+.+.+  ++..|.+|.+|||+|+-.|+.|++++++.++..+  +..+.+|.||||.|+++||.+++.+| .+
T Consensus        62 ~~is~llle~ea~--ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~--na~~~e~~tplhlaaqhgh~dvv~~Ll~~  137 (854)
T KOG0507|consen   62 NQISKLLLDYEAL--LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL--NAVNIENETPLHLAAQHGHLEVVFYLLKK  137 (854)
T ss_pred             hHHHHHHhcchhh--hhhhhccCcceEEehhhcCcchHHHHHHhcccCC--CcccccCcCccchhhhhcchHHHHHHHhc
Confidence            4677888777644  6777789999999999999999999999999666  89999999999999999999999999 99


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhccccccc--ccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcc
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHL--FNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDII  159 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~l--in~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v  159 (399)
                      +++.-.+|+.++|+|.+|++.|+.++++.|++..-.......  -..++..+-+|||+|+++|+.++++.|++.|-    
T Consensus       138 ~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~----  213 (854)
T KOG0507|consen  138 NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF----  213 (854)
T ss_pred             CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC----
Confidence            999999999999999999999999999999987211111001  23456678899999999999999999999998    


Q ss_pred             cccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          160 QIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       160 ~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      ++|...++| |+||.|+.    .+..+++++|++.|......
T Consensus       214 din~~t~~g-talheaal----cgk~evvr~ll~~gin~h~~  250 (854)
T KOG0507|consen  214 DINYTTEDG-TALHEAAL----CGKAEVVRFLLEIGINTHIK  250 (854)
T ss_pred             Ccccccccc-hhhhhHhh----cCcchhhhHHHhhccccccc
Confidence            898887766 99999998    77889999999999877653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=5.9e-18  Score=157.62  Aligned_cols=125  Identities=16%  Similarity=0.152  Sum_probs=108.7

Q ss_pred             ccCCCCCCcH-HHHHHHcCCHHHHHHh-hccCCccccc----cCCchHHHHHHHcCCHHHHHHHHHhhhccccccccccc
Q 015882           54 VVEDNGLTTP-LHRAAVNGDTGMIREI-ACSESLAKLT----SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNAT  127 (399)
Q Consensus        54 ~~~d~~g~tp-Lh~Aa~~g~~~iv~~L-~~~~~~~~~d----~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~  127 (399)
                      ..+|+.|.|+ ||.|++.|+.+++++| +.|++++.++    ..|.||||+|+..++.+++++|++.|++      +|.+
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD------VN~~   99 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD------VNRY   99 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------cCcc
Confidence            4567777765 6667777999999999 9999999874    5899999999999999999999999988      7776


Q ss_pred             -CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHH
Q 015882          128 -DKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILE  192 (399)
Q Consensus       128 -d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~  192 (399)
                       +..|.||||+|+..++.+++++|++.|+    +++.+|..|.||+|+|++    .+..++...+.
T Consensus       100 ~~~~g~TpLh~Aa~~~~~eivklLL~~GA----din~kd~~G~TpL~~A~~----~~~~~~~~~~~  157 (300)
T PHA02884        100 AEEAKITPLYISVLHGCLKCLEILLSYGA----DINIQTNDMVTPIELALM----ICNNFLAFMIC  157 (300)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHH----hCChhHHHHhc
Confidence             4579999999999999999999999999    999999999999999997    44555655543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=3e-18  Score=163.86  Aligned_cols=164  Identities=18%  Similarity=0.204  Sum_probs=151.2

Q ss_pred             HhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHH
Q 015882           28 SMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQID  106 (399)
Q Consensus        28 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~  106 (399)
                      -+.-|+..|..+-++.|+..+.++  +..+.+|.|+||-++...+.+||++| .+++.++..|.+|+||||.|+..|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            477888999999999999999999  89999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHhhhccc-----------------------------------------------------ccccccccCCCCCc
Q 015882          107 AFKILVEETKRHN-----------------------------------------------------REHLFNATDKEGNS  133 (399)
Q Consensus       107 ~v~~Ll~~~~~~~-----------------------------------------------------~~~lin~~d~~G~T  133 (399)
                      ++++++.+|++..                                                     .....+..+..|.|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            9999999998641                                                     23345666777999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          134 LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       134 ~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      .||.|+.+|..++.++|++.|.    +++.+|.+|.||||.|+.    .+..+++++|+++|++.+..
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~ag~----~~~~~D~dgWtPlHAAA~----Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQAGY----SVNIKDYDGWTPLHAAAH----WGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHHhcc----CcccccccCCCcccHHHH----hhhHhHHHHHHHhhcccchh
Confidence            9999999999999999999999    999999999999999998    88999999999999987654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=2.8e-17  Score=133.46  Aligned_cols=124  Identities=32%  Similarity=0.468  Sum_probs=114.6

Q ss_pred             cccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHH
Q 015882           20 TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALIL   98 (399)
Q Consensus        20 ~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~   98 (399)
                      .+|.+|.||||+|+..|+.++++.|++.+++.  +.++..|.+|+|.|+..++.++++.| ..+..++..+..|.||+|.
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            35678999999999999999999999999988  78899999999999999999999999 8887888888999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 015882           99 AVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLL  151 (399)
Q Consensus        99 A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll  151 (399)
                      |++.++.+++++|++.+.+      .+..|..|.||+|+|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGAD------VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCC------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999998655      7788999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=2.2e-17  Score=165.04  Aligned_cols=163  Identities=24%  Similarity=0.299  Sum_probs=142.8

Q ss_pred             cccccCCCChHhhHHHh---cCCHHHHHHHhhcCCCCCCcc---CCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccc-
Q 015882           18 DSTQNQNGCTSMHRAPV---EGDGEMIHCLGKLDPQTGSVV---EDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLT-   89 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~---~G~~~~v~~Ll~~~~~~~~~~---~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d-   89 (399)
                      .+++...|.|.||.|..   .++.++++.|++.-|.+.+..   ....|.||||+|+.+.+.++|++| +.+++++.+- 
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~  215 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC  215 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh
Confidence            56667889999999987   456799999999887665221   234799999999999999999999 8888887552 


Q ss_pred             ----------------------cCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHH
Q 015882           90 ----------------------SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIV  147 (399)
Q Consensus        90 ----------------------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv  147 (399)
                                            .-|+.||-.|+.-++.|++++|++++++      +|.+|.+|||.||+.+..-..++.
T Consensus       216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd------~~aqDS~GNTVLH~lVi~~~~~My  289 (782)
T KOG3676|consen  216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD------PNAQDSNGNTVLHMLVIHFVTEMY  289 (782)
T ss_pred             ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC------CCccccCCChHHHHHHHHHHHHHH
Confidence                                  1378999999999999999999999988      899999999999999999999999


Q ss_pred             HHHHhCCCCCccc--ccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHc
Q 015882          148 NLLLEGSSSDIIQ--IDSKNNQGQTALDICKANSQDSVSNEIGSILERA  194 (399)
Q Consensus       148 ~~Ll~~g~~~~v~--~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~  194 (399)
                      +++++.|+    +  ...+|++|.|||.+|++    .+..+|.+.+++.
T Consensus       290 ~~~L~~ga----~~l~~v~N~qgLTPLtLAak----lGk~emf~~ile~  330 (782)
T KOG3676|consen  290 DLALELGA----NALEHVRNNQGLTPLTLAAK----LGKKEMFQHILER  330 (782)
T ss_pred             HHHHhcCC----CccccccccCCCChHHHHHH----hhhHHHHHHHHHh
Confidence            99999999    6  88999999999999999    7888888888877

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=4.3e-17  Score=144.57  Aligned_cols=116  Identities=20%  Similarity=0.245  Sum_probs=108.8

Q ss_pred             cccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCch
Q 015882           16 EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAET   94 (399)
Q Consensus        16 ~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t   94 (399)
                      ...+.-|..|.+|||+||+.|+..+++.|+.+|+.+  +..|....||||+||.+||.++|+.| +..++++..|..|.|
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarv--n~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgnt  102 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV--NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNT  102 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhccccc--ccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCC
Confidence            346777899999999999999999999999999999  88899999999999999999999999 999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHH
Q 015882           95 ALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA  139 (399)
Q Consensus        95 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~  139 (399)
                      |||+||-.|...+.+-|+..|+.      ++..+++|.|||.-|-
T Consensus       103 plhyacfwgydqiaedli~~ga~------v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAA------VNICNKKGMTPLDKAK  141 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccce------eeecccCCCCchhhhc
Confidence            99999999999999999998877      8899999999998764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=4.2e-16  Score=126.50  Aligned_cols=123  Identities=32%  Similarity=0.488  Sum_probs=111.9

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCc
Q 015882           55 VEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS  133 (399)
Q Consensus        55 ~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T  133 (399)
                      .+|.+|.||||+|++.|+.+++++| ..+...+..+..|.||+|.|+..++.+++++|++.+..      ++..+..|.|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~~   75 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD------VNARDKDGNT   75 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCC
Confidence            3578899999999999999999999 88887788899999999999999999999999998765      6778899999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHH
Q 015882          134 LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSIL  191 (399)
Q Consensus       134 ~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L  191 (399)
                      |+|.|++.++.+++++|++.+.    +.+..|..|.||+++|..    .+..+++++|
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~l~~~~~----~~~~~~~~~L  125 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGA----DVNARDKDGRTPLHLAAK----NGHLEVVKLL  125 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCC----CCcccCCCCCCHHHHHHh----cCCHHHHHHh
Confidence            9999999999999999999987    889999999999999998    5667777765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=1.7e-16  Score=122.11  Aligned_cols=83  Identities=23%  Similarity=0.340  Sum_probs=39.4

Q ss_pred             hhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHH
Q 015882           29 MHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDA  107 (399)
Q Consensus        29 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  107 (399)
                      ||+|+..|+.++++.|++.+.++  +.    |.||||+|+..|+.+++++| +++.+++.+|.+|+||||.|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~--~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI--NL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT--TS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC--CC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            45555555555555555544444  11    44455555555544444444 4444444444444444444444444444


Q ss_pred             HHHHHHhhhc
Q 015882          108 FKILVEETKR  117 (399)
Q Consensus       108 v~~Ll~~~~~  117 (399)
                      +++|+++|++
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            4444444443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.68  E-value=1.7e-16  Score=130.92  Aligned_cols=118  Identities=19%  Similarity=0.166  Sum_probs=105.9

Q ss_pred             HHHHHHHcCCHHHHHHh--hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHH
Q 015882           63 PLHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAL  140 (399)
Q Consensus        63 pLh~Aa~~g~~~iv~~L--~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~  140 (399)
                      -+.+|+..+..+-|+.|  ..+..++.+|.+|.||||-|+.+|+.++++.|+..|++      .+.+...|+||||-||+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn------~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN------KEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC------cccccccCccchhhhhc
Confidence            36789999999988888  78888999999999999999999999999999999998      78999999999999999


Q ss_pred             cCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHH
Q 015882          141 NKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILER  193 (399)
Q Consensus       141 ~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~  193 (399)
                      ..+.+++..||++|+    |+|+..+...||||+++.+   .+.....++|+.
T Consensus       140 WnN~~va~~LLqhga----DVnA~t~g~ltpLhlaa~~---rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGA----DVNAQTKGLLTPLHLAAGN---RNSRDTLELLLH  185 (228)
T ss_pred             ccchhHHHHHHhccC----cccccccccchhhHHhhcc---cchHHHHHHHhh
Confidence            999999999999999    9999999999999999973   334455565553

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=2e-16  Score=121.70  Aligned_cols=83  Identities=35%  Similarity=0.492  Sum_probs=76.2

Q ss_pred             HHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcC
Q 015882           64 LHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK  142 (399)
Q Consensus        64 Lh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~  142 (399)
                      ||+|++.|+.++++.| +.+.+++.    |+||||+|+.+|+.+++++|++.|++      ++.+|.+|+||||+|+..+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGAD------INSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC------TT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc------ccccCCCCCCHHHHHHHcC
Confidence            7999999999999999 87766665    89999999999999999999999887      7899999999999999999


Q ss_pred             cHHHHHHHHhCCCC
Q 015882          143 LIVIVNLLLEGSSS  156 (399)
Q Consensus       143 ~~~iv~~Ll~~g~~  156 (399)
                      +.+++++|+++|++
T Consensus        71 ~~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   71 NLEIVKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHHHHHTTT-
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999885

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.63  E-value=1.6e-15  Score=138.64  Aligned_cols=141  Identities=21%  Similarity=0.264  Sum_probs=120.4

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHh-----cCCHHHHHHHhhcCCCCCCccC-CCCCCcHHHHHHHcCCHHHHH
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPV-----EGDGEMIHCLGKLDPQTGSVVE-DNGLTTPLHRAAVNGDTGMIR   77 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~-----~G~~~~v~~Ll~~~~~~~~~~~-d~~g~tpLh~Aa~~g~~~iv~   77 (399)
                      ++++.|.... .-.++.+|..|+||.++|+.     ..+.++|+.|.+.| ++  |.+ ...|+|+|++|+.+|+.++|+
T Consensus       282 ~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nV--NaKAsQ~gQTALMLAVSHGr~d~vk  357 (452)
T KOG0514|consen  282 DVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DV--NAKASQHGQTALMLAVSHGRVDMVK  357 (452)
T ss_pred             HHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Cc--chhhhhhcchhhhhhhhcCcHHHHH
Confidence            3455554333 22378999999999999986     34788999999865 55  444 557999999999999999999


Q ss_pred             Hh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 015882           78 EI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEG  153 (399)
Q Consensus        78 ~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~  153 (399)
                      .| .|++++|..|.+|-|+|+.|+++||.|++++|+..     ...++...|.+|.|+|.+|-..|+.+|.-+|..+
T Consensus       358 ~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~-----p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  358 ALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV-----PSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc-----CcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            99 99999999999999999999999999999999986     3455888999999999999999999999888765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.60  E-value=8.8e-15  Score=146.67  Aligned_cols=151  Identities=21%  Similarity=0.213  Sum_probs=127.8

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccC--------C---------------CCCCcHHHHHHHcCCHHHHHH
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--------D---------------NGLTTPLHRAAVNGDTGMIRE   78 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~--------d---------------~~g~tpLh~Aa~~g~~~iv~~   78 (399)
                      ...|.||||+|+.+.+.++|++|++.|+|+  +++        +               ..|..||-.||--++.|++++
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV--~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADV--HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCch--hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            467999999999999999999999999988  322        1               147899999999999999999


Q ss_pred             h-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhC-CC-
Q 015882           79 I-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEG-SS-  155 (399)
Q Consensus        79 L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~-g~-  155 (399)
                      | +++++++.+|.+|+|+||..+.+-..++.+++++.|++    .+...++++|-|||-+|++.|..++++.+++. +. 
T Consensus       259 Ll~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~----~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~  334 (782)
T KOG3676|consen  259 LLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN----ALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFT  334 (782)
T ss_pred             HHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC----ccccccccCCCChHHHHHHhhhHHHHHHHHHhhccc
Confidence            9 99999999999999999999999999999999999887    44667889999999999999999999999998 22 


Q ss_pred             --------CCccccccccc--CCCCHHHHHHhc
Q 015882          156 --------SDIIQIDSKNN--QGQTALDICKAN  178 (399)
Q Consensus       156 --------~~~v~~~~~n~--~g~Tpl~~a~~~  178 (399)
                              +.-.+.+..|.  +.++.|.+.+..
T Consensus       335 ~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  335 DWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             ceeecccccccccchhcccccchhhhhhhhhcC
Confidence                    11123344442  567888887754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=7.3e-14  Score=125.33  Aligned_cols=131  Identities=33%  Similarity=0.406  Sum_probs=118.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCC-----HHHHHHHHHhhhccccccccccc
Q 015882           54 VVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQ-----IDAFKILVEETKRHNREHLFNAT  127 (399)
Q Consensus        54 ~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~~~~~~~lin~~  127 (399)
                      ...+..+.+++|.++..+..++++++ ..+.+++.+|..|.||||+|+.+++     .+++++|++.|++   ....+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~---~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD---LDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC---CCCcccc
Confidence            56677789999999999999999888 8888889999999999999999999     9999999999871   0126778


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHcc
Q 015882          128 DKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       128 d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~g  195 (399)
                      |.+|+||||+|+..|+.+++++|++.++    +++.+|..|.|+++.++.    .+..++.+.+.+.+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~----~~~~~~~~g~t~l~~a~~----~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGA----DPNSRNSYGVTALDPAAK----NGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCC----CCcccccCCCcchhhhcc----cchHHHHHHHHhcC
Confidence            9999999999999999999999999999    899999999999999998    78888999998876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=2.8e-14  Score=128.05  Aligned_cols=132  Identities=25%  Similarity=0.321  Sum_probs=120.9

Q ss_pred             ccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCC-----HHHHHHh-hccC---Cc
Q 015882           15 QEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGD-----TGMIREI-ACSE---SL   85 (399)
Q Consensus        15 ~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~-----~~iv~~L-~~~~---~~   85 (399)
                      +......+..+.+++|.|+..+..+.++.++..+.++  +.+|.+|.||||+|+..|+     .+++++| ..++   ..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~  140 (235)
T COG0666          63 DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV--NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN  140 (235)
T ss_pred             ccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc--ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCc
Confidence            3344556677999999999999999999999999999  8999999999999999999     9999999 7777   67


Q ss_pred             cccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 015882           86 AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS  154 (399)
Q Consensus        86 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g  154 (399)
                      +..|.+|+||||+|+..|+.++++++++.+++      ++.++..|.|++|.|+..++.++++.+++.+
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIVELLLEAGAD------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHHHHHHhcCCC------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            77799999999999999999999999999887      6778999999999999999999999999865

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.54  E-value=3.6e-15  Score=151.94  Aligned_cols=189  Identities=20%  Similarity=0.216  Sum_probs=130.6

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      +|+++++....  ..++.+|+.|.+||.+|+-.||..+|+.|+++.+++. -..|+.+.|+|-+|+..|+.++|+.| ..
T Consensus       770 ~e~vellv~rg--aniehrdkkgf~plImaatagh~tvV~~llk~ha~ve-aQsdrtkdt~lSlacsggr~~vvelLl~~  846 (2131)
T KOG4369|consen  770 REEVELLVVRG--ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE-AQSDRTKDTMLSLACSGGRTRVVELLLNA  846 (2131)
T ss_pred             HHHHHHHHHhc--ccccccccccchhhhhhcccCchHHHHHHHhhhhhhh-hhcccccCceEEEecCCCcchHHHHHHHh
Confidence            46666665554  2356777777777777777777777777777777664 45666677777777777777777776 66


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhccc-----------------------------cccccccc-CCCC
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN-----------------------------REHLFNAT-DKEG  131 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----------------------------~~~lin~~-d~~G  131 (399)
                      ++.-+.++....|||-+|...|..++++.|+..|.+.+                             ...++|.+ ..+-
T Consensus       847 gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNr  926 (2131)
T KOG4369|consen  847 GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNR  926 (2131)
T ss_pred             hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcccccccc
Confidence            66666666555666666666666666666665554321                             11224443 3456


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCCC
Q 015882          132 NSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTAP  202 (399)
Q Consensus       132 ~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~  202 (399)
                      ||+|-+|+..|..+++.+||...+    ++..+-+.|.|||.-++.    .+..++-++|+.+|++.+..|
T Consensus       927 nTaltla~fqgr~evv~lLLa~~a----nvehRaktgltplme~As----gGyvdvg~~li~~gad~nasP  989 (2131)
T KOG4369|consen  927 NTALTLALFQGRPEVVFLLLAAQA----NVEHRAKTGLTPLMEMAS----GGYVDVGNLLIAAGADTNASP  989 (2131)
T ss_pred             ccceeeccccCcchHHHHHHHHhh----hhhhhcccCCcccchhhc----CCccccchhhhhcccccccCC
Confidence            777777888888888888888877    788888888888888887    777888888999998887664

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.46  E-value=3.5e-13  Score=99.86  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=83.9

Q ss_pred             HHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHc
Q 015882           63 PLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALN  141 (399)
Q Consensus        63 pLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~  141 (399)
                      -+.++.++|..+-|+.. ..+.+++.. ..|++|||+|+.+|+.+++++|+..|++      ++.+|+.|-|||--|+..
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~------i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGAN------IQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccc------cCCccccCCcHHHHHHHH
Confidence            45678888888888877 666665543 3788999999999999999999988888      888899999999999999


Q ss_pred             CcHHHHHHHHhCCCCCcccccccccCCCCHHHHHH
Q 015882          142 KLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK  176 (399)
Q Consensus       142 ~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~  176 (399)
                      ||.++|++||+.|+    +...+.-+|.+.++.+.
T Consensus        78 GH~~cVklLL~~GA----drt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   78 GHRDCVKLLLQNGA----DRTIHAPDGTALIEATE  108 (117)
T ss_pred             hhHHHHHHHHHcCc----ccceeCCCchhHHhhcc
Confidence            99999999999998    77777788888776443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=4e-13  Score=139.83  Aligned_cols=104  Identities=21%  Similarity=0.211  Sum_probs=93.7

Q ss_pred             HHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHc
Q 015882           63 PLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALN  141 (399)
Q Consensus        63 pLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~  141 (399)
                      +|+.|+..|+.+.++.| ..+++++.+|.+|+||||+|+.+|+.+++++|++.|++      +|.+|.+|+||||+|+..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad------vn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD------PTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHC
Confidence            58889999999999999 99999999999999999999999999999999999887      789999999999999999


Q ss_pred             CcHHHHHHHHhC-------CCCCcccccccccCCCCHHHHHH
Q 015882          142 KLIVIVNLLLEG-------SSSDIIQIDSKNNQGQTALDICK  176 (399)
Q Consensus       142 ~~~~iv~~Ll~~-------g~~~~v~~~~~n~~g~Tpl~~a~  176 (399)
                      ++.+++++|+++       ++    +.+..+..|++|+....
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga----~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGA----NAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCC----CCCccccCCCCccchhh
Confidence            999999999998       66    77777887877766554

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.42  E-value=1.2e-13  Score=141.13  Aligned_cols=183  Identities=19%  Similarity=0.192  Sum_probs=113.5

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      +.+++|......  ...++....|||.+|..-|.+++++.|+.+|.++....-.+.|..||.+|+.+||.+.++.| +.+
T Consensus       838 ~vvelLl~~gan--kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~g  915 (2131)
T KOG4369|consen  838 RVVELLLNAGAN--KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPG  915 (2131)
T ss_pred             hHHHHHHHhhcc--ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhccc
Confidence            455555544322  23445555666666666666666666666666653223334566666666666666555555 444


Q ss_pred             CCc----------------------------------cccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccC
Q 015882           83 ESL----------------------------------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD  128 (399)
Q Consensus        83 ~~~----------------------------------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d  128 (399)
                      .++                                  +++.+.|-|||+-++..|..|+=++|+..|++.+.....    
T Consensus       916 sdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp----  991 (2131)
T KOG4369|consen  916 SDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVP----  991 (2131)
T ss_pred             chhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCC----
Confidence            444                                  444455555555555555555555555555553322222    


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          129 KEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       129 ~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      ..-.|+|-+++..||.+.+++|+...+    -++.+|++|.|+|.+|+.    .+....+..|++++++.+.
T Consensus       992 ~T~dtalti~a~kGh~kfv~~lln~~a----tv~v~NkkG~T~Lwla~~----Gg~lss~~il~~~~ad~d~ 1055 (2131)
T KOG4369|consen  992 NTWDTALTIPANKGHTKFVPKLLNGDA----TVRVPNKKGCTVLWLASA----GGALSSCPILVSSVADADQ 1055 (2131)
T ss_pred             CcCCccceeecCCCchhhhHHhhCCcc----ceecccCCCCcccchhcc----CCccccchHHhhcccChhh
Confidence            222356666667777777777776666    688899999999999997    7788899999999998874

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=5.1e-13  Score=92.38  Aligned_cols=53  Identities=30%  Similarity=0.436  Sum_probs=40.9

Q ss_pred             CChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh
Q 015882           25 GCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI   79 (399)
Q Consensus        25 G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   79 (399)
                      |+||||+|+..|+.+++++|++++.++  +.+|.+|.||||+|++.|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di--n~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI--NAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT--T-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            688899999999999999999888888  77788888999999988888888875

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=1.6e-12  Score=135.29  Aligned_cols=111  Identities=18%  Similarity=0.171  Sum_probs=95.9

Q ss_pred             hHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCH
Q 015882           27 TSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQI  105 (399)
Q Consensus        27 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~  105 (399)
                      ++||.|+..|+.+.++.|++.|+++  +.+|.+|.||||+|+..|+.+++++| ..+++++.+|.+|+||||+|+.+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi--n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP--NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            3588999999999999999999999  88999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHHhhhc-ccccccccccCCCCCcHHHHHH
Q 015882          106 DAFKILVEETKR-HNREHLFNATDKEGNSLLHLAA  139 (399)
Q Consensus       106 ~~v~~Ll~~~~~-~~~~~lin~~d~~G~T~LHlA~  139 (399)
                      +++++|++++.. .......+..+..|++|+-.+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999998211 1122236667777888776554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.38  E-value=1.5e-12  Score=96.54  Aligned_cols=100  Identities=19%  Similarity=0.189  Sum_probs=85.1

Q ss_pred             hHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCH
Q 015882           27 TSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQI  105 (399)
Q Consensus        27 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~  105 (399)
                      --..+++++|..+-|+..+..|-++  +. -..|++|||+||-.|+.+++++| ..+++++.+|+.|-|||..|+..||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV--n~-~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV--NE-IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH--HH-HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            4567889999999999999888666  32 23899999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccccccccCCCCCcHH
Q 015882          106 DAFKILVEETKRHNREHLFNATDKEGNSLL  135 (399)
Q Consensus       106 ~~v~~Ll~~~~~~~~~~lin~~d~~G~T~L  135 (399)
                      ++|++|++.|++      -..+..+|.+.+
T Consensus        81 ~cVklLL~~GAd------rt~~~PdG~~~~  104 (117)
T KOG4214|consen   81 DCVKLLLQNGAD------RTIHAPDGTALI  104 (117)
T ss_pred             HHHHHHHHcCcc------cceeCCCchhHH
Confidence            999999999987      345556675544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.36  E-value=5.5e-13  Score=92.85  Aligned_cols=49  Identities=39%  Similarity=0.466  Sum_probs=30.6

Q ss_pred             cccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHH
Q 015882          123 LFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC  175 (399)
Q Consensus       123 lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a  175 (399)
                      .+|.+|..|+||||+|++.|+.+++++|++.++    +++.+|++|+||+|+|
T Consensus         8 ~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~----d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    8 DVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA----DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC----CCCCCcCCCCCHHHhC
Confidence            378889999999999999999999999998888    8999999999999886

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=1.7e-12  Score=89.78  Aligned_cols=54  Identities=39%  Similarity=0.530  Sum_probs=39.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 015882           92 AETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLL  151 (399)
Q Consensus        92 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll  151 (399)
                      |+||||.|++.|+.+++++|++.+.+      +|.+|.+|+||||+|++.|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67888888888888888888887666      7778888888888888888888888775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.32  E-value=1.7e-12  Score=90.39  Aligned_cols=51  Identities=27%  Similarity=0.342  Sum_probs=26.2

Q ss_pred             ccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHH
Q 015882           15 QEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRA   67 (399)
Q Consensus        15 ~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A   67 (399)
                      +..++.+|..|+||||+||..|+.+++++|++.+.++  +.+|.+|+||||+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~--~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP--NAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T--T---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC--CCCcCCCCCHHHhC
Confidence            4456677777777777777777777777777777777  67777777777776

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=8.5e-12  Score=119.19  Aligned_cols=126  Identities=22%  Similarity=0.257  Sum_probs=105.3

Q ss_pred             CCCCcHH---HHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCc
Q 015882           58 NGLTTPL---HRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS  133 (399)
Q Consensus        58 ~~g~tpL---h~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T  133 (399)
                      +-..+||   .-|+..|..|+|+-+ ..-.+....|.+|-|+||-|+..||.+||++|++.|++      +|..|.+|+|
T Consensus       545 RvrfnPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan------VNa~DSdGWT  618 (752)
T KOG0515|consen  545 RVRFNPLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN------VNAADSDGWT  618 (752)
T ss_pred             ceecchHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc------ccCccCCCCc
Confidence            3344564   458899999999999 66677888899999999999999999999999999988      9999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHc
Q 015882          134 LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERA  194 (399)
Q Consensus       134 ~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~  194 (399)
                      |||.|+..++..+++.|++.|+   .-.-..-.++.||.+-+..  .+.+..++.++|-..
T Consensus       619 PLHCAASCNnv~~ckqLVe~Ga---avfAsTlSDmeTa~eKCee--~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  619 PLHCAASCNNVPMCKQLVESGA---AVFASTLSDMETAAEKCEE--MEEGYDQCSQYLYGV  674 (752)
T ss_pred             hhhhhhhcCchHHHHHHHhccc---eEEeeecccccchhhhcch--hhhhHHHHHHHHHHH
Confidence            9999999999999999999999   2333445788999887754  235677888888643

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.20  E-value=9e-11  Score=104.66  Aligned_cols=120  Identities=18%  Similarity=0.162  Sum_probs=97.4

Q ss_pred             CChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCcccc-ccCCchHHHHHHHc
Q 015882           25 GCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKL-TSDAETALILAVKS  102 (399)
Q Consensus        25 G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~-d~~g~t~Lh~A~~~  102 (399)
                      -..||..+...|+.+....|++.-.++  +.+|..|++||..|+..|+.++++.| +.++++|.. +..+.||||.|+..
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v--n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV--NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh--hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            356888888888888888888875556  78888888998888888988888888 888888754 34588899999888


Q ss_pred             CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 015882          103 SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE  152 (399)
Q Consensus       103 g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~  152 (399)
                      |+.++.++|++.|++      ....+.-|+|+-.+|+.-|+.++|..+=.
T Consensus        90 Gn~dvcrllldaGa~------~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGAR------MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CCchHHHHHHhccCc------cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            888888888888887      55667778888888888888887765543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.15  E-value=1.3e-10  Score=103.60  Aligned_cols=97  Identities=19%  Similarity=0.255  Sum_probs=90.1

Q ss_pred             ccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchH
Q 015882           17 KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETA   95 (399)
Q Consensus        17 l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~   95 (399)
                      .++.+|.+|.|||..|+..|+.++|+.|++.|+|++ ..++..++||||.||.+|+.++.+.| +.|+.....|.-|+|+
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN-~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTA  115 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN-DKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTA  115 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC-cccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhH
Confidence            378899999999999999999999999999999997 67888999999999999999999999 9999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHh
Q 015882           96 LILAVKSSQIDAFKILVEE  114 (399)
Q Consensus        96 Lh~A~~~g~~~~v~~Ll~~  114 (399)
                      -..|+--||.++|..+=.+
T Consensus       116 aqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  116 AQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHHHhcchHHHHHHhcc
Confidence            9999999999988766443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=1.4e-10  Score=111.10  Aligned_cols=119  Identities=17%  Similarity=0.134  Sum_probs=100.2

Q ss_pred             HhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHH
Q 015882           28 SMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQID  106 (399)
Q Consensus        28 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~  106 (399)
                      .|.-|+..|-+|+|+..+..-.|+  ...|++|.|+||-|+-.||.+||++| ..++++|..|.+||||||.|+..++..
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp--SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP--SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC--CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            456788999999999999988888  78999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccccccCCCCCcHHHHHH--HcCcHHHHHHHHhC
Q 015882          107 AFKILVEETKRHNREHLFNATDKEGNSLLHLAA--LNKLIVIVNLLLEG  153 (399)
Q Consensus       107 ~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~--~~~~~~iv~~Ll~~  153 (399)
                      +++.|++.|+..     +-..=.++.|+..-+-  +.|..++.++|...
T Consensus       631 ~ckqLVe~Gaav-----fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  631 MCKQLVESGAAV-----FASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHhccceE-----EeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999998762     2333455667664432  34677788887644

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.76  E-value=5.3e-09  Score=105.16  Aligned_cols=90  Identities=20%  Similarity=0.232  Sum_probs=80.8

Q ss_pred             hcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHh-hccCCcccc
Q 015882           11 KDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDN-GLTTPLHRAAVNGDTGMIREI-ACSESLAKL   88 (399)
Q Consensus        11 ~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~-~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~   88 (399)
                      ......+++.+|.-|+|+||+|+..|..++++.|+++|.++  ..+|. .|+||||-|...|++|++..| .++..+...
T Consensus        38 ~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv--~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~  115 (1267)
T KOG0783|consen   38 EKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV--FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIK  115 (1267)
T ss_pred             HHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee--eeccccccchHhhHhhhhchHHHHHHHHhcCCceEEe
Confidence            33445678999999999999999999999999999999999  67776 599999999999999999999 999999999


Q ss_pred             ccCCchHHHHHHHc
Q 015882           89 TSDAETALILAVKS  102 (399)
Q Consensus        89 d~~g~t~Lh~A~~~  102 (399)
                      |++|..||..-++-
T Consensus       116 Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  116 DKEGLSPLQFLSRV  129 (1267)
T ss_pred             cccCCCHHHHHhhc
Confidence            99999999887763

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.76  E-value=3.2e-08  Score=94.39  Aligned_cols=96  Identities=21%  Similarity=0.165  Sum_probs=85.6

Q ss_pred             cccccCCCChH------hhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCcccccc
Q 015882           18 DSTQNQNGCTS------MHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTS   90 (399)
Q Consensus        18 ~~~~d~~G~Tp------Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~   90 (399)
                      ...+|.+|.|.      ||-.++.|+.|..-.||..|++++ +.-.+.|.||||+||+.|+..-+++| -+|+++...|.
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N-~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~  198 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQAN-FFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS  198 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccC-CCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCC
Confidence            34567777774      999999999999999999999996 55566799999999999999999999 99999999999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHh
Q 015882           91 DAETALILAVKSSQIDAFKILVEE  114 (399)
Q Consensus        91 ~g~t~Lh~A~~~g~~~~v~~Ll~~  114 (399)
                      +|.||+.+|-..||-++.+-|++.
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHHH
Confidence            999999999999998877777664

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.76  E-value=1e-08  Score=99.16  Aligned_cols=119  Identities=20%  Similarity=0.159  Sum_probs=102.3

Q ss_pred             hhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc--cCCccccccCCchHHHHHHHcCCH
Q 015882           29 MHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC--SESLAKLTSDAETALILAVKSSQI  105 (399)
Q Consensus        29 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~--~~~~~~~d~~g~t~Lh~A~~~g~~  105 (399)
                      +..|+..++.--++..-..|.++  ..++.+..+.||+|++-|+.|+|+++ ++  ++.++..|..|+|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~l--l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL--LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce--EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            66788888877777777888888  78899999999999999999999999 43  345677888899999999999999


Q ss_pred             HHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882          106 DAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus       106 ~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      .+.++|++.|+.      +...|..|.||-.-|-+.|+.+...+|-.+..
T Consensus       948 ~vc~~lvdagas------l~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  948 AVCQLLVDAGAS------LRKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             HHHHHHHhcchh------heecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            999999999887      67889999999999999999999988876543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.74  E-value=7.5e-09  Score=104.12  Aligned_cols=83  Identities=22%  Similarity=0.226  Sum_probs=43.8

Q ss_pred             CccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCC-CCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           84 SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK-EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        84 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~-~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      ..+..|..|+|+||+|+..+..+++++|+++|.+      ++.+|. .|.||||-|..+|+.+++.+||++|+    ...
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid------v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~----SL~  113 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGID------VFVQDEESGYTALHRAIYYGNIDCASLLLSKGR----SLR  113 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCce------eeeccccccchHhhHhhhhchHHHHHHHHhcCC----ceE
Confidence            3444555555555555555555555555555444      444442 35555555555555555555555555    455


Q ss_pred             ccccCCCCHHHHHH
Q 015882          163 SKNNQGQTALDICK  176 (399)
Q Consensus       163 ~~n~~g~Tpl~~a~  176 (399)
                      ++|++|..||+..+
T Consensus       114 i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLS  127 (1267)
T ss_pred             EecccCCCHHHHHh
Confidence            55555555555544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.74  E-value=2.9e-08  Score=96.07  Aligned_cols=119  Identities=20%  Similarity=0.311  Sum_probs=102.0

Q ss_pred             HHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcC
Q 015882           64 LHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK  142 (399)
Q Consensus        64 Lh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~  142 (399)
                      +.-|+..+..--+++. ..+.++-.++.+..+.||+|++.|+-|+++|++++++.    .++++.|..|.|+||-|+-.+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~----elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS----ELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH----HHHHHHhhhhhHHHHHHHHhc
Confidence            4455666554444555 78888999999999999999999999999999999754    678999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHc
Q 015882          143 LIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERA  194 (399)
Q Consensus       143 ~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~  194 (399)
                      +..+.++|++.|+    .+...|.+|.||-.-|.+    .++.++..+|...
T Consensus       946 ~r~vc~~lvdaga----sl~ktd~kg~tp~eraqq----a~d~dlaayle~r  989 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGA----SLRKTDSKGKTPQERAQQ----AGDPDLAAYLESR  989 (1004)
T ss_pred             chHHHHHHHhcch----hheecccCCCChHHHHHh----cCCchHHHHHhhh
Confidence            9999999999999    788899999999999988    6677788777543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=1.2e-08  Score=96.74  Aligned_cols=90  Identities=20%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             CCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh--hccCCccccccCCchHHHHHH
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAV  100 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L--~~~~~~~~~d~~g~t~Lh~A~  100 (399)
                      .++..++.+|+..|++..++.+.-.|.|+  +.+|.+.+|+||+||..|+++++++|  .++.+.+.+|..|+|||.-|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~--~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDL--ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccc--cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            34445666666666666666666666666  56666666666666666666666666  555666666666666666666


Q ss_pred             HcCCHHHHHHHHHh
Q 015882          101 KSSQIDAFKILVEE  114 (399)
Q Consensus       101 ~~g~~~~v~~Ll~~  114 (399)
                      ..+|.+++++|-+.
T Consensus       582 ~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEA  595 (622)
T ss_pred             hcCcHHHHHHHHHH
Confidence            66666666665544

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.66  E-value=2.5e-08  Score=94.77  Aligned_cols=99  Identities=23%  Similarity=0.333  Sum_probs=80.6

Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCC
Q 015882           90 SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQ  169 (399)
Q Consensus        90 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~  169 (399)
                      .++...+.+|++.|....++-+.-.|.+      ++.+|.+.+|+||.|+..|+.+++++|++...   ++++.+|+.|+
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D------~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k---v~~~~kDRw~r  574 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMD------LETKDYDDRTALHVAAAEGHVEVVKFLLNACK---VDPDPKDRWGR  574 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccc------ccccccccchhheeecccCceeHHHHHHHHHc---CCCChhhccCC
Confidence            3456778888999998888877766655      78889999999999999999999999998876   68889999999


Q ss_pred             CHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          170 TALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       170 Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      ||||-|..    .++.+++++|.++...-...
T Consensus       575 tPlDdA~~----F~h~~v~k~L~~~~~~y~~~  602 (622)
T KOG0506|consen  575 TPLDDAKH----FKHKEVVKLLEEAQYPYTLM  602 (622)
T ss_pred             CcchHhHh----cCcHHHHHHHHHHhcccccC
Confidence            99998887    77888888888876554443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.62  E-value=4.1e-08  Score=58.54  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             CCChHhhHHHhcCCHHHHHHHhhcCCCC
Q 015882           24 NGCTSMHRAPVEGDGEMIHCLGKLDPQT   51 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~   51 (399)
                      +|+||||+||..|+.|++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5899999999999999999999999887

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.61  E-value=1.4e-07  Score=90.21  Aligned_cols=88  Identities=20%  Similarity=0.257  Sum_probs=75.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhhhcccccccccccC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHH
Q 015882           94 TALILAVKSSQIDAFKILVEETKRHNREHLFNATD-KEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL  172 (399)
Q Consensus        94 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d-~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl  172 (399)
                      --||..++.|+.+..--|+..|++      .|..+ ..|+||||.|++.|+..-+++|+-+|+    |++..|.+|.||+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~------~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA----D~~a~d~~GmtP~  204 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQ------ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA----DPGAQDSSGMTPV  204 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccc------cCCCCcccCCchhHHHHhccchhhhhHHhhccC----CCCCCCCCCCcHH
Confidence            358999999999998888888888      45544 569999999999999999999999999    9999999999999


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHcc
Q 015882          173 DICKANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       173 ~~a~~~~~~~~~~~i~~~L~~~g  195 (399)
                      ++|..    .++.++.+.|.+..
T Consensus       205 ~~AR~----~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  205 DYARQ----GGHHELAERLVEIQ  223 (669)
T ss_pred             HHHHh----cCchHHHHHHHHHH
Confidence            99998    66666666666543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.60  E-value=6e-08  Score=59.39  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=28.5

Q ss_pred             CCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCC
Q 015882           24 NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDN   58 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~   58 (399)
                      +|+||||+|+..|+.+++++|+++|+++  +.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~--~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI--NARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT--TCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC--CCCCC
Confidence            5899999999999999999999999988  66653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.57  E-value=8e-08  Score=58.83  Aligned_cols=33  Identities=39%  Similarity=0.563  Sum_probs=30.2

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCccccccccc
Q 015882          130 EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNN  166 (399)
Q Consensus       130 ~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~  166 (399)
                      +|+||||+|+..++.+++++|+++|+    +++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga----~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA----DINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS----CTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC----CCCCCCC
Confidence            58999999999999999999999999    8888874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.55  E-value=9.2e-08  Score=57.04  Aligned_cols=29  Identities=48%  Similarity=0.634  Sum_probs=25.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882          130 EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus       130 ~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      +|+||||+|++.|+.+++++|++.|+    |+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga----dvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGA----DVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC----CCC
Confidence            58999999999999999999999988    766

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.52  E-value=1.5e-07  Score=97.75  Aligned_cols=138  Identities=14%  Similarity=-0.052  Sum_probs=111.8

Q ss_pred             CCccccccccCCCChHhhHHHhcCCHHHHHHHhhc-CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh--hccCCccccc
Q 015882           13 KVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKL-DPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--ACSESLAKLT   89 (399)
Q Consensus        13 ~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L--~~~~~~~~~d   89 (399)
                      ....+.......|.|-||+++..|+...++.+++. +...  ...|.+|...+|. |..++.++.-++  -.+..++.+|
T Consensus       562 ~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~--~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D  638 (975)
T KOG0520|consen  562 ISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD--LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRD  638 (975)
T ss_pred             HhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc--hhhcccCCChhhH-hhhcCCceeEEEEeeccccccccc
Confidence            33445666778899999999999999999999986 5555  5677777778888 445566666666  8888999999


Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 015882           90 SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEG  153 (399)
Q Consensus        90 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~  153 (399)
                      .+|+||||+|+..|+..++..|++.|+++...-..+..+..|.|+--+|-..|+..+..+|-+.
T Consensus       639 ~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  639 RNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999999999999888654445566677899999999999988887777655

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.51  E-value=3.7e-07  Score=88.85  Aligned_cols=95  Identities=23%  Similarity=0.296  Sum_probs=80.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHH
Q 015882           96 LILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC  175 (399)
Q Consensus        96 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a  175 (399)
                      |.-|+...+...+-+|+.+|..  .+..-..-+.+|+|+||+||+.|+..+.++|+.+|+    |+.++|..|+|+|.+|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~--~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~----dv~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSR--EEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV----DVMARDAHGRTALFYA  701 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCc--hhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc----cceecccCCchhhhhH
Confidence            4467777778888888888765  222233467788999999999999999999999999    9999999999999999


Q ss_pred             HhcCCCCcHHHHHHHHHHccCccCC
Q 015882          176 KANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       176 ~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      .+    .+..|+...|+++|.....
T Consensus       702 r~----a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  702 RQ----AGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             hh----cccHHHHHHHHHcCCCccc
Confidence            98    7889999999999976544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=5.2e-07  Score=87.32  Aligned_cols=88  Identities=17%  Similarity=0.106  Sum_probs=60.0

Q ss_pred             HhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHH
Q 015882           28 SMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQID  106 (399)
Q Consensus        28 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~  106 (399)
                      |||+++.....+-.+..+..........+|..|.||||+|+..|+.+.++.| ..++++..+|++|++|||-|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4777777666655544433323332266777777777777777777777777 777777777777777777777777777


Q ss_pred             HHHHHHHhh
Q 015882          107 AFKILVEET  115 (399)
Q Consensus       107 ~v~~Ll~~~  115 (399)
                      ++..++.+.
T Consensus       103 ~i~~vlr~~  111 (560)
T KOG0522|consen  103 IITEVLRHL  111 (560)
T ss_pred             HHHHHHHHh
Confidence            776666653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=4.4e-07  Score=87.83  Aligned_cols=88  Identities=27%  Similarity=0.319  Sum_probs=74.2

Q ss_pred             cHHHHHHHcCCHHH-HHHh--hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHH
Q 015882           62 TPLHRAAVNGDTGM-IREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLA  138 (399)
Q Consensus        62 tpLh~Aa~~g~~~i-v~~L--~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA  138 (399)
                      .|+|++......+- .+.|  +....++.+|..|+||||+|+.-|+.+.++.|+..+++      +..+|++|++|||.|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad------v~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD------VSIKNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC------ccccccccccHHHHH
Confidence            46999998776554 4444  55567888999999999999999999999999999887      788999999999999


Q ss_pred             HHcCcHHHHHHHHhCCC
Q 015882          139 ALNKLIVIVNLLLEGSS  155 (399)
Q Consensus       139 ~~~~~~~iv~~Ll~~g~  155 (399)
                      +..|+.+++..++.+-.
T Consensus        96 v~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHLK  112 (560)
T ss_pred             HHcCCHHHHHHHHHHhH
Confidence            99999888777665543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.27  E-value=2.5e-06  Score=83.22  Aligned_cols=90  Identities=17%  Similarity=0.136  Sum_probs=72.2

Q ss_pred             HhhHHHhcCCHHHHHHHhhcCCCCCC--ccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCC
Q 015882           28 SMHRAPVEGDGEMIHCLGKLDPQTGS--VVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQ  104 (399)
Q Consensus        28 pLh~Aa~~G~~~~v~~Ll~~~~~~~~--~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~  104 (399)
                      -|..|+...++..+-+||.+|.....  ...+.+|+|+||+||..|++.+.++| -++.++..+|.+|+|+|.+|-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            46778888888888888888754421  23456778899999999998888888 8888888888889999988888888


Q ss_pred             HHHHHHHHHhhhc
Q 015882          105 IDAFKILVEETKR  117 (399)
Q Consensus       105 ~~~v~~Ll~~~~~  117 (399)
                      -+++..|+++|..
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            8888888888754

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.18  E-value=1.3e-06  Score=91.45  Aligned_cols=78  Identities=26%  Similarity=0.323  Sum_probs=74.5

Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCC
Q 015882           90 SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQ  169 (399)
Q Consensus        90 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~  169 (399)
                      ..|.|+||.|+.++...+.++|++.|++      +|..|..|+||||.+...|+...+.+|+++++    +.++.|.+|+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~------vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a----~~~a~~~~~~  723 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD------VNALDSKGRTPLHHATASGHTSIACLLLKRGA----DPNAFDPDGK  723 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc------chhhhccCCCcchhhhhhcccchhhhhccccc----cccccCccCc
Confidence            3589999999999999999999999887      89999999999999999999999999999999    9999999999


Q ss_pred             CHHHHHHh
Q 015882          170 TALDICKA  177 (399)
Q Consensus       170 Tpl~~a~~  177 (399)
                      +|+++|..
T Consensus       724 ~~l~~a~~  731 (785)
T KOG0521|consen  724 LPLDIAME  731 (785)
T ss_pred             chhhHHhh
Confidence            99999986

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.07  E-value=6.4e-06  Score=85.99  Aligned_cols=130  Identities=17%  Similarity=0.115  Sum_probs=96.9

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHh-hc-cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCC
Q 015882           54 VVEDNGLTTPLHRAAVNGDTGMIREI-AC-SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG  131 (399)
Q Consensus        54 ~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~-~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G  131 (399)
                      ....-.|++.+|+++..++.-.++.+ +. +......|.+|...+|. |..++.+..-++...     ...-++.+|..|
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~-----~~~ai~i~D~~G  641 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISA-----DGVAIDIRDRNG  641 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEee-----cccccccccCCC
Confidence            44566789999999999999999998 43 55556678889999999 555666666655544     223488999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhCCCCCccc--ccccccCCCCHHHHHHhcCCCCcHHHHHHHHHH
Q 015882          132 NSLLHLAALNKLIVIVNLLLEGSSSDIIQ--IDSKNNQGQTALDICKANSQDSVSNEIGSILER  193 (399)
Q Consensus       132 ~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~--~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~  193 (399)
                      +||||+|+..|+.+++..|.+.|+.....  ++-.+-.|.|+-++|..    +++..+..+|.+
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s----~g~~gia~~lse  701 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA----NGHKGIAGYLSE  701 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc----ccccchHHHHhh
Confidence            99999999999999999999888843332  33344569999999986    444444444443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.06  E-value=1.5e-05  Score=81.69  Aligned_cols=127  Identities=17%  Similarity=0.065  Sum_probs=100.3

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCCC--CCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHH
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQ--TGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALIL   98 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~--~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~   98 (399)
                      ...+.--...|+..|+...|+..++....  ++.+..|.-|+++||.|..+.+.|+++.| +.+...       ..+|..
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~   94 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLL   94 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHH
Confidence            34455567899999999999999986544  54578899999999999999999999999 766433       578899


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccccc----cccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           99 AVKSSQIDAFKILVEETKRHNREHLF----NATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        99 A~~~g~~~~v~~Ll~~~~~~~~~~li----n~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      |+..|..+.++.++.+-.........    ...-..+-|||.+||..+++||+++|+++|+
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            99999999999999874331111110    1122457799999999999999999999998

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.95  E-value=8e-06  Score=85.58  Aligned_cols=90  Identities=26%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcH
Q 015882           56 EDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSL  134 (399)
Q Consensus        56 ~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~  134 (399)
                      .-..|.|+||.|+..|...++++| +++++++.+|..|+||+|.+...|+......+++.|++      .+..|.+|.+|
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~------~~a~~~~~~~~  725 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD------PNAFDPDGKLP  725 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc------ccccCccCcch
Confidence            345577888888888888888888 88888888888888888888888888888888888777      67788888888


Q ss_pred             HHHHHHcCcHHHHHHHH
Q 015882          135 LHLAALNKLIVIVNLLL  151 (399)
Q Consensus       135 LHlA~~~~~~~iv~~Ll  151 (399)
                      |++|....+.+++-++.
T Consensus       726 l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  726 LDIAMEAANADIVLLLR  742 (785)
T ss_pred             hhHHhhhccccHHHHHh
Confidence            88887766555554443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.82  E-value=5.3e-05  Score=77.77  Aligned_cols=125  Identities=17%  Similarity=0.110  Sum_probs=97.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHh---hcc--CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcH
Q 015882           60 LTTPLHRAAVNGDTGMIREI---ACS--ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSL  134 (399)
Q Consensus        60 g~tpLh~Aa~~g~~~iv~~L---~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~  134 (399)
                      +.--...|+..|+...|+..   ...  -++|.+|.-|+++||+|+.+.+.|+.++|+++...        .    | .+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~--------~----g-dA   91 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE--------E----G-DA   91 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc--------c----c-hH
Confidence            34456789999998888877   222  46788899999999999999999999999987322        1    3 48


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCC-----cccc-cccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          135 LHLAALNKLIVIVNLLLEGSSSD-----IIQI-DSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       135 LHlA~~~~~~~iv~~Ll~~g~~~-----~v~~-~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      |-+|+..|..++|+.++.+...-     ..+. ...-..+-||+.+|+.    .++.||+++|+..|+.....
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh----~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAH----LNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHH----hcchHHHHHHHHcCCCCCCC
Confidence            88999999999999999886610     0011 1233457899999998    88999999999999987654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.81  E-value=5.3e-05  Score=70.71  Aligned_cols=85  Identities=13%  Similarity=0.105  Sum_probs=69.8

Q ss_pred             ccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCc
Q 015882           15 QEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAE   93 (399)
Q Consensus        15 ~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~   93 (399)
                      |+....++.  .--|.+||+.|+.+.|++|++.|.++  |..|+....||.+|+..||.++|++| ++|+..+...-+|.
T Consensus        28 ~s~~~~~~~--f~elceacR~GD~d~v~~LVetgvnV--N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~  103 (516)
T KOG0511|consen   28 PSVPLKKVP--FGELCEACRAGDVDRVRYLVETGVNV--NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD  103 (516)
T ss_pred             cccccccCc--hHHHHHHhhcccHHHHHHHHHhCCCc--chhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence            444444444  34689999999999999999999999  89999999999999999999999999 99988777667788


Q ss_pred             hHHHHHHHcCC
Q 015882           94 TALILAVKSSQ  104 (399)
Q Consensus        94 t~Lh~A~~~g~  104 (399)
                      -. |+++.+.+
T Consensus       104 RC-~YgaLnd~  113 (516)
T KOG0511|consen  104 RC-HYGALNDR  113 (516)
T ss_pred             hh-hhhhhhHH
Confidence            77 44554433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.68  E-value=0.00017  Score=67.38  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             HHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhc
Q 015882           63 PLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKR  117 (399)
Q Consensus        63 pLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  117 (399)
                      -|..|++.|..+.|+.| ..|.++|.+|.-..+||.+|+..||.+++++|++.|+-
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            56777777777777777 77777777777777777777777777777777777764

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.65  E-value=8.9e-05  Score=63.00  Aligned_cols=62  Identities=18%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             cccccccCCCChHhhHHHhcCCHHHHHHHhhcC-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHh
Q 015882           16 EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLD-PQTGSVVEDNGLTTPLHRAAVNGDTGMIREI   79 (399)
Q Consensus        16 ~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   79 (399)
                      ..++.+|..|+|||..|+..|+.+.+.+|+.+| +.+  ...|..|.+.+.+|-+.|+.++++.|
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v--gv~d~ssldaaqlaek~g~~~fvh~l   65 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV--GVTDESSLDAAQLAEKGGAQAFVHSL   65 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccc--cccccccchHHHHHHhcChHHHHHHH
Confidence            346888999999999999999999999999999 666  88999999999999999999999999

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.58  E-value=0.00048  Score=58.67  Aligned_cols=61  Identities=20%  Similarity=0.079  Sum_probs=36.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHh-hcc-CCccccccCCchHHHHHHHcCCHHHHHHHHHh
Q 015882           54 VVEDNGLTTPLHRAAVNGDTGMIREI-ACS-ESLAKLTSDAETALILAVKSSQIDAFKILVEE  114 (399)
Q Consensus        54 ~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  114 (399)
                      +.+|..|+||+++||..|+-+.+.+| ..+ +.+...|..|.+++.+|-+.|+.++++.|.+.
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            55566666666666666666666666 444 55555555666666666666666666555554

>smart00248 ANK ankyrin repeats

Probab=96.72  E-value=0.0023  Score=36.21  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=23.4

Q ss_pred             CCChHhhHHHhcCCHHHHHHHhhcCCCC
Q 015882           24 NGCTSMHRAPVEGDGEMIHCLGKLDPQT   51 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~   51 (399)
                      +|.||||+|+..|+.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4788999999999999999998887765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.65  E-value=0.0022  Score=62.29  Aligned_cols=68  Identities=24%  Similarity=0.245  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHH
Q 015882          105 IDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK  176 (399)
Q Consensus       105 ~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~  176 (399)
                      .+.+++|.+.+...+...-....|..-.|+||+|+..|..+++.++|+.++    |+.++|..|.||.+++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~----Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC----DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC----CchhcccCCCCcccccc
Confidence            455666666655433333344556667899999999999999999999998    99999999999999876

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.41  E-value=0.0036  Score=60.82  Aligned_cols=40  Identities=20%  Similarity=0.178  Sum_probs=19.2

Q ss_pred             CcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHH
Q 015882           61 TTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAV  100 (399)
Q Consensus        61 ~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~  100 (399)
                      .|+||+|+.+|..++|.+| ..++++...|..|+||..++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3445555555554444444 444444444444555544443

>smart00248 ANK ankyrin repeats

Probab=96.37  E-value=0.0063  Score=34.27  Aligned_cols=26  Identities=42%  Similarity=0.613  Sum_probs=19.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882          130 EGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus       130 ~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      +|+||+|+|+..++.++++.|++.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36778888888888888888877765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.07  E-value=0.46  Score=42.08  Aligned_cols=94  Identities=17%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCC----CCCcHHHHHHH--cCcHHHHHHHHhCCCCCcccccc--
Q 015882           92 AETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK----EGNSLLHLAAL--NKLIVIVNLLLEGSSSDIIQIDS--  163 (399)
Q Consensus        92 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~----~G~T~LHlA~~--~~~~~iv~~Ll~~g~~~~v~~~~--  163 (399)
                      -.+++-+|..++..+++-+|+..-.       ...+|-    .+---+-++..  ..+..+.++.+++|.   +++|.  
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~-------ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Gl---v~vN~~F  248 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFN-------FTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGL---VDVNKKF  248 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhcc-------eecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccc---cccchhh
Confidence            3577888888999999999987621       222221    12222334333  357889999999998   67775  


Q ss_pred             -cccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          164 -KNNQGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       164 -~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                       +-+.|.|.||-|.+    +++.+++..|+++||..+
T Consensus       249 ~~~NSGdtMLDNA~K----y~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  249 QKVNSGDTMLDNAMK----YKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             hccCCcchHHHhHHh----cCcHHHHHHHHHcCcccc
Confidence             45789999999999    889999999999999655

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.19  E-value=0.59  Score=41.39  Aligned_cols=115  Identities=11%  Similarity=0.042  Sum_probs=75.5

Q ss_pred             HhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh--h----ccCCccccccCCchHHHH--H
Q 015882           28 SMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--A----CSESLAKLTSDAETALIL--A   99 (399)
Q Consensus        28 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L--~----~~~~~~~~d~~g~t~Lh~--A   99 (399)
                      .|--|+..-+.+.+..++....+.         .++|-+|..++..+++-+|  .    .+.-.....  +.--+-+  .
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA---------~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS  224 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDA---------HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLS  224 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHH---------HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHh
Confidence            456777777777777776654443         4788999988999999888  1    111111111  1111222  2


Q ss_pred             HHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882          100 VKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus       100 ~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      ....+..++++.+.+|--.  ..-.-.+-+.|.|.|--|.++++.+++..|+++|+
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~--vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVD--VNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             hcCCcHHHHHHHHhccccc--cchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            3344577888888876320  00011345789999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=84.81  E-value=6.1  Score=34.07  Aligned_cols=46  Identities=7%  Similarity=-0.122  Sum_probs=25.5

Q ss_pred             hhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh
Q 015882           29 MHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI   79 (399)
Q Consensus        29 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   79 (399)
                      |..|+..+..++.+..-+...+-     -...++.+-.|++..+.|+|+.+
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI   95 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWI   95 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHH
Confidence            45566666666666554421110     12344556667777777777766

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	399
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 24  NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--AC 81
           NG T +H A   G  E++  L  L+       +D    TPLH AA NG   +++ +  A 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 82  SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
           ++  AK   +  T L LA ++  ++  K+L+E           NA DK G + LHLAA
Sbjct: 59  ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAA 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
2etb_A	256	Transient receptor potential cation channel subfam	5e-11
2etb_A	256	Transient receptor potential cation channel subfam	5e-10
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
2pnn_A	273	Transient receptor potential cation channel subfa	8e-10
2pnn_A	273	Transient receptor potential cation channel subfa	9e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-08
2pnn_A	273	Transient receptor potential cation channel subfa	7e-04
2rfa_A	232	Transient receptor potential cation channel subfa	9e-10
2rfa_A	232	Transient receptor potential cation channel subfa	7e-09
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
2rfa_A	232	Transient receptor potential cation channel subfa	3e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
             ++G + +H A +  +  +   + +      + +   +N   TPLH A +     +   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 79  -IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL 137
            +              T L LA +   + +  +L +     +   +  AT+  G++ LHL
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 138 AALNKLIVIVNLLLE-GSSSDIIQIDSKNNQ-GQTAL 172
           A+++  + IV LL+  G       ++++    G+TAL
Sbjct: 124 ASIHGYLGIVELLVSLG-----ADVNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 27/175 (15%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCL--GKLDPQTGSVVE---DNGLTTPLHRAAVNGDTGM 75
           ++  G T +H A  +G    +  L      P   S+++    NG T  LH A+++G    
Sbjct: 74  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT-CLHLASIHGYL-- 130

Query: 76  IREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNAT 127
              I   E L        A+   +  TAL LAV     D   +L++       +   N  
Sbjct: 131 --GIV--ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK----CGAD--VNRV 180

Query: 128 DKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKANSQD 181
             +G S   L        I   L +    +  +  +S++ +           ++D
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 87  KLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVI 146
           +LT D ++ L LA+   +      ++ + K        N  +    + LHLA +     I
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEI 60

Query: 147 VNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
              LL  G        + ++ +G T L + C+     SV
Sbjct: 61  AEALLGAGCD-----PELRDFRGNTPLHLACEQGCLASV 94

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE-DNGLTTPLHRAAVNGDTGMIREI 79
             + G   + RA    +      L     + G ++   +   T   +    G TG+I   
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYI---EEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 80  ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
             +E         +  L  A K   +   +  ++   R       N  DK G++ L+ A 
Sbjct: 65  YVAEQ----AESIDNPLHEAAKRGNLSWLRECLD--NRVG----VNGLDKAGSTALYWAC 114

Query: 140 LNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
                 IV +L    + +   ++ +N  G TAL
Sbjct: 115 HGGHKDIVEMLFTQPNIE---LNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 24/176 (13%)

Query: 2   SNELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNG 59
           S     L   + V E+     ++    +H A   G+   +     LD      V   D  
Sbjct: 54  SKGRTGLIPSNYVAEQA----ESIDNPLHEAAKRGNLSWLREC--LD--NRVGVNGLDKA 105

Query: 60  LTTPLHRAAVNGDTGMIREIACSESLAKL---TSDAETALILAVKSSQIDAFKILVEETK 116
            +T L+ A   G   ++ E+  ++   +L       +TAL  A      D  ++L+    
Sbjct: 106 GSTALYWACHGGHKDIV-EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA--- 161

Query: 117 RHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
                   +  + E      +A       ++                 N +     
Sbjct: 162 -KGAR--TDLRNIEKKLAFDMATNAACASLLKKKQGTD----AVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 24/130 (18%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            ++ G T+++ A   G  +++  L     Q    +   +    T LH AA  G      +
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEML--FT-QPNIELNQQNKLGDTALHAAAWKGYA----D 154

Query: 79  IACSESL----AKLT---SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG 131
           I   + L    A+      + + A  +A  ++     K         +       ++ E 
Sbjct: 155 IV--QLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG----TDAV--RTLSNAED 206

Query: 132 NSLLHLAALN 141
                 + L 
Sbjct: 207 YLDDEDSDLE 216

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 66.3 bits (163), Expect = 1e-12
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 62  TPLHRAAVNGDTGMIREIACSESLAK------LTSDAETALILAVKSSQIDAFKILVEET 115
           TPLH A V G+   +  +  +             +  +T L LAV ++     ++LV   
Sbjct: 11  TPLHIAVVQGNLPAVHRL-VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-- 67

Query: 116 KRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
                     A D+ G +  HLA  ++    +  LL+ ++   + ++++N  G TAL
Sbjct: 68  --AGAS--PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 31/176 (17%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCL---GKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
            +++G T+ H A        +  L                +GLT  LH A          
Sbjct: 75  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQ---- 129

Query: 78  EIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK 129
           E    + L        A       + LI AV+++ +   ++L++    H      NA   
Sbjct: 130 ETV--QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ----HGAN--VNAQMY 181

Query: 130 EGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
            G+S LH A+   L+ +V  L+  G          KN    T L +       D +
Sbjct: 182 SGSSALHSASGRGLLPLVRTLVRSG-----ADSSLKNCHNDTPLMVARSRRVIDIL 232

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 27/176 (15%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            +++G T +H A V+G+   +H L  L  Q G  ++  +N   TPLH A +         
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----S 60

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLF--NATD 128
           +     L        A      +TA  LA +       + L++              A +
Sbjct: 61  VV--RLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLD----SAAPGTLDLEARN 113

Query: 129 KEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
            +G + LH+A   +    V LLLE   +DI  +D K+  G++ L    + NS   V
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKS--GRSPLIHAVENNSLSMV 166

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 123 LFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
           +    D++G++ LH+A +   +  V+ L+        ++D  NN  QT L
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 50

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 22/140 (15%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
           +N +G T++H A      E +  L +      +V   +G + PL  A  N        + 
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS-PLIHAVENNSL----SMV 166

Query: 81  CSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGN 132
             + L        A+      +AL  A     +   + LV        +   +  +   +
Sbjct: 167 --QLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVR----SGAD--SSLKNCHND 217

Query: 133 SLLHLAALNKLIVIVNLLLE 152
           + L +A   ++I I+     
Sbjct: 218 TPLMVARSRRVIDILRGKAT 237

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.9 bits (162), Expect = 1e-12
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 28/171 (16%)

Query: 14  VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNG 71
           V   D   + +G T  H A   G+ E++  L   D      +    N   T LH A    
Sbjct: 62  VNLDDYPDD-SGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAVGKK 118

Query: 72  DTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHL 123
                 E++  + L         K     +  L  A     +   ++L        +  +
Sbjct: 119 WF----EVS--QFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCG----LGKSAV 167

Query: 124 FNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI 174
            N  DK+G + L  A          LL+E   ++    D  +N+G  A D+
Sbjct: 168 -NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 63.6 bits (156), Expect = 6e-12
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 29/164 (17%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCL---GKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
           ++Q+G   +H +      E+   L    + +       +D+G T P H A   G+     
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKME-NVNLDDYPDDSGWT-PFHIACSVGNL---- 85

Query: 78  EIACSESLAKLTSDA---------ETALILAVKSSQIDAFKILVEETKRHNREHLFNATD 128
           E+   +SL                 T L LAV     +  + L+E    +         D
Sbjct: 86  EVV--KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE----NGAS--VRIKD 137

Query: 129 KEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
           K     LH AA    + ++ LL     S    ++ ++ QG T L
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 25/122 (20%)

Query: 62  TPLHRAAVNGDTGMIREIACSESLAKLTS----------DAETALILAVKSSQIDAFKIL 111
            PLH+A +  +   ++E+        L S          D    L  +V     +    L
Sbjct: 4   YPLHQACMENEFFKVQEL--------LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL 55

Query: 112 VEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQT 170
           + + +  N +   +  D  G +  H+A     + +V  L +     D   ++   NQG T
Sbjct: 56  LSKMENVNLD---DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD---LNKITNQGVT 109

Query: 171 AL 172
            L
Sbjct: 110 CL 111

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.1 bits (165), Expect = 2e-12
 Identities = 46/169 (27%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE---DNGLTTPLHRAAVNGDTGMIR 77
           ++  G T +H A  EG  EM+  L  L     +       +GLT PLH  A  G   +  
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALL--LS--KQANGNLGNKSGLT-PLHLVAQEGHVPVAD 295

Query: 78  E-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLH 136
             I     +   T    T L +A     I   K L++    H  +   NA  K G S LH
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ----HQAD--VNAKTKLGYSPLH 349

Query: 137 LAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
            AA      IV LLL+ G        +  ++ G T L I  +       
Sbjct: 350 QAAQQGHTDIVTLLLKNG-----ASPNEVSSDGTTPLAIAKRLGYISVT 393

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 14/159 (8%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            N++G T +H    EG   +   L  +    G +V+       TPLH A+  G+  +++ 
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVL--IK--HGVMVDATTRMGYTPLHVASHYGNIKLVKF 329

Query: 79  -IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL 137
            +     +   T    + L  A +    D   +L++    +      N    +G + L +
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK----NGAS--PNEVSSDGTTPLAI 383

Query: 138 AALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK 176
           A     I + ++L    + +   +   +    +  +   
Sbjct: 384 AKRLGYISVTDVLKV-VTDETSFVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 32/174 (18%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
               G T +H A  EG  E +  L  L+    +          TPLH AA  G       
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLAL--LE--KEASQACMTKKGFTPLHVAAKYGKV----R 160

Query: 79  IACSESL----AKL---TSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG 131
           +A  E L    A       +  T L +AV  + +D  K+L+            ++    G
Sbjct: 161 VA--ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP----RGGS--PHSPAWNG 212

Query: 132 NSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
            + LH+AA    + +   LL+ G        ++++ QG T L +  +    + V
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYG-----GSANAESVQGVTPLHLAAQEGHAEMV 261

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.1 bits (152), Expect = 8e-11
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
              ++G T +H A   G   ++  L  L  Q G+     +  + TPLH AA  G T + +
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNL--L--QRGASPNVSNVKVETPLHMAARAGHTEVAK 64

Query: 78  E-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLH 136
             +     +     D +T L  A +    +  K+L+E    +N     N     G++ LH
Sbjct: 65  YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE----NNAN--PNLATTAGHTPLH 118

Query: 137 LAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
           +AA    +  V  LLE  +S           +G T L
Sbjct: 119 IAAREGHVETVLALLEKEAS-----QACMTKKGFTPL 150

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 57  DNGLTTPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEET 115
                TPLH A+  G   +++  +    S        ET L +A ++   +  K L++  
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-- 68

Query: 116 KRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
             +  +   NA  K+  + LH AA      +V LLLE          +     G T L I
Sbjct: 69  --NKAK--VNAKAKDDQTPLHCAARIGHTNMVKLLLENN-----ANPNLATTAGHTPLHI 119

Query: 175 -CKANSQDSV 183
             +    ++V
Sbjct: 120 AAREGHVETV 129

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.7 bits (138), Expect = 5e-09
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 19/156 (12%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
             + G T +H A   G   +   L  L+    +          TPLH A  + +  +++ 
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELL--LE--RDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197

Query: 79  -IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL 137
            +    S      +  T L +A K +Q++  + L++    +      NA   +G + LHL
Sbjct: 198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ----YGGS--ANAESVQGVTPLHL 251

Query: 138 AALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
           AA      +V LLL   +       +  N  G T L
Sbjct: 252 AAQEGHAEMVALLLSKQA-----NGNLGNKSGLTPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDS 182
               + G + LH+A+    + IV  LL+ G+S      +  N + +T L +  +A   + 
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGAS-----PNVSNVKVETPLHMAARAGHTEV 62

Query: 183 V 183
            
Sbjct: 63  A 63

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 41/172 (23%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE-DNGLTTPLHRAAVNGDTGMIREIA 80
           N      +  A   GD E +  L     Q+ +  + +   +TPLH AA          + 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKL--CTVQSVNCRDIEGRQSTPLHFAAGYNRV----SVV 58

Query: 81  CSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGN 132
             E L        AK        L  A      +  ++LV+    H      N  D    
Sbjct: 59  --EYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK----HGAV--VNVADLWKF 109

Query: 133 SLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKANSQDSV 183
           + LH AA      I  LLL+ G          KN  G T LD+ K    D  
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHG-----ADPTKKNRDGNTPLDLVKDGDTDIQ 156

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 22/163 (13%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI 79
                    +H     G   +   + +       +++     T LH  A N       E 
Sbjct: 89  EPEPESPIKLHTE-AAGSYAITEPITRESVN---IIDPRHNRTVLHWIASNSSAEKS-ED 143

Query: 80  ACSESLAKLTS----------DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK 129
                  +  +          D  T L+LAV + +      L++       +      +K
Sbjct: 144 LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK----AGAD--PTIYNK 197

Query: 130 EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
              S LH AA N+   ++  +L  S+     I+  +  G TAL
Sbjct: 198 SERSALHQAAANRDFGMMVYMLN-STKLKGDIEELDRNGMTAL 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 28/170 (16%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLD-PQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
            N++  +++H+A    D  M+  +  L+  +    +E  D    T L   A N     + 
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYM--LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252

Query: 78  ------------EIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFN 125
                       +   +           TAL  A + S +   K LV         +  +
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG----EKGSNK-D 307

Query: 126 ATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
             D++G + + LAA    I +V  L++ G       +++ +    TA  +
Sbjct: 308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQG-----ASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 19/177 (10%)

Query: 3   NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGL 60
           + L+E +    ++ + +           +    G+  +       +     +    +   
Sbjct: 39  HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLG----DFNHTNLQIPTEPEPES 94

Query: 61  TTPLHRAAVNGDTGMIREIACSESLAKL--TSDAETALILAVKSSQIDAFKILVEETKRH 118
              LH  A  G   +  E    ES   +       T L     +S  +  + L+    + 
Sbjct: 95  PIKLHTEA-AGSYAIT-EPITRES-VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 151

Query: 119 NREH--LFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
                   NA D + N+ L LA L +   +V  L++ G           N   ++AL
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-----ADPTIYNKSERSAL 203

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 18/163 (11%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            + +  T +  A +     ++  L  +    G+     +    + LH+AA N D GM+  
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYL--MK--AGADPTIYNKSERSALHQAAANRDFGMMVY 217

Query: 79  -IACSESLA---KLTSDAETALILAVKSS---QIDAFKILVEE--TKRHNREHLFNATDK 129
            +  ++      +L  +  TAL++   +    Q+ + K+LVE+     ++     ++   
Sbjct: 218 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 277

Query: 130 EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
           +G + LH AA    + IV  L+          D ++  G+T +
Sbjct: 278 KGRTALHYAAQVSNMPIVKYLV---GEKGSNKDKQDEDGKTPI 317

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 19/144 (13%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKL---------DPQTGSVVEDNGLTTPLHRAAVNG 71
            ++NG T++         + +     L         D       E     T LH AA   
Sbjct: 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290

Query: 72  DTGMIREIACSESLAKL---TSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD 128
           +  ++ +    E  +       D +T ++LA +  +I+    L++            A D
Sbjct: 291 NMPIV-KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ----QGAS--VEAVD 343

Query: 129 KEGNSLLHLAALNKLIVIVNLLLE 152
              ++   LA  N    IV++   
Sbjct: 344 ATDHTARQLAQANNHHNIVDIFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 14/117 (11%), Positives = 26/117 (22%), Gaps = 20/117 (17%)

Query: 56  EDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEET 115
                   L  A+ +G     R         +L   +         +             
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRN--------ELQHYSLYPNPQGYGNGNDFLGDFN---- 80

Query: 116 KRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
             H    +    + E    LH  A     +   +  E      + I    +  +T L
Sbjct: 81  --HTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRES-----VNIIDPRH-NRTVL 129

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.4 bits (153), Expect = 8e-12
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 32/168 (19%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREI 79
           +      +     EG+   +     LD  T + +   D+   +PLH A   G +     +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLW--LD-NTENDLNQGDDHGFSPLHWACREGRS----AV 54

Query: 80  ACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG 131
              E L               +T L LA      D  + L++    +  +   NA ++ G
Sbjct: 55  V--EMLIMRGARINVM-NRGDDTPLHLAASHGHRDIVQKLLQ----YKAD--INAVNEHG 105

Query: 132 NSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKAN 178
           N  LH A       +   L+  G       +   N  G+  +D  KA 
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANG-----ALVSICNKYGEMPVDKAKAP 148

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 31/144 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            + +G + +H A  EG   ++  L  +    G+ +   + G  TPLH AA +G     R+
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEML--IM--RGARINVMNRGDDTPLHLAASHGH----RD 86

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREH--LFNATD 128
           I   + L        A         L  A    Q    + LV         +  L +  +
Sbjct: 87  IV--QKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVA--------NGALVSICN 135

Query: 129 KEGNSLLHLAALNKLIVIVNLLLE 152
           K G   +  A      ++     +
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEK 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 45/222 (20%)

Query: 4   ELIE--LAKKDKVQEKDSTQNQNGCTSMHRA---PVEGDGEMIHCLGKLDPQTGSVVE-- 56
            L+   L  K ++ +++  +   G T + +A      G  + I  L  +  +TG++ E  
Sbjct: 23  GLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82

Query: 57  -------DNGLTTPLHRAAVNGDTGMIR---------------EIACSESLAKLTSDAET 94
                       T LH A        +                     +         E 
Sbjct: 83  NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142

Query: 95  ALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK---------LIV 145
            L LA  ++Q      L E    H +  L    D  GN++LH               +  
Sbjct: 143 PLSLAACTNQPHIVHYLTE--NGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 146 IVNLLLE---GSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
           + +LLL        D       NN G + L +  K       
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 33/180 (18%)

Query: 5   LIELAKKDK-----VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCL-------------GK 46
           L+++A+K       +          G T++H A        +  L               
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 47  LDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE-IACSESLAKL---TSDAETALILAV-- 100
             P+        G   PL  AA      ++          A L    S   T L   V  
Sbjct: 128 FQPKDEGGYFYFG-ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 101 -------KSSQIDAFKILVEETKRHN-REHLFNATDKEGNSLLHLAALNKLIVIVNLLLE 152
                         + +L+ +  +     +L    + +G S L +AA    I I   ++ 
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 28/150 (18%)

Query: 62  TPLHRAAVNGDTGMIREIA---------CSESLAKLTSDAETALILAVKSSQ---IDAFK 109
             L      G    +  +           ++   +  S  +T L  A+ +      D   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 110 ILVEETKRHNREHLF-----NATDKEGNSLLHLAALNKLIVIVNLLLE----------GS 154
           IL++  ++      F           G + LH+A   +    V LL+E          G 
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 155 SSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
                        G+  L +    N    V
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIV 156

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 43/182 (23%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGK-------------------LDPQTGSVVEDNGLT 61
            N +G +++  AP     E +    K                   L  +  +  +     
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
           T LH A  +       ++A  E L         K   D  T L +A + +  D  ++L +
Sbjct: 213 TALHCAVASLHPKRK-QVA--ELLLRKGANVNEK-NKDFMTPLHVAAERAHNDVMEVLHK 268

Query: 114 ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
               H  +   NA D  G + LH AAL   +    LLL  G           + QG TA 
Sbjct: 269 ----HGAK--MNALDSLGQTALHRAALAGHLQTCRLLLSYG-----SDPSIISLQGFTAA 317

Query: 173 DI 174
            +
Sbjct: 318 QM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 5e-10
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 32/198 (16%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSV-VEDNGLTTPLHRAAVNGDTGMIREI 79
             +     +  A   G+ E +  L  L P   +    D   +TPLH AA          I
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMAL--LTPLNVNCHASDGRKSTPLHLAAGYNRV----RI 73

Query: 80  ACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG 131
              + L        AK        L  A      +  ++L++    H      NA D   
Sbjct: 74  V--QLLLQHGADVHAK-DKGGLVPLHNACSYGHYEVTELLLK----HGAC--VNAMDLWQ 124

Query: 132 NSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDSVSNEI-G 188
            + LH AA    + + +LLL  G+          N  G++A+D+      ++ ++ E  G
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGAD-----PTLVNCHGKSAVDMAPTPELRERLTYEFKG 179

Query: 189 SILERAAARKQTAPVSEL 206
             L +AA     A V + 
Sbjct: 180 HSLLQAAREADLAKVKKT 197

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 30/173 (17%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
             +    T +H A       ++  L  L  Q G+ V   D G   PLH A   G   +  
Sbjct: 53  ASDGRKSTPLHLAAGYNRVRIVQLL--L--QHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

Query: 78  E-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLH 136
             +     +  +     T L  A   ++++   +L+     H  +      +  G S + 
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS----HGAD--PTLVNCHGKSAVD 162

Query: 137 LAALNKLIVIVNLLLEGSS---------SDIIQ--------IDSKNNQGQTAL 172
           +A   +L   +    +G S            ++           +    +TAL
Sbjct: 163 MAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 53/170 (31%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE------------DNGLTTPLHRAA 68
           Q Q+  T++H A         H   K       V E            +    TPLH AA
Sbjct: 207 QPQSHETALHCAVASL-----HPKRK------QVAELLLRKGANVNEKNKDFMTPLHVAA 255

Query: 69  VNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNR 120
                    ++   E L        A   S  +TAL  A  +  +   ++L+     +  
Sbjct: 256 ERAHN----DVM--EVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLS----YGS 304

Query: 121 EHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQT 170
           +   +    +G +   +        +  +L E        + + +   + 
Sbjct: 305 D--PSIISLQGFTAAQMGNEA----VQQILSES-----TPMRTSDVDYRL 343

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 29/171 (16%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCL--------GKLDPQTGSVVEDNGLTTPLHRAAVNGD 72
            +  G T+   A V G  + +  L         +   +        G  T L  AA  G 
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 73  TGMIREIACSESLAKL---TSDAETALILAVKSSQIDAFKILVEETKRHNREHLF----- 124
             ++ +I   E  A +    +    ALI A+ SS     + +           L      
Sbjct: 161 VEVL-KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH--------LLLDHGAD 211

Query: 125 -NATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI 174
            N   + G + L LA   K + +V  LLE    +   I+  ++ G+TAL +
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 31/192 (16%)

Query: 14  VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNG 71
           V  ++    + G T +H A      +++  L  L    G+          TP   AA+ G
Sbjct: 31  VNFQE---EEGGWTPLHNAVQMSREDIVELL--LR--HGADPVLRKKNGATPFLLAAIAG 83

Query: 72  DTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEE----TKRHN 119
                 ++   +                  TA + A    ++ A K L +       R  
Sbjct: 84  SV----KLL--KLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

Query: 120 REHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANS 179
            +       K G + L  AA    + ++ +LL         +++ +N G+ AL     +S
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILL---DEMGADVNACDNMGRNALIHALLSS 193

Query: 180 QDSVSNEIGSIL 191
            DS    I  +L
Sbjct: 194 DDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 4e-10
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 21/153 (13%)

Query: 10  KKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRA 67
            + K +E      + G T++  A  +G  E++  L  LD + G+ V   DN     L  A
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL--LD-EMGADVNACDNMGRNALIHA 189

Query: 68  AVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHN 119
            ++ D   +  I     L         +     +T LILAV+   +   + L+E   + +
Sbjct: 190 LLSSDDSDVEAIT--HLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLE---QEH 243

Query: 120 REHLFNATDKEGNSLLHLAALNKLIVIVNLLLE 152
            E   N TD +G + L LA   KL  I  LL +
Sbjct: 244 IE--INDTDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.2 bits (134), Expect = 8e-09
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 26/120 (21%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
             L +A  N D     ++   + L         +      T L  AV+ S+ D  ++L+ 
Sbjct: 7   HLLIKAVQNEDV----DLV--QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 114 ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
               H  +       K G +   LAA+   + ++ L L  G       ++  +  G TA 
Sbjct: 61  ----HGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKG-----ADVNECDFYGFTAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 34/168 (20%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE---DNGLTTPLHRAAVNGDTGMIRE 78
                  + +A    D +++  L  L+   G+ V    + G  TPLH A          +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQL--LE--GGANVNFQEEEGGWTPLHNAVQMSRE----D 53

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKE 130
           I   E L         +   +  T  +LA  +  +   K+ +        +   N  D  
Sbjct: 54  IV--ELLLRHGADPVLR-KKNGATPFLLAAIAGSVKLLKLFLS----KGAD--VNECDFY 104

Query: 131 GNSLLHLAALNKLIVIVNLLLE------GSSSDIIQIDSKNNQGQTAL 172
           G +    AA+   +  +  L +               +     G TAL
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.5 bits (153), Expect = 4e-11
 Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 46/184 (25%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
             N +G T++H+A ++ + +M+  L  ++   G+ +   DN    PLH AA  G      
Sbjct: 68  YANVDGLTALHQACIDDNVDMVKFL--VE--NGANINQPDNEGWIPLHAAASCGYL---- 119

Query: 78  EIACSESL-------AKLTSDAETALILAVKSSQIDAFKILVE------ETKRHN----- 119
           +IA  E L         + S+ +T L +A + +  +  +  V       E  R       
Sbjct: 120 DIA--EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177

Query: 120 ----REHLF------NATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQG 168
               R+ L           K G + LH+AA      ++ LL++         ++ K+  G
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-----YDVNIKDYDG 232

Query: 169 QTAL 172
            T L
Sbjct: 233 WTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.2 bits (134), Expect = 9e-09
 Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 33/157 (21%)

Query: 55  VEDNGLTTPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQID 106
           V+ +     L  A  +GDT    E      L             D  TAL  A     +D
Sbjct: 36  VKFDDGAVFLA-ACSSGDT----EEV--LRLLERGADINYA-NVDGLTALHQACIDDNVD 87

Query: 107 AFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKN 165
             K LVE    +      N  D EG   LH AA    + I   L+  G+      + + N
Sbjct: 88  MVKFLVE----NGAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-----VGAVN 136

Query: 166 NQGQTALDIC-KANSQDSVSNEIGSILERAAARKQTA 201
           ++G T LDI  +   ++ + NE+     R     + A
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEV----NRQGVDIEAA 169

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 39/185 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
            N  G T +  A  E   E++     ++ Q         +              M+R+  
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNE--VNRQ------GVDIEAARKEEE----RIMLRDAR 182

Query: 81  CSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGN 132
             + L                TAL +A      +  K+L++       +   N  D +G 
Sbjct: 183 --QWLNSGHINDVRH-AKSGGTALHVAAAKGYTEVLKLLIQ----ARYD--VNIKDYDGW 233

Query: 133 SLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSIL 191
           + LH AA         +L+E         +++ N  GQTA D+   +    +   +  + 
Sbjct: 234 TPLHAAAHWGKEEACRILVENL-----CDMEAVNKVGQTAFDVADED----ILGYLEELQ 284

Query: 192 ERAAA 196
           ++   
Sbjct: 285 KKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 30/121 (24%)

Query: 62  TPLHRAAVNGDTGMIREIACSESLAKLTS---------DAETALILAVKSSQIDAFKILV 112
                    G             L              D     + A  S   +    L+
Sbjct: 10  RNEQLKRWIG---------SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 113 EETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTA 171
           E       +   N  + +G + LH A ++  + +V  L+E G++     I+  +N+G   
Sbjct: 61  E----RGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGAN-----INQPDNEGWIP 109

Query: 172 L 172
           L
Sbjct: 110 L 110

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 37/207 (17%), Positives = 61/207 (29%), Gaps = 49/207 (23%)

Query: 8   LAKKDKVQEKDSTQNQNGCTSMHRAPV---EGDGEMIHCLGKLDPQTGSVV--------- 55
                 + +   T+   G T + +A +   +G    I  L ++D  +G+           
Sbjct: 26  RWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85

Query: 56  EDNGLTTPLHRAAVNGDTGMIR--------------EIACSESLAKLTSDAETALILAVK 101
           E     + LH A        ++                   +         E  L LA  
Sbjct: 86  EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

Query: 102 SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK----------------LIV 145
           + Q D    L+E    H    L  ATD  GN++LH   +                  L+ 
Sbjct: 146 TKQWDVVTYLLE--NPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202

Query: 146 IVNLLLEGSSSDIIQIDSKNNQGQTAL 172
           +   L           +  N+QG T L
Sbjct: 203 MGARLCPTVQL----EEISNHQGLTPL 225

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 29/187 (15%)

Query: 27  TSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLT------TPLHRAAVNGDTGMIR--- 77
             +      G  E +  L +        + D+  T      T L +A +N   G+     
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 78  ---EIACSESLAKLTSDA---------ETALILAVKSSQIDAFKILVE-------ETKRH 118
              +I       K   +A          +AL +A++   +   K+LVE            
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 119 NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN 178
             +         G   L LAA  K   +V  LLE +      +++ ++ G T L      
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE-NPHQPASLEATDSLGNTVLHALVMI 182

Query: 179 SQDSVSN 185
           + +S  N
Sbjct: 183 ADNSPEN 189

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 27/161 (16%)

Query: 9   AKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSV-VEDNGLTTPLHRA 67
           A     Q+   T    G   +  A      +++  L +   Q  S+   D+   T LH  
Sbjct: 120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179

Query: 68  AVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNAT 127
            +  D                 S   +AL++ +    +     L    +      L   +
Sbjct: 180 VMIADN----------------SPENSALVIHMYDGLLQMGARLCPTVQ------LEEIS 217

Query: 128 DKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQG 168
           + +G + L LAA    I I   +L+          + ++  
Sbjct: 218 NHQGLTPLKLAAKEGKIEIFRHILQRE----FSGAAAHHHH 254

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.3 bits (150), Expect = 6e-11
 Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 32/164 (19%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
            ++QN  + +H A   G  ++ H L  +    G+ ++       TPL  AA N       
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHML--VQ--AGANIDTCSEDQRTPLMEAAENNHL---- 57

Query: 78  EIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK 129
           E    + L         K  ++  T L LA K    +  + L+     + +  + N  D 
Sbjct: 58  EAV--KYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLS----NGQMDV-NCQDD 109

Query: 130 EGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
            G + +  A   K + +V LLL  GS      I+ ++N+    L
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGSD-----INIRDNEENICL 148

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 34/170 (20%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCL---GKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
           ++  G T +H A  +G  E++  L   G++D       +D+G  TP+  A          
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN----CQDDGGWTPMIWATEYKHV---- 124

Query: 78  EIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK 129
           ++   + L         +  ++    L  A  S  +D  +IL+        +   +A + 
Sbjct: 125 DLV--KLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLA----AKCD--LHAVNI 175

Query: 130 EGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKAN 178
            G+S LH+AA       V L L          +  KN +G+T L     N
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRD-----SDVTLKNKEGETPLQCASLN 220

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 27/142 (19%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
           Q+  G T M  A      +++  L  L    GS +   DN     LH AA +G      +
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLL--LS--KGSDINIRDNEENICLHWAAFSGCV----D 158

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKE 130
           IA  E L        A      ++ L +A + ++ D   + +      + +      +KE
Sbjct: 159 IA--EILLAAKCDLHAV-NIHGDSPLHIAARENRYDCVVLFLS----RDSD--VTLKNKE 209

Query: 131 GNSLLHLAALNKLIVIVNLLLE 152
           G + L  A+LN  +     + +
Sbjct: 210 GETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
               +   S LH AA    + I ++L++ G       ID+ +   +T L
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAG-----ANIDTCSEDQRTPL 48

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.9 bits (149), Expect = 8e-11
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 24/161 (14%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCL---GKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
           Q+  G T +H A       +   L      D         +  TTPL  AA     GM+ 
Sbjct: 86  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLD----ARMHDGTTPLILAARLAVEGMLE 141

Query: 78  E-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATDKEGNSL 134
           + I     +  +    ++AL  A   + +DA  +L++    +  N+    +  +    + 
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----NGANK----DMQNNREETP 193

Query: 135 LHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
           L LAA         +LL+          D  ++  +   DI
Sbjct: 194 LFLAAREGSYETAKVLLDHF-----ANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 24/131 (18%)

Query: 57  DNGLTTPLHRAAVNGDTGMIREIAC---SESLAKL------------TSDAETALILAVK 101
                TPL  A+ +G             + ++                   ETAL LA +
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 102 SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQI 161
            S+ DA K L+E     + +   N  D  G + LH A       +  +L+   ++D   +
Sbjct: 67  YSRSDAAKRLLE----ASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD---L 117

Query: 162 DSKNNQGQTAL 172
           D++ + G T L
Sbjct: 118 DARMHDGTTPL 128

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 34/165 (20%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
             ++ G T++H A      +    L  L+    +     DN   TPLH A          
Sbjct: 52  QTDRTGETALHLAARYSRSDAAKRL--LE--ASADANIQDNMGRTPLHAAVSADAQ---- 103

Query: 78  EIACSESL---------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD 128
            +   + L         A+   D  T LILA + +     + L+      + +   NA D
Sbjct: 104 GVF--QILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLIN----SHAD--VNAVD 154

Query: 129 KEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
             G S LH AA    +    +LL+ G        D +NN+ +T L
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKNG-----ANKDMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 31/144 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
           +  +G T +  A       M+  L      + + V   D+   + LH AA   +     +
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDL----INSHADVNAVDDLGKSALHWAAAVNNV----D 171

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATD 128
            A    L         +  +  ET L LA +    +  K+L++    H  NR    + TD
Sbjct: 172 AA--VVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLD----HFANR----DITD 220

Query: 129 KEGNSLLHLAALNKLIVIVNLLLE 152
                   +A       IV LL  
Sbjct: 221 HMDRLPRDIAQERMHHDIVRLLDL 244

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 29/162 (17%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
           +       +  A      ++   L   D  T   V+  D    TPL+ A  N D     E
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEIL--QD--TTYQVDEVDTEGNTPLNIAVHNNDI----E 53

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKE 130
           IA  ++L         +  S +++  + A    + +    +++    H    L N  ++ 
Sbjct: 54  IA--KALIDRGADINLQ-NSISDSPYLYAGAQGRTEILAYMLK----HATPDL-NKHNRY 105

Query: 131 GNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
           G + L  AA    I  V LLLE    D   ID +N+ G TAL
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.5 bits (140), Expect = 6e-10
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 28/128 (21%)

Query: 55  VEDNGLTTPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQID 106
           ++   +   L  A          ++   E L            ++  T L +AV ++ I+
Sbjct: 1   MKTYEVGALLEAANQRDTK----KVK--EILQDTTYQVDEV-DTEGNTPLNIAVHNNDIE 53

Query: 107 AFKILVEETKRH--NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSK 164
             K L++       +     N  +   +S    A       I+  +L+ ++ D   ++  
Sbjct: 54  IAKALID----RGAD----INLQNSISDSPYLYAGAQGRTEILAYMLKHATPD---LNKH 102

Query: 165 NNQGQTAL 172
           N  G  AL
Sbjct: 103 NRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 38/172 (22%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
             +  G T ++ A    D E+   L  +D   G+ +   ++   +P   A   G T    
Sbjct: 34  EVDTEGNTPLNIAVHNNDIEIAKAL--ID--RGADINLQNSISDSPYLYAGAQGRT---- 85

Query: 78  EIACSESL---------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD 128
           EI     +                  ALI A +   ID  K+L+E      RE + +  +
Sbjct: 86  EIL--AYMLKHATPDLNKH-NRYGGNALIPAAEKGHIDNVKLLLE----DGREDI-DFQN 137

Query: 129 KEGNSLLHLAALNKLIV-----IVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
             G + L  A   +        IV LL+E G          K+N G+TA+D 
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENG-----ADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 22/143 (15%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCL---GKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
           QN    +    A  +G  E++  +      D        +      L  AA  G    + 
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHATPDLN----KHNRYGGNALIPAAEKGHIDNV- 122

Query: 78  EIACSESLAKL---TSDAETALILAVKSSQ-----IDAFKILVEETKRHNREHLFNATDK 129
           ++   +    +        TALI AV   +      D  K+L+E    +  +   +  D 
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME----NGAD--QSIKDN 176

Query: 130 EGNSLLHLAALNKLIVIVNLLLE 152
            G + +  A       I  +L +
Sbjct: 177 SGRTAMDYANQKGYTEISKILAQ 199

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 23/170 (13%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNG------- 71
            +  G + + +A    +         L       +   D+   T LH   +         
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA 219

Query: 72  ------DTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFN 125
                 D  M   +       +  ++ + +        + D+    ++   +    ++ N
Sbjct: 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL--KWIIANMLN 277

Query: 126 ATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
           A D  G++ L++AA    I IV+ LL+ G+          N  G   +D 
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGAD-----PFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 25/177 (14%)

Query: 10  KKDKVQEKDSTQNQNGCTSMHRAPV-----EGDGEMIHCLGKL-----DPQTGSVVEDNG 59
             +K    D+  N          P+     +   + +    K+      P      +   
Sbjct: 3   DINKGPSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMK 62

Query: 60  LTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN 119
           L   L R        M        SL   +S+  +    + +  Q  +F  L++E     
Sbjct: 63  LEAFLQRLLFPEIQEM------PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116

Query: 120 REHLFN---ATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
                N     D+ GN+ LH       + +V  L++ GS+         +N G++ L
Sbjct: 117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-----RLYGDNMGESCL 168

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 25/161 (15%), Positives = 43/161 (26%), Gaps = 17/161 (10%)

Query: 18  DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
           D+ Q       + R       EM   L        S  E           + +     + 
Sbjct: 56  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS--EGGSSNQQQQHVSFDSLLQEVN 113

Query: 78  EIACSESL---AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSL 134
           +   +  L     +     T L      + ++  K LV+    H         D  G S 
Sbjct: 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK----HGSN--RLYGDNMGESC 167

Query: 135 LHLAAL---NKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
           L  A     N        LL+        +  +++  +T L
Sbjct: 168 LVKAVKSVNNYDSGTFEALLD---YLYPCLILEDSMNRTIL 205

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 32/164 (19%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
             +      + +A   G  E    L  ++   G  V   D    T LH AA+N       
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCREL--VE--AGYDVRQPDKENVTLLHWAAINNRI---- 55

Query: 78  EIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK 129
           ++   +                  T L  A +   +     L++    +  +   +  D 
Sbjct: 56  DLV--KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK----YGADP--SLIDG 107

Query: 130 EGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
           EG S +HLAA      IV  L+  G       +D  +  G T L
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKG-----QDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 25/142 (17%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            +  GC+ +H A   G   ++  L  +    G  V+  D    TPL  AA    +    +
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYL--IA--KGQDVDMMDQNGMTPLMWAAYRTHS---VD 157

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKE 130
                 L                TAL  AV +       +L+E           +A + +
Sbjct: 158 PT--RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE----AGAN--VDAQNIK 209

Query: 131 GNSLLHLAALNKLIVIVNLLLE 152
           G S L LA   K + ++N L E
Sbjct: 210 GESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.8 bits (128), Expect = 4e-08
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 21/165 (12%)

Query: 16  EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDT 73
             D        T +H A  +G   M+  L  +    G+     D    + +H AA  G T
Sbjct: 67  IVDQLGGDLNSTPLHWATRQGHLSMVVQL--MK--YGADPSLIDGEGCSCIHLAAQFGHT 122

Query: 74  GMIRE-IACSESLAKLTSDAETALILAV-KSSQIDAFKILVEETKRHNREHLFNATDK-E 130
            ++   IA  + +  +  +  T L+ A  ++  +D  ++L+      N     N  DK  
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT----FNVSV--NLGDKYH 176

Query: 131 GNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
            N+ LH A L     +++LLLE G++     +D++N +G++ALD+
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEAGAN-----VDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 6/49 (12%)

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
              D      +  A    +      L+E G       +   + +  T L
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAG-----YDVRQPDKENVTLL 46

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.3 bits (145), Expect = 2e-10
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 34/164 (20%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            ++ G T++H A      +    L  L+    +     DN   TPLH A           
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRL--LE--ASADANIQDNMGRTPLHAAVSADAQ----G 72

Query: 79  IACSESL---------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK 129
           +   + L         A+   D  T LILA + +     + L+      + +   NA D 
Sbjct: 73  VF--QILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLIN----SHAD--VNAVDD 123

Query: 130 EGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
            G S LH AA    +    +LL+ G        D +NN+ +T L
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLKNG-----ANKDMQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.0 bits (144), Expect = 3e-10
 Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 39/178 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCL---GKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
           Q+  G T +H A       +   L      D         +  TTPL  AA         
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLD----ARMHDGTTPLILAARLAVE---- 105

Query: 78  EIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNAT 127
            +   E L        A      ++AL  A   + +DA  +L++    +  N+    +  
Sbjct: 106 GML--EDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLK----NGANK----DMQ 154

Query: 128 DKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
           +    + L LAA         +LL+          D  ++  +   DI  +    D V
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHF-----ANRDITDHMDRLPRDIAQERMHHDIV 207

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.9 bits (118), Expect = 6e-07
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 31/144 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
           +  +G T +  A       M+  L  ++  + + V   D+   + LH AA   +     +
Sbjct: 88  RMHDGTTPLILAARLAVEGMLEDL--IN--SHADVNAVDDLGKSALHWAAAVNNV----D 139

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATD 128
            A    L         +  +  ET L LA +    +  K+L++    H  NR    + TD
Sbjct: 140 AA--VVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLD----HFANR----DITD 188

Query: 129 KEGNSLLHLAALNKLIVIVNLLLE 152
                   +A       IV LL E
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.9 bits (105), Expect = 3e-05
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDS 182
           N TD+ G + LHLAA          LLE          + ++N G+T L     A++Q  
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEAS-----ADANIQDNMGRTPLHAAVSADAQGV 73

Query: 183 V 183
            
Sbjct: 74  F 74

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 31/190 (16%), Positives = 67/190 (35%), Gaps = 41/190 (21%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
             +      +H A  +G  + +  L  +  +TG      +    T LH A   G      
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRL--I--ETGVSPTIQNRFGCTALHLACKFGCV---- 66

Query: 78  EIACSESL----AKL-TSDAETALILAVKSSQIDAFKILVEETKRHNR------------ 120
           + A  + L            +  + LAV +++ D    LVE  K   +            
Sbjct: 67  DTA--KYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDER 124

Query: 121 ---EHLFNATDKEGNSLLHLAAL--NKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
              E   +    +G + LH       + + ++ +L++ G+S       +K+   +T L  
Sbjct: 125 EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-----PTAKDKADETPLMR 179

Query: 175 -CKANSQDSV 183
             +  +++++
Sbjct: 180 AMEFRNREAL 189

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.7 bits (143), Expect = 9e-10
 Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 30/172 (17%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR- 77
            N+ G + +H A +    ++      +  + G  V   DN  T PL+ +       + + 
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRF--V--EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262

Query: 78  ------EIACSESLAKLTSDA-------ETALILAVKSSQIDAFKILVEETKRHNREHLF 124
                             +            +  A   S+ +  ++L E       E   
Sbjct: 263 LLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE----KLDE--V 316

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK 176
             +   G              +  + L  S+     + +++     +  + K
Sbjct: 317 VRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP----VRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 21  QNQNGCTSMHRAPVEGDG--EMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMI 76
           ++  G T++H     G    EMI  L     Q G+     D    TPL RA    +   +
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKIL----VQLGASPTAKDKADETPLMRAMEFRNREAL 189

Query: 77  R---EIACSESLAKL---TSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKE 130
               +   S+S  +L        + L  A+  +  D     VE     +     N  D E
Sbjct: 190 DLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE--MGID----VNMEDNE 243

Query: 131 GNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
               L+L+    ++++   LL+  +   +      + G T L
Sbjct: 244 HTVPLYLSVRAAMVLLTKELLQ-KTDVFLIQACPYHNGTTVL 284

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDS 182
             +D E    +H+AA       V  L+E G     +    +N  G TAL + CK    D+
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETG-----VSPTIQNRFGCTALHLACKFGCVDT 68

Query: 183 V 183
            
Sbjct: 69  A 69

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 35/146 (23%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
           T LH A++ GD          E L         K      T L  A     +   ++L++
Sbjct: 12  TLLHIASIKGDI----PSV--EYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 114 ETKRHNREH--LFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQT 170
                   H  L N T  + +S LH AA N  + IV LLL  G+S      ++ N  G  
Sbjct: 65  --------HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-----RNAVNIFGLR 111

Query: 171 ALDICKANSQDSVSNEIGSILERAAA 196
            +D     S       +  + E+  +
Sbjct: 112 PVDYTDDES----MKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 31/152 (20%)

Query: 18  DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGM 75
           D   N  G T +H A ++GD   +  L     Q GS     D+   TPLH A  +G    
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYL----LQNGSDPNVKDHAGWTPLHEACNHGHL-- 56

Query: 76  IREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFN 125
             ++   E L               ++ L  A K+  +D  K+L+     +  +R    N
Sbjct: 57  --KVV--ELLLQHKALVNTT-GYQNDSPLHDAAKNGHVDIVKLLLS----YGASR----N 103

Query: 126 ATDKEGNSLLHLAALNKLIVIVNLLLEGSSSD 157
           A +  G   +       +  ++ L  +  SS 
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 93  ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE 152
           ET L +A     I + + L++           N  D  G + LH A  +  + +V LLL+
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQ------NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 153 -GSSSDIIQIDSKNNQGQTAL 172
             +      +++   Q  + L
Sbjct: 65  HKAL-----VNTTGYQNDSPL 80

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 36/163 (22%)

Query: 24  NGCTSMHRAPVEGDGEMIHCL---GKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
           +    +  A   G  + +  L   G           D   T+PLH AA  G         
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG------APFTTDWLGTSPLHLAAQYGHF----STT 50

Query: 81  CSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGN 132
             E L        A+ T    T L +A      +  ++L++    H  +   NA D    
Sbjct: 51  --EVLLRAGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLK----HGAD--VNAKDMLKM 101

Query: 133 SLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
           + LH A  +    +V LL++ G       + +++   +TA DI
Sbjct: 102 TALHWATEHNHQEVVELLIKYG-----ADVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 21/97 (21%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
           TPLH AA  G       I   E L        AK      TAL  A + +  +  ++L++
Sbjct: 69  TPLHMAASEGHA----NIV--EVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIK 121

Query: 114 ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLL 150
               +  +   +   K   +   ++  N    +  +L
Sbjct: 122 ----YGAD--VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.4 bits (140), Expect = 4e-10
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 33/162 (20%)

Query: 24  NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREIAC 81
               S+H+   +G+   +     ++    +V+   D    TPL  AA +G       +  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATR--IE--QENVINHTDEEGFTPLMWAAAHGQI----AVV- 52

Query: 82  SESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS 133
            E L               E+AL LA      D  K+L++       +   N  D  G +
Sbjct: 53  -EFLLQNGADPQLL-GKGRESALSLACSKGYTDIVKMLLD----CGVD--VNEYDWNGGT 104

Query: 134 LLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
            L  A     +  V +LLE G+         + + G  ++D+
Sbjct: 105 PLLYAVHGNHVKCVKMLLESGAD-----PTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 27/143 (18%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
             ++ G T +  A   G   ++  L  L    G+  +    G  + L  A   G T    
Sbjct: 31  HTDEEGFTPLMWAAAHGQIAVVEFL--LQ--NGADPQLLGKGRESALSLACSKGYT---- 82

Query: 78  EIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK 129
           +I   + L             +  T L+ AV  + +   K+L+E       +        
Sbjct: 83  DIV--KMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLE----SGAD--PTIETD 133

Query: 130 EGNSLLHLAALNKLIVIVNLLLE 152
            G + + LA       +  ++  
Sbjct: 134 SGYNSMDLAVALGYRSVQQVIES 156

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.3 bits (142), Expect = 8e-10
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 25/165 (15%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTG-SVVEDNGLTTPLHRAAVNGDTGMIRE- 78
              +  T +  A V G  + ++ L  L    G SV  ++ L +P+H AA  G    +   
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLL--LQ--HGASVQPESDLASPIHEAARRGHVECVNSL 176

Query: 79  IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNA---TDKEGNSLL 135
           IA   ++    S   T L LA ++ Q    K L+E            A     K  +S L
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES----------GADVNQGKGQDSPL 226

Query: 136 HLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKANS 179
           H         +  LL++ G         +KN +G+  +++    S
Sbjct: 227 HAVVRTASEELACLLMDFG-----ADTQAKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 37/178 (20%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
              +  + MH A + G    +  L  +    G  V        +PLH A + G       
Sbjct: 55  DAVSDWSPMHEAAIHGHQLSLRNL--IS--QGWAVNIITADHVSPLHEACLGGHL----S 106

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNA---T 127
               + L           T+D  T L  A  S   D   +L++            A    
Sbjct: 107 CV--KILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQH----------GASVQP 153

Query: 128 DKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
           + +  S +H AA    +  VN L+  G       ID K +   T L + C+   +  V
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYG-----GNIDHKISHLGTPLYLACENQQRACV 206

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 24/162 (14%)

Query: 14  VQEKDSTQ-NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGD 72
           +   D  Q   +G                   G        + +     +P+H AA++G 
Sbjct: 21  MASMDGKQGGMDGSKPAGPR---------DFPGIRLLSNPLMGDAVSDWSPMHEAAIHGH 71

Query: 73  TGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG 131
              +R  I+   ++  +T+D  + L  A     +   KIL++    H  +   N    + 
Sbjct: 72  QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK----HGAQ--VNGVTADW 125

Query: 132 NSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
           ++ L  A ++     VNLLL+ G+S     +  +++   + +
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGAS-----VQPESD-LASPI 161

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 44/211 (20%)

Query: 3   NELIELAKK--DKVQEKDSTQNQNGCTSMHRAPV---EGDGEMIHCLGKLDPQTGSVV-- 55
             L+   ++   ++ + +    + G T + +A +    G  + I  L  +  +T S+   
Sbjct: 30  ESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89

Query: 56  -------EDNGLTTPLHRAAVNGDTGMIR---------EIACSESLAKLTSDA------E 93
                        T LH A    +  ++          + A +    K T         E
Sbjct: 90  VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149

Query: 94  TALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEG 153
             L LA  ++Q+   K L++ + +       +A D  GN++LH         + N     
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVT 206

Query: 154 SSSDII------------QIDSKNNQGQTAL 172
           S  + I              +  N +G T L
Sbjct: 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPL 237

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 9e-10
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 37/190 (19%)

Query: 9   AKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCL------------GKLDPQTGSVVE 56
           + K  V    +     G T++H A    +  ++  L            G    +T     
Sbjct: 85  SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPG 144

Query: 57  DNGLTTPLHRAAVNGDTGMIRE-IACSESLAKLT---SDAETALILAVKSSQ-------- 104
                 PL  AA      +++  +  S   A ++   S   T L   V+ +         
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF 204

Query: 105 -IDAFKILVEETKR-HNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID 162
               +  ++    + H    L   T+++G + L LAA +  I ++  +L+          
Sbjct: 205 VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ---------- 254

Query: 163 SKNNQGQTAL 172
            +        
Sbjct: 255 -REIHEPECR 263

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 32/198 (16%)

Query: 18  DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVED-------NGLTTPLHRAAVN 70
           +         S+  A  + + + +  L     ++   + D        G T  L +A +N
Sbjct: 6   EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKT-CLLKAMLN 64

Query: 71  GDTGMIREI-------ACSESLAKLTSDA--------ETALILAVKSSQIDAFKILVE-- 113
              G    I         ++SL +  + +        +TAL +A++   +    +LVE  
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 114 ------ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQ 167
                       ++         G   L LAA    + IV  LL+ +S     I ++++ 
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ-NSWQPADISARDSV 183

Query: 168 GQTALDICKANSQDSVSN 185
           G T L      + ++V N
Sbjct: 184 GNTVLHALVEVADNTVDN 201

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 31/143 (21%)

Query: 17  KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSV-VEDNGLTTPLHRAAVNGDTGM 75
           K       G   +  A       ++  L +   Q   +   D+   T LH      D  +
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV 199

Query: 76  IREIACSESLAKL-----------------TSDAETALILAVKSSQIDAFKILVEETKRH 118
                 +    ++                      T L LA  S +I     +++     
Sbjct: 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR---- 255

Query: 119 NREHLFNATDKEGNSLLHLAALN 141
                    +       H AA +
Sbjct: 256 ---------EIHEPECRHAAAHH 269

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 21/145 (14%)

Query: 62  TPLHRAAVNGDTGMIR-------EIACSESLAKLTSDAETALILAVKSSQIDAFKILV-- 112
           T LH AA+  +            E+      ++   + +TAL +AV +  ++  + L+  
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSE-LYEGQTALHIAVINQNVNLVRALLAR 97

Query: 113 -----EETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNN 166
                         +  +     G   L  AA      IV LL+E G       I ++++
Sbjct: 98  GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-----ADIRAQDS 152

Query: 167 QGQTALDICKANSQDSVSNEIGSIL 191
            G T L I       + + ++ ++L
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLL 177

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 37/186 (19%)

Query: 14  VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCL----GKLDPQTGSVVEDNGLTTPLHRAAV 69
           V ++ +     G T++H A +  + E    L     +L  +  +     G T  LH A +
Sbjct: 30  VHQRGA----MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAVI 84

Query: 70  NGDTGMIR--------------EIACSESLAKLTSDAETALILAVKSSQIDAFKILVEET 115
           N +  ++R                        L    E  L  A      +  ++L+E  
Sbjct: 85  NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-- 142

Query: 116 KRHNREHLFNATDKEGNSLLHLAALN--KLIV--IVNLLLEGSSSDI---IQIDSKNNQG 168
             H  +    A D  GN++LH+  L   K     + NLLL                NNQG
Sbjct: 143 --HGAD--IRAQDSLGNTVLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQG 197

Query: 169 QTALDI 174
            T   +
Sbjct: 198 LTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 20/126 (15%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL---AKLTSDAETALILAVKSSQIDAFKILVEETKRH 118
           +PL  AA   D   + ++   E      +  +  ETAL +A     ++A  +L+E     
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLME----A 59

Query: 119 N---REHLFNATDKEGNSLLHLAALNKLIVIVNLLLE---------GSSSDIIQIDSKNN 166
                     +   EG + LH+A +N+ + +V  LL            S    +  +   
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 167 QGQTAL 172
            G+  L
Sbjct: 120 YGEHPL 125

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 93  ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE 152
           E+ L+LA K + +   + L +  K    E   +     G + LH+AAL   +    +L+E
Sbjct: 4   ESPLLLAAKENDV---QALSKLLKFEGCE--VHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 153 -GSSSDIIQIDSKNNQGQTAL 172
                    + S+  +GQTAL
Sbjct: 59  AAPELVFEPMTSELYEGQTAL 79

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 27/132 (20%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
           TPLH A ++ D     E+     L            +   T L LAV++      ++L++
Sbjct: 160 TPLHVAVIHKDA----EMV--RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 114 ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
                  +    A    G + L  A L    ++  LL   G                +  
Sbjct: 214 ----AGAD--PTARMYGGRTPLGSALLRPNPILARLLRAHG-----APEPEDGGDKLSPC 262

Query: 173 DI-CKANSQDSV 183
                 +  D+ 
Sbjct: 263 SSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 123 LFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI-CKANSQD 181
           +F    ++G++ LHLA +++    ++ LL   S+    +D +N+ GQTAL +        
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 182 SV 183
           +V
Sbjct: 60  TV 61

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 22/140 (15%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
           +N +G T +H A +  D EM+  L              G T PLH A           + 
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT-PLHLAVEAQAA----SVL 208

Query: 81  CSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGN 132
             E L        A+      T L  A+        ++L      H           +  
Sbjct: 209 --ELLLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRA----HGAP--EPEDGGDKL 259

Query: 133 SLLHLAALNKLIVIVNLLLE 152
           S    +  +      +   E
Sbjct: 260 SPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 17/152 (11%)

Query: 55  VEDNGLTTPLHRAAVNGDTGMIREI----ACSESLAKLTSDAETALILAVKSSQIDAFKI 110
           V ++G T  LH A ++     +  +    A  E L       +TAL LA    +    + 
Sbjct: 5   VTEDGDT-ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 111 LVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE------GSSSDIIQIDSK 164
           L                ++ G++ LHLA   +      +LL+        +SD     S+
Sbjct: 64  LYA----AGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 165 NNQGQTALDICKANSQDSVSNEIGSILERAAA 196
           +    T+      +SQ +  NE     E    
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 44/207 (21%)

Query: 2   SNELIEL-----AKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE 56
               ++      A  + +  ++      G T++H A + G+   +  L       G+ V 
Sbjct: 21  HEPFLDFLLGFSAGHEYLDLQN----DLGQTALHLAAILGEASTVEKL--YA--AGAGVL 72

Query: 57  --DNGLTTPLHRAAVNGDTGMIR--------------EIACSESLAKLTSDAET-ALILA 99
             + G  T LH A                        +   ++S       +   A + +
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132

Query: 100 VKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDI 158
             + + +      +   R        A + +G++ LH+A ++K   +V LL + G+    
Sbjct: 133 QPNPENEEEPRDED--WRLQ----LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD--- 183

Query: 159 IQIDSK-NNQGQTALDI-CKANSQDSV 183
             ++      G+T L +  +A +   +
Sbjct: 184 --LNKPEPTCGRTPLHLAVEAQAASVL 208

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 85  LAKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATDKEGNSLLHLAALNK 142
              +T D +TAL LAV          L+          E+L +  +  G + LHLAA+  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLG----FSAGHEYL-DLQNDLGQTALHLAAILG 56

Query: 143 LIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
               V  L   G       +      G TAL
Sbjct: 57  EASTVEKLYAAG-----AGVLVAERGGHTAL 82

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 23/183 (12%), Positives = 49/183 (26%), Gaps = 38/183 (20%)

Query: 23  QNGCTSMHRAPVEGDGEMI-HCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIAC 81
            +   ++  A + G  E       K         E    +  L+    N +     +I+ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYE----DKESVLKSNILYDVLRNNNDEARYKIS- 58

Query: 82  SESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHL------FNAT 127
              L        ++ T +  T      +    D              +          A 
Sbjct: 59  -MFLINKGADIKSR-TKEGTTLFFPLFQGGGNDITGTT------ELCKIFLEKGADITAL 110

Query: 128 DKEGNSLLHLAALN------KLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI-CKANSQ 180
            K    ++     N      ++I +  L+   S   +     K+  G TAL+   +    
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL---LIKDKWGLTALEFVKRCQKP 167

Query: 181 DSV 183
            ++
Sbjct: 168 IAL 170

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 17/161 (10%), Positives = 50/161 (31%), Gaps = 18/161 (11%)

Query: 4   ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLT 61
           + +EL +K    ++   ++      +     E   ++   L  ++   G+ ++      T
Sbjct: 21  DFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL--IN--KGADIKSRTKEGT 76

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKI--L 111
           T        G   +       +          A      +  +   + +  +D  ++  L
Sbjct: 77  TLFFPLFQGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPL 135

Query: 112 VEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE 152
            +     +   L    DK G + L      +  + + ++ +
Sbjct: 136 YKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMED 175

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 78  EIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL 137
           ++     LA      ETAL LAV+S    +  I+  +    N  +L +    +G++ LH 
Sbjct: 155 DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV--DFLVQNSGNL-DKQTGKGSTALHY 211

Query: 138 AALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR 197
             L      + LLL G +S    I+  N  G+T LDI K             +L +A + 
Sbjct: 212 CCLTDNAECLKLLLRGKAS----IEIANESGETPLDIAKRLKH----EHCEELLTQALSG 263

Query: 198 KQTAPV 203
           +  + V
Sbjct: 264 RFNSHV 269

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 28/159 (17%)

Query: 25  GCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSES 84
              S+H+   +G+ + +    +      +  ++ G  TPL  A+  G+     E      
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERG-FTPLIWASAFGEI----ETV--RF 54

Query: 85  L--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLH 136
           L             + E+AL LA      D   +L+E     + +   N  D  G + L 
Sbjct: 55  LLEWGADPHIL-AKERESALSLASTGGYTDIVGLLLE----RDVD--INIYDWNGGTPLL 107

Query: 137 LAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
            A     +  V  LL  G+      + ++ + G T +D+
Sbjct: 108 YAVRGNHVKCVEALLARGAD-----LTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 33/168 (19%)

Query: 12  DKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAV 69
           + V + D    + G T +  A   G+ E +  L  L+   G+          + L  A+ 
Sbjct: 27  NLVNKPD----ERGFTPLIWASAFGEIETVRFL--LE--WGADPHILAKERESALSLAST 78

Query: 70  NGDTGMIREIACSESL----AKL---TSDAETALILAVKSSQIDAFKILVEETKRHNREH 122
            G T    +I     L      +     +  T L+ AV+ + +   + L+        + 
Sbjct: 79  GGYT----DIV--GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA----RGAD- 127

Query: 123 LFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQT 170
                   G + + LA       +  ++     + I+++   N     
Sbjct: 128 -LTTEADSGYTPMDLAVALGYRKVQQVIE----NHILKLFQSNLVPAD 170

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 33/169 (19%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREI 79
           N+ G T++H A    +  ++  L       G+ V   D+   TPLH AA   DT     I
Sbjct: 51  NEEGITALHNAICGANYSIVDFL----ITAGANVNSPDSHGWTPLHCAASCNDT----VI 102

Query: 80  ACSESL--------AKLTSDAETALILAVKSSQ--IDAFKILVEETKRHNREHLFNATDK 129
               +L        A   SD  TA        +   D    L +      +       + 
Sbjct: 103 C--MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD----VEQS--MGLMNS 154

Query: 130 EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN 178
                L   +      +     EG S   + +  ++   +T       +
Sbjct: 155 GAVYALWDYSAEFGDEL--SFREGES---VTVLRRDGPEETDWWWAALH 198

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 28/129 (21%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
             L  AA+ G+     E+   +               +  TAL  A+  +       L+ 
Sbjct: 23  VLLLDAALTGEL----EVV--QQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLIT 75

Query: 114 ETKRH--NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTA 171
                  N     N+ D  G + LH AA     VI   L++   + I      +  G TA
Sbjct: 76  ----AGAN----VNSPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFATTLSD--GATA 124

Query: 172 LDICKANSQ 180
            + C    +
Sbjct: 125 FEKCDPYRE 133

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            +Q+  T++H A   G  E++  L  L    G  V   D+   +PLH AA  G   +++ 
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFL--LQ--LGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 79  -IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL 137
            +     +  +  +  T L  A   ++ +   +L+E           +A D    + +H 
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHR 145

Query: 138 AALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSN 185
           AA    + +V++LL   +      + ++ +G T L +     +   + 
Sbjct: 146 AAAKGNLKMVHILLFYKA----STNIQDTEGNTPLHLACDEERVEEAK 189

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 25/133 (18%)

Query: 61  TTPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILV 112
               + A        + E+   E +             D+ TAL  A  +   +  + L+
Sbjct: 8   IMICNLAYSGK----LDELK--ERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLL 60

Query: 113 EETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
           +           N  D  G S LH+AA      IV  LL   +     +++ N  G T L
Sbjct: 61  Q----LGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVKGA----HVNAVNQNGCTPL 110

Query: 173 DICKANSQDSVSN 185
               + ++  ++ 
Sbjct: 111 HYAASKNRHEIAV 123

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 78  EIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL 137
           +           +  E  L LAVK +   +   LV+   ++      +A   +GN+ LH 
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFIIQNGGH--LDAKAADGNTALHY 232

Query: 138 AALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR 197
           AAL      + LLL+G +     + + N  G+TALDI    ++     E   +LE+A A 
Sbjct: 233 AALYNQPDCLKLLLKGRAL----VGTVNEAGETALDI----ARKKHHKECEELLEQAQAG 284

Query: 198 KQTAPV 203
               P+
Sbjct: 285 TFAFPL 290

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 32/160 (20%)

Query: 25  GCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREIACS 82
               +  A   GD + +  L  L  +     +  +    T L      G T     IA  
Sbjct: 2   AGDRLSGAAARGDVQEVRRL--LH-RELVHPDALNRFGKTALQVMM-FGST----AIA-- 51

Query: 83  ESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSL 134
             L         +  +   + +  A ++  +D  K+LVE    H  +   N  D  G   
Sbjct: 52  LELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVE----HGAD--VNVPDGTGALP 104

Query: 135 LHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI 174
           +HLA       +V+ L   S      +  ++ +G T L++
Sbjct: 105 IHLAVQEGHTAVVSFLAAES-----DLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 29/142 (20%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            N+ G T++    + G   +   L  L    G+     D   T+P+H AA  G      +
Sbjct: 32  LNRFGKTALQVM-MFGSTAIALEL--LK--QGASPNVQDTSGTSPVHDAARTGFL----D 82

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKE 130
               + L                  + LAV+         L  E+         +  D  
Sbjct: 83  TL--KVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAESD-------LHRRDAR 132

Query: 131 GNSLLHLAALNKLIVIVNLLLE 152
           G + L LA       +V++L  
Sbjct: 133 GLTPLELALQRGAQDLVDILQG 154

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 38/185 (20%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREI 79
           N      +  + +EG+ +++  +  +           ++   T LH A   G T    EI
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRI--IY--EVDDPSLPNDEGITALHNAVCAGHT----EI 85

Query: 80  ACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE-----ETKRHNREHLFNA 126
              + L        A   SD  T L  A   + +   K LVE         ++       
Sbjct: 86  V--KFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS------- 135

Query: 127 TDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNE 186
            D +  +                L         ++   N     AL   +  + D +  +
Sbjct: 136 -DMQTAADKCEEMEEGYTQCSQFLY----GVQEKMGIMNKGVIYALWDYEPQNDDELPMK 190

Query: 187 IGSIL 191
            G  +
Sbjct: 191 EGDCM 195

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 17/162 (10%)

Query: 24  NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE-IACS 82
            G  S+         +              V  +      L  +++ G+  +++  I   
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIA---HGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 83  ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATDKEGNSLLHLAAL 140
           +  +    +  TAL  AV +   +  K LV+       N     NA D +G + LH AA 
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQ----FGVN----VNAADSDGWTPLHCAAS 112

Query: 141 NKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDS 182
              + +   L+E S + +  +    +  QTA D C+   +  
Sbjct: 113 CNNVQVCKFLVE-SGAAVFAMT--YSDMQTAADKCEEMEEGY 151

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 33/173 (19%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            N  G T++H A   G  E++  L     Q G  V   D+   TPLH AA   +     +
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFL----VQFGVNVNAADSDGWTPLHCAASCNNV----Q 117

Query: 79  IACSESL--------AKLTSDAETA--LILAVKSSQIDAFKILVEETKRHNREHLFNATD 128
           +   + L        A   SD +TA      ++       + L     +          +
Sbjct: 118 VC--KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG--VQEK----MGIMN 169

Query: 129 KEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQD 181
           K     L            +  L     D + I  + ++ +      + N ++
Sbjct: 170 KGVIYALWDYEPQN-----DDELPMKEGDCMTIIHREDEDEIEWWWARLNDKE 217

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 13/115 (11%)

Query: 62  TPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNR 120
                A  NGD   +++ +A  E + +        L  A    Q++  + L+        
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL----KGA 64

Query: 121 EHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
           +   NA DK   + L  A     +  V LLL  G+         K   G TA + 
Sbjct: 65  D--INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-----DKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 86  AKLTSDAETALILAVKSSQIDAFKILVEE--TKRHNREHLFNATDKEGNSLLHLAALNKL 143
             L S  +   + A+K+  +D  K  V +            N T + G   LH AA    
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV--------NRTLEGGRKPLHYAADCGQ 52

Query: 144 IVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
           + I+  LL  G+      I++ +    T L
Sbjct: 53  LEILEFLLLKGA-----DINAPDKHHITPL 77

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 35/180 (19%)

Query: 2   SNELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLT 61
           S +L          + D     +G ++ + A  + +  ++  L  L+   G++       
Sbjct: 12  SKQLKSFLSSKDTFKAD----VHGHSASYYAIADNNVRLVCTL--LN--AGALKNLLENE 63

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
            PLH+AA   DT    +I   + L                TAL  AV S  +   K+ V+
Sbjct: 64  FPLHQAATLEDT----KIV--KILLFSGLDDSQF-DDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 114 ETKRHNREHLFNATDKEG-NSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
                N         K G  +  + A +   + IV+  L    S             + +
Sbjct: 117 ----KNWR--LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-----DLAILLSCI 165

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 25/130 (19%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL----AKL-TSDAETALILAVKSSQIDAFKILVEETK 116
           +  + A  + +      +    +L    A     + E  L  A         KIL+    
Sbjct: 33  SASYYAIADNNV----RLV--CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF--- 83

Query: 117 RHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQG-QTALDI 174
               +   +  D +GN+ L+ A  +  +  V L ++        ++      G +T+   
Sbjct: 84  -SGLD--DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-----RLMFYGKTGWKTSFYH 135

Query: 175 -CKANSQDSV 183
               N    V
Sbjct: 136 AVMLNDVSIV 145

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 19/144 (13%)

Query: 18  DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE---DNGLTTPLHRAAVNGDTG 74
            +       + +H     G  +M+  L  LD    +             +  A  N D  
Sbjct: 154 STFDLAILLSCIHITIKNGHVDMMILL--LD--YMTSTNTNNSLLFIPDIKLAIDNKDI- 208

Query: 75  MIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSL 134
              E+   ++L K   +  +A +  V     +  K+++E     + E  + +     +  
Sbjct: 209 ---EML--QALFKYDINIYSANLENVLLDDAEIAKMIIE----KHVE--YKSDSYTKDLD 257

Query: 135 LHLAALNKLIVIVNLLLEGSSSDI 158
           +        I+  N  L     + 
Sbjct: 258 IVKNNKLDEIISKNKELRLMYVNC 281

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.0 bits (126), Expect = 4e-08
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 38/177 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
           ++    T +  A + G    I  L  ++      +E  D   +T L  A  N        
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKL--VE--NFDKLEDKDIEGSTALIWAVKNNRL----G 82

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATD 128
           IA  E L         K     +T L+ ++     +    L+E    H  N     N  +
Sbjct: 83  IA--EKLLSKGSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLE----HGAN----VNDRN 131

Query: 129 KEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI-CKANSQDSV 183
            EG + L +A+      IV  LLE G       I +++  G TA         Q+ +
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELG-----ADISARDLTGLTAEASARIFGRQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.6 bits (125), Expect = 5e-08
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 21/119 (17%)

Query: 57  DNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETK 116
           D                  I +        +  S   T L++A      +A   LVE   
Sbjct: 5   DKNGEIVEKIKDEKS----INQNLDFLRNYR-DSYNRTPLMVACMLGMENAIDKLVE--- 56

Query: 117 RH--NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
            +           D EG++ L  A  N  + I   LL  G       +++K+  G+T L
Sbjct: 57  -NFDK----LEDKDIEGSTALIWAVKNNRLGIAEKLLSKG-----SNVNTKDFSGKTPL 105

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 31/144 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
           ++  G T++  A       +   L  L    GS V   D    TPL  + + G +    E
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKL--LS--KGSNVNTKDFSGKTPLMWSIIFGYS----E 115

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATD 128
           ++    L         +   + ET LI+A K  + +  K L+E       +     +A D
Sbjct: 116 MS--YFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLE----LGAD----ISARD 164

Query: 129 KEGNSLLHLAALNKLIVIVNLLLE 152
             G +    A +     ++ +  E
Sbjct: 165 LTGLTAEASARIFGRQEVIKIFTE 188

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.2 bits (124), Expect = 5e-08
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 33/162 (20%)

Query: 24  NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREIAC 81
           +    +  A   G  + +  L  +    G+ V   D    TPLH AA NG      EI  
Sbjct: 13  DLGKKLLEAARAGRDDEVRIL--MA--NGADVNAEDASGWTPLHLAAFNGHL----EIV- 63

Query: 82  SESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS 133
            E L        A       T L LA     ++  ++L++    +  +   NA D EG++
Sbjct: 64  -EVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEVLLK----NGAD--VNANDMEGHT 115

Query: 134 LLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
            LHLAA+   + IV +LL+ G       +++++  G+TA DI
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNG-----ADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 31/144 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
           ++ +G T +H A   G  E++  L  L    G+ V   D+   TPL  AA+ G      E
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVL--LK--NGADVNAVDHAGMTPLRLAALFGHL----E 94

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATD 128
           I   E L        A    +  T L LA     ++  ++L++    +  +     NA D
Sbjct: 95  IV--EVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLK----NGAD----VNAQD 143

Query: 129 KEGNSLLHLAALNKLIVIVNLLLE 152
           K G +   ++  N    +  +L +
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 90  SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNL 149
           SD    L+ A ++ + D  +IL+     +  +   NA D  G + LHLAA N  + IV +
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMA----NGAD--VNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 150 LLE-GSSSDIIQIDSKNNQGQTAL 172
           LL+ G       +++ ++ G T L
Sbjct: 66  LLKNG-----ADVNAVDHAGMTPL 84

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.0 bits (121), Expect = 5e-08
 Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 27/120 (22%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
           TPLH AA NG      E+   + L        AK   +  T L LA ++  ++  K+L+E
Sbjct: 4   TPLHLAARNGHL----EVV--KLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 114 ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
                  +   NA DK G + LHLAA N  + +V LLLE G       +++K+  G+T L
Sbjct: 57  ----AGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 27/139 (19%)

Query: 24  NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREIAC 81
           NG T +H A   G  E++  L  L+   G+ V   D    TPLH AA NG      E+  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLL--LE--AGADVNAKDKNGRTPLHLAARNGHL----EVV- 51

Query: 82  SESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS 133
            + L        AK   +  T L LA ++  ++  K+L+E       +   NA DK G +
Sbjct: 52  -KLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE----AGAD--VNAKDKNGRT 103

Query: 134 LLHLAALNKLIVIVNLLLE 152
            LHLAA N  + +V LLLE
Sbjct: 104 PLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.9 bits (100), Expect = 4e-05
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 12/83 (14%)

Query: 91  DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLL 150
           +  T L LA ++  ++  K+L+E     +     NA DK G + LHLAA N  + +V LL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE--AGAD----VNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 151 LE-GSSSDIIQIDSKNNQGQTAL 172
           LE G+      +++K+  G+T L
Sbjct: 55  LEAGA-----DVNAKDKNGRTPL 72

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 49.7 bits (120), Expect = 9e-08
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 31/124 (25%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
             L  AA  G      +      L        AK      T L LA     ++  ++L++
Sbjct: 16  KKLLEAARAGQD----DEV--RILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 114 ETKRH--NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQT 170
               +  +     NA D  G + LHLAA    + I  +LL+ G       +++++  G+T
Sbjct: 69  ----NGADV----NAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-----ADVNAQDKFGKT 115

Query: 171 ALDI 174
           A DI
Sbjct: 116 AFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 82  SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATDKEGNSLLHLAA 139
           S       SD    L+ A ++ Q D  +IL+     +  +     NA D+ G + L+LA 
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQDDEVRILMA----NGAD----VNAKDEYGLTPLYLAT 55

Query: 140 LNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
            +  + IV +LL+ G       +++ +  G T L
Sbjct: 56  AHGHLEIVEVLLKNG-----ADVNAVDAIGFTPL 84

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.0 bits (100), Expect = 4e-05
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 25/106 (23%)

Query: 57  DNGLTTPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAF 108
           D    TPL+ A  +G      EI   E L        A   +   T L LA     ++  
Sbjct: 44  DEYGLTPLYLATAHGHL----EIV--EVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIA 96

Query: 109 KILVEETKRH--NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE 152
           ++L++    H  +     NA DK G +   ++  N    +  +L +
Sbjct: 97  EVLLK----HGAD----VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 27/120 (22%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
           TPLH AA NG      E    + L        A+ + D  T L LA K+   +  K+L+ 
Sbjct: 11  TPLHNAAKNGHA----EEV--KKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLA 63

Query: 114 ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
                  +   NA  K+GN+  HLA  N    IV LL   G+      +++++       
Sbjct: 64  ----KGAD--VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-----DVNARSWGSSHHH 112

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 25/126 (19%)

Query: 57  DNGLTTPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAF 108
           +    T L    +        EIA    L         K        +  A ++  +D  
Sbjct: 35  NGFGRTALQVMKLGN-----PEIA--RRLLLRGANPDLK-DRTGFAVIHDAARAGFLDTL 86

Query: 109 KILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQG 168
           + L+E       +   N  D EGN  LHLAA    + +V  L++ ++S+   +  +N++G
Sbjct: 87  QTLLE----FQAD--VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN---VGHRNHKG 137

Query: 169 QTALDI 174
            TA D+
Sbjct: 138 DTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.1 bits (116), Expect = 5e-07
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 32/127 (25%)

Query: 57  DNGLTTPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAF 108
                  L  AA  GD     E     SL        A+      TAL +    +  +  
Sbjct: 2   AEPWGNELASAAARGDL----EQL--TSLLQNNVNVNAQ-NGFGRTALQVMKLGN-PEIA 53

Query: 109 KILVEETKRH--NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKN 165
           + L+        N     +  D+ G +++H AA    +  +  LLE         ++ ++
Sbjct: 54  RRLLL----RGAN----PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-----ADVNIED 100

Query: 166 NQGQTAL 172
           N+G   L
Sbjct: 101 NEGNLPL 107

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 27/142 (19%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
           QN  G T++      G+ E+   L  L    G+  +  D      +H AA  G      +
Sbjct: 34  QNGFGRTALQVM-KLGNPEIARRL--LL--RGANPDLKDRTGFAVIHDAARAGFL----D 84

Query: 79  IACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKE 130
               ++L         +  ++    L LA K   +   + LV+    H   ++    + +
Sbjct: 85  TL--QTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVK----HTASNV-GHRNHK 136

Query: 131 GNSLLHLAALNKLIVIVNLLLE 152
           G++   LA L     +V+L+  
Sbjct: 137 GDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 3e-05
 Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 13/86 (15%)

Query: 88  LTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIV 147
           +       L  A     ++    L++    +N     NA +  G + L +  L     I 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQ----NNVN--VNAQNGFGRTALQVMKLGNP-EIA 53

Query: 148 NLLLE-GSSSDIIQIDSKNNQGQTAL 172
             LL  G        D K+  G   +
Sbjct: 54  RRLLLRG-----ANPDLKDRTGFAVI 74

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 62  TPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNRE 121
                   +G +      +   + A + S+ ET    A + +   A   L+      +R+
Sbjct: 17  MEYLIEWKDGHSPSW-VPSSYIA-ADVVSEYETPWWTAARKADEQALSQLL-----EDRD 69

Query: 122 HLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
              +A D+ G + L   A       V LL E G  +D+   D +   G TAL
Sbjct: 70  --VDAVDENGRTALLFVAGLGSDKCVRLLAEAG--ADLDHRDMRG--GLTAL 115

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 26/187 (13%), Positives = 50/187 (26%), Gaps = 49/187 (26%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREI 79
                T    A  + D + +  L +        V+  D    T L   A  G      + 
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSD----KC 92

Query: 80  ACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRH--NREHLFNATDK 129
                L         +      TAL +A    + +  + LVE       +        D+
Sbjct: 93  V--RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE----LGAD----IEVEDE 142

Query: 130 EGNSLLHLAALNKLIVIVNLLLE------------------GSSSDIIQIDSKNNQGQTA 171
            G + L LA            ++                     +++ +I  K  +G+  
Sbjct: 143 RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDV 202

Query: 172 LDICKAN 178
             + +  
Sbjct: 203 EYLVRWK 209

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 38/178 (21%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
            ++NG T++      G  + +  L +            GLT  LH AA         E+ 
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT-ALHMAAGYVRP----EVV 127

Query: 81  CSESL--------AKLTSDAETALILAVKSSQIDAFKIL------------VEETKRHNR 120
             E+L         +      TAL LA +  +                   +   +    
Sbjct: 128 --EALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184

Query: 121 EHLF----NATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI 174
           E+           +G  + +L           +        + +  +K+   +  L+ 
Sbjct: 185 EYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG----VHVAEDVAKDY--EDGLEY 236

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 32/163 (19%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
               G         +G          +     + V      TP   AA   D     +  
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVSEY-ETPWWTAARKADE----QAL 60

Query: 81  CSESL-------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD-KEGN 132
               L       A    +  TAL+           ++L E       +   +  D + G 
Sbjct: 61  --SQLLEDRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE----AGAD--LDHRDMRGGL 111

Query: 133 SLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDI 174
           + LH+AA      +V  L+E G       I+ ++ +G TAL++
Sbjct: 112 TALHMAAGYVRPEVVEALVELG-----ADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 27/141 (19%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIREI 79
                T    A  + D + +  L +        V+  D    T L   A  G      + 
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSD----KC 91

Query: 80  ACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG 131
                L         +      TAL +A    + +  + LVE       +      D+ G
Sbjct: 92  V--RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE----LGAD--IEVEDERG 143

Query: 132 NSLLHLAALNKLIVIVNLLLE 152
            + L LA            ++
Sbjct: 144 LTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 16/88 (18%)

Query: 86  AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNA-TDKEGNSLLHLAALNKLI 144
           ++   +     ++  K     ++                 A    E  +    AA     
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYI----------AADVVSEYETPWWTAARKADE 57

Query: 145 VIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
             ++ LLE        +D+ +  G+TAL
Sbjct: 58  QALSQLLEDRD-----VDAVDENGRTAL 80

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 55  VEDNGLTTPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVE 113
           +        L  AA  G    +R+ +        L       + + +  S     ++L+ 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLL 65

Query: 114 ETKRHNREHLFNATDKEGNSL-LHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTA 171
               H  E   N  D    +  +H AA    +  + +L   G+     ++D  +  G+  
Sbjct: 66  ----HGAE--PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-----RLDVCDAWGRLP 114

Query: 172 LDI 174
           +D+
Sbjct: 115 VDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 20/143 (13%), Positives = 36/143 (25%), Gaps = 27/143 (18%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIR 77
               +    +  A   G  E +  L  L  + G+     +     P+      G      
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQL--L--EAGADPNALNRFGRRPIQVMM-MGSA---- 57

Query: 78  EIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK 129
           ++A  E L            +     +  A +   +D   +L             +  D 
Sbjct: 58  QVA--ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR----AGAR--LDVCDA 109

Query: 130 EGNSLLHLAALNKLIVIVNLLLE 152
            G   + LA       I   L  
Sbjct: 110 WGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTAL 172
           +      ++ L  AA    +  V  LLE G+       ++ N  G+  +
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGA-----DPNALNRFGRRPI 49

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 55  VEDNGLTTPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVE 113
                    L  AA  G    +R  +    +     S     + + +  S     ++L+ 
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLL 65

Query: 114 ETKRHNREHLFNATDKEGNSL-LHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTA 171
               H  E   N  D    +  +H AA    +  + +L   G+     ++D ++  G+  
Sbjct: 66  ----HGAE--PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-----RLDVRDAWGRLP 114

Query: 172 LDI 174
           +D+
Sbjct: 115 VDL 117

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 46.7 bits (110), Expect = 7e-06
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 14/120 (11%)

Query: 91  DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLL 150
           D  T LI A  ++ +    +  E   ++      N  D  G   LH A +     +  L 
Sbjct: 234 DNATPLIQATAANSL----LACEFLLQNGAN--VNQADSAGRGPLHHATILGHTGLACLF 287

Query: 151 LEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTAPVSELPIDT 210
           L+  +     + +++++G+  L I    + ++ + +I ++L  A  R+  A   +   +T
Sbjct: 288 LKRGAD----LGARDSEGRDPLTI----AMETANADIVTLLRLAKMREAEAAQGQAGDET 339

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 12/83 (14%)

Query: 91  DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLL 150
           +  T L LA ++  ++  K+L+E     +     NA DK G + LHLAA N  + +V LL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE--AGADV----NAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 151 LE-GSSSDIIQIDSKNNQGQTAL 172
           LE G+      +++K+  G+T L
Sbjct: 55  LEAGA-----DVNAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 21/99 (21%)

Query: 62  TPLHRAAVNGDTGMIREIACSESL--------AKLTSDAETALILAVKSSQIDAFKILVE 113
           TPLH AA NG      E+   + L        AK   +  T L LA ++  ++  K+L+E
Sbjct: 4   TPLHLAARNGHL----EVV--KLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 114 ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE 152
                +     NA DK G + LHLAA N  + +V LLLE
Sbjct: 57  --AGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 42/325 (12%), Positives = 87/325 (26%), Gaps = 89/325 (27%)

Query: 1   MSNELIELAKKDKVQEKDSTQNQNGCTSMHRAP---VEGDGEMIHCLGK--LDPQTGSVV 55
           + N+    AK +  + +   + +     +  A    ++G   ++   GK  +      V 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---VLGS-GKTWV---ALDVC 171

Query: 56  EDNGLTTP-------LHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAF 108
               +          L+    N    ++      E L KL    +       +S      
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDPNW--TSRSDHSSNI 223

Query: 109 KILVEETKRHNREHLFNATDKEGNSLL---------HLAALN---KLIVIVNLLLEGSSS 156
           K+ +   +   R  L +   +  N LL            A N   K+++         + 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYE--NCLLVLLNVQNAKAWNAFNLSCKILLT--------TR 273

Query: 157 DIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTAPVSELPIDTTSGFWI 216
                D  +    T + +          +     L     +       +          +
Sbjct: 274 FKQVTDFLSAATTTHISL----------DHHSMTLTPDEVKSLLLKYLDCRPQD-----L 318

Query: 217 PIETKNVILMVLGMIATAFFAATCDLPNSFVKGNHPQGE---------LNN-HPQGQK-- 264
           P E        L +IA     +  D   ++    H   +         LN   P   +  
Sbjct: 319 PREVLTTNPRRLSIIA----ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 265 FDA-----KDVISGKLPTVVYLMIF 284
           FD             +PT++ L + 
Sbjct: 375 FDRLSVFPPSA---HIPTIL-LSLI 395

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 16/124 (12%)

Query: 60  LTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN 119
           +      +  +G   ++ +  C              L   ++ +       +        
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECL--------QGFYMLRNLIRRNDEVLLDDIRFLLSIPG 305

Query: 120 REHL--FNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNN----QGQTALD 173
            + L        + N LL LA          LLL  S   ++ +   NN    +    LD
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLL--SIPSVLALTKANNYYINETGGRLD 363

Query: 174 ICKA 177
           +   
Sbjct: 364 LRAV 367

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 12/99 (12%)

Query: 86  AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIV 145
           + + SD    L+ A ++ Q D  +IL+     +  +    A DK G++ LHLAA N  + 
Sbjct: 18  SHMGSDLGKKLLEAARAGQDDEVRILMA----NGAD--VAAKDKNGSTPLHLAARNGHLE 71

Query: 146 IVNLLLE-GSSSDIIQIDSKNNQGQTALDICKANSQDSV 183
           +V LLLE G+      + +++  G+TA DI   N  + +
Sbjct: 72  VVKLLLEAGAD-----VXAQDKFGKTAFDISIDNGNEDL 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.8e-33  Score=241.37  Aligned_cols=158  Identities=24%  Similarity=0.372  Sum_probs=148.0

Q ss_pred             hHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCH
Q 015882           27 TSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQI  105 (399)
Q Consensus        27 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~  105 (399)
                      ++|+.||..|+.++|+.|+++|+++  +.+|.+|.||||+|+..|+.++++.| +.+++++.+|.+|+||||+|+.+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv--n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence            5799999999999999999999999  89999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHH
Q 015882          106 DAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSN  185 (399)
Q Consensus       106 ~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~  185 (399)
                      +++++|++.|++      +|.+|.+|+||||+|++.|+.+++++|++.|+    +++.+|.+|+||||+|+.    .++.
T Consensus        84 ~~v~~Ll~~gad------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~G~TpL~~A~~----~g~~  149 (169)
T 4gpm_A           84 EVVKLLISKGAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA----DVNTSDSDGRTPLDLARE----HGNE  149 (169)
T ss_dssp             HHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TTCH
T ss_pred             HHHHHHHHCcCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHHHH----cCCH
Confidence            999999999887      88999999999999999999999999999999    999999999999999999    7889


Q ss_pred             HHHHHHHHccCccCC
Q 015882          186 EIGSILERAAARKQT  200 (399)
Q Consensus       186 ~i~~~L~~~ga~~~~  200 (399)
                      +++++|+++||+..-
T Consensus       150 ~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          150 EVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHHHTC------
T ss_pred             HHHHHHHHCCCCcCC
Confidence            999999999998763

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=2.5e-31  Score=246.48  Aligned_cols=182  Identities=20%  Similarity=0.227  Sum_probs=164.3

Q ss_pred             HHHHHHHhc-CCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            4 ELIELAKKD-KVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         4 e~i~~l~~~-~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      ++++.|.+. ..+..++.+|..|+||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| ..
T Consensus        23 ~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  100 (282)
T 1oy3_D           23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTALHLACRVRAHTCACVLLQP  100 (282)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTSCCHHHHHTTTTCHHHHHHHSSS
T ss_pred             HHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCcchhHhhhcc
Confidence            567777654 334457889999999999999999999999999999999  89999999999999999999999999 65


Q ss_pred             cCC-----------------------------------------------ccccccCCchHHHHHHHcCCHHHHHHHHHh
Q 015882           82 SES-----------------------------------------------LAKLTSDAETALILAVKSSQIDAFKILVEE  114 (399)
Q Consensus        82 ~~~-----------------------------------------------~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  114 (399)
                      +..                                               ++..|..|+||||+|+..|+.+++++|++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  180 (282)
T 1oy3_D          101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA  180 (282)
T ss_dssp             CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            433                                               667788999999999999999999999999


Q ss_pred             hhcccccccccccCCC-CCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHH
Q 015882          115 TKRHNREHLFNATDKE-GNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILER  193 (399)
Q Consensus       115 ~~~~~~~~lin~~d~~-G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~  193 (399)
                      |++      ++.++.. |+||||+|++.|+.+++++|++.|+    +++.+|.+|+||||+|+.    .++.+++++|++
T Consensus       181 g~~------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~  246 (282)
T 1oy3_D          181 GAD------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA----DPTARMYGGRTPLGSALL----RPNPILARLLRA  246 (282)
T ss_dssp             TCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHT----SSCHHHHHHHHH
T ss_pred             CCC------CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC----CCcccccCCCCHHHHHHH----cCCcHHHHHHHH
Confidence            887      7778754 9999999999999999999999999    999999999999999998    788999999999


Q ss_pred             ccCccCCC
Q 015882          194 AAARKQTA  201 (399)
Q Consensus       194 ~ga~~~~~  201 (399)
                      +|++.+..
T Consensus       247 ~ga~~~~~  254 (282)
T 1oy3_D          247 HGAPEPED  254 (282)
T ss_dssp             TTCCCCCC
T ss_pred             cCCCcCcC
Confidence            99998754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.2e-31  Score=235.42  Aligned_cols=166  Identities=19%  Similarity=0.128  Sum_probs=157.8

Q ss_pred             CccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCC
Q 015882           14 VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDA   92 (399)
Q Consensus        14 ~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g   92 (399)
                      .+.+.+.+|.+|+||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| +.+.+++.+|..|
T Consensus        24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  101 (192)
T 2rfm_A           24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG  101 (192)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred             hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc--ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            34556788999999999999999999999999999998  88999999999999999999999999 8899999999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHH
Q 015882           93 ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL  172 (399)
Q Consensus        93 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl  172 (399)
                      +||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|++.|+    +++.+|..|.||+
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l  171 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLLEHGAN------VNDRNLEGETPLIVASKYGRSEIVKKLLELGA----DISARDLTGLTAE  171 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CTTCBCTTSCBHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHH
Confidence            9999999999999999999999877      78999999999999999999999999999999    9999999999999


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHcc
Q 015882          173 DICKANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       173 ~~a~~~~~~~~~~~i~~~L~~~g  195 (399)
                      |+|+.    .++.+++++|+++|
T Consensus       172 ~~A~~----~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          172 ASARI----FGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHH----TTCHHHHHHHHHHH
T ss_pred             HHHHH----hCcHHHHHHHHhcc
Confidence            99998    88899999999876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=1.2e-30  Score=235.32  Aligned_cols=180  Identities=19%  Similarity=0.225  Sum_probs=166.1

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      +.++.+.+.. +...+..|.+|.||||+|+..|+.+++++|++++.++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        20 ~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   96 (231)
T 3aji_A           20 DELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV--NDKDDAGWSPLHIAASAGXDEIVKALLVKG   96 (231)
T ss_dssp             HHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC--CCcCCCCCCHHHHHHHcCHHHHHHHHHHcC
Confidence            4455554443 4457888999999999999999999999999999998  88999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      .+++.+|..|+||||.|+..|+.+++++|++.|.+      ++.+|..|+||||+|+..|+.+++++|++.|+    +++
T Consensus        97 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~  166 (231)
T 3aji_A           97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKMVHILLFYKA----STN  166 (231)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CSC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC----Ccc
Confidence            99999999999999999999999999999999877      78899999999999999999999999999999    999


Q ss_pred             ccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          163 SKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       163 ~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      .+|.+|+||||+|+.    .++.+++++|+++|++...
T Consensus       167 ~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  200 (231)
T 3aji_A          167 IQDTEGNTPLHLACD----EERVEEAKFLVTQGASIYI  200 (231)
T ss_dssp             CCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             ccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCCCC
Confidence            999999999999998    7889999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=7.7e-31  Score=231.36  Aligned_cols=175  Identities=23%  Similarity=0.262  Sum_probs=159.1

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh--hc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--AC   81 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L--~~   81 (399)
                      +.++.+.... +..++..|.+|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++|  ..
T Consensus        19 ~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~   95 (201)
T 3hra_A           19 KKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI--NLQNSISDSPYLYAGAQGRTEILAYMLKHA   95 (201)
T ss_dssp             HHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            4455555443 3347888999999999999999999999999999999  88999999999999999999999999  67


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhh-hcccccccccccCCCCCcHHHHHHHcCc-----HHHHHHHHhCCC
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEET-KRHNREHLFNATDKEGNSLLHLAALNKL-----IVIVNLLLEGSS  155 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~lin~~d~~G~T~LHlA~~~~~-----~~iv~~Ll~~g~  155 (399)
                      +.+++..|..|+||||.|+..|+.+++++|++.+ .+      ++.+|..|+||||+|+..++     .+++++|++.|+
T Consensus        96 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga  169 (201)
T 3hra_A           96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA  169 (201)
T ss_dssp             CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC------TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC
T ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC
Confidence            7789999999999999999999999999999997 44      78999999999999999988     999999999999


Q ss_pred             CCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHcc
Q 015882          156 SDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       156 ~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~g  195 (399)
                          +++.+|.+|+||+|+|+.    .++.+++++|+++|
T Consensus       170 ----~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          170 ----DQSIKDNSGRTAMDYANQ----KGYTEISKILAQYN  201 (201)
T ss_dssp             ----CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred             ----CCCccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence                999999999999999998    78899999999876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.1e-30  Score=232.39  Aligned_cols=166  Identities=25%  Similarity=0.281  Sum_probs=107.0

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccC-CccccccCCchHH
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSE-SLAKLTSDAETAL   96 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~-~~~~~d~~g~t~L   96 (399)
                      ...|.+|+||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| +.+. .++..+..|+|||
T Consensus        19 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L   96 (223)
T 2f8y_A           19 NQTDRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL   96 (223)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHH
T ss_pred             cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHH
Confidence            334566666666666666666666666666666  56666666666666666666666666 4333 5666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHH
Q 015882           97 ILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK  176 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~  176 (399)
                      |+|+..|+.+++++|++.+++      ++.+|..|+||||+|+..++.+++++|++.|+    +++.+|..|+||+|+|+
T Consensus        97 ~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~  166 (223)
T 2f8y_A           97 ILAARLAVEGMLEDLINSHAD------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAA  166 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHcCCC------CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCcCHHHHHH
Confidence            666666666666666666554      55666666666666666666666666666666    66666666666666666


Q ss_pred             hcCCCCcHHHHHHHHHHccCccCC
Q 015882          177 ANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       177 ~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      .    .++.+++++|+++|++.+.
T Consensus       167 ~----~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          167 R----EGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             H----HTCHHHHHHHHHTTCCTTC
T ss_pred             H----cCCHHHHHHHHHcCCCCcc
Confidence            5    5556666666666665544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=6.5e-31  Score=241.04  Aligned_cols=180  Identities=23%  Similarity=0.247  Sum_probs=156.6

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+.. .......|.+|+||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        37 ~~v~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  113 (253)
T 1yyh_A           37 AVISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNR  113 (253)
T ss_dssp             ----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             HHHHHHHHcc-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4556665544 3344567899999999999999999999999999999  89999999999999999999999999 665


Q ss_pred             C-CccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccc
Q 015882           83 E-SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQI  161 (399)
Q Consensus        83 ~-~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~  161 (399)
                      . +++.+|.+|+||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|++.|+    ++
T Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~  183 (253)
T 1yyh_A          114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NK  183 (253)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CT
T ss_pred             CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CC
Confidence            5 8899999999999999999999999999999877      88999999999999999999999999999999    99


Q ss_pred             cccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          162 DSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       162 ~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +.+|..|+||||+|+.    .++.+++++|+++|++.+.
T Consensus       184 ~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          184 DMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             TCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCccc
Confidence            9999999999999998    7889999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=3.3e-30  Score=231.72  Aligned_cols=183  Identities=21%  Similarity=0.175  Sum_probs=164.7

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVV-EDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~-~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      ++++.+.+.. +......|.+|.||||+|+..|+.+++++|++++++..... +|..|.||||+|+..|+.+++++| +.
T Consensus        16 ~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   94 (228)
T 2dzn_A           16 FKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR   94 (228)
T ss_dssp             HHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS
T ss_pred             HHHHHHHhcC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            5667776655 44556689999999999999999999999999994442255 889999999999999999999999 77


Q ss_pred             c--CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCC-CCCc
Q 015882           82 S--ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS-SSDI  158 (399)
Q Consensus        82 ~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g-~~~~  158 (399)
                      +  .+++..|.+|+||||.|+..|+.+++++|++.|.+      ++.+|..|+||||+|+..|+.+++++|++.| +   
T Consensus        95 g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---  165 (228)
T 2dzn_A           95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---  165 (228)
T ss_dssp             SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCC---
T ss_pred             CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcc---
Confidence            6  88899999999999999999999999999999877      7899999999999999999999999999999 6   


Q ss_pred             ccccccccCCCCHHHHHHhcCCCCcHHHHHHHHH-HccCccCCC
Q 015882          159 IQIDSKNNQGQTALDICKANSQDSVSNEIGSILE-RAAARKQTA  201 (399)
Q Consensus       159 v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~-~~ga~~~~~  201 (399)
                       +++.+|.+|+||||+|+.    .++.+++++|+ ++|++.+..
T Consensus       166 -~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~~~  204 (228)
T 2dzn_A          166 -AVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDLV  204 (228)
T ss_dssp             -CSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCCB
T ss_pred             -cccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCCcc
Confidence             899999999999999999    78899999999 999987753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=1.6e-30  Score=234.35  Aligned_cols=177  Identities=21%  Similarity=0.249  Sum_probs=165.5

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      .++++.+.+...  .++.+|..|+||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| +.
T Consensus        53 ~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  128 (231)
T 3aji_A           53 TEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV--NAVNQNGCTPLHYAASKNRHEIAVMLLEG  128 (231)
T ss_dssp             HHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHhCC--CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            367888876643  36788999999999999999999999999999999  88999999999999999999999999 99


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccc
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQI  161 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~  161 (399)
                      +.+++.+|..|+||||.|+..|+.+++++|++.+++      ++.+|.+|+||||+|+..++.+++++|++.|+    ++
T Consensus       129 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~  198 (231)
T 3aji_A          129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGA----SI  198 (231)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CS
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC------ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC----CC
Confidence            999999999999999999999999999999999877      78899999999999999999999999999999    99


Q ss_pred             cccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCc
Q 015882          162 DSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR  197 (399)
Q Consensus       162 ~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~  197 (399)
                      +.+|.+|+||+|+|..    .++.++.++|.++|++
T Consensus       199 ~~~~~~g~t~l~~A~~----~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          199 YIENKEEKTPLQVAKG----GLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CCCCTTSCCHHHHSCH----HHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHHh----hHHHHHHHHHcccccc
Confidence            9999999999999987    7889999999998865

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.1e-31  Score=247.02  Aligned_cols=174  Identities=21%  Similarity=0.322  Sum_probs=141.7

Q ss_pred             HHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccC
Q 015882            5 LIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSE   83 (399)
Q Consensus         5 ~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~   83 (399)
                      +++.+.+..  ..++.+|.+|+||||+|+..|+.+++++|++.++++  +.++.+|.||+|+|+..++.++++.| +.++
T Consensus        68 ~v~~Ll~~G--advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~--~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  143 (269)
T 4b93_B           68 RLAKVPASG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA--GARNADQAVPLHLACQQGHFQVVKCLLDSNA  143 (269)
T ss_dssp             -------CC--CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc--CccCCCCCCccccccccChHHHHHHHHHCCC
Confidence            445554433  236778899999999999999999999999999998  78899999999999999999999999 8899


Q ss_pred             CccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccc
Q 015882           84 SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDS  163 (399)
Q Consensus        84 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~  163 (399)
                      +++.+|..|+||||+|+.+|+.+++++|++.|++      +|.+|..|+||||+|+..|+.+++++|++.|+    +++.
T Consensus       144 ~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga----d~~~  213 (269)
T 4b93_B          144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS------INASNNKGNTALHEAVIEKHVFVVELLLLHGA----SVQV  213 (269)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----CSCC
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC------CCccccCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCC
Confidence            9999999999999999999999999999998877      78899999999999999999999999999998    8999


Q ss_pred             cccCCCCHHHHHHhcCCCCcH-HHHHHHHHHccC
Q 015882          164 KNNQGQTALDICKANSQDSVS-NEIGSILERAAA  196 (399)
Q Consensus       164 ~n~~g~Tpl~~a~~~~~~~~~-~~i~~~L~~~ga  196 (399)
                      +|.+|+||||+|++    .+. .++.+.|...++
T Consensus       214 ~d~~G~TpL~~A~~----~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          214 LNKRQRTAVDCAEQ----NSKIMELLQVVPSCVA  243 (269)
T ss_dssp             CCTTSCCSGGGSCT----TCHHHHHTTC------
T ss_pred             cCCCCCCHHHHHHh----CCcHHHHHHHHHHhch
Confidence            99999999999976    332 344444444444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.4e-30  Score=223.27  Aligned_cols=160  Identities=20%  Similarity=0.223  Sum_probs=153.0

Q ss_pred             CCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHc
Q 015882           24 NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKS  102 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~  102 (399)
                      +|.||||.|+..|+.++++.|++.+.++  +.+|..|.||||+|+..|+.+++++| +.+.+++..|..|+||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI--NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            6899999999999999999999999998  89999999999999999999999999 88999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCC
Q 015882          103 SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDS  182 (399)
Q Consensus       103 g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~  182 (399)
                      |+.+++++|++.+++      ++.+|.+|+||||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|+.    .
T Consensus        80 ~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A~~----~  145 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA----DPTIETDSGYNSMDLAVA----L  145 (167)
T ss_dssp             TCHHHHHHHHHHTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----H
T ss_pred             CCHHHHHHHHHCCCC------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHH----c
Confidence            999999999999877      78999999999999999999999999999999    999999999999999998    7


Q ss_pred             cHHHHHHHHHHccCccC
Q 015882          183 VSNEIGSILERAAARKQ  199 (399)
Q Consensus       183 ~~~~i~~~L~~~ga~~~  199 (399)
                      ++.+++++|++++++..
T Consensus       146 ~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          146 GYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             TCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            88999999999987654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=1.4e-30  Score=233.48  Aligned_cols=180  Identities=17%  Similarity=0.195  Sum_probs=167.1

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHh-h
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDP-QTGSVVEDNGLTTPLHRAAVNGDTGMIREI-A   80 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~-~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~   80 (399)
                      .++++.|.+...  .++..|.+|.||||+|+..|+.+++++|+++++ ++  +.++..|.||||+|+..|+.+++++| +
T Consensus        38 ~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  113 (223)
T 2f8y_A           38 SDAAKRLLEASA--DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLILAARLAVEGMLEDLIN  113 (223)
T ss_dssp             HHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCcHHHHHHHhCcHHHHHHHHH
Confidence            367888876643  367789999999999999999999999999988 55  88999999999999999999999999 9


Q ss_pred             ccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccc
Q 015882           81 CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQ  160 (399)
Q Consensus        81 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~  160 (399)
                      .+.+++.+|..|+||||+|+..|+.+++++|++.|++      ++.+|..|+||||+|++.++.+++++|++.|+    +
T Consensus       114 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~  183 (223)
T 2f8y_A          114 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPLFLAAREGSYETAKVLLDHFA----N  183 (223)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----C
T ss_pred             cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC----C
Confidence            9999999999999999999999999999999999877      78899999999999999999999999999999    9


Q ss_pred             ccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          161 IDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       161 ~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      ++.+|..|+||+|+|+.    .++.+++++|+++|+....
T Consensus       184 ~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          184 RDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             TTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSCC
T ss_pred             CccccccCCCHHHHHHH----hcchHHHHHHHHcCCCccc
Confidence            99999999999999998    8899999999999987664

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.3e-30  Score=221.94  Aligned_cols=158  Identities=22%  Similarity=0.275  Sum_probs=148.1

Q ss_pred             CCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHH
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVK  101 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~  101 (399)
                      +...||||.|+..|+.++++.|+++++++  +.+|..|.||||+|+. |+.+++++| +.+.+++.+|..|+||||.|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc--cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            45689999999999999999999999999  8899999999999999 999999999 9999999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccc-ccccccCCCCHHHHHHhcCC
Q 015882          102 SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQ-IDSKNNQGQTALDICKANSQ  180 (399)
Q Consensus       102 ~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~-~~~~n~~g~Tpl~~a~~~~~  180 (399)
                      .|+.+++++|++.|.+      ++.+|.+|+||||+|++.|+.+++++|++.|+    + ++.+|..|+||+|+|+.   
T Consensus        80 ~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~g~t~l~~A~~---  146 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDLARL---  146 (162)
T ss_dssp             HTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC----CCTTCCCTTSCCHHHHHHH---
T ss_pred             cCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccC----CCCCCcCCCCCcHHHHHHH---
Confidence            9999999999999877      78999999999999999999999999999999    5 69999999999999998   


Q ss_pred             CCcHHHHHHHHHHccCc
Q 015882          181 DSVSNEIGSILERAAAR  197 (399)
Q Consensus       181 ~~~~~~i~~~L~~~ga~  197 (399)
                       .++.+++++|+++||+
T Consensus       147 -~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          147 -YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             -TTCHHHHHHHHHTC--
T ss_pred             -cCCHHHHHHHHHhCCC
Confidence             8889999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=3e-30  Score=221.95  Aligned_cols=161  Identities=24%  Similarity=0.358  Sum_probs=149.7

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHH
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALI   97 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh   97 (399)
                      ......+.||||.|+..|+.+++++|+++|.++  +.+|..|.||||+|+..|+.+++++| +.+.+++..|..|+||||
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLR   85 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            445667899999999999999999999999999  88999999999999999999999999 999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882           98 LAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus        98 ~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      .|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|++.|+    +++.+|..|+||+|+|+.
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A~~  155 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGAD------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA----DVNAQDKFGKTAFDISID  155 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHH
Confidence            99999999999999999877      78899999999999999999999999999999    999999999999999998


Q ss_pred             cCCCCcHHHHHHHHHHcc
Q 015882          178 NSQDSVSNEIGSILERAA  195 (399)
Q Consensus       178 ~~~~~~~~~i~~~L~~~g  195 (399)
                          .++.+++++|++.|
T Consensus       156 ----~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          156 ----NGNEDLAEILQKLN  169 (169)
T ss_dssp             ----TTCHHHHHHHHTC-
T ss_pred             ----hCCHHHHHHHHHcC
Confidence                78899999999876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.4e-30  Score=234.48  Aligned_cols=168  Identities=22%  Similarity=0.210  Sum_probs=156.5

Q ss_pred             ccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCC------ccccc
Q 015882           17 KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSES------LAKLT   89 (399)
Q Consensus        17 l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~------~~~~d   89 (399)
                      .++.+|..|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| ..+..      ++..|
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  114 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS--CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence            46788999999999999999999999999999999  88999999999999999999999999 65543      57778


Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCC-CCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCC
Q 015882           90 SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK-EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQG  168 (399)
Q Consensus        90 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~-~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g  168 (399)
                      ..|+||||+|+..|+.+++++|++.|++      ++.+|. .|+||||+|+..|+.+++++|++.|+    +++.+|..|
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g  184 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQG  184 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC----CSCCCCTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCcccCCC
Confidence            8999999999999999999999999887      788887 99999999999999999999999999    999999999


Q ss_pred             CCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          169 QTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       169 ~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +||+|+|+.    .++.+++++|+++|++...
T Consensus       185 ~tpl~~A~~----~~~~~~~~~Ll~~ga~~~~  212 (236)
T 1ikn_D          185 YSPYQLTWG----RPSTRIQQQLGQLTLENLQ  212 (236)
T ss_dssp             CCGGGGCTT----SSCHHHHHHHHTTSCGGGS
T ss_pred             CCHHHHHHc----cCchHHHHHHHHcchhhhh
Confidence            999999998    7889999999999997763

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1.4e-29  Score=229.18  Aligned_cols=179  Identities=19%  Similarity=0.214  Sum_probs=163.5

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+...  .++..|.+|.||||+|+..|+.+++++|+++|.++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        25 ~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  100 (237)
T 3b7b_A           25 DICHMLVQAGA--NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV--DPKDAEGSTCLHLAAKKGHYEVVQYLLSNG  100 (237)
T ss_dssp             HHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC--CCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHHcCC--CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence            67777776643  36778889999999999999999999999999998  78999999999999999999999999 655


Q ss_pred             -CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccc
Q 015882           83 -ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQI  161 (399)
Q Consensus        83 -~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~  161 (399)
                       .+++..|..|+||||.|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|++.|+    ++
T Consensus       101 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~  170 (237)
T 3b7b_A          101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD------INIRDNEENICLHWAAFSGCVDIAEILLAAKC----DL  170 (237)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC----CT
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC----CC
Confidence             78899999999999999999999999999998877      78899999999999999999999999999999    99


Q ss_pred             cccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          162 DSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       162 ~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +.+|..|+||||+|+.    .++.+++++|+++|++...
T Consensus       171 ~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          171 HAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             TCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTTC
T ss_pred             CCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCCCc
Confidence            9999999999999998    7889999999999988764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=8.9e-30  Score=230.66  Aligned_cols=182  Identities=20%  Similarity=0.192  Sum_probs=162.3

Q ss_pred             HHHHHHHhc--CCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-h
Q 015882            4 ELIELAKKD--KVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-A   80 (399)
Q Consensus         4 e~i~~l~~~--~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~   80 (399)
                      ++++.+.+.  +.+..++..|.+|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +
T Consensus        23 ~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  100 (241)
T 1k1a_A           23 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAAHLACEHRSPTCLRALLD  100 (241)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            345555431  123446888999999999999999999999999999999  88999999999999999999999999 6


Q ss_pred             ccC----CccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccC-CCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           81 CSE----SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD-KEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        81 ~~~----~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d-~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      .+.    +++..|..|+||||.|+..|+.+++++|++.|.+      ++.+| ..|+||||+|++.|+.+++++|++.|+
T Consensus       101 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  174 (241)
T 1k1a_A          101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA  174 (241)
T ss_dssp             HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC------cccccccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            655    7888899999999999999999999999999877      67777 789999999999999999999999999


Q ss_pred             CCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          156 SDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       156 ~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                          +++.+|.+|+||||+|+.    .++.+++++|+++|++.+..
T Consensus       175 ----~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~~  212 (241)
T 1k1a_A          175 ----NVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSSLK  212 (241)
T ss_dssp             ----CTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTCC
T ss_pred             ----CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCCCCc
Confidence                999999999999999998    78899999999999987653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.6e-29  Score=241.34  Aligned_cols=185  Identities=15%  Similarity=0.143  Sum_probs=163.4

Q ss_pred             HHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccC
Q 015882            5 LIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSE   83 (399)
Q Consensus         5 ~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~   83 (399)
                      .++.+... .+...+.+|..|+||||+|+..|+.+++++|+++|+++  +.+|.+|.||||+|+..|+.+++++| +++.
T Consensus        39 ~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~  115 (351)
T 3utm_A           39 KLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPLHNACSYGHYEVTELLLKHGA  115 (351)
T ss_dssp             HHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHCCCHHHHHHHHHCCC
Confidence            34444433 24456788999999999999999999999999999999  88999999999999999999999999 9999


Q ss_pred             CccccccCCchHHHHHHHcCCHHHHHHHHHhhhccc--------------------------------------------
Q 015882           84 SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN--------------------------------------------  119 (399)
Q Consensus        84 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--------------------------------------------  119 (399)
                      +++..|..|+||||+|+..|+.+++++|++.|++++                                            
T Consensus       116 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (351)
T 3utm_A          116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVK  195 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHH
Confidence            999999999999999999999999999999876532                                            


Q ss_pred             ----------------------------------------ccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcc
Q 015882          120 ----------------------------------------REHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDII  159 (399)
Q Consensus       120 ----------------------------------------~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v  159 (399)
                                                              ....+|.+|.+|+||||+|++.|+.+++++|++.|+    
T Consensus       196 ~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----  271 (351)
T 3utm_A          196 KTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA----  271 (351)
T ss_dssp             HHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----
T ss_pred             HHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----
Confidence                                                    112467788999999999999999999999999999    


Q ss_pred             cccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          160 QIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       160 ~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +++.+|..|+||||+|+.    .++.+++++|+++|++.+.
T Consensus       272 ~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          272 KMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCCC
Confidence            999999999999999998    7889999999999998764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=7.4e-30  Score=234.00  Aligned_cols=175  Identities=18%  Similarity=0.199  Sum_probs=162.0

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHh-h
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDP-QTGSVVEDNGLTTPLHRAAVNGDTGMIREI-A   80 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~-~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~   80 (399)
                      .++++.|.+..  ..++.+|..|+||||+|+..|+.+++++|+++++ ++  +.+|.+|.||||+|+..|+.+++++| +
T Consensus        70 ~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  145 (253)
T 1yyh_A           70 SDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLILAARLAVEGMLEDLIN  145 (253)
T ss_dssp             HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT--TCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence            36788887764  3367889999999999999999999999999988 66  88999999999999999999999999 9


Q ss_pred             ccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccc
Q 015882           81 CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQ  160 (399)
Q Consensus        81 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~  160 (399)
                      .+.+++.+|.+|+||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|++.|+.+++++|++.|+    +
T Consensus       146 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~  215 (253)
T 1yyh_A          146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPLFLAAREGSYETAKVLLDHFA----N  215 (253)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----C
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC----C
Confidence            9999999999999999999999999999999999887      78899999999999999999999999999999    9


Q ss_pred             ccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHcc
Q 015882          161 IDSKNNQGQTALDICKANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       161 ~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~g  195 (399)
                      ++.+|..|+||+|+|++    .++.+++++|....
T Consensus       216 ~~~~d~~g~tpl~~A~~----~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          216 RDITDHMDRLPRDIAQE----RMHHDIVRLLDLEH  246 (253)
T ss_dssp             TTCCCTTCCCHHHHHHH----TTCHHHHHHHHC--
T ss_pred             ccccccCCCCHHHHHHH----cCCHHHHHHHHHHh
Confidence            99999999999999999    88999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=4.3e-30  Score=238.10  Aligned_cols=175  Identities=19%  Similarity=0.272  Sum_probs=158.2

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchH
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTG-SVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETA   95 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~-~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~   95 (399)
                      .+.+|.+|+||||+|+..|+.+++++|++++++.. .+.+|..|.||||+|+..|+.+++++| +++++++.+|..|+||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            46789999999999999999999999999988821 178999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhccc-----------------------------------------ccccccccCCCCCcH
Q 015882           96 LILAVKSSQIDAFKILVEETKRHN-----------------------------------------REHLFNATDKEGNSL  134 (399)
Q Consensus        96 Lh~A~~~g~~~~v~~Ll~~~~~~~-----------------------------------------~~~lin~~d~~G~T~  134 (399)
                      ||+|+..|+.+++++|++.+++..                                         ....++.+|..|+||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            999999999999999998765421                                         123478899999999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCcccccccccC-CCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          135 LHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQ-GQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       135 LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~-g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      ||+|+..|+.+++++|++.|+    +++.++.. |+||||+|+.    .++.+++++|+++|++.+.
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~  220 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGA----DLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPTA  220 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            999999999999999999999    99999865 9999999998    7889999999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.2e-30  Score=239.45  Aligned_cols=181  Identities=21%  Similarity=0.227  Sum_probs=159.8

Q ss_pred             hHHHHHHHhcCCcccccc----ccCCCChHhhHHHhc---CCHHHHHHHhhcCCCCCC---------ccCCCCCCcHHHH
Q 015882            3 NELIELAKKDKVQEKDST----QNQNGCTSMHRAPVE---GDGEMIHCLGKLDPQTGS---------VVEDNGLTTPLHR   66 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~----~d~~G~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~---------~~~d~~g~tpLh~   66 (399)
                      +++++.+.+....  ++.    +|.+|+||||+|+..   |+.+++++|+++|++...         ..+|..|.||||+
T Consensus        19 ~~ll~~l~~~g~~--i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~   96 (256)
T 2etb_A           19 TGLLEYLRWNSKY--LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI   96 (256)
T ss_dssp             TTHHHHHHHHTCC--TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHH
T ss_pred             HHHHHHHHHcCCC--cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHH
Confidence            3466766655432  444    799999999999999   999999999999877620         1234789999999


Q ss_pred             HHHcCCHHHHHHh-hccCCccccccC-------------CchHHHHHHHcCCHHHHHHHHH---hhhcccccccccccCC
Q 015882           67 AAVNGDTGMIREI-ACSESLAKLTSD-------------AETALILAVKSSQIDAFKILVE---ETKRHNREHLFNATDK  129 (399)
Q Consensus        67 Aa~~g~~~iv~~L-~~~~~~~~~d~~-------------g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~lin~~d~  129 (399)
                      |+..|+.+++++| +.+++++.+|..             |+||||+|+..|+.+++++|++   .|++      +|.+|.
T Consensus        97 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~------~n~~d~  170 (256)
T 2etb_A           97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS------LEATDS  170 (256)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------cCccCC
Confidence            9999999999999 999999999886             9999999999999999999999   7777      889999


Q ss_pred             CCCcHHHHHHH--cCcHH-------HHHHHHhCCCCCcccc-------cccccCCCCHHHHHHhcCCCCcHHHHHHHHHH
Q 015882          130 EGNSLLHLAAL--NKLIV-------IVNLLLEGSSSDIIQI-------DSKNNQGQTALDICKANSQDSVSNEIGSILER  193 (399)
Q Consensus       130 ~G~T~LHlA~~--~~~~~-------iv~~Ll~~g~~~~v~~-------~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~  193 (399)
                      +|+||||+|+.  .++.+       ++++|++.|+    ++       +.+|.+|+||||+|+.    .++.+++++|++
T Consensus       171 ~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga----~~~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~  242 (256)
T 2etb_A          171 LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA----RLCPTVQLEEISNHQGLTPLKLAAK----EGKIEIFRHILQ  242 (256)
T ss_dssp             TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH----HHSTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC----CcccccccccccCCCCCCHHHHHHH----hCCHHHHHHHHh
Confidence            99999999999  78888       9999999999    88       9999999999999999    889999999999


Q ss_pred             ccCccC
Q 015882          194 AAARKQ  199 (399)
Q Consensus       194 ~ga~~~  199 (399)
                      +|++..
T Consensus       243 ~g~~~~  248 (256)
T 2etb_A          243 REFSGA  248 (256)
T ss_dssp             HHHHHH
T ss_pred             CCCCCC
Confidence            997654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5.6e-30  Score=220.55  Aligned_cols=161  Identities=20%  Similarity=0.228  Sum_probs=151.3

Q ss_pred             CChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcC
Q 015882           25 GCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSS  103 (399)
Q Consensus        25 G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g  103 (399)
                      +.||||.|+..|+.++++.|++.+++.. +.+|..|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLV-NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGG-GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccc-cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence            5789999999999999999999998843 88999999999999999999999999 999999999999999999999999


Q ss_pred             CHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCc
Q 015882          104 QIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSV  183 (399)
Q Consensus       104 ~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~  183 (399)
                      +.+++++|++.|.+      ++.+|.+|+||||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|+.    .+
T Consensus        81 ~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~----~~  146 (172)
T 3v30_A           81 YTDIVGLLLERDVD------INIYDWNGGTPLLYAVRGNHVKCVEALLARGA----DLTTEADSGYTPMDLAVA----LG  146 (172)
T ss_dssp             CHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----HT
T ss_pred             CHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHHHH----hC
Confidence            99999999998877      88999999999999999999999999999999    999999999999999998    78


Q ss_pred             HHHHHHHHHHccCccCC
Q 015882          184 SNEIGSILERAAARKQT  200 (399)
Q Consensus       184 ~~~i~~~L~~~ga~~~~  200 (399)
                      +.+++++|+++|++...
T Consensus       147 ~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A          147 YRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             CHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHHhc
Confidence            89999999999987664

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.4e-29  Score=219.72  Aligned_cols=165  Identities=18%  Similarity=0.204  Sum_probs=152.0

Q ss_pred             CCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHH
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVK  101 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~  101 (399)
                      .++.+|||.|+..|+.++++.|++.++... +.+|..|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccc-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            468899999999999999999999855433 88999999999999999999999999 9999999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCC
Q 015882          102 SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQD  181 (399)
Q Consensus       102 ~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~  181 (399)
                      .|+.+++++|++.|++      +|.+|.+|+||||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|+.    
T Consensus        82 ~~~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~----  147 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD------INAVNEHGNVPLHYACFWGQDQVAEDLVANGA----LVSICNKYGEMPVDKAKA----  147 (179)
T ss_dssp             TTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSSBCCTTSCCGGGGSCH----
T ss_pred             cCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CcchhccCCCCcHHHHHH----
Confidence            9999999999999887      88999999999999999999999999999999    999999999999999998    


Q ss_pred             CcHHHHHHHHHHccCccCCCC
Q 015882          182 SVSNEIGSILERAAARKQTAP  202 (399)
Q Consensus       182 ~~~~~i~~~L~~~ga~~~~~~  202 (399)
                      .++.+++++|+++|++.+..+
T Consensus       148 ~~~~~~~~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          148 PLRELLRERAEKMGQNLNRIP  168 (179)
T ss_dssp             HHHHHHHHHHHHTTCCCSCBC
T ss_pred             HHHHHHHHHHHHhhcCcccCC
Confidence            788999999999999887643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=5.4e-30  Score=219.13  Aligned_cols=160  Identities=23%  Similarity=0.229  Sum_probs=146.0

Q ss_pred             ccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHH
Q 015882           21 QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILA   99 (399)
Q Consensus        21 ~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A   99 (399)
                      .|.+|.||||.|+..|+.++++.|++.++... +..+..|.||||+|+..|+.+++++| +.+.+++.+|.+|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCc-cccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            57789999999999999999999999655433 77888999999999999999999999 99999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcC
Q 015882          100 VKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANS  179 (399)
Q Consensus       100 ~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~  179 (399)
                      +..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|..  
T Consensus        83 ~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~a~~--  150 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAV------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA----DPTKKNRDGNTPLDLVKD--  150 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTGGGSCT--
T ss_pred             HHcCcHHHHHHHHhCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCChhHhHhc--
Confidence            999999999999999887      78899999999999999999999999999999    999999999999999763  


Q ss_pred             CCCcHHHHHHHHHHccC
Q 015882          180 QDSVSNEIGSILERAAA  196 (399)
Q Consensus       180 ~~~~~~~i~~~L~~~ga  196 (399)
                         ++.+++++|++.|+
T Consensus       151 ---~~~~i~~~L~~~gA  164 (165)
T 3twr_A          151 ---GDTDIQDLLRGDAA  164 (165)
T ss_dssp             ---TCHHHHHHHHTC--
T ss_pred             ---CChHHHHHHhhccc
Confidence               56699999999886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=3.1e-30  Score=233.74  Aligned_cols=173  Identities=18%  Similarity=0.264  Sum_probs=155.4

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCC----CCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCc
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDP----QTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAE   93 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~----~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~   93 (399)
                      +.+|.+|+||||+|+..|+.++++.|++.+.    ++  +.+|..|.||||+|+..|+.+++++| +.+++++.+|..|+
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   79 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL--NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN   79 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCC--CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHh--hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            3578899999999999999999999999876    45  78999999999999999999999999 99999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccccccc-CCCCHH
Q 015882           94 TALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNN-QGQTAL  172 (399)
Q Consensus        94 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~-~g~Tpl  172 (399)
                      ||||+|+..|+.+++++|++.++++.....++..|..|+||||+|+..|+.+++++|++.|+    +++.+|. .|.|||
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~g~tpL  155 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA----DVNAQEPCNGRTAL  155 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCCHH
Confidence            99999999999999999999988765566688999999999999999999999999999999    9999998 999999


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          173 DICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       173 ~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      |+|+.    .++.+++++|+++|++.+..
T Consensus       156 ~~A~~----~~~~~~v~~Ll~~ga~~~~~  180 (236)
T 1ikn_D          156 HLAVD----LQNPDLVSLLLKCGADVNRV  180 (236)
T ss_dssp             HHHHH----TTCHHHHHHHHTTTCCSCCC
T ss_pred             HHHHH----cCCHHHHHHHHHcCCCCCcc
Confidence            99998    78899999999999987653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3.8e-30  Score=239.39  Aligned_cols=165  Identities=23%  Similarity=0.259  Sum_probs=154.9

Q ss_pred             cccccccCCCChHhhHHHhcCCHHHHHHHhhcCC-CCCCccCCCCCCcHHHHHH-----HcCCHHHHHHh-hccCCcccc
Q 015882           16 EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDP-QTGSVVEDNGLTTPLHRAA-----VNGDTGMIREI-ACSESLAKL   88 (399)
Q Consensus        16 ~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~-~~~~~~~d~~g~tpLh~Aa-----~~g~~~iv~~L-~~~~~~~~~   88 (399)
                      ..++.+|.+|+||||+|+..|+.+++++|++.|+ ++  +..|..|.||||+|+     ..++.++++.| ..+...+..
T Consensus       102 ~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~  179 (276)
T 4hbd_A          102 YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV--DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKA  179 (276)
T ss_dssp             HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT--TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCC
T ss_pred             hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC--CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcccc
Confidence            3467889999999999999999999999999998 76  899999999999999     67889999999 888888889


Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCcccccccccC
Q 015882           89 TSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQ  167 (399)
Q Consensus        89 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~-~g~~~~v~~~~~n~~  167 (399)
                      |..|+||||+|+.+|+.+++++|++.|++      +|.+|.+|+||||+|+..|+.+++++|++ .|+    +++.+|.+
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad------~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~  249 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEAD------VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC----DISLTDRD  249 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTC----CTTCCCTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC----CCcCcCCC
Confidence            99999999999999999999999999887      88999999999999999999999999999 788    99999999


Q ss_pred             CCCHHHHHHhcCCCCcHHHHHHHHHHccC
Q 015882          168 GQTALDICKANSQDSVSNEIGSILERAAA  196 (399)
Q Consensus       168 g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga  196 (399)
                      |+||||+|+.    .++.+++++|++++.
T Consensus       250 g~TpL~~A~~----~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          250 GSTALMVALD----AGQSEIASMLYSRMN  274 (276)
T ss_dssp             SCCHHHHHHH----HTCHHHHHHHHHHCC
T ss_pred             CCCHHHHHHH----cCCHHHHHHHHhccC
Confidence            9999999998    788999999998763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=5e-29  Score=232.82  Aligned_cols=177  Identities=18%  Similarity=0.170  Sum_probs=118.4

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.|.+...  .++.+|.+|+||||+|+..|+.+++++|+++|+++  +.+|.+|.||||+|+..|+.+++++| +.+
T Consensus        73 ~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  148 (285)
T 3d9h_A           73 LSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV--NGVTADWHTPLFNACVSGSWDCVNLLLQHG  148 (285)
T ss_dssp             HHHHHHHHTTC--CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS--SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCC--CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCHHHHHHHHHHCC
Confidence            44555544332  24555566666666666666666666666666665  55666666666666666666666666 555


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      .+++.. .+|.||||+|+..|+.+++++|++.+.+      ++.+|.+|+||||+|+..|+.+++++|++.|+    +++
T Consensus       149 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~  217 (285)
T 3d9h_A          149 ASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGN------IDHKISHLGTPLYLACENQQRACVKKLLESGA----DVN  217 (285)
T ss_dssp             CCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCC------TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC----CTT
T ss_pred             CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC----CCC
Confidence            555432 3366666666666666666666665554      67788888888888888888888888888887    676


Q ss_pred             ccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          163 SKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       163 ~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      . |..|+||||+|+.    .++.+++++|+++|++.+.
T Consensus       218 ~-~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~  250 (285)
T 3d9h_A          218 Q-GKGQDSPLHAVVR----TASEELACLLMDFGADTQA  250 (285)
T ss_dssp             C-CBTTBCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             C-CCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            3 7788888888887    6777888888888877654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=235.28  Aligned_cols=182  Identities=21%  Similarity=0.246  Sum_probs=140.0

Q ss_pred             HHHHHHHhcCCc------cccccccCCCChHhhHHHhcCCH-HHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 015882            4 ELIELAKKDKVQ------EKDSTQNQNGCTSMHRAPVEGDG-EMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMI   76 (399)
Q Consensus         4 e~i~~l~~~~~~------~l~~~~d~~G~TpLh~Aa~~G~~-~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv   76 (399)
                      ++++.|.+....      ...+..|..|.||||.|+..++. ++++.|++.|.++  +.+|.+|+||||+|+..|+.+++
T Consensus        25 ~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv--n~~d~~G~TpLh~A~~~g~~~~v  102 (269)
T 4b93_B           25 EMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV--NVTSQDGSSPLHVAALHGRADLI  102 (269)
T ss_dssp             HHHHHHHTCC----------------------------------------CCCCT--TCCCTTSCCHHHHHHHTTCTTHH
T ss_pred             HHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCcHHHH
Confidence            567777654332      23566788999999999998876 4889999999999  89999999999999999999999


Q ss_pred             HHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           77 REI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        77 ~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      ++| ..+++++..+.+|.||+|.|+..++.+++++|++.|++      +|.+|.+|+||||+|+..|+.+++++|++.|+
T Consensus       103 ~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~------~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  176 (269)
T 4b93_B          103 PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK------PNKKDLSGNTPLIYACSGGHHELVALLLQHGA  176 (269)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTC
T ss_pred             HHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            999 99999999999999999999999999999999999887      78999999999999999999999999999999


Q ss_pred             CCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          156 SDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       156 ~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                          ++|.+|..|.||||+|+.    .++.+++++|+++|++.+..
T Consensus       177 ----dvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          177 ----SINASNNKGNTALHEAVI----EKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             ----CTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCSCCC
T ss_pred             ----CCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCCCCc
Confidence                999999999999999999    88899999999999987753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=3e-29  Score=216.09  Aligned_cols=146  Identities=22%  Similarity=0.320  Sum_probs=132.9

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.|.+...  .++.+|.+|+||||+|+..|+.++++.|++.|+++  +.+|.+|+||||+|+..|+.+++++| +.+
T Consensus        18 ~~v~~Ll~~Ga--dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~--~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g   93 (169)
T 4gpm_A           18 DRVKDLIENGA--DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV--NAKDSDGRTPLHHAAENGHKEVVKLLISKG   93 (169)
T ss_dssp             HHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch--hhhccCCCCHHHHHHHcCCHHHHHHHHHCc
Confidence            67788876653  37889999999999999999999999999999999  89999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      ++++.+|.+|+||||+|+++|+.+++++|++.|++      ++.+|.+|+||||+|++.|+.+++++|+++|+    +++
T Consensus        94 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA----~ie  163 (169)
T 4gpm_A           94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG----WLE  163 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---------
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CcC
Confidence            99999999999999999999999999999999887      78999999999999999999999999999999    665


Q ss_pred             c
Q 015882          163 S  163 (399)
Q Consensus       163 ~  163 (399)
                      .
T Consensus       164 ~  164 (169)
T 4gpm_A          164 H  164 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=8.5e-30  Score=236.05  Aligned_cols=168  Identities=18%  Similarity=0.196  Sum_probs=148.4

Q ss_pred             cccCCCChHhhHHHhc---CCHHHHHHHhhcCCCCC---------CccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCcc
Q 015882           20 TQNQNGCTSMHRAPVE---GDGEMIHCLGKLDPQTG---------SVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLA   86 (399)
Q Consensus        20 ~~d~~G~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~---------~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~   86 (399)
                      ..|..|+||||+|+..   |+.+++++|+++|++..         ...+|..|.||||+|+..|+.+++++| +.+++++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ  128 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            4588999999999987   99999999999875431         023677999999999999999999999 8899999


Q ss_pred             cccc--------------CCchHHHHHHHcCCHHHHHHHHH---hhhcccccccccccCCCCCcHHHHHHHcCc------
Q 015882           87 KLTS--------------DAETALILAVKSSQIDAFKILVE---ETKRHNREHLFNATDKEGNSLLHLAALNKL------  143 (399)
Q Consensus        87 ~~d~--------------~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~lin~~d~~G~T~LHlA~~~~~------  143 (399)
                      .++.              .|+||||+|+..|+.+++++|++   .|++      +|.+|.+|+||||+|+..++      
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad------~~~~d~~g~tpLh~A~~~~~~~~~~~  202 (273)
T 2pnn_A          129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD------ISARDSVGNTVLHALVEVADNTVDNT  202 (273)
T ss_dssp             CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSCHHHH
T ss_pred             ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC------ceeeCCCCCcHHHHHHHccCcchhHH
Confidence            9987              79999999999999999999999   7776      88999999999999999888      


Q ss_pred             ---HHHHHHHHhCCCCCccccc-------ccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccC-ccCCC
Q 015882          144 ---IVIVNLLLEGSSSDIIQID-------SKNNQGQTALDICKANSQDSVSNEIGSILERAAA-RKQTA  201 (399)
Q Consensus       144 ---~~iv~~Ll~~g~~~~v~~~-------~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga-~~~~~  201 (399)
                         .+++++|++.|+    +++       .+|.+|+||||+|+.    .++.+++++|+++|+ ++...
T Consensus       203 ~~~~~~v~~Ll~~ga----~~n~~~~~~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          203 KFVTSMYNEILILGA----KLHPTLKLEEITNRKGLTPLALAAS----SGKIGVLAYILQREIHEPECR  263 (273)
T ss_dssp             HHHHHHHHHHHHHHH----HHCTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHhhh----hcccccccccccCCCCCCHHHHHHH----hChHHHHHHHHHCCCCCchhh
Confidence               799999999998    776       599999999999999    889999999999999 44443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=7.6e-29  Score=224.50  Aligned_cols=171  Identities=23%  Similarity=0.273  Sum_probs=154.7

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhh----cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCC
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGK----LDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDA   92 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~----~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g   92 (399)
                      ++.+|.+|+||||+|+..|+.++++.|++    .+.++  +.+|..|.||||+|+..|+.+++++| +.+.+++.+|..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   79 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG   79 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            56789999999999999999999999997    67787  88999999999999999999999999 9999999999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccc-cCCCCH
Q 015882           93 ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKN-NQGQTA  171 (399)
Q Consensus        93 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n-~~g~Tp  171 (399)
                      +||||+|+..|+.+++++|++.++.  ....++.+|..|+||||+|+..++.+++++|++.|+    +++..+ ..|.||
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~~g~t~  153 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAP--GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA----DIDAVDIKSGRSP  153 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCT--TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC--ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC----CcccccccCCCcH
Confidence            9999999999999999999999763  223478899999999999999999999999999999    899998 889999


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          172 LDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       172 l~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      ||+|+.    .++.+++++|+++|++.+.
T Consensus       154 L~~A~~----~~~~~~v~~Ll~~g~~~~~  178 (241)
T 1k1a_A          154 LIHAVE----NNSLSMVQLLLQHGANVNA  178 (241)
T ss_dssp             HHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            999998    7889999999999988663

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.3e-29  Score=211.70  Aligned_cols=150  Identities=21%  Similarity=0.219  Sum_probs=142.7

Q ss_pred             CChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcC
Q 015882           25 GCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSS  103 (399)
Q Consensus        25 G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g  103 (399)
                      +.||||.|+..|+.++++.|++.+++.  + .|..|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC--C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            578999999999999999999999987  4 688999999999999999999999 999999999999999999999999


Q ss_pred             CHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCc
Q 015882          104 QIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSV  183 (399)
Q Consensus       104 ~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~  183 (399)
                      +.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|+.    .+
T Consensus        79 ~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~----~~  144 (153)
T 1awc_B           79 HANIVEVLLKHGAD------VNAKDMLKMTALHWATEHNHQEVVELLIKYGA----DVHTQSKFCKTAFDISID----NG  144 (153)
T ss_dssp             CHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TT
T ss_pred             hHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHHHH----cC
Confidence            99999999999877      78999999999999999999999999999999    999999999999999998    78


Q ss_pred             HHHHHHHH
Q 015882          184 SNEIGSIL  191 (399)
Q Consensus       184 ~~~i~~~L  191 (399)
                      +.+++++|
T Consensus       145 ~~~i~~~L  152 (153)
T 1awc_B          145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            88998887

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=4.4e-29  Score=225.24  Aligned_cols=166  Identities=19%  Similarity=0.141  Sum_probs=145.8

Q ss_pred             CCChHhhHHHhcCCHHHHHHHhhc-CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCc-----cccccCCchHH
Q 015882           24 NGCTSMHRAPVEGDGEMIHCLGKL-DPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESL-----AKLTSDAETAL   96 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~-----~~~d~~g~t~L   96 (399)
                      .|+||||+|+..|+.++++.|++. +.++  +.+|.+|.||||+|+..|+.+++++| +.+.++     +..|.+|+|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV--HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc--ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            589999999999999999999998 8888  88999999999999999999999999 766665     66778999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhccccc-------ccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCC
Q 015882           97 ILAVKSSQIDAFKILVEETKRHNRE-------HLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQ  169 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~~~~~~-------~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~  169 (399)
                      |+|+..|+.+++++|++.|++.+..       ...+..|.+|+||||+|+..|+.+++++|++.|+    +++.+|.+|+
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~  155 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA----DIRAQDSLGN  155 (232)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCC
Confidence            9999999999999999998873311       0122234589999999999999999999999999    9999999999


Q ss_pred             CHHHHHHhcCCCCcHHHHH----HHHHHccCccC
Q 015882          170 TALDICKANSQDSVSNEIG----SILERAAARKQ  199 (399)
Q Consensus       170 Tpl~~a~~~~~~~~~~~i~----~~L~~~ga~~~  199 (399)
                      ||||+|+.    .++.+++    ++|+++|++..
T Consensus       156 t~L~~A~~----~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          156 TVLHILIL----QPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             CHHHHHHT----CSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CHHHHHHH----cCChHHHHHHHHHHHhcCCchh
Confidence            99999998    5555555    99999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=7.5e-29  Score=231.62  Aligned_cols=166  Identities=19%  Similarity=0.186  Sum_probs=155.9

Q ss_pred             ccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchH
Q 015882           17 KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETA   95 (399)
Q Consensus        17 l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~   95 (399)
                      ....+|.+|+||||+|+..|+.++++.|++.|+++  +.+|.+|.||||+|+..|+.+++++| +.+++++.+|.+|+||
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~  128 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV--NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP  128 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS--CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            35678999999999999999999999999999998  89999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHH
Q 015882           96 LILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC  175 (399)
Q Consensus        96 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a  175 (399)
                      ||+|+..|+.+++++|++.+++      ++. +.+|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~------~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~L~~A  197 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGAS------VQP-ESDLASPIHEAARRGHVECVNSLIAYGG----NIDHKISHLGTPLYLA  197 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC------SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTC----CTTCCBTTTBCHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHCCCC------CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHH
Confidence            9999999999999999999877      333 4459999999999999999999999999    9999999999999999


Q ss_pred             HhcCCCCcHHHHHHHHHHccCccC
Q 015882          176 KANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       176 ~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      +.    .++.+++++|++.|++.+
T Consensus       198 ~~----~~~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          198 CE----NQQRACVKKLLESGADVN  217 (285)
T ss_dssp             HH----TTCHHHHHHHHHTTCCTT
T ss_pred             HH----cCcHHHHHHHHHCCCCCC
Confidence            98    788999999999998776

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=8.1e-29  Score=224.08  Aligned_cols=168  Identities=22%  Similarity=0.251  Sum_probs=158.0

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHH
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETAL   96 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~L   96 (399)
                      .+.+|.+|.||||+|+..|+.+++++|+++|.++  +..+.+|.||||+|+..|+.+++++| +.+.+++.++..|.|||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc--CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            4678899999999999999999999999999999  88999999999999999999999999 99999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHH
Q 015882           97 ILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK  176 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~  176 (399)
                      |.|+..|+.+++++|++.+.     ..++.+|..|.||||+|+..++.+++++|++.|+    +++.+|..|.||+|+|+
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~  152 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQ-----MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS----DINIRDNEENICLHWAA  152 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTC-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCC-----CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCccCCCCCCHHHHHH
Confidence            99999999999999999862     2278899999999999999999999999999999    89999999999999999


Q ss_pred             hcCCCCcHHHHHHHHHHccCccCC
Q 015882          177 ANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       177 ~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      .    .++.+++++|+++|++.+.
T Consensus       153 ~----~~~~~~~~~Ll~~g~~~~~  172 (237)
T 3b7b_A          153 F----SGCVDIAEILLAAKCDLHA  172 (237)
T ss_dssp             H----HCCHHHHHHHHTTTCCTTC
T ss_pred             H----CCCHHHHHHHHHcCCCCCC
Confidence            8    7789999999999987764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=6.1e-30  Score=235.07  Aligned_cols=186  Identities=19%  Similarity=0.145  Sum_probs=156.9

Q ss_pred             hHHHHHHHhcCCcccc--ccccCCCChHhhHHH---hcCCHHHHHHHhhcCCCC---------CCccCCCCCCcHHHHHH
Q 015882            3 NELIELAKKDKVQEKD--STQNQNGCTSMHRAP---VEGDGEMIHCLGKLDPQT---------GSVVEDNGLTTPLHRAA   68 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~--~~~d~~G~TpLh~Aa---~~G~~~~v~~Ll~~~~~~---------~~~~~d~~g~tpLh~Aa   68 (399)
                      +++++.+.+....-..  ...|.+|+||||+|+   ..|+.+++++|++.+++.         .....|..|.||||+|+
T Consensus        22 ~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  101 (260)
T 3jxi_A           22 EGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI  101 (260)
T ss_dssp             TTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH
T ss_pred             HHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH
Confidence            3456655544322111  123578999999999   779999999999987442         11455669999999999


Q ss_pred             HcCCHHHHHHh-hccCCccccc--------------cCCchHHHHHHHcCCHHHHHHHHH---hhhcccccccccccCCC
Q 015882           69 VNGDTGMIREI-ACSESLAKLT--------------SDAETALILAVKSSQIDAFKILVE---ETKRHNREHLFNATDKE  130 (399)
Q Consensus        69 ~~g~~~iv~~L-~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~lin~~d~~  130 (399)
                      ..|+.+++++| +.+++++.+|              ..|+||||+|+..|+.+++++|++   .|++      +|.+|.+
T Consensus       102 ~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~------~~~~d~~  175 (260)
T 3jxi_A          102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD------LRRQDSR  175 (260)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTT
T ss_pred             HcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------CcccCCC
Confidence            99999999999 9999999998              589999999999999999999999   7776      8899999


Q ss_pred             CCcHHHHHHHcCc---------HHHHHHHHhCCCCCcccc-------cccccCCCCHHHHHHhcCCCCcHHHHHHHHHHc
Q 015882          131 GNSLLHLAALNKL---------IVIVNLLLEGSSSDIIQI-------DSKNNQGQTALDICKANSQDSVSNEIGSILERA  194 (399)
Q Consensus       131 G~T~LHlA~~~~~---------~~iv~~Ll~~g~~~~v~~-------~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~  194 (399)
                      |+||||+|+..++         .+++++|++.|+    ++       +.+|.+|+||||+|+.    .++.+++++|+++
T Consensus       176 g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga----~~~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA----KLFPDTNLEALLNNDGLSPLMMAAK----TGKIGIFQHIIRR  247 (260)
T ss_dssp             SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH----HHCTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc----ccccccchhhcccCCCCCHHHHHHH----cCCHHHHHHHHHh
Confidence            9999999998887         799999999998    77       7899999999999999    8899999999999


Q ss_pred             cCccCCCC
Q 015882          195 AARKQTAP  202 (399)
Q Consensus       195 ga~~~~~~  202 (399)
                      |++....+
T Consensus       248 g~~~~~~~  255 (260)
T 3jxi_A          248 EIADAAAH  255 (260)
T ss_dssp             HHHHHC--
T ss_pred             CCCccccc
Confidence            98876543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=4.1e-29  Score=241.06  Aligned_cols=182  Identities=19%  Similarity=0.189  Sum_probs=141.2

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCcc----------------------------
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVV----------------------------   55 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~----------------------------   55 (399)
                      ++++.|.+...  .++.+|..|.||||+|+..|+.+++++|++++++.  +.                            
T Consensus        34 ~~v~~Ll~~g~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  109 (364)
T 3ljn_A           34 DEVRRLIETGV--SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH--SLWHGQKPIHLAVMANKTDLVVALVEGAKE  109 (364)
T ss_dssp             HHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC--CCBTTBCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc--cccCCCCHHHHHHHcCCHHHHHHHHHhccc
Confidence            56677765542  35777888888888888888888888888887765  22                            


Q ss_pred             ------------------------CCCCCCcHHHHHHHcC--CHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHH
Q 015882           56 ------------------------EDNGLTTPLHRAAVNG--DTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAF  108 (399)
Q Consensus        56 ------------------------~d~~g~tpLh~Aa~~g--~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  108 (399)
                                              +|.+|.||||+|+..|  +.+++++| +.+++++.+|..|+||||+|+.+|+.+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v  189 (364)
T 3ljn_A          110 RGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREAL  189 (364)
T ss_dssp             HTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence                                    5556777777777777  77777777 77777777777788888888888888888


Q ss_pred             HHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHH
Q 015882          109 KILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIG  188 (399)
Q Consensus       109 ~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~  188 (399)
                      ++|++.|++. ....+|.+|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+.    .++.+++
T Consensus       190 ~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~----~g~~~~v  260 (364)
T 3ljn_A          190 DLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI----DVNMEDNEHTVPLYLSVR----AAMVLLT  260 (364)
T ss_dssp             HHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHHHH----TCCHHHH
T ss_pred             HHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHH----hChHHHH
Confidence            8888776541 233367788888888888888888888888888888    888888888888888888    7788888


Q ss_pred             HHHHHccCcc
Q 015882          189 SILERAAARK  198 (399)
Q Consensus       189 ~~L~~~ga~~  198 (399)
                      ++|+++|++.
T Consensus       261 ~~Ll~~~~~~  270 (364)
T 3ljn_A          261 KELLQKTDVF  270 (364)
T ss_dssp             HHHHHHSCHH
T ss_pred             HHHHHcCCch
Confidence            8888888765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=2.4e-28  Score=226.05  Aligned_cols=185  Identities=22%  Similarity=0.264  Sum_probs=115.7

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      +++++|.+....  ++.+|.+|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        53 ~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  128 (285)
T 1wdy_A           53 DIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV--NECDFYGFTAFMEAAVYGKVKALKFLYKRG  128 (285)
T ss_dssp             HHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence            455555544322  3445556666666666666666666666666665  55566666666666666666666665 555


Q ss_pred             CCcccc----------ccCCchHHHHHHHcCCHHHHHHHHHh-hhccc-------------------------------c
Q 015882           83 ESLAKL----------TSDAETALILAVKSSQIDAFKILVEE-TKRHN-------------------------------R  120 (399)
Q Consensus        83 ~~~~~~----------d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~-------------------------------~  120 (399)
                      .+++..          +..|.||||.|+..|+.+++++|++. +.+++                               .
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~  208 (285)
T 1wdy_A          129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH  208 (285)
T ss_dssp             CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT
T ss_pred             CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc
Confidence            554444          44455555555555555555555554 32210                               0


Q ss_pred             cccccccCCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          121 EHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       121 ~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~-~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      ...++.+|.+|+||||+|++.|+.+++++|++ .|+    +++.+|.+|+||+|+|+.    .++.+++++|+++|++.+
T Consensus       209 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~----~~~~~~~~g~t~l~~A~~----~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC----CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSC
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC----CccccCCCCCcHHHHHHH----cCcHHHHHHHHHcCCCCC
Confidence            11266777778888888888888888888887 566    777788888888888877    667778888888887766


Q ss_pred             C
Q 015882          200 T  200 (399)
Q Consensus       200 ~  200 (399)
                      .
T Consensus       281 ~  281 (285)
T 1wdy_A          281 C  281 (285)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=9.7e-29  Score=231.43  Aligned_cols=169  Identities=17%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             CCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHH
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVK  101 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~  101 (399)
                      .+|.||||.||..|+.++++.|+++|+++  +.+|.+|.||||+|+..|+.+++++| +.+++++.+|..|+||||+|+.
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            34445555555555555555555555544  44455555555555555555555555 4455555555555555555555


Q ss_pred             cCCHHHHHHHHHhhhcccc------------------------------------------------------ccccccc
Q 015882          102 SSQIDAFKILVEETKRHNR------------------------------------------------------EHLFNAT  127 (399)
Q Consensus       102 ~g~~~~v~~Ll~~~~~~~~------------------------------------------------------~~lin~~  127 (399)
                      .|+.+++++|++.|++++.                                                      .......
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence            5555555555554443210                                                      0011235


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          128 DKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       128 d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      |..|.||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+.    .++.+++++|+++|++.+..
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQARY----DVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcCC----CCCCcCCCCCcHHHHHHh----cCCHHHHHHHHHcCCCCCCc
Confidence            6789999999999999999999999999    999999999999999999    78899999999999987654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=5.4e-29  Score=232.63  Aligned_cols=174  Identities=17%  Similarity=0.164  Sum_probs=149.3

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      +++.+++.+..    ++.+|.+|.||||+|+..|+.+++++|+++|+++  +.+  +|.||||+|+..|+.+++++| +.
T Consensus        13 ~~v~~lL~~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~--~g~t~L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A           13 KQLKSFLSSKD----TFKADVHGHSASYYAIADNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             HHHHHHHHSTT----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG--SCC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred             HHHHHHHHhCC----CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC--CCC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            56777776542    6788999999999999999999999999999888  555  489999999999999999999 88


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCC-CcHHHHHHHcCcHHHHHHHHhCCCCCccc
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG-NSLLHLAALNKLIVIVNLLLEGSSSDIIQ  160 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G-~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~  160 (399)
                      +++++.+|..|+||||+|+..|+.+++++|++.|++      ++.+|..| .||||+|+..|+.+++++|++.++    +
T Consensus        85 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~----~  154 (285)
T 3kea_A           85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP----S  154 (285)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG------GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC----T
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC------CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----c
Confidence            999999999999999999999999999999999887      77888888 799999999999999999998887    3


Q ss_pred             cccccc-CCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          161 IDSKNN-QGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       161 ~~~~n~-~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      .  .+. .|.||||+|+.    .++.+++++|+++|++.+.
T Consensus       155 ~--~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~n~  189 (285)
T 3kea_A          155 T--FDLAILLSCIHITIK----NGHVDMMILLLDYMTSTNT  189 (285)
T ss_dssp             T--CCCSTHHHHHHHHHH----TTCHHHHHHHHHHHHHTCT
T ss_pred             c--ccccCCccHHHHHHH----cChHHHHHHHHHcCCCCCc
Confidence            3  222 78888888888    7778888888888887664

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=9.3e-29  Score=209.26  Aligned_cols=152  Identities=20%  Similarity=0.234  Sum_probs=143.0

Q ss_pred             CChHhhHHHhcCCHHHHHHHhhc-CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHc
Q 015882           25 GCTSMHRAPVEGDGEMIHCLGKL-DPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKS  102 (399)
Q Consensus        25 G~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~  102 (399)
                      |.||||.|+..|+.++++.|++. +.++  +.+|..|.||||+ +..|+.+++++| +.+.+++.+|..|+||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHP--DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCT--TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCc--cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            67999999999999999999998 2255  8899999999999 999999999999 99999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCC
Q 015882          103 SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDS  182 (399)
Q Consensus       103 g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~  182 (399)
                      |+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|++. +    +++.+|.+|+||+|+|+.    .
T Consensus        79 ~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~----~~~~~~~~g~t~l~~A~~----~  143 (156)
T 1bd8_A           79 GFLDTLKVLVEHGAD------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S----DLHRRDARGLTPLELALQ----R  143 (156)
T ss_dssp             TCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S----CTTCCCTTSCCHHHHHHH----S
T ss_pred             CcHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c----CCCCcCCCCCCHHHHHHH----c
Confidence            999999999999877      789999999999999999999999999999 7    899999999999999998    8


Q ss_pred             cHHHHHHHHHHc
Q 015882          183 VSNEIGSILERA  194 (399)
Q Consensus       183 ~~~~i~~~L~~~  194 (399)
                      ++.+++++|+++
T Consensus       144 ~~~~~v~~Ll~~  155 (156)
T 1bd8_A          144 GAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTT
T ss_pred             CcHHHHHHHHhh
Confidence            889999999864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.4e-28  Score=220.99  Aligned_cols=172  Identities=18%  Similarity=0.118  Sum_probs=154.1

Q ss_pred             hHHHHHHHhcCCcccccc-ccCCCChHhhHHHhcCCHHHHHHHhhcC--CCCCCccCCCCCCcHHHHHHHcCCHHHHHHh
Q 015882            3 NELIELAKKDKVQEKDST-QNQNGCTSMHRAPVEGDGEMIHCLGKLD--PQTGSVVEDNGLTTPLHRAAVNGDTGMIREI   79 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~-~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~--~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   79 (399)
                      .++++.+.+...+..... .|..|.||||+|+..|+.+++++|++++  +++  +.+|..|.||||+|+..|+.+++++|
T Consensus        49 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~L  126 (228)
T 2dzn_A           49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL--NKITNQGVTCLHLAVGKKWFEVSQFL  126 (228)
T ss_dssp             HHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT--TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc--ccCCcCCCCHHHHHHHcCCHhHHHHH
Confidence            467888877654333444 8899999999999999999999999998  676  88999999999999999999999999


Q ss_pred             -hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhh-hcccccccccccCCCCCcHHHHHHHcCcHHHHHHHH-hCCCC
Q 015882           80 -ACSESLAKLTSDAETALILAVKSSQIDAFKILVEET-KRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLL-EGSSS  156 (399)
Q Consensus        80 -~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll-~~g~~  156 (399)
                       +.+.+++.+|..|+||||+|+..|+.+++++|++.| .+      ++.+|.+|+||||+|+..++.+++++|+ +.|+ 
T Consensus       127 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga-  199 (228)
T 2dzn_A          127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA-  199 (228)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC-
T ss_pred             HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-
Confidence             999999999999999999999999999999999987 55      8899999999999999999999999999 8899 


Q ss_pred             CcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHH
Q 015882          157 DIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILER  193 (399)
Q Consensus       157 ~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~  193 (399)
                         +++.+|.+|+||+|+|..    .   ++.++|++
T Consensus       200 ---~~~~~~~~g~t~l~~A~~----~---~~~~~l~~  226 (228)
T 2dzn_A          200 ---EYDLVDNKGAKAEDVALN----E---QVKKFFLN  226 (228)
T ss_dssp             ---CSCCBCTTSCBGGGGCSS----T---THHHHHHT
T ss_pred             ---CCCccCCCCCcHHHHHHH----H---HHHHHHHh
Confidence               999999999999999975    2   45555554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=5e-28  Score=239.07  Aligned_cols=179  Identities=21%  Similarity=0.257  Sum_probs=146.3

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      +++++|.+...  ..+..+.+|.||||+|+..|+.++++.|++.+.++  +.++..|.||||+|+..|+.+++++| ..+
T Consensus       193 ~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  268 (437)
T 1n11_A          193 DIVKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAAQEGHAEMVALLLSKQ  268 (437)
T ss_dssp             HHHHHHGGGTC--CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHhCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHCCCHHHHHHHHhcC
Confidence            45555554432  24455667777777777777777777777777777  67777788888888888888888888 777


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      .+++..|..|+||||+|++.|+.+++++|++.|.+      ++.+|..|+||||+|+..|+.+++++|++.|+    ++|
T Consensus       269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----d~n  338 (437)
T 1n11_A          269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVN  338 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC----CTT
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc------CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC----CCC
Confidence            77777788888888888888888888888887766      78899999999999999999999999999999    999


Q ss_pred             ccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          163 SKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       163 ~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      .+|..|+||||+|+.    .++.+++++|+++|++.+.
T Consensus       339 ~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          339 AKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             CCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCCC
Confidence            999999999999998    7889999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=4.8e-28  Score=218.58  Aligned_cols=184  Identities=20%  Similarity=0.251  Sum_probs=133.9

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+....  ++.+|.+|.||||+|+..|+.+++++|++++++.. ...+..|.||||+|+..|+.+++++| +.+
T Consensus        23 ~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g   99 (240)
T 3eu9_A           23 ERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKYG   99 (240)
T ss_dssp             HHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCCChhHHHHHcCCHHHHHHHHHcC
Confidence            567777665533  67778889999999999999999999999998884 45566699999999999999999999 888


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhccc----------------------------ccccccccCC-CCCc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN----------------------------REHLFNATDK-EGNS  133 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~----------------------------~~~lin~~d~-~G~T  133 (399)
                      .+++.+|..|+||||.|+..|+.+++++|++.+.+++                            ....++.++. .|+|
T Consensus       100 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t  179 (240)
T 3eu9_A          100 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT  179 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCC
T ss_pred             CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCc
Confidence            8899899999999999999999999999999876631                            1122344443 5556


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCcc
Q 015882          134 LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK  198 (399)
Q Consensus       134 ~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~  198 (399)
                      |||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|++    .++.+++++|++++++.
T Consensus       180 ~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A~~----~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          180 ALHWAVLAGNTTVISLLLEAGA----NVDAQNIKGESALDLAKQ----RKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTC----CTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHHC---
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHhhhcc
Confidence            6666666666666666666655    556666666666666665    55556666666655543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=4.1e-28  Score=231.55  Aligned_cols=188  Identities=22%  Similarity=0.248  Sum_probs=156.6

Q ss_pred             HHHHHHHhcCCcccccccc-CCCChHhhHHHhcCCHHHHHHHhhcCCCCC------------------------------
Q 015882            4 ELIELAKKDKVQEKDSTQN-QNGCTSMHRAPVEGDGEMIHCLGKLDPQTG------------------------------   52 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d-~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~------------------------------   52 (399)
                      |++++|.+....  ++.+| ..|+||||+|+..|+.++|++|+++|+++.                              
T Consensus        39 ~~V~~LL~~Gad--vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (337)
T 4g8k_A           39 DLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA  116 (337)
T ss_dssp             HHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHCCCC--CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccc
Confidence            678888765532  55555 459999999999999999999999887652                              


Q ss_pred             -CccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCcccc----------ccCCchHHHHHHHcCCHHHHHHHHHh-hhccc
Q 015882           53 -SVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKL----------TSDAETALILAVKSSQIDAFKILVEE-TKRHN  119 (399)
Q Consensus        53 -~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~----------d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~  119 (399)
                       .+.+|..|.||||+|+..|+.+++++| ..+++++..          +..|.||||+|+++|+.+++++|++. |++++
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n  196 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN  196 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT
T ss_pred             hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC
Confidence             145678899999999999999999999 777766543          45689999999999999999999964 54432


Q ss_pred             -------------------------------ccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCC
Q 015882          120 -------------------------------REHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQG  168 (399)
Q Consensus       120 -------------------------------~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g  168 (399)
                                                     ....+|.+|.+|+||||+|+..|+.++++.|++.+.   .+++.+|.+|
T Consensus       197 ~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~---~~vn~~d~~G  273 (337)
T 4g8k_A          197 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDG  273 (337)
T ss_dssp             CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT---CCTTCBCTTS
T ss_pred             ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC---CcccCcCCCC
Confidence                                           223578899999999999999999999999998633   3899999999


Q ss_pred             CCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          169 QTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       169 ~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +||||+|++    .++.+++++|+++|++.+.
T Consensus       274 ~TpL~~A~~----~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          274 KTALLLAVE----LKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             CBHHHHHHH----TTCHHHHHHHHTTSCSSTT
T ss_pred             CCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            999999999    7889999999999998763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.2e-27  Score=221.34  Aligned_cols=190  Identities=19%  Similarity=0.232  Sum_probs=164.1

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+... ......+..|.||||+|+..|+.+++++|+++|+++  +.+|.+|.||||+|+..|+.+++++| +.+
T Consensus        19 ~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   95 (285)
T 1wdy_A           19 DLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             HHHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            57777776552 222334788999999999999999999999999999  88999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhccccc----ccccccCCCCCcHHHHHHHcCcHHHHHHHHhC-CCCC
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNRE----HLFNATDKEGNSLLHLAALNKLIVIVNLLLEG-SSSD  157 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~----~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~-g~~~  157 (399)
                      .+++..|..|+||||.|+..|+.+++++|++.|.+++..    ...+..|..|.||||+|+..|+.+++++|++. +.  
T Consensus        96 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--  173 (285)
T 1wdy_A           96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA--  173 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC--
T ss_pred             CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC--
Confidence            999999999999999999999999999999998873211    01112288899999999999999999999987 77  


Q ss_pred             cccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          158 IIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       158 ~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                        +++.+|..|.||+|+|+..+......+++++|+++|++.+.
T Consensus       174 --~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~  214 (285)
T 1wdy_A          174 --DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV  214 (285)
T ss_dssp             --CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred             --CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC
Confidence              89999999999999999855545558999999999988764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=3.5e-29  Score=233.88  Aligned_cols=176  Identities=15%  Similarity=0.076  Sum_probs=159.5

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.|.+....  ++..  +|+||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        45 ~~v~~Ll~~g~~--~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  118 (285)
T 3kea_A           45 RLVCTLLNAGAL--KNLL--ENEFPLHQAATLEDTKIVKILLFSGLDD--SQFDDKGNTALYYAVDSGNMQTVKLFVKKN  118 (285)
T ss_dssp             HHHHHHHHTTGG--GSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCC--CCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            677888766432  3333  5999999999999999999999999999  88999999999999999999999999 889


Q ss_pred             CCccccccCC-chHHHHHHHcCCHHHHHHHHHhhhcccccccccccCC-CCCcHHHHHHHcCcHHHHHHHHhCCCCCccc
Q 015882           83 ESLAKLTSDA-ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK-EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQ  160 (399)
Q Consensus        83 ~~~~~~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~-~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~  160 (399)
                      ++++.+|..| +||||+|+..|+.+++++|++.+++.        .|. .|+||||+|+..|+.+++++|++.|+    +
T Consensus       119 a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----d  186 (285)
T 3kea_A          119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------FDLAILLSCIHITIKNGHVDMMILLLDYMT----S  186 (285)
T ss_dssp             GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT--------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHH----H
T ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc--------ccccCCccHHHHHHHcChHHHHHHHHHcCC----C
Confidence            9999999999 89999999999999999999997652        333 89999999999999999999999999    9


Q ss_pred             ccccccCCCCH-HHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          161 IDSKNNQGQTA-LDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       161 ~~~~n~~g~Tp-l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      ++.+|..|+|| ||+|+.    .++.+++++|+++|++.+..
T Consensus       187 ~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~gad~~~~  224 (285)
T 3kea_A          187 TNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDINIYSA  224 (285)
T ss_dssp             TCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCBCSTTT
T ss_pred             CCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCCCC
Confidence            99999999998 999998    77899999999999988753

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=7e-28  Score=212.31  Aligned_cols=169  Identities=20%  Similarity=0.191  Sum_probs=152.1

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHH
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDP-QTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILA   99 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~-~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A   99 (399)
                      +..|.||||.|+..|+.+.++.|++.++ ++  +.+|.+|.||||+|+..|+.+++++| +.+++++.+|..|+||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV--DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3568999999999999999999999887 66  88999999999999999999999999 99999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcC
Q 015882          100 VKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANS  179 (399)
Q Consensus       100 ~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~  179 (399)
                      +..|+.+++++|++.+.     ..++.+|..|+||||+|+..++.+++++|++.+.   .+++.+|..|+||||+|+..+
T Consensus        80 ~~~~~~~~~~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~g~t~L~~A~~~~  151 (201)
T 3hra_A           80 GAQGRTEILAYMLKHAT-----PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR---EDIDFQNDFGYTALIEAVGLR  151 (201)
T ss_dssp             HHTTCHHHHHHHHHHSC-----CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC---CCTTCCCTTSCCHHHHHHHSS
T ss_pred             HHcCCHHHHHHHHhccC-----cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCcCCCCCCCCCHHHHHHHhc
Confidence            99999999999996533     2378899999999999999999999999999993   289999999999999999744


Q ss_pred             C-CCcHHHHHHHHHHccCccCC
Q 015882          180 Q-DSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       180 ~-~~~~~~i~~~L~~~ga~~~~  200 (399)
                      . ..+..+++++|+++|++.+.
T Consensus       152 ~~~~~~~~~v~~Ll~~ga~~~~  173 (201)
T 3hra_A          152 EGNQLYQDIVKLLMENGADQSI  173 (201)
T ss_dssp             CCSHHHHHHHHHHHHTTCCTTC
T ss_pred             cchhhHHHHHHHHHHCCCCCCc
Confidence            3 23348999999999988764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=1.4e-28  Score=237.38  Aligned_cols=168  Identities=16%  Similarity=0.157  Sum_probs=106.0

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHH
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETAL   96 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~L   96 (399)
                      ....|.+|.||||+|+..|+.++|++|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+++.+.  .+|+|||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L   88 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPI   88 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHH
Confidence            4567889999999999999999999999999999  89999999999999999999999999 77664433  3455555


Q ss_pred             HHHHHcCCHHHHHHHHHhhh----ccc-----------ccccccccCCCCCcHHHHHHHcC--cHHHHHHHHhCCCCCcc
Q 015882           97 ILAVKSSQIDAFKILVEETK----RHN-----------REHLFNATDKEGNSLLHLAALNK--LIVIVNLLLEGSSSDII  159 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~----~~~-----------~~~lin~~d~~G~T~LHlA~~~~--~~~iv~~Ll~~g~~~~v  159 (399)
                      |+|+..|+.+++++|++.+.    +++           .....+.+|.+|.||||+|+..|  +.+++++|++.|+    
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga----  164 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA----  164 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC----
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC----
Confidence            55555555555555555522    100           00011224444555555555544  4455555554444    


Q ss_pred             cccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCc
Q 015882          160 QIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR  197 (399)
Q Consensus       160 ~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~  197 (399)
                      +++.+|..|.||||+|+.    .++.+++++|+++|++
T Consensus       165 ~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          165 SPTAKDKADETPLMRAME----FRNREALDLMMDTVPS  198 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHCSC
T ss_pred             CCcccCCCCCCHHHHHHH----cCCHHHHHHHHhcccc
Confidence            444444444555554444    3444444444444444

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=5.8e-28  Score=234.26  Aligned_cols=175  Identities=21%  Similarity=0.278  Sum_probs=157.9

Q ss_pred             cccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc---CCccccccC
Q 015882           16 EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS---ESLAKLTSD   91 (399)
Q Consensus        16 ~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~---~~~~~~d~~   91 (399)
                      ..++.+|.+|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| ..+   .+++..|.+
T Consensus       157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~  234 (373)
T 2fo1_E          157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN  234 (373)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC--cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCC
Confidence            346788999999999999999999999999999999  89999999999999999999999999 666   789999999


Q ss_pred             CchHHHHHHHcC---CHHHHHHHHHhhhccccc--ccccccCCCCCcHHHHHHHcCcHHHHHHHHhCC-CCCcccccccc
Q 015882           92 AETALILAVKSS---QIDAFKILVEETKRHNRE--HLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS-SSDIIQIDSKN  165 (399)
Q Consensus        92 g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~--~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g-~~~~v~~~~~n  165 (399)
                      |+||||+|+..+   +.+++++|++.|++.+..  ...+.+|..|+||||+|+..|+.+++++|++.+ +    +++.+|
T Consensus       235 g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~n~~d  310 (373)
T 2fo1_E          235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NKDKQD  310 (373)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC----CTTCCC
T ss_pred             CCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC----CccCcC
Confidence            999999999998   899999999998874321  113447889999999999999999999999886 6    899999


Q ss_pred             cCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          166 NQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       166 ~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      .+|+||||+|+.    .++.+++++|+++|++.+.
T Consensus       311 ~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          311 EDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             TTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred             CCCCCHHHHHHH----cCCHHHHHHHHHcCCCccC
Confidence            999999999998    7889999999999998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=3.3e-28  Score=235.99  Aligned_cols=178  Identities=20%  Similarity=0.227  Sum_probs=160.2

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcC---CCCCCccCCCCCCcHHHHHHHcC---CHHHH
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLD---PQTGSVVEDNGLTTPLHRAAVNG---DTGMI   76 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~---~~~~~~~~d~~g~tpLh~Aa~~g---~~~iv   76 (399)
                      .+++++|.+...  .++..|.+|.||||+|+..|+.+++++|++++   .++  +..|..|.||||+|+..|   +.+++
T Consensus       179 ~~iv~~Ll~~ga--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~d~~g~t~L~~A~~~~~~~~~~~v  254 (373)
T 2fo1_E          179 RRLVAYLMKAGA--DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI--EELDRNGMTALMIVAHNEGRDQVASA  254 (373)
T ss_dssp             HHHHHHHHHTTC--CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT--SCCCTTSCCHHHHHHHSCSTTHHHHH
T ss_pred             HHHHHHHHHCCC--CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh--hhcCCCCCCHHHHHHHhCCcchHHHH
Confidence            367888877653  36778899999999999999999999999987   677  789999999999999998   89999


Q ss_pred             HHh-hccCCccc--------cccCCchHHHHHHHcCCHHHHHHHHHhh-hcccccccccccCCCCCcHHHHHHHcCcHHH
Q 015882           77 REI-ACSESLAK--------LTSDAETALILAVKSSQIDAFKILVEET-KRHNREHLFNATDKEGNSLLHLAALNKLIVI  146 (399)
Q Consensus        77 ~~L-~~~~~~~~--------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~lin~~d~~G~T~LHlA~~~~~~~i  146 (399)
                      ++| +.+.+++.        .|..|+||||+|+..|+.+++++|++.+ .+      +|.+|.+|+||||+|+..|+.++
T Consensus       255 ~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------~n~~d~~g~TpL~~A~~~g~~~i  328 (373)
T 2fo1_E          255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN------KDKQDEDGKTPIMLAAQEGRIEV  328 (373)
T ss_dssp             HHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC------TTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC------ccCcCCCCCCHHHHHHHcCCHHH
Confidence            999 88887775        5678999999999999999999999885 54      88999999999999999999999


Q ss_pred             HHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCcc
Q 015882          147 VNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK  198 (399)
Q Consensus       147 v~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~  198 (399)
                      +++|++.|+    +++.+|.+|+||+|+|+.    .++.+++++|+++|+++
T Consensus       329 v~~Ll~~ga----d~~~~d~~g~t~l~~A~~----~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          329 VMYLIQQGA----SVEAVDATDHTARQLAQA----NNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHTTC----CSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTTC---
T ss_pred             HHHHHHcCC----CccCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCccc
Confidence            999999999    999999999999999999    88999999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=1.4e-28  Score=234.33  Aligned_cols=166  Identities=20%  Similarity=0.185  Sum_probs=143.2

Q ss_pred             HHHHHHHhcCCcccccc-ccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCC---HHHHHHh
Q 015882            4 ELIELAKKDKVQEKDST-QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGD---TGMIREI   79 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~-~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~---~~iv~~L   79 (399)
                      ++++.+.+..  ..++. +|.+|+||||+|+..|+.++|++|+++|+++  +.+|.+|.||||+|+..|+   .++++.|
T Consensus       111 ~~~~~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~--n~~d~~g~TpLh~A~~~g~~~~~~~~~~l  186 (327)
T 1sw6_A          111 EVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR--LYGDNMGESCLVKAVKSVNNYDSGTFEAL  186 (327)
T ss_dssp             HHHHHCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             HHHHHHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence            4455554433  33666 8999999999999999999999999999999  8999999999999999998   6777777


Q ss_pred             -hc-cCCccccccCCchHHHHHHH----cCCHHHHHHHHHhhhcc--------------------cc-------------
Q 015882           80 -AC-SESLAKLTSDAETALILAVK----SSQIDAFKILVEETKRH--------------------NR-------------  120 (399)
Q Consensus        80 -~~-~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~~~~~--------------------~~-------------  120 (399)
                       +. .++++.+|.+|+||||+|++    .|+.+++++|++.+...                    +.             
T Consensus       187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~  266 (327)
T 1sw6_A          187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL  266 (327)
T ss_dssp             HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHC
T ss_pred             HHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHH
Confidence             44 36789999999999999999    89999999999885421                    00             


Q ss_pred             ------cccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882          121 ------EHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       121 ------~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                            +..+|.+|.+|+||||+|++.|+.+++++|+++|+    +++.+|.+|+||||+|++
T Consensus       267 ~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga----d~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          267 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA----DPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             SHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC----CTTCCCTTSCCGGGGTCC
T ss_pred             HHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHh
Confidence                  00388999999999999999999999999999999    999999999999999986

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=3.6e-27  Score=232.94  Aligned_cols=178  Identities=21%  Similarity=0.254  Sum_probs=125.3

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.|.+...  .++..|..|.||||+|+..|+.+++++|+++++++  +.+|.+|.||||+|+..|+.+++++| +.+
T Consensus        28 ~~v~~Ll~~g~--~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  103 (437)
T 1n11_A           28 PIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV--NAKAKDDQTPLHCAARIGHTNMVKLLLENN  103 (437)
T ss_dssp             HHHHHHHHTTC--CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS--SCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC--CCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence            45666655432  24556667777777777777777777777777776  66777777777777777777777777 667


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      ++++..|..|+||||+|+.+|+.+++++|++.+.+      .+..+..|.||||+|+..|+.+++++|++.++    +++
T Consensus       104 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~  173 (437)
T 1n11_A          104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS------QACMTKKGFTPLHVAAKYGKVRVAELLLERDA----HPN  173 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTT
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCC
Confidence            77777777777777777777777777777776554      45666777777777777777777777777777    677


Q ss_pred             ccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          163 SKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       163 ~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      ..|..|.||||+|+.    .++.+++++|++.|++..
T Consensus       174 ~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  206 (437)
T 1n11_A          174 AAGKNGLTPLHVAVH----HNNLDIVKLLLPRGGSPH  206 (437)
T ss_dssp             CCCSSCCCHHHHHHH----TTCHHHHHHHGGGTCCSC
T ss_pred             CCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCC
Confidence            777777777777776    566777777777776544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.2e-27  Score=205.80  Aligned_cols=155  Identities=12%  Similarity=0.147  Sum_probs=138.2

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+.. +...+.+|..|+||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        16 ~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   92 (172)
T 3v30_A           16 DQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP--HILAKERESALSLASTGGYTDIVGLLLERD   92 (172)
T ss_dssp             HHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--hhhcccCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5566666554 4557888999999999999999999999999999999  89999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      .+++.+|..|+||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|+++++    +..
T Consensus        93 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~----~~~  162 (172)
T 3v30_A           93 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD------LTTEADSGYTPMDLAVALGYRKVQQVIENHIL----KLF  162 (172)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH----HHS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH----HHh
Confidence            99999999999999999999999999999999887      78899999999999999999999999999999    888


Q ss_pred             ccccCCCCH
Q 015882          163 SKNNQGQTA  171 (399)
Q Consensus       163 ~~n~~g~Tp  171 (399)
                      ..|..|.||
T Consensus       163 ~~~~~~~~p  171 (172)
T 3v30_A          163 QSNLVPADP  171 (172)
T ss_dssp             CC-------
T ss_pred             cccCCCCCC
Confidence            899888887

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3e-28  Score=221.54  Aligned_cols=165  Identities=17%  Similarity=0.127  Sum_probs=120.0

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHH
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAV  100 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~  100 (399)
                      +..|.||||.|+..|+.+.++.|+++|.++  + .+..|.||||.|+..|+.++++.| +.+++++.+|.+|+||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~--~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV--K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc--c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            457999999999999999999999999998  4 347889999999999999999999 999999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCC-CHHHHHHhcC
Q 015882          101 KSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQ-TALDICKANS  179 (399)
Q Consensus       101 ~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~-Tpl~~a~~~~  179 (399)
                      .+|+.+++++|++.|++      +|.+|.+|+||||+|+..|+.+++++|+++|+    +++.+|..|. ||+|+|..  
T Consensus        79 ~~g~~~~v~~Ll~~ga~------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~~~~t~l~~a~~--  146 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAASCNNVQVCKFLVESGA----AVFAMTYSDMQTAADKCEE--  146 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCSSSCCCHHHHCCS--
T ss_pred             HcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CcceecCCCCcchHHHHHH--
Confidence            99999999999999887      88999999999999999999999999999999    9999998887 99999832  


Q ss_pred             CCCcHHHHHHHHHHccCccCCC
Q 015882          180 QDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       180 ~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      ...++.+++++|+++|++.+..
T Consensus       147 ~~~g~~~~~~~Ll~~~a~~~~~  168 (239)
T 1ycs_B          147 MEEGYTQCSQFLYGVQEKMGIM  168 (239)
T ss_dssp             SSTTCCCHHHHHHHHHHHTTTT
T ss_pred             hhhccHHHHHHHHHhhhccccc
Confidence            1156788999999999987653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=1.2e-27  Score=219.31  Aligned_cols=162  Identities=22%  Similarity=0.195  Sum_probs=141.8

Q ss_pred             CCChHhhHHHhcCCHH----HHHHHhhcCCCCCCcc----CCCCCCcHHHHHHHc---CCHHHHHHh-hccCCccc----
Q 015882           24 NGCTSMHRAPVEGDGE----MIHCLGKLDPQTGSVV----EDNGLTTPLHRAAVN---GDTGMIREI-ACSESLAK----   87 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~----~v~~Ll~~~~~~~~~~----~d~~g~tpLh~Aa~~---g~~~iv~~L-~~~~~~~~----   87 (399)
                      .|+||||.|+..|+.+    ++++|++.+.++  +.    +|.+|.||||+|+..   |+.+++++| +.+++.+.    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i--~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL--TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT--TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            3899999999999997    567777799998  66    899999999999999   999999999 66655542    


Q ss_pred             -------cccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCC-------------CCcHHHHHHHcCcHHHH
Q 015882           88 -------LTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKE-------------GNSLLHLAALNKLIVIV  147 (399)
Q Consensus        88 -------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~-------------G~T~LHlA~~~~~~~iv  147 (399)
                             .|.+|+||||+|+..|+.+++++|++.|++      ++.+|..             |+||||+|+..|+.+++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v  152 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV  152 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                   346799999999999999999999999887      6677765             99999999999999999


Q ss_pred             HHHHh---CCCCCcccccccccCCCCHHHHHHhcCCCCcHHH-------HHHHHHHccCccC
Q 015882          148 NLLLE---GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNE-------IGSILERAAARKQ  199 (399)
Q Consensus       148 ~~Ll~---~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~-------i~~~L~~~ga~~~  199 (399)
                      ++|++   .|+    +++.+|.+|+||||+|+..+.  ++.+       ++++|+++|++..
T Consensus       153 ~~Ll~~~~~ga----~~n~~d~~g~TpLh~A~~~~~--~~~~~~~~~~~iv~~Ll~~ga~~~  208 (256)
T 2etb_A          153 TYLLENPHQPA----SLEATDSLGNTVLHALVMIAD--NSPENSALVIHMYDGLLQMGARLC  208 (256)
T ss_dssp             HHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhccccCC----CcCccCCCCCCHHHHHHHccc--CCchhhHHHHHHHHHHHHcCCCcc
Confidence            99999   888    999999999999999996322  2444       9999999999884

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=9.8e-28  Score=203.47  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=119.2

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCch-H
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAET-A   95 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t-~   95 (399)
                      ....++.|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+ .|+.+++++| +.+.+++.+|..|+| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT--TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            3566788999999999999999999999999999  889999999999985 9999999999 999999999999999 9


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHH
Q 015882           96 LILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC  175 (399)
Q Consensus        96 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a  175 (399)
                      ||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|+++|+    +++.+|..|.||.+-+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGAR------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG----GTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC----CCCccCcCcCcccccC
Confidence            9999999999999999999887      88999999999999999999999999999999    9999999999998744

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=1.2e-26  Score=221.44  Aligned_cols=173  Identities=23%  Similarity=0.257  Sum_probs=142.1

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      +++++|.+...  .++.+|.+|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        72 ~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  147 (351)
T 3utm_A           72 RIVQLLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV--NAMDLWQFTPLHEAASKNRVEVCSLLLSHG  147 (351)
T ss_dssp             HHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC--CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            56777766542  36777788888888888888888888888888888  77888888888888888887777776 433


Q ss_pred             --------------------------------------------------------------------------------
Q 015882           83 --------------------------------------------------------------------------------   82 (399)
Q Consensus        83 --------------------------------------------------------------------------------   82 (399)
                                                                                                      
T Consensus       148 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~  227 (351)
T 3utm_A          148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK  227 (351)
T ss_dssp             CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHH
T ss_pred             CCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHH
Confidence                                                                                            


Q ss_pred             ----------CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 015882           83 ----------ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE  152 (399)
Q Consensus        83 ----------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~  152 (399)
                                .+++.+|.+|+||||+|+++|+.+++++|++.|++      +|.+|..|+||||+|+..|+.+++++|++
T Consensus       228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~  301 (351)
T 3utm_A          228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK------MNALDSLGQTALHRAALAGHLQTCRLLLS  301 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence                      34455677899999999999999999999999877      88999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCcc
Q 015882          153 GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARK  198 (399)
Q Consensus       153 ~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~  198 (399)
                      .|+    +++.+|.+|+||+|+|.        .++.++|.+.+...
T Consensus       302 ~ga----d~~~~~~~g~tal~~a~--------~~~~~~l~~~~~~~  335 (351)
T 3utm_A          302 YGS----DPSIISLQGFTAAQMGN--------EAVQQILSESTPMR  335 (351)
T ss_dssp             TTC----CTTCCCTTSCCHHHHSC--------HHHHHHHHHC----
T ss_pred             cCC----CCCCcCCCCCChhhhhh--------HHHHHHHHhccccc
Confidence            999    99999999999999874        36778887776543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=2.7e-27  Score=221.64  Aligned_cols=172  Identities=22%  Similarity=0.247  Sum_probs=150.0

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+....  ++..|.+|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +++
T Consensus        54 ~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g  129 (299)
T 1s70_B           54 EEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGYLDIAEYLISQG  129 (299)
T ss_dssp             HHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence            567777765533  6788999999999999999999999999999999  89999999999999999999999999 777


Q ss_pred             CCccccc------------------------------------------------------------cCCchHHHHHHHc
Q 015882           83 ESLAKLT------------------------------------------------------------SDAETALILAVKS  102 (399)
Q Consensus        83 ~~~~~~d------------------------------------------------------------~~g~t~Lh~A~~~  102 (399)
                      ++++..|                                                            ..|.||||+|+..
T Consensus       130 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~  209 (299)
T 1s70_B          130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (299)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHC
Confidence            7766554                                                            3477889999999


Q ss_pred             CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCC
Q 015882          103 SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDS  182 (399)
Q Consensus       103 g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~  182 (399)
                      |+.+++++|++.|++      +|.+|.+|+||||+|+..|+.+++++|++.|+    +++.+|..|+||+|+|.+    .
T Consensus       210 g~~~~v~~Ll~~g~d------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l~~A~~----~  275 (299)
T 1s70_B          210 GYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAFDVADE----D  275 (299)
T ss_dssp             TCHHHHHHHHTTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTTTSCCS----G
T ss_pred             CcHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHH----H
Confidence            999999999998877      88999999999999999999999999999999    999999999999999975    3


Q ss_pred             cHHHHHHHHHHc
Q 015882          183 VSNEIGSILERA  194 (399)
Q Consensus       183 ~~~~i~~~L~~~  194 (399)
                       ..+.++.+++.
T Consensus       276 -~~~~l~~l~~~  286 (299)
T 1s70_B          276 -ILGYLEELQKK  286 (299)
T ss_dssp             -GGHHHHHHHHH
T ss_pred             -HHHHHHHHHHH
Confidence             34444444443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=1.2e-27  Score=221.44  Aligned_cols=173  Identities=18%  Similarity=0.232  Sum_probs=142.0

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhh----cCCCCCC--ccCCCCCCcHHHHHHHc---CCHHHHHHh-hccCC---
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGK----LDPQTGS--VVEDNGLTTPLHRAAVN---GDTGMIREI-ACSES---   84 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~----~~~~~~~--~~~d~~g~tpLh~Aa~~---g~~~iv~~L-~~~~~---   84 (399)
                      .+..|..|+||||+|+..|+.++|+.|++    .+.++..  ...|..|.||||+|+..   |+.+++++| +.+++   
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            46678999999999999999999999887    4444410  14588999999999987   999999999 65543   


Q ss_pred             ----c----cccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCC--------------CCCcHHHHHHHcC
Q 015882           85 ----L----AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDK--------------EGNSLLHLAALNK  142 (399)
Q Consensus        85 ----~----~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~--------------~G~T~LHlA~~~~  142 (399)
                          +    ...|..|+||||+|+..|+.+++++|++.|++      ++.+|.              .|+||||+|+..|
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g  159 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD------VQAAANGDFFKKTKGRPGFYFGELPLSLAACTN  159 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC------cCccccccccccccccccccCCCCHHHHHHHcC
Confidence                2    22567899999999999999999999999887      566665              7999999999999


Q ss_pred             cHHHHHHHHh---CCCCCcccccccccCCCCHHHHHHhcCCCCcH-----HHHHHHHHHccCccCC
Q 015882          143 LIVIVNLLLE---GSSSDIIQIDSKNNQGQTALDICKANSQDSVS-----NEIGSILERAAARKQT  200 (399)
Q Consensus       143 ~~~iv~~Ll~---~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~-----~~i~~~L~~~ga~~~~  200 (399)
                      +.+++++|++   .|+    +++.+|.+|+||||+|+..+.....     .+++++|+++|++.+.
T Consensus       160 ~~~~v~~Ll~~~~~ga----d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          160 QLAIVKFLLQNSWQPA----DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             CHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHhcccCCC----CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence            9999999999   888    9999999999999999973332111     6899999999998763

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=7.1e-29  Score=224.45  Aligned_cols=155  Identities=15%  Similarity=0.099  Sum_probs=133.2

Q ss_pred             HHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCc
Q 015882            7 ELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESL   85 (399)
Q Consensus         7 ~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~   85 (399)
                      +++.+...+...+..+.+|.||||+|+..|+.++++.|++.|+++  +.+|.+|.||||+|+..|+.+++++| +.++++
T Consensus         3 ~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP--SQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             -------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            344455556667788889999999999999999999999999999  88999999999999999999999999 999999


Q ss_pred             cccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccC-CCCCcHHHHH--HHcCcHHHHHHHHhCCCCCccccc
Q 015882           86 AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD-KEGNSLLHLA--ALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        86 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d-~~G~T~LHlA--~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      +.+|..|+||||+|+..|+.+++++|++.|++      ++.+| .+|+||||+|  +..++.+++++|++.|+    +++
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga----~~~  150 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAA------IFATTLSDGATAFEKCDPYREGYADCATYLADVEQ----SMG  150 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH----HTT
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC----Ccc
Confidence            99999999999999999999999999999887      77776 6999999999  99999999999999877    454


Q ss_pred             ccccCCCCHHH
Q 015882          163 SKNNQGQTALD  173 (399)
Q Consensus       163 ~~n~~g~Tpl~  173 (399)
                      .+|..|.||++
T Consensus       151 ~~~~~~~~~l~  161 (229)
T 2vge_A          151 LMNSGAVYALW  161 (229)
T ss_dssp             TSGGGEEEESS
T ss_pred             cccCCchHHHH
Confidence            44444444444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=1.6e-26  Score=220.58  Aligned_cols=164  Identities=21%  Similarity=0.267  Sum_probs=143.2

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhh-cCCCCCCccCCCCCCcHHHHHHHcCC----HHHHHHh-hccCCccccccCC
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGK-LDPQTGSVVEDNGLTTPLHRAAVNGD----TGMIREI-ACSESLAKLTSDA   92 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~-~~~~~~~~~~d~~g~tpLh~Aa~~g~----~~iv~~L-~~~~~~~~~d~~g   92 (399)
                      ...+..|.||||+|+..|+.++|++|++ .|.++  +.+|..|.||+|.++..++    .+++++| +.+++++.+|.+|
T Consensus       162 ~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~--n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g  239 (337)
T 4g8k_A          162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADV--NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG  239 (337)
T ss_dssp             --CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT--TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGG
T ss_pred             ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc--CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCC
Confidence            4557789999999999999999999996 58888  8999999999999887654    4578888 9999999999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHh-hhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCH
Q 015882           93 ETALILAVKSSQIDAFKILVEE-TKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTA  171 (399)
Q Consensus        93 ~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tp  171 (399)
                      +||||+|++.|+.++++.|++. +.+      +|.+|.+|+||||+|++.|+.+++++|+++|+    ++|.     .+|
T Consensus       240 ~t~L~~a~~~~~~~~v~~Ll~~~~~~------vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA----d~n~-----~~~  304 (337)
T 4g8k_A          240 KTPLILAVEKKHLGLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRGA----STDC-----GDL  304 (337)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTSTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC----SSTT-----CCH
T ss_pred             CCHHHHHHHhhhhHHHHHHHHhcCCc------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCC-----CCH
Confidence            9999999999999999999975 334      89999999999999999999999999999999    7765     469


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHccCccCCCCC
Q 015882          172 LDICKANSQDSVSNEIGSILERAAARKQTAPV  203 (399)
Q Consensus       172 l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~  203 (399)
                      ||+|+.    .++.+++++|+++||+++..++
T Consensus       305 L~~A~~----~~~~~iv~~Ll~~GA~~d~~~p  332 (337)
T 4g8k_A          305 VMTARR----NYDHSLVKVLLSHGAKEDFHPP  332 (337)
T ss_dssp             HHHHHH----TTCHHHHHHHHHTTCCC-----
T ss_pred             HHHHHH----cCCHHHHHHHHHCcCCCCCCCC
Confidence            999998    7889999999999999886543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1e-25  Score=193.46  Aligned_cols=142  Identities=19%  Similarity=0.261  Sum_probs=131.8

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      .++++.|.+...  .++.+|.+|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +.
T Consensus        27 ~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  102 (169)
T 2y1l_E           27 DDEVRILMANGA--DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV--NAVDHAGMTPLRLAALFGHLEIVEVLLKN  102 (169)
T ss_dssp             HHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            367788877653  36788999999999999999999999999999999  88999999999999999999999999 99


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS  154 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g  154 (399)
                      +.+++.+|.+|+||||+|+..|+.+++++|++.|++      ++.+|..|+||||+|++.++.+++++|++.|
T Consensus       103 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD------VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999887      7889999999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=6.5e-26  Score=192.81  Aligned_cols=142  Identities=18%  Similarity=0.221  Sum_probs=130.6

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+..  ..++.+|..|+||||+|+. |+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        19 ~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   93 (162)
T 1ihb_A           19 EQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP--DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ   93 (162)
T ss_dssp             HHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5677777544  3367889999999999999 9999999999999999  88999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      .+++.+|.+|+||||+|++.|+.+++++|++.+++.     ++.+|.+|+||||+|+..++.+++++|+++|+
T Consensus        94 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----VGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC-----CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999999999999999997762     58899999999999999999999999999997

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1e-26  Score=192.51  Aligned_cols=130  Identities=12%  Similarity=0.081  Sum_probs=124.5

Q ss_pred             ccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccC-Cch
Q 015882           17 KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSD-AET   94 (399)
Q Consensus        17 l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~-g~t   94 (399)
                      .++..|.+|.||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+. |+.+++++| +.+.+++.+|.. |+|
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP--NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc--CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            35788999999999999999999999999999999  8999999999999999 999999999 999999999999 999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           95 ALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        95 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      |||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|+++|+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGAR------LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCC------CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999877      78999999999999999999999999999887

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=8.3e-26  Score=203.79  Aligned_cols=167  Identities=20%  Similarity=0.145  Sum_probs=151.5

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCcccccc-CCchHH
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTS-DAETAL   96 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~-~g~t~L   96 (399)
                      ...|..|.||||.|+..|+.+++++|++.|.++  +.+|..|.||||+|+..|+.+++++| +.+..++..+. .|+|||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV--RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            456889999999999999999999999999998  88999999999999999999999999 77777765554 499999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHH
Q 015882           97 ILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK  176 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~  176 (399)
                      |.|+..|+.+++++|++.|++      ++.+|..|.||||+|+..++.+++++|++.++    +++.+|..|.||+|+|+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~g~t~l~~a~  150 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGAD------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ----DVDMMDQNGMTPLMWAA  150 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC----CccccCCCCCcHHHHHH
Confidence            999999999999999999877      77899999999999999999999999999999    89999999999999999


Q ss_pred             hcCCCCcHHHHHHHHHHccCccCC
Q 015882          177 ANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       177 ~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      ..   ....++.++|++.|++.+.
T Consensus       151 ~~---~~~~~~~~~L~~~~~~~~~  171 (240)
T 3eu9_A          151 YR---THSVDPTRLLLTFNVSVNL  171 (240)
T ss_dssp             HH---CCSSTTHHHHHHTTCCTTC
T ss_pred             Hh---CChHHHHHHHHhcCCCcch
Confidence            52   2336788999999988764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=1.2e-26  Score=213.01  Aligned_cols=166  Identities=19%  Similarity=0.166  Sum_probs=140.7

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhh----cCCCCCCccCC----CCCCcHHHHHH---HcCCHHHHHHh-hcc-------
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGK----LDPQTGSVVED----NGLTTPLHRAA---VNGDTGMIREI-ACS-------   82 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~----~~~~~~~~~~d----~~g~tpLh~Aa---~~g~~~iv~~L-~~~-------   82 (399)
                      +..|+||||.|+..|+.+.++.|++    .+.++  +..+    .+|.||||+|+   ..|+.+++++| +.+       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL--TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT--TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc--chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            4678999999999999996555555    88888  5444    78999999999   67999999999 544       


Q ss_pred             ----CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccC--------------CCCCcHHHHHHHcCcH
Q 015882           83 ----ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD--------------KEGNSLLHLAALNKLI  144 (399)
Q Consensus        83 ----~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d--------------~~G~T~LHlA~~~~~~  144 (399)
                          ...+..|.+|+||||+|+..|+.+++++|++.|++      ++.+|              ..|+||||+|+..|+.
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  153 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD------VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP  153 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC------cCccccccccCcccccccccCCCCHHHHHHHcCCH
Confidence                33455566899999999999999999999999887      66666              6899999999999999


Q ss_pred             HHHHHHHh---CCCCCcccccccccCCCCHHHHHHhcCCCCc-----HHHHHHHHHHccCccC
Q 015882          145 VIVNLLLE---GSSSDIIQIDSKNNQGQTALDICKANSQDSV-----SNEIGSILERAAARKQ  199 (399)
Q Consensus       145 ~iv~~Ll~---~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~-----~~~i~~~L~~~ga~~~  199 (399)
                      +++++|++   .|+    +++.+|.+|+||||+|+..+....     ..+++++|+++|++..
T Consensus       154 ~~v~~Ll~~~~~ga----~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          154 HIVHYLTENGHKQA----DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             HHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhccccCC----CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence            99999999   888    999999999999999996333211     1589999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=5.7e-26  Score=196.88  Aligned_cols=152  Identities=16%  Similarity=0.168  Sum_probs=139.8

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+.. +..++..|..|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        19 ~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   95 (179)
T 3f6q_A           19 VAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLLQYK   95 (179)
T ss_dssp             HHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5666666554 4457889999999999999999999999999999999  88999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccc
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQID  162 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~  162 (399)
                      .+++.+|.+|+||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|++.|+    +++
T Consensus        96 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~----~~~  165 (179)
T 3f6q_A           96 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL------VSICNKYGEMPVDKAKAPLRELLRERAEKMGQ----NLN  165 (179)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC----CCS
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------cchhccCCCCcHHHHHHHHHHHHHHHHHHhhc----Ccc
Confidence            99999999999999999999999999999999887      78999999999999999999999999999999    787


Q ss_pred             ccccCC
Q 015882          163 SKNNQG  168 (399)
Q Consensus       163 ~~n~~g  168 (399)
                      ..+.++
T Consensus       166 ~~~~~~  171 (179)
T 3f6q_A          166 RIPYKD  171 (179)
T ss_dssp             CBCCCC
T ss_pred             cCCccc
Confidence            766554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=4.2e-26  Score=188.82  Aligned_cols=133  Identities=15%  Similarity=0.200  Sum_probs=126.0

Q ss_pred             CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccc
Q 015882           48 DPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNA  126 (399)
Q Consensus        48 ~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~  126 (399)
                      ++++  +.+|..|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+. |+.+++++|++.|++      ++.
T Consensus         2 ~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~------~~~   72 (136)
T 1d9s_A            2 SPGI--HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE------PNC   72 (136)
T ss_dssp             CCCC--SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC------SSC
T ss_pred             CCCc--cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC------CCC
Confidence            3556  78999999999999999999999999 8899999999999999999999 999999999999887      789


Q ss_pred             cCCC-CCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCc
Q 015882          127 TDKE-GNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR  197 (399)
Q Consensus       127 ~d~~-G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~  197 (399)
                      +|.. |+||||+|+..|+.+++++|++.|+    +++.+|..|+||+|+|+.    .++.+++++|+++|++
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVCDAWGRLPVDLAEE----QGHRDIARYLHAATGD  136 (136)
T ss_dssp             CBTTTTBCHHHHHHHHTCHHHHHHHHHTCC----CCCCCSSSSSCHHHHHHH----HTCHHHHHHHHHHHCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence            9999 9999999999999999999999999    999999999999999998    7789999999999975

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.1e-25  Score=188.58  Aligned_cols=139  Identities=19%  Similarity=0.187  Sum_probs=129.1

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+. .+...+..|..|.||||+ +..|+.++++.|+++|+++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        16 ~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   91 (156)
T 1bd8_A           16 QEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP--NVQDTSGTSPVHDAARTGFLDTLKVLVEHG   91 (156)
T ss_dssp             HHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            567777666 455678899999999999 9999999999999999999  89999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEG  153 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~  153 (399)
                      .+++.+|.+|+||||+|+..|+.+++++|++. ++      ++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        92 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD------LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999999999999999987 55      789999999999999999999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=3.3e-25  Score=187.03  Aligned_cols=136  Identities=15%  Similarity=0.148  Sum_probs=125.6

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+...+.   ..|..|.||||+|+..|+.+++++|++.++++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        16 ~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   90 (153)
T 1awc_B           16 DEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR--DARTKVDRTPLHMAASEGHANIVEVLLKHG   90 (153)
T ss_dssp             HHHHHHHHHTCCC---CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcChHHHHHHHHHcC
Confidence            5677776665432   25889999999999999999999999999999  88999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHH
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLL  150 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~L  150 (399)
                      .+++.+|.+|+||||+|+.+|+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|
T Consensus        91 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999887      788999999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=1.2e-25  Score=191.95  Aligned_cols=142  Identities=17%  Similarity=0.128  Sum_probs=128.8

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+.. +......|..|.||||+|+..|+.+++++|+++++++  +.+|.+|.||||+|+..|+.+++++| +.+
T Consensus        22 ~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   98 (165)
T 3twr_A           22 ETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPLHNACSYGHYEVAELLVKHG   98 (165)
T ss_dssp             HHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC--CccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Confidence            5566665543 4456778889999999999999999999999999999  89999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      .+++.+|..|+||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+. ++.+++++|++.|+
T Consensus        99 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           99 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD------PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999999999999999999999999999887      78999999999999877 89999999999886

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.3e-26  Score=202.84  Aligned_cols=158  Identities=15%  Similarity=0.080  Sum_probs=140.2

Q ss_pred             CChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCH----HHHHHh-hccCCccccccCCchHHHHH
Q 015882           25 GCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDT----GMIREI-ACSESLAKLTSDAETALILA   99 (399)
Q Consensus        25 G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~----~iv~~L-~~~~~~~~~d~~g~t~Lh~A   99 (399)
                      +.++||.|+..|+.+.++.+++.+.+.   ..+..|+||||+|+..|+.    +++++| +.|++++.+|.+|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC---HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc---ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            578999999999999999999987543   2237899999999999985    599999 99999999999999999999


Q ss_pred             HHcCC------HHHHHHHHHhhhcccccccccccCCCCC-cHHHHHHHcC-----cHHHHHHHHh-CCCCCccccccccc
Q 015882          100 VKSSQ------IDAFKILVEETKRHNREHLFNATDKEGN-SLLHLAALNK-----LIVIVNLLLE-GSSSDIIQIDSKNN  166 (399)
Q Consensus       100 ~~~g~------~~~v~~Ll~~~~~~~~~~lin~~d~~G~-T~LHlA~~~~-----~~~iv~~Ll~-~g~~~~v~~~~~n~  166 (399)
                      +..++      .+++++|++.|++      +|.+|.+|+ ||||+|+..+     +.+++++|++ .|+    +++.+|.
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga----d~~~~d~  152 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL----QLLIKDK  152 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC----CTTCCCT
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC----CCcccCC
Confidence            99987      6889999999988      899999999 9999999944     4579999999 899    9999999


Q ss_pred             CCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          167 QGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       167 ~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      .|+||||+|++    .+..+++++|.++..+.+
T Consensus       153 ~G~TpL~~A~~----~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          153 WGLTALEFVKR----CQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             TSCCHHHHHHT----TTCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence            99999999998    778899999987765443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.6e-25  Score=185.21  Aligned_cols=128  Identities=16%  Similarity=0.170  Sum_probs=118.8

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHH
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALI   97 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh   97 (399)
                      ......|.||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| +.+++++..|.+|+||||
T Consensus         8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A            8 HHHGSDLGKKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH   85 (136)
T ss_dssp             ----CHHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcccccccHHHHHHHHhCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence            344567899999999999999999999999999  88999999999999999999999999 999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 015882           98 LAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS  154 (399)
Q Consensus        98 ~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g  154 (399)
                      +|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|++.|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGAD------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCC------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999877      7899999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=2.4e-25  Score=190.43  Aligned_cols=142  Identities=15%  Similarity=0.215  Sum_probs=132.4

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+..  ..++.+|.+|.||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        17 ~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   92 (167)
T 3v31_A           17 LYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLLDCG   92 (167)
T ss_dssp             HHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            5677776654  337888999999999999999999999999999999  88999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      .+++.+|.+|+||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|++++.
T Consensus        93 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD------PTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887      78899999999999999999999999998876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.4e-25  Score=179.63  Aligned_cols=124  Identities=32%  Similarity=0.461  Sum_probs=119.7

Q ss_pred             CCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHc
Q 015882           24 NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKS  102 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~  102 (399)
                      +|+||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence            5899999999999999999999999999  88999999999999999999999999 99999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882          103 SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus       103 g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      |+.+++++|++.|.+      ++.+|.+|+||||+|+..++.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999877      78899999999999999999999999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=2.9e-25  Score=194.51  Aligned_cols=141  Identities=18%  Similarity=0.141  Sum_probs=130.1

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.+.+..  ..++..|..|.||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| +.+
T Consensus        49 ~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  124 (192)
T 2rfm_A           49 NAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV--NTKDFSGKTPLMWSIIFGYSEMSYFLLEHG  124 (192)
T ss_dssp             GGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            5566666543  236778899999999999999999999999999999  89999999999999999999999999 999


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS  154 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g  154 (399)
                      .+++.+|.+|+||||+|+..|+.+++++|++.|++      ++.+|..|+||||+|+..|+.+++++|++.+
T Consensus       125 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD------ISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999999999999999887      7899999999999999999999999999864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=2.4e-25  Score=206.87  Aligned_cols=165  Identities=15%  Similarity=0.163  Sum_probs=149.8

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccC-CccccccCCchHHHHH
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSE-SLAKLTSDAETALILA   99 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~-~~~~~d~~g~t~Lh~A   99 (399)
                      +..+.+++|.|+..|+.+.++.+++.+.+...+.+|.+|.||||+|+..|+.+++++| +.+. +++..|..|+||||+|
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            3456789999999999999999998776622278999999999999999999999999 7776 9999999999999999


Q ss_pred             H-----HcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHH
Q 015882          100 V-----KSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI  174 (399)
Q Consensus       100 ~-----~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~  174 (399)
                      +     ..++.+++++|++.|..      .+..|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+||||+
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga----d~n~~d~~G~TpLh~  222 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNI------NAKASQAGQTALMLAVSHGRVDVVKALLACEA----DVNVQDDDGSTALMC  222 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCCCCCCCCCHHHH
Confidence            9     67889999999998765      67889999999999999999999999999999    999999999999999


Q ss_pred             HHhcCCCCcHHHHHHHHHH-ccCccCC
Q 015882          175 CKANSQDSVSNEIGSILER-AAARKQT  200 (399)
Q Consensus       175 a~~~~~~~~~~~i~~~L~~-~ga~~~~  200 (399)
                      |+.    .++.+++++|++ .|++.+.
T Consensus       223 A~~----~g~~~iv~~Ll~~~gad~~~  245 (276)
T 4hbd_A          223 ACE----HGHKEIAGLLLAVPSCDISL  245 (276)
T ss_dssp             HHH----HTCHHHHHHHHTSTTCCTTC
T ss_pred             HHH----CCCHHHHHHHHhcCCCCCcC
Confidence            998    788999999999 8888764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=6.8e-25  Score=208.84  Aligned_cols=164  Identities=16%  Similarity=0.122  Sum_probs=141.5

Q ss_pred             hHhhHHHhcCCHHHHHHHhhcCCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCC
Q 015882           27 TSMHRAPVEGDGEMIHCLGKLDPQTGSVV-EDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQ  104 (399)
Q Consensus        27 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~-~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~  104 (399)
                      +.+|.|+..+..++++.|++.|.++  +. +|.+|.||||+|+..|+.+++++| +.+++++.+|.+|+||||+|+.+|+
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dv--n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNL--NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCS--CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc
Confidence            3468899999999999999999999  77 899999999999999999999999 9999999999999999999999998


Q ss_pred             ---HHHHHHHHHhhhcccccccccccCCCCCcHHHHHHH----cCcHHHHHHHHhCCC--------------------CC
Q 015882          105 ---IDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAL----NKLIVIVNLLLEGSS--------------------SD  157 (399)
Q Consensus       105 ---~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~----~~~~~iv~~Ll~~g~--------------------~~  157 (399)
                         .++++.|++.+..     .++.+|.+|+||||+|++    .|+.+++++|++.++                    ..
T Consensus       177 ~~~~~~~~~ll~~~~~-----~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~  251 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYP-----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP  251 (327)
T ss_dssp             HHHTTCHHHHHHHHGG-----GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------
T ss_pred             cccHHHHHHHHHhhhc-----cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc
Confidence               7888888888632     278999999999999999    899999999998732                    00


Q ss_pred             c---------------------ccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          158 I---------------------IQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       158 ~---------------------v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      .                     .+++.+|.+|+||||+|+.    .++.+++++|+++|++.+..
T Consensus       252 ~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          252 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             --------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTCC
T ss_pred             ccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCccc
Confidence            0                     0478899999999999998    78899999999999987753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.4e-24  Score=173.01  Aligned_cols=125  Identities=31%  Similarity=0.465  Sum_probs=119.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHH
Q 015882           59 GLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL  137 (399)
Q Consensus        59 ~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHl  137 (399)
                      +|.||||+|+..|+.+++++| +.+.+++..|..|.||||.|+..++.+++++|++.+.+      ++.+|..|+||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC------CcccCCCCCcHHHH
Confidence            589999999999999999999 88999999999999999999999999999999998877      78899999999999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCc
Q 015882          138 AALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAAR  197 (399)
Q Consensus       138 A~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~  197 (399)
                      |+..++.+++++|++.|+    +++.+|.+|+||+|+|+.    .++.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHTCC
T ss_pred             HHHcChHHHHHHHHHcCC----CCcccCCCCCCHHHHHHH----cCcHHHHHHHHHcCCC
Confidence            999999999999999999    999999999999999998    7889999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=4.5e-25  Score=182.64  Aligned_cols=128  Identities=21%  Similarity=0.222  Sum_probs=117.7

Q ss_pred             cccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHH
Q 015882           20 TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALIL   98 (399)
Q Consensus        20 ~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~   98 (399)
                      .+|.+|+||||+|+..|+.+++++|++.++++  +.+|..|.||||+|+..|+.+++++| +.+.+++.+|.+|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP--NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHH
Confidence            57889999999999999999999999999999  89999999999999999999999999 9999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           99 AVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        99 A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      |+..|+.+++++|++.|++      ++.+|.+|+||||+|+..+..+++++|.+.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGAS------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCC------TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999887      78999999999999999998888887776554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2.6e-24  Score=177.98  Aligned_cols=127  Identities=24%  Similarity=0.356  Sum_probs=118.0

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCc
Q 015882           55 VEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS  133 (399)
Q Consensus        55 ~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T  133 (399)
                      .....|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+.+|+.+++++|++.|++      ++.+|.+|+|
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t   82 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD------VNAVDAIGFT   82 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCC
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCC
Confidence            4566788999999999999999999 88999999999999999999999999999999999877      7899999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHcc
Q 015882          134 LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       134 ~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~g  195 (399)
                      |||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|+.    .++.+++++|+++|
T Consensus        83 ~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           83 PLHLAAFIGHLEIAEVLLKHGA----DVNAQDKFGKTAFDISIG----NGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC----CCcCcCCCCCCHHHHHHH----CCCHHHHHHHHHcC
Confidence            9999999999999999999999    999999999999999998    78899999999876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=2.8e-24  Score=187.05  Aligned_cols=140  Identities=19%  Similarity=0.119  Sum_probs=127.8

Q ss_pred             ccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccc-cCCchHHHH
Q 015882           21 QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLT-SDAETALIL   98 (399)
Q Consensus        21 ~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d-~~g~t~Lh~   98 (399)
                      .|.+|.||||+|+..|+.++++.|++ +.++  +.+|..|.||||+|+..|+.+++++| +++++++.+| .+|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~--~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV--DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            46789999999999999999999999 8888  88999999999999999999999999 9999999998 889999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhc
Q 015882           99 AVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN  178 (399)
Q Consensus        99 A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~  178 (399)
                      |+..|+.+++++|++.|++      ++.+|.+|+||||+|++.++.                     ..+.+|+++++. 
T Consensus       117 A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~~~---------------------~~~~~~l~~a~~-  168 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGAD------IEVEDERGLTALELAREILKT---------------------TPKGNPMQFGRR-  168 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCC------TTCCCTTSCCHHHHHHHHHHT---------------------CCCCSHHHHHHH-
T ss_pred             HHhcCcHHHHHHHHHcCCC------CcCCCCCCCCHHHHHHHhccC---------------------cccccHHHHHHH-
Confidence            9999999999999999887      789999999999999875421                     346799999998 


Q ss_pred             CCCCcHHHHHHHHHHc
Q 015882          179 SQDSVSNEIGSILERA  194 (399)
Q Consensus       179 ~~~~~~~~i~~~L~~~  194 (399)
                         .+..+++++|.++
T Consensus       169 ---~~~~~i~~~L~~~  181 (183)
T 3deo_A          169 ---IGLEKVINVLEGQ  181 (183)
T ss_dssp             ---HHHHHHHHHHHTC
T ss_pred             ---cCHHHHHHHHHHh
Confidence               8889999998764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=6e-25  Score=199.68  Aligned_cols=144  Identities=15%  Similarity=0.119  Sum_probs=130.0

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHH
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAV  100 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~  100 (399)
                      +..|.||||.|+..|+.++++.|++.++++  +.+|..|.||||+|+..|+.+++++| +++++++.+|.+|+||||+|+
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~  111 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA  111 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSC--CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            467899999999999999999999999998  89999999999999999999999999 999999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcccccccccccCCCCC-cHHHHH--HHcCcHHHHHHHHhCCCCCccccccc---------ccCC
Q 015882          101 KSSQIDAFKILVEETKRHNREHLFNATDKEGN-SLLHLA--ALNKLIVIVNLLLEGSSSDIIQIDSK---------NNQG  168 (399)
Q Consensus       101 ~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~-T~LHlA--~~~~~~~iv~~Ll~~g~~~~v~~~~~---------n~~g  168 (399)
                      .+|+.+++++|++.|++      ++.+|..|. ||||+|  +..|+.+++++|++.++    +++..         +..+
T Consensus       112 ~~~~~~~v~~Ll~~ga~------~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a----~~~~~~~~~~~al~d~~~  181 (239)
T 1ycs_B          112 SCNNVQVCKFLVESGAA------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE----KMGIMNKGVIYALWDYEP  181 (239)
T ss_dssp             HTTCHHHHHHHHHTTCC------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH----HTTTTGGGEEEESSCBCC
T ss_pred             HcCCHHHHHHHHHcCCC------cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhh----cccccccceEEEEeccCC
Confidence            99999999999999888      788888877 999999  78899999999999998    66665         5557


Q ss_pred             CCHHHHHHh
Q 015882          169 QTALDICKA  177 (399)
Q Consensus       169 ~Tpl~~a~~  177 (399)
                      +++.+++..
T Consensus       182 ~~~~eLa~~  190 (239)
T 1ycs_B          182 QNDDELPMK  190 (239)
T ss_dssp             SSTTBCCBC
T ss_pred             CCCCccccc
Confidence            777777664

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=9.2e-25  Score=195.90  Aligned_cols=138  Identities=14%  Similarity=0.087  Sum_probs=116.4

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc-cCCccccccCCchHH
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC-SESLAKLTSDAETAL   96 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~-~~~~~~~d~~g~t~L   96 (399)
                      ...|.+|.||||+|+..|+.++++.|++.++++  +.+|..|.||||+|+..|+.+++++| .. +.+++.+|.+|+|||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCc--cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            445778899999999999999999999999998  89999999999999999999999999 66 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCC
Q 015882           97 ILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQG  168 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g  168 (399)
                      |+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.++++.|++.++    ..+..|.+|
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~----~~~~~~~~~  206 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGAR------TDLRNIEKKLAFDMATNAACASLLKKKQGTDA----VRTLSNAED  206 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCC------SCCCCTTSCCHHHHCCSHHHHHHHC--------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------CccccCCCCCHHHHhcchhHHHHHHHHhccch----hhhccchhh
Confidence            999999999999999999888      78999999999999999999999999999998    666666554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=2.5e-24  Score=178.14  Aligned_cols=127  Identities=21%  Similarity=0.209  Sum_probs=116.1

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCc
Q 015882           55 VEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS  133 (399)
Q Consensus        55 ~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T  133 (399)
                      .+|.+|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+..|+.+++++|++.+++      ++.+|.+|+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t   78 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL------VNTTGYQNDS   78 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCGGGCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc------ccCcCCCCCC
Confidence            4789999999999999999999999 99999999999999999999999999999999999877      7889999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHcc
Q 015882          134 LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       134 ~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~g  195 (399)
                      |||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|..    .+..++.++|.+.+
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~----~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGA----SRNAVNIFGLRPVDYTDD----ESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCGGGGCCC----HHHHHHHSCC----
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHhh----ccHHHHHhhccccc
Confidence            9999999999999999999999    999999999999999986    66777777766554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=3.5e-24  Score=195.36  Aligned_cols=143  Identities=19%  Similarity=0.127  Sum_probs=130.2

Q ss_pred             ccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccc-cCCchHHHH
Q 015882           21 QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLT-SDAETALIL   98 (399)
Q Consensus        21 ~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d-~~g~t~Lh~   98 (399)
                      .+.+|.||||+|+..|+.++++.|++ +.++  +.+|..|.||||+|+..|+.+++++| +++++++.+| ..|+||||+
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDV--DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT--TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC--CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            35689999999999999999999999 8888  89999999999999999999999999 9999999998 789999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhc
Q 015882           99 AVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN  178 (399)
Q Consensus        99 A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~  178 (399)
                      |+.+|+.+++++|++.|++      ++.+|.+|+||||+|+..+                     .+..+.||+|+|+. 
T Consensus       118 A~~~g~~~~v~~Ll~~ga~------~~~~d~~g~t~l~~A~~~~---------------------~~~~~~~~l~~a~~-  169 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGAD------IEVEDERGLTALELAREIL---------------------KTTPKGNPMQFGRR-  169 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHH---------------------TTCCCSSHHHHHHH-
T ss_pred             HHHcCCHHHHHHHHHCCCC------CCCCCCCCCcHHHHHHHHH---------------------hccCCCCHHHHHHH-
Confidence            9999999999999999887      7899999999999998632                     12567999999998 


Q ss_pred             CCCCcHHHHHHHHHHccCc
Q 015882          179 SQDSVSNEIGSILERAAAR  197 (399)
Q Consensus       179 ~~~~~~~~i~~~L~~~ga~  197 (399)
                         .++.+++++|.+++.+
T Consensus       170 ---~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          170 ---IGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ---HHHHHHHHHHHHHHEE
T ss_pred             ---cChHHHHHHHHHhccc
Confidence               8899999999987654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.8e-24  Score=189.18  Aligned_cols=136  Identities=10%  Similarity=0.060  Sum_probs=120.4

Q ss_pred             cccc-CCCChHhhHHHhcCCH----HHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCC------HHHHHHh-hccCCcc
Q 015882           19 STQN-QNGCTSMHRAPVEGDG----EMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGD------TGMIREI-ACSESLA   86 (399)
Q Consensus        19 ~~~d-~~G~TpLh~Aa~~G~~----~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~------~~iv~~L-~~~~~~~   86 (399)
                      +..+ ..|+||||+|+..|+.    +++++|+++|+++  +.+|.+|+||||+|+..|+      .+++++| +.|++++
T Consensus        31 ~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv--n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin  108 (186)
T 3t8k_A           31 EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI--KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT  108 (186)
T ss_dssp             SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS--SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred             ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence            3344 7799999999999985    5999999999999  8999999999999999987      6889999 9999999


Q ss_pred             ccccCCc-hHHHHHHHcC-----CHHHHHHHHH-hhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcc
Q 015882           87 KLTSDAE-TALILAVKSS-----QIDAFKILVE-ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDII  159 (399)
Q Consensus        87 ~~d~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v  159 (399)
                      .+|.+|+ ||||+|+..+     +.+++++|++ .|++      ++.+|.+|+||||+|++.++.+++++|.+...    
T Consensus       109 ~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad------~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~----  178 (186)
T 3t8k_A          109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ------LLIKDKWGLTALEFVKRCQKPIALKMMEDYIK----  178 (186)
T ss_dssp             SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC------TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH----
T ss_pred             ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH----
Confidence            9999999 9999999954     4569999999 8887      89999999999999999999999999998765    


Q ss_pred             ccccccc
Q 015882          160 QIDSKNN  166 (399)
Q Consensus       160 ~~~~~n~  166 (399)
                      ..+.+++
T Consensus       179 ~~~~~~~  185 (186)
T 3t8k_A          179 KYNLKEN  185 (186)
T ss_dssp             HHTCCC-
T ss_pred             HHhcccC
Confidence            5555543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=3.4e-24  Score=181.51  Aligned_cols=133  Identities=14%  Similarity=0.159  Sum_probs=118.2

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCC
Q 015882           54 VVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGN  132 (399)
Q Consensus        54 ~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~  132 (399)
                      ...+..|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+ .|+.+++++|++.|++      ++.+|..|+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~------~~~~d~~g~   78 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------PNCADPATL   78 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------CCCCCTTTC
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC------CCCcCCCCC
Confidence            56788899999999999999999999 889999999999999999985 9999999999999877      889999999


Q ss_pred             c-HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          133 S-LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       133 T-~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      | |||+|+..|+.+++++|+++|+    +++.+|..|+||||+|+.    .++.+++++|+++|++....
T Consensus        79 ttpL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~----~~~~~~v~~Ll~~ga~~~~~  140 (156)
T 1bi7_B           79 TRPVHDAAREGFLDTLVVLHRAGA----RLDVRDAWGRLPVDLAEE----LGHRDVARYLRAAAGGTRGS  140 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTC----CSSCCCTTCCCHHHHHHH----HTCHHHHHHHSSCC------
T ss_pred             cHHHHHHHHCCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHH----hCHHHHHHHHHHcCCCCCcc
Confidence            9 9999999999999999999999    999999999999999998    78899999999999987753

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=7.6e-24  Score=171.92  Aligned_cols=114  Identities=15%  Similarity=0.113  Sum_probs=104.4

Q ss_pred             ccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHH
Q 015882           21 QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILA   99 (399)
Q Consensus        21 ~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A   99 (399)
                      .+..|.||||+|+..|+.++++.|++.++++  +.+|..|.||||+|+..|+.+++++| +.+.+++.+|.+|+||||+|
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCT--TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCc--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            3567899999999999999999999999998  88999999999999999999999999 99999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcC
Q 015882          100 VKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK  142 (399)
Q Consensus       100 ~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~  142 (399)
                      +..|+.+++++|++.|++      ++.+|.+|+||||+|...+
T Consensus        81 ~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGAD------KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHCCCHH
T ss_pred             HHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHhCCHH
Confidence            999999999999999887      7899999999999994433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=1.9e-23  Score=196.52  Aligned_cols=137  Identities=16%  Similarity=0.060  Sum_probs=124.0

Q ss_pred             CCCChHhhHHHhcCCHHHHHHHhhcCCCCCCcc------CCCCCCcHHHHHHHc---CCHHHHHHh-hccCCccccccCC
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVV------EDNGLTTPLHRAAVN---GDTGMIREI-ACSESLAKLTSDA   92 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~------~d~~g~tpLh~Aa~~---g~~~iv~~L-~~~~~~~~~d~~g   92 (399)
                      ..+.++||.|+..|+.+.++.|++.++++  +.      .|..|.||||+|+..   |+.+++++| +++++++.+|.+|
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~--~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G  226 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDF--GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG  226 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCT--TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcc--cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence            34567899999999999999999999998  55      689999999999997   899999999 8999999999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHH
Q 015882           93 ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL  172 (399)
Q Consensus        93 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl  172 (399)
                      +||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|++.++    +      .|.|||
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga----~------~g~tpL  290 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRAL------VGTVNEAGETALDIARKKHHKECEELLEQAQA----G------TFAFPL  290 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH----H------TTSSCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC----C------CCCChh
Confidence            9999999999999999999999888      78999999999999999999999999999887    3      689999


Q ss_pred             HHHHh
Q 015882          173 DICKA  177 (399)
Q Consensus       173 ~~a~~  177 (399)
                      |+|+.
T Consensus       291 h~A~~  295 (301)
T 2b0o_E          291 HVDYS  295 (301)
T ss_dssp             C----
T ss_pred             HHHHh
Confidence            99997

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=3.9e-23  Score=186.71  Aligned_cols=147  Identities=17%  Similarity=0.167  Sum_probs=125.2

Q ss_pred             HHHHhhcCCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcc
Q 015882           41 IHCLGKLDPQTG-SVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRH  118 (399)
Q Consensus        41 v~~Ll~~~~~~~-~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  118 (399)
                      ++.|++++.++. .+..+.+|.||||+|+..|+.+++++| +.+.+++.+|.+|+||||+|+..|+.+++++|++.|++ 
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            467888887762 123455677889999999999999999 98999999999999999999999999999999999887 


Q ss_pred             cccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccc-cCCCCHHHHH--HhcCCCCcHHHHHHHHHHcc
Q 015882          119 NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKN-NQGQTALDIC--KANSQDSVSNEIGSILERAA  195 (399)
Q Consensus       119 ~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n-~~g~Tpl~~a--~~~~~~~~~~~i~~~L~~~g  195 (399)
                           +|.+|.+|+||||+|+..|+.+++++|++.|+    +++.++ .+|+||||+|  +.    .++.+++++|+++|
T Consensus        80 -----~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga----~~~~~~~~~g~tpL~~A~a~~----~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           80 -----VNSPDSHGWTPLHCAASCNDTVICMALVQHGA----AIFATTLSDGATAFEKCDPYR----EGYADCATYLADVE  146 (229)
T ss_dssp             -----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC----CTTCCCSSTTCCTGGGCCTTS----TTHHHHHHHHHHHH
T ss_pred             -----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CcccccCCCCCCHHHHHHHHh----cChHHHHHHHHHcC
Confidence                 88999999999999999999999999999999    899986 6999999999  66    78999999999999


Q ss_pred             CccCCC
Q 015882          196 ARKQTA  201 (399)
Q Consensus       196 a~~~~~  201 (399)
                      ++.+..
T Consensus       147 a~~~~~  152 (229)
T 2vge_A          147 QSMGLM  152 (229)
T ss_dssp             HHTTTS
T ss_pred             CCcccc
Confidence            987753

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=6.2e-23  Score=166.49  Aligned_cols=112  Identities=21%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcH
Q 015882           56 EDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSL  134 (399)
Q Consensus        56 ~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~  134 (399)
                      .+..|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+..|+.+++++|++.|++      +|.+|.+|+||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~tp   76 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD------INAPDKHHITP   76 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC------TTCCCTTSCCH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCCH
Confidence            356788999999999999999999 99999999999999999999999999999999998877      88999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882          135 LHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       135 LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      ||+|+..++.+++++|++.|+    +++.+|.+|+||+|+|..
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGA----DKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHhCC
Confidence            999999999999999999999    999999999999999953

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=1.4e-24  Score=210.17  Aligned_cols=159  Identities=14%  Similarity=0.066  Sum_probs=132.0

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCc---cccccCCc
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTG-SVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESL---AKLTSDAE   93 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~-~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~---~~~d~~g~   93 (399)
                      ..++.+++||||+|+..|+.++|++|+++++... ....|..|.||||+||..|+.+++++| +.+++.   +..+.+ +
T Consensus        86 ~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~  164 (376)
T 2aja_A           86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y  164 (376)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred             HHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence            3456678899999999999999999999987321 023456788999999999999999999 887642   222333 9


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhhhcccccccccc--cCCCCCcHHHHHH-HcCcHHHHHHHHhCCCCCcccccccccCCCC
Q 015882           94 TALILAVKSSQIDAFKILVEETKRHNREHLFNA--TDKEGNSLLHLAA-LNKLIVIVNLLLEGSSSDIIQIDSKNNQGQT  170 (399)
Q Consensus        94 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~--~d~~G~T~LHlA~-~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~T  170 (399)
                      ||||+|+.+|+.+++++|++.|++      ++.  +|.+|+||||+|+ ..|+.+++++|++.|+    +       |.|
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~------~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga----~-------~~t  227 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPT------EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV----M-------LAY  227 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGG------GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH----H-------HHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCc------cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC----c-------cch
Confidence            999999999999999999999887      555  8888999999999 9999999999999765    2       789


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          171 ALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       171 pl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      |+|+|+.    .++.+++++|+++|++..
T Consensus       228 aL~~Aa~----~g~~evv~lL~~~ga~~~  252 (376)
T 2aja_A          228 AEIHEFE----YGEKYVNPFIARHVNRLK  252 (376)
T ss_dssp             HHHCTTT----TTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHH----CCCHHHHHHHHhcCcccc
Confidence            9999998    778889999999998754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=3.7e-24  Score=186.35  Aligned_cols=110  Identities=22%  Similarity=0.341  Sum_probs=105.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccC-CCCCcH
Q 015882           57 DNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATD-KEGNSL  134 (399)
Q Consensus        57 d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d-~~G~T~  134 (399)
                      +.+|.||||+|+..|+.++++.| + +.+++.+|.+|+||||+|+..|+.+++++|++.|++      +|.+| .+|+||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~~g~tp  113 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCSSSSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCCCH
Confidence            56889999999999999999999 8 899999999999999999999999999999999887      77888 889999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882          135 LHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       135 LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      ||+|+..|+.+++++|++.|+    +++.+|.+|+||+|+|++
T Consensus       114 L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          114 LHMAAGYVRPEVVEALVELGA----DIEVEDERGLTALELARE  152 (183)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTC----CTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHcCC----CCcCCCCCCCCHHHHHHH
Confidence            999999999999999999999    999999999999999996

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=3.8e-22  Score=192.34  Aligned_cols=147  Identities=16%  Similarity=0.075  Sum_probs=118.7

Q ss_pred             cCCCChHhhHHHhc-CCHHHHHHHhhcCCCCCCccCC--CCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHH
Q 015882           22 NQNGCTSMHRAPVE-GDGEMIHCLGKLDPQTGSVVED--NGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALI   97 (399)
Q Consensus        22 d~~G~TpLh~Aa~~-G~~~~v~~Ll~~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh   97 (399)
                      +..+.||||.|+.. |+.++++.|+++|+++  +..+  .+|.||||+|+..|+.+++++| +++++++..|.+|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv--n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV--NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC--CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            44567899999999 9999999999999999  6777  8999999999999999999999 999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882           98 LAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus        98 ~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      +|+..|+.+++++|++.|++      ++.+|.+|+||||+|+..++.+++++|++.+. ...+....+..+.|+++++..
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~-~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGAD------LGARDSEGRDPLTIAMETANADIVTLLRLAKM-REAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCC------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CcccccccCCCCCCHHHHHHH
Confidence            99999999999999999887      78999999999999999999999999998875 222455667888999998875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=9.7e-23  Score=182.66  Aligned_cols=169  Identities=22%  Similarity=0.232  Sum_probs=132.9

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCC-------------CCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCC
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQT-------------GSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSES   84 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~-------------~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~   84 (399)
                      ...+.++.++.+++...|+...+..+.+.+.-.             .....+.+|.||||+|+..|+.++++.| +.+.+
T Consensus        19 al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   98 (222)
T 3ehr_A           19 ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG   98 (222)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             EeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCC
Confidence            345677888888888888764443322211000             0023456789999999999999999999 99999


Q ss_pred             ccccccCCchHHHHHHHcCCHHHHHHHHHh-hhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccc
Q 015882           85 LAKLTSDAETALILAVKSSQIDAFKILVEE-TKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDS  163 (399)
Q Consensus        85 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~  163 (399)
                      ++.+|..|+||||+|+.+|+.+++++|++. +++      +|.+|.+|+||||+|+..|+.+++++|++.|+    +++.
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~  168 (222)
T 3ehr_A           99 VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA----RTDL  168 (222)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC----CSCC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcc
Confidence            999999999999999999999999999997 666      88999999999999999999999999999999    9999


Q ss_pred             cccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          164 KNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       164 ~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      +|.+|+||+|+|+.    .+..++++.|++.|+.....
T Consensus       169 ~~~~g~t~l~~A~~----~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          169 RNIEKKLAFDMATN----AACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             CCTTSCCHHHHCCS----HHHHHHHC------------
T ss_pred             ccCCCCCHHHHhcc----hhHHHHHHHHhccchhhhcc
Confidence            99999999999997    78999999999999887654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=8.4e-21  Score=176.41  Aligned_cols=165  Identities=23%  Similarity=0.265  Sum_probs=138.1

Q ss_pred             ccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCC---c---------------------cC-----CCCCCcHHHHHHHcC
Q 015882           21 QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGS---V---------------------VE-----DNGLTTPLHRAAVNG   71 (399)
Q Consensus        21 ~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~---~---------------------~~-----d~~g~tpLh~Aa~~g   71 (399)
                      .|..+.++|+.+...|+..+.+.+...-+....   .                     ..     +....++||.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            577889999999999998776666433221100   0                     00     011236899999999


Q ss_pred             CHHHHHHh-hccCC------ccccccCCchHHHHHHHc---CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHc
Q 015882           72 DTGMIREI-ACSES------LAKLTSDAETALILAVKS---SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALN  141 (399)
Q Consensus        72 ~~~iv~~L-~~~~~------~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~  141 (399)
                      +.+.++.+ ..+.+      ++..|..|+||||+|+..   |+.+++++|++.|++      +|.+|.+|+||||+|+..
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~------in~~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTGKGSTALHYCCLT  215 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC------TTCCCTTCCCHHHHHHHT
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC------ccccCCCCCCHHHHHHHc
Confidence            99999988 66666      445588899999999999   899999999999887      889999999999999999


Q ss_pred             CcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          142 KLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       142 ~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      |+.+++++|++.|+    +++.+|.+|+||||+|+.    .++.+++++|+++|+...
T Consensus       216 g~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          216 DNAECLKLLLRGKA----SIEIANESGETPLDIAKR----LKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             TCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCC----CCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            99999999999999    999999999999999998    788999999999998654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=3.9e-23  Score=188.42  Aligned_cols=139  Identities=19%  Similarity=0.258  Sum_probs=124.9

Q ss_pred             CCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHH
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVK  101 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~  101 (399)
                      ..|.+++..++..|+.+.+..+...+.+     .+.+|.||||+|++.|+.++++.| . +.+++.+|.+|+||||+|+.
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD-----VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAG   86 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHH-----HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHH
T ss_pred             CCCccHHHHHHHcCCCcccccccccccc-----cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            5677888888888887776665554433     356799999999999999999999 8 88999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccccccccC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882          102 SSQIDAFKILVEETKRHNREHLFNATD-KEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus       102 ~g~~~~v~~Ll~~~~~~~~~~lin~~d-~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      +|+.+++++|++.|++      +|.+| ..|+||||+|+..|+.+++++|+++|+    +++.+|.+|+||+|+|+.
T Consensus        87 ~g~~~~v~~Ll~~ga~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGAD------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTALELARE  153 (244)
T ss_dssp             HTCHHHHHHHHHTTCC------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCcHHHHHHH
Confidence            9999999999999887      77888 889999999999999999999999999    999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=2.7e-23  Score=201.07  Aligned_cols=139  Identities=9%  Similarity=0.044  Sum_probs=113.5

Q ss_pred             hHHHHHHHhcCCcc-ccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCC-ccCCCCCCcHHHHHHHcCCHHHHHHh-
Q 015882            3 NELIELAKKDKVQE-KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGS-VVEDNGLTTPLHRAAVNGDTGMIREI-   79 (399)
Q Consensus         3 ~e~i~~l~~~~~~~-l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~-~~~d~~g~tpLh~Aa~~g~~~iv~~L-   79 (399)
                      .++++.|.+...+. .....|..|.||||+|+..|+.++|++|+++|++... +..+.+ .||||+|+..|+.+++++| 
T Consensus       105 ~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll  183 (376)
T 2aja_A          105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLC  183 (376)
T ss_dssp             HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHH
Confidence            36778887665432 2334566789999999999999999999999976310 223333 8999999999999999999 


Q ss_pred             hccCCccc--cccCCchHHHHHH-HcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           80 ACSESLAK--LTSDAETALILAV-KSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        80 ~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      +.+++++.  .|.+|+||||+|+ .+|+.+++++|++.|+.             |+||||+|++.|+.+++++|++.|+
T Consensus       184 ~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------------~~taL~~Aa~~g~~evv~lL~~~ga  249 (376)
T 2aja_A          184 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------------LAYAEIHEFEYGEKYVNPFIARHVN  249 (376)
T ss_dssp             HSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------------HHHHHHCTTTTTTTTHHHHHHHHHH
T ss_pred             HcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------------cchHHHHHHHCCCHHHHHHHHhcCc
Confidence            88988887  8899999999999 99999999999986532             7899999999999999999998765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=6.7e-21  Score=177.09  Aligned_cols=125  Identities=18%  Similarity=0.091  Sum_probs=117.0

Q ss_pred             CChHhhHHHhcCCHHHHHHHhhcCCCCC----CccCCCCCCcHHHHHHHc---CCHHHHHHh-hccCCccccccCCchHH
Q 015882           25 GCTSMHRAPVEGDGEMIHCLGKLDPQTG----SVVEDNGLTTPLHRAAVN---GDTGMIREI-ACSESLAKLTSDAETAL   96 (399)
Q Consensus        25 G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~----~~~~d~~g~tpLh~Aa~~---g~~~iv~~L-~~~~~~~~~d~~g~t~L   96 (399)
                      ..++||.|+..|+.+.++.+++.|.++.    .+..|..|.||||+|+..   |+.+++++| +.+++++.+|.+|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            3579999999999999999999999863    145588999999999999   899999999 99999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882           97 ILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      |+|+.+|+.+++++|++.|++      ++.+|.+|+||||+|+..|+.+++++|++.|+
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS------IEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999888      88999999999999999999999999999988

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=6.7e-21  Score=146.61  Aligned_cols=91  Identities=26%  Similarity=0.393  Sum_probs=69.1

Q ss_pred             CCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHc
Q 015882           24 NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKS  102 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~  102 (399)
                      +|+||||+|+..|+.+++++|++.|+++  +.+|.+|.||||+|+..|+.+++++| +.+++++.+|.+|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            4777888888888888888888877777  67777777777777777777777777 77777777777777777777777


Q ss_pred             CCHHHHHHHHHhhh
Q 015882          103 SQIDAFKILVEETK  116 (399)
Q Consensus       103 g~~~~v~~Ll~~~~  116 (399)
                      |+.+++++|++.|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            77777777777654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=2.9e-20  Score=143.02  Aligned_cols=91  Identities=34%  Similarity=0.500  Sum_probs=86.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHH
Q 015882           59 GLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHL  137 (399)
Q Consensus        59 ~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHl  137 (399)
                      +|+||||+|+..|+.+++++| +.+.+++.+|.+|+||||+|+..|+.+++++|++.|++      ++.+|.+|+||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHH
Confidence            489999999999999999999 99999999999999999999999999999999999887      78999999999999


Q ss_pred             HHHcCcHHHHHHHHhCCC
Q 015882          138 AALNKLIVIVNLLLEGSS  155 (399)
Q Consensus       138 A~~~~~~~iv~~Ll~~g~  155 (399)
                      |+..|+.+++++|++.|+
T Consensus        75 A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCC
Confidence            999999999999999987

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=7.6e-21  Score=152.11  Aligned_cols=107  Identities=23%  Similarity=0.271  Sum_probs=94.0

Q ss_pred             cccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHH
Q 015882           20 TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALIL   98 (399)
Q Consensus        20 ~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~   98 (399)
                      .+|.+|+||||+|+..|+.++++.|+++++++  +.+|..|.||||+|+..|+.+++++| +.+++++.+|.+|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS--SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            46788999999999999999999999999888  78899999999999999999999999 8888888889999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccccccccCCCCCcH
Q 015882           99 AVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSL  134 (399)
Q Consensus        99 A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~  134 (399)
                      |+..|+.+++++|++.|++      +|.++..|.||
T Consensus        82 A~~~~~~~~~~~Ll~~ga~------~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGAD------VNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSS------HHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCC------CCcCCcccccc
Confidence            9999999999999988877      77888888876

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=5.2e-20  Score=173.00  Aligned_cols=127  Identities=28%  Similarity=0.369  Sum_probs=117.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHh-hccCCccc------cccCCchHHHHHHHc---CCHHHHHHHHHhhhcccccccccccCC
Q 015882           60 LTTPLHRAAVNGDTGMIREI-ACSESLAK------LTSDAETALILAVKS---SQIDAFKILVEETKRHNREHLFNATDK  129 (399)
Q Consensus        60 g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~------~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~lin~~d~  129 (399)
                      +.++||.|+..|+.+.++.| ..+.+++.      .|..|+||||+|+..   ++.+++++|++.|++      +|.+|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad------vn~~d~  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH------LDAKAA  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC------TTCCCT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC------CCCCCC
Confidence            44679999999999999999 88888887      688999999999997   899999999999887      889999


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          130 EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       130 ~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+.    .++.+++++|+++|++...
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~G~TpL~~A~~----~~~~~iv~~Ll~~ga~~g~  287 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRA----LVGTVNEAGETALDIARK----KHHKECEELLEQAQAGTFA  287 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC----CCSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHTTS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999    999999999999999998    7888999999999988543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.3e-20  Score=150.72  Aligned_cols=108  Identities=27%  Similarity=0.351  Sum_probs=101.1

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCc
Q 015882           55 VEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNS  133 (399)
Q Consensus        55 ~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T  133 (399)
                      .+|.+|.||||+|+..|+.+++++| +.+.+++.+|..|+||||+|+..|+.+++++|++.|++      ++.+|.+|+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~d~~g~t   77 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD------VNARSKDGNT   77 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC------TTCCCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC------CcccCCCCCC
Confidence            5789999999999999999999999 88999999999999999999999999999999999877      7899999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHH
Q 015882          134 LLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL  172 (399)
Q Consensus       134 ~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl  172 (399)
                      |||+|+..++.+++++|++.|+    ++|.++..|.||-
T Consensus        78 pl~~A~~~~~~~~~~~Ll~~ga----~~n~~~~~~~~~~  112 (115)
T 2l6b_A           78 PEHLAKKNGHHEIVKLLDAKGA----DVNARSWGSSHHH  112 (115)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTSS----SHHHHSCCCC---
T ss_pred             HHHHHHHCCCHHHHHHHHHcCC----CCCcCCccccccc
Confidence            9999999999999999999999    9999999999885

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=9.1e-20  Score=175.72  Aligned_cols=130  Identities=20%  Similarity=0.277  Sum_probs=118.5

Q ss_pred             CCCCCCcHHHHHHHc-CCHHHHHHh-hccCCccccc--cCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCC
Q 015882           56 EDNGLTTPLHRAAVN-GDTGMIREI-ACSESLAKLT--SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEG  131 (399)
Q Consensus        56 ~d~~g~tpLh~Aa~~-g~~~iv~~L-~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G  131 (399)
                      .+..+.||||.|+.. |+.++++.| ..+++++..+  .+|+||||+|+..|+.+++++|++.|++      +|.+|.+|
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad------vn~~d~~G  268 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN------VNQADSAG  268 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTS
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCCCCCC
Confidence            344566899999999 999999999 9999999998  8899999999999999999999999887      88999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          132 NSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       132 ~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      +||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+.    .++.+++++|++++....
T Consensus       269 ~TpLh~A~~~g~~~~v~~LL~~Ga----d~~~~d~~G~TpL~~A~~----~g~~~iv~lLl~~~~~~~  328 (368)
T 3jue_A          269 RGPLHHATILGHTGLACLFLKRGA----DLGARDSEGRDPLTIAME----TANADIVTLLRLAKMREA  328 (368)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHcCcHHHHHHHHHCcC----CCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCcc
Confidence            999999999999999999999999    999999999999999998    788999999999886544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=2.6e-18  Score=136.42  Aligned_cols=96  Identities=19%  Similarity=0.248  Sum_probs=78.2

Q ss_pred             CccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCC
Q 015882           14 VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDA   92 (399)
Q Consensus        14 ~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g   92 (399)
                      .|......|.+|.||||+|+..|+.+++++|+++++++  +.+|..|.||||+|+..|+.+++++| ..+++++.+|..|
T Consensus        13 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i--~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g   90 (110)
T 2zgd_A           13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV--AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG   90 (110)
T ss_dssp             ---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Confidence            34556777889999999999999999999999999888  78888999999999999999999998 8888888888889


Q ss_pred             chHHHHHHHcCCHHHHHHH
Q 015882           93 ETALILAVKSSQIDAFKIL  111 (399)
Q Consensus        93 ~t~Lh~A~~~g~~~~v~~L  111 (399)
                      +||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999888875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=3.2e-17  Score=130.10  Aligned_cols=93  Identities=32%  Similarity=0.477  Sum_probs=51.8

Q ss_pred             ccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccccc
Q 015882           85 LAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSK  164 (399)
Q Consensus        85 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~  164 (399)
                      ....|.+|+|+||.|+..|+.+++++|++.+++      +|.+|..|+||||+|+..|+.+++++|++.|+    +++.+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga----~~~~~   86 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA----DVXAQ   86 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----Ccccc
Confidence            344455566666666666666666666655444      45555666666666666666666666666655    55666


Q ss_pred             ccCCCCHHHHHHhcCCCCcHHHHHHHH
Q 015882          165 NNQGQTALDICKANSQDSVSNEIGSIL  191 (399)
Q Consensus       165 n~~g~Tpl~~a~~~~~~~~~~~i~~~L  191 (399)
                      |..|+||+|+|+.    .++.+++++|
T Consensus        87 d~~g~tpl~~A~~----~~~~~~~~~L  109 (110)
T 2zgd_A           87 DKFGKTAFDISID----NGNEDLAEIL  109 (110)
T ss_dssp             CTTSCCHHHHHHH----HTCHHHHHHH
T ss_pred             ccCCCcHHHHHHH----cCCHHHHHHh
Confidence            6666666666665    4455555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 3e-13
 Identities = 44/203 (21%), Positives = 69/203 (33%), Gaps = 34/203 (16%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
              NG T +H A  +   E+   L  L     +  E     TPLH AA  G   M+  + 
Sbjct: 194 PAWNGYTPLHIAAKQNQVEVARSL--LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 251

Query: 81  CSESLAKLT-SDAETALILAVKSSQIDAFKILVEE------------------------- 114
             ++   L      T L L  +   +    +L++                          
Sbjct: 252 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 311

Query: 115 --TKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
                   +   NA  K G S LH AA      IV LLL+  +S     +  ++ G T L
Sbjct: 312 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS----PNEVSSDGTTPL 367

Query: 173 DICKANSQDSVSNEIGSILERAA 195
            I K     SV++ +  + +  +
Sbjct: 368 AIAKRLGYISVTDVLKVVTDETS 390

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 6e-09
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 62  TPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNR 120
           TPLH A+  G   +++  +    S        ET L +A ++   +  K L++       
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ------N 55

Query: 121 EHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC 175
           +   NA  K+  + LH AA      +V LLLE +++  +   + +     A    
Sbjct: 56  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 110

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 9e-08
 Identities = 46/263 (17%), Positives = 76/263 (28%), Gaps = 37/263 (14%)

Query: 27  TSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE-IACSESL 85
           T +H A   G   ++  L  L       V +  + TPLH AA  G T + +  +     +
Sbjct: 2   TPLHVASFMGHLPIVKNL--LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 86  AKLTSDAETALILAVKSSQIDAFKILVEE---------------------------TKRH 118
                D +T L  A +    +  K+L+E                                
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 119 NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDI-CKA 177
            +E       K+G + LH+AA    + +  LLLE  +      ++    G T L +    
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA----HPNAAGKNGLTPLHVAVHH 175

Query: 178 NSQDSVS--NEIGSILERAAARKQTAPVSELPIDTTSGFWIPIETKNVILMVLGMIATAF 235
           N+ D V      G      A    T        +        ++             T  
Sbjct: 176 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL 235

Query: 236 FAATCDLPNSFVKGNHPQGELNN 258
             A  +     V     +    N
Sbjct: 236 HLAAQEGHAEMVALLLSKQANGN 258

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 23/169 (13%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVE--DNGLTTPLHRAAVNGDTGMIRE 78
            +  G + + +A    +         L       +   D+   T LH   +         
Sbjct: 136 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA 195

Query: 79  IA--------------CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLF 124
            A               +  +   T++ E+         +    + L     +    ++ 
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL---DLKWIIANML 252

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALD 173
           NA D  G++ L++AA    I IV+ LL+  +         N  G   +D
Sbjct: 253 NAQDSNGDTCLNIAARLGNISIVDALLDYGAD----PFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 9/108 (8%)

Query: 48  DPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDA 107
            P      +   L   L R                 SL   +S+  +    + +  Q  +
Sbjct: 27  SPVVNDNEQKMKLEAFLQRLLFPEIQ------EMPTSLNNDSSNRNSEGGSSNQQQQHVS 80

Query: 108 FKILVEETKRHNREHLFN---ATDKEGNSLLHLAALNKLIVIVNLLLE 152
           F  L++E          N     D+ GN+ LH       + +V  L++
Sbjct: 81  FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 12/121 (9%), Positives = 34/121 (28%), Gaps = 10/121 (8%)

Query: 23  QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACS 82
                +   A  +   +++                N   +  +         ++  +   
Sbjct: 186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 245

Query: 83  ESLAKL----TSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLA 138
             +A +     S+ +T L +A +   I     L++    +  +      +K G   +   
Sbjct: 246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD----YGAD--PFIANKSGLRPVDFG 299

Query: 139 A 139
           A
Sbjct: 300 A 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 7e-08
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 123 LFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC 175
           +F    ++G++ LHLA +++    ++ LL   S+    +D +N+ GQTAL + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 6/160 (3%)

Query: 22  NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSV-VEDNGLTTPLHRAAVNGDTGMIREI- 79
            ++G T++H A +      +  L         + ++++   T LH AA+ G+   + ++ 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 80  ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNRE----HLFNATDKEGNSLL 135
           A    +        TAL LA +        +L++    H R+    +L  + D   ++  
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 136 HLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC 175
             AA++      N          +Q++++N  G T L + 
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA 165

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 17/152 (11%)

Query: 55  VEDNGLTTPLHRAAVNGDTGMIREI----ACSESLAKLTSDAETALILAVKSSQIDAFKI 110
           V ++G T  LH A ++     +  +    A  E L       +TAL LA    +    + 
Sbjct: 5   VTEDGDT-ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 111 LVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSS------DIIQIDSK 164
           L               T        HLA   +      +LL+   S      D     S+
Sbjct: 64  LYAAGAGVLVAERGGHTAL------HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 165 NNQGQTALDICKANSQDSVSNEIGSILERAAA 196
           +    T+      +SQ +  NE     E    
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 85  LAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALN 141
              +T D +TAL LAV          L+  +  H      +  +  G + LHLAA+ 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---YLDLQNDLGQTALHLAAIL 55

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
            NQNGCT +H A  +   E+   L  L+       +D+   T +HRAA  G+  MI  + 
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVML--LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL 156

Query: 81  CSES-LAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
             ++      ++  T L LA    +++  K+LV       +       +KE  + L +A 
Sbjct: 157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS------QGASIYIENKEEKTPLQVAK 210

Query: 140 LNKLIVIVNLLLEG 153
              L +I+  ++EG
Sbjct: 211 -GGLGLILKRMVEG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 57  DNGLTTPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEET 115
           +    TPLH AA      +    +    +         TA+  A     +    IL    
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL---- 155

Query: 116 KRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDIC 175
                +   N  D EGN+ LHLA   + +    LL+   +S    I  +N + +T L + 
Sbjct: 156 --LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQVA 209

Query: 176 KANSQDSV 183
           K      +
Sbjct: 210 KGGLGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 26  CTS---MHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIACS 82
           C S   +      G  E +      D    +  + +   T LH A   G T ++  +   
Sbjct: 1   CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQL 59

Query: 83  ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNK 142
                   DA  + +    S+  D     +       +    NA ++ G + LH AA   
Sbjct: 60  GVPVNDKDDAGWSPLHIAASAGRDEIVKAL-----LGKGAQVNAVNQNGCTPLHYAASKN 114

Query: 143 LIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN 178
              I  +LLEG ++     D+K++   TA+    A 
Sbjct: 115 RHEIAVMLLEGGAN----PDAKDHYEATAMHRAAAK 146

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 3/127 (2%)

Query: 57  DNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETALILAVKSSQIDAFKILVEETK 116
             G  T L  AA  G   +++ +           D      L       D   +      
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 117 RHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK 176
             +     N   + G + L LA   K + +V  LLE    +   I+  ++ G+TAL +  
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAV 261

Query: 177 ANSQDSV 183
                 +
Sbjct: 262 ELKLKKI 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 5e-06
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 13/148 (8%)

Query: 11  KDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVN 70
           + K +E      + G T++  A  +G  E++  L  LD     V   + +       A+ 
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL--LDEMGADVNACDNMGRNALIHALL 191

Query: 71  GDTGMIREIACSESLAK------LTSDAETALILAVKSSQIDAFKILVEETKRHNREHLF 124
                  E      L             +T LILAV+   +   + L+E+          
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-----I 246

Query: 125 NATDKEGNSLLHLAALNKLIVIVNLLLE 152
           N TD +G + L LA   KL  I  LL +
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 10/184 (5%)

Query: 18  DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
           +  + + G T +H A      +++  L  L      V+      TP   AA+ G   +++
Sbjct: 32  NFQEEEGGWTPLHNAVQMSREDIVELL--LRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

Query: 78  EIACSE-SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNR----EHLFNATDKEGN 132
                   + +      TA + A    ++ A K L +     N     +       K G 
Sbjct: 90  LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 133 SLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILE 192
           + L  AA    + ++ +LL+   +D   +++ +N G+ AL     +S DS    I  +L 
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGAD---VNACDNMGRNALIHALLSSDDSDVEAITHLLL 206

Query: 193 RAAA 196
              A
Sbjct: 207 DHGA 210

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 130 EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN 178
           +G++ LH+A +   +  V+ L+        ++D  NN  QT L +    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 127 TDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNE 186
            D++G + + LAA    I +V  L++  +S    +++ +    TA  + +AN+       
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHH----N 268

Query: 187 IGSILERA 194
           I  I +R 
Sbjct: 269 IVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 12/91 (13%)

Query: 93  ETALILAVKSSQIDAFKILVEETKRHNREHLFNATD-KEGNSLLHLAALNKLIVIVNLLL 151
           E+ + L  +++   A    +            N  D +   ++LH  A N        L+
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR-------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLI 53

Query: 152 EGSSSDIIQ----IDSKNNQGQTALDICKAN 178
              + + I     +++ +    T L +    
Sbjct: 54  VHEAKECIAAGADVNAMDCDENTPLMLAVLA 84

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 62  TPLHRAAVNGDTGMIREIACSESLAKLTSDAE--TALILAVKSSQIDAFKILVEETKRHN 119
           T LH AA   +  +++ +   +   K   D +  T ++LA +  +I+    L++      
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ------ 242

Query: 120 REHLFNATDKEGNSLLHLAALNKLIVIVNLLLE 152
           +     A D   ++   LA  N    IV++   
Sbjct: 243 QGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 20  TQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIRE- 78
           ++   G T++H A    +  ++  L           +++G T P+  AA  G   ++   
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT-PIMLAAQEGRIEVVMYL 240

Query: 79  IACSESLAKLTSDAETALILAVKSSQIDAFKIL 111
           I    S+  + +   TA  LA  ++  +   I 
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 17/158 (10%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
            N  G T +  A  E   E++                      L  A    ++G I ++ 
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194

Query: 81  CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAL 140
            ++          TAL +A      +  K+L          +  N  D +G + LH AA 
Sbjct: 195 HAK-------SGGTALHVAAAKGYTEVLKLL------IQARYDVNIKDYDGWTPLHAAAH 241

Query: 141 NKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN 178
                   +L+E        +++ N  GQTA D+   +
Sbjct: 242 WGKEEACRILVENLCD----MEAVNKVGQTAFDVADED 275

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 130 EGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTAL 172
           +G+S LHLA +++   +   ++     D+  ++ +NN  QT L
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 16/132 (12%), Positives = 31/132 (23%), Gaps = 12/132 (9%)

Query: 21  QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIA 80
                  +       G+  +   +         V     +      +  +G   ++ +  
Sbjct: 219 CPVMLAYAEIHEFEYGEKYVNPFI------ARHVNRLKEMHDAFKLSNPDGVFDLVTKSE 272

Query: 81  CSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAL 140
           C +            LI       +D  + L+                 + N LL LA  
Sbjct: 273 CLQGF-----YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT-ATIPGDANELLRLALR 326

Query: 141 NKLIVIVNLLLE 152
                   LLL 
Sbjct: 327 LGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 9/114 (7%)

Query: 62  TPLHRAAVNGDTGMIRE----IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKR 117
                AA+ G +  +      +   E +  + ++   A  LA ++  +     L E    
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 118 HNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE-GSSSDIIQIDSKNNQGQT 170
                       E      LAA N  + ++N L E   +     I ++N     
Sbjct: 152 EIMAM----IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 201

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 91  DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLL 150
            +E    +A  +    A   L                  E      LAA N  + ++N L
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHLHVLNRL 145

Query: 151 LEGSSSDIIQIDSKNNQGQTALDIC 175
            E + ++I+       +   A  + 
Sbjct: 146 CELAPTEIMA--MIQAENYHAFRLA 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.84
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.79

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=236.93  Aligned_cols=182  Identities=19%  Similarity=0.194  Sum_probs=158.4

Q ss_pred             hHHHHHHHhcC-CccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-h
Q 015882            3 NELIELAKKDK-VQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-A   80 (399)
Q Consensus         3 ~e~i~~l~~~~-~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~   80 (399)
                      .+++++|.+.. .+..++.+|.+|.||||+|+..|+.++++.|+++|+++  +.+|.+|.||||+|+..|+.++++.| .
T Consensus        22 ~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i--~~~d~~g~tpL~~A~~~~~~~~~~~Ll~   99 (255)
T d1oy3d_          22 EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTALHLACRVRAHTCACVLLQ   99 (255)
T ss_dssp             HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTSCCHHHHHTTTTCHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc--cccccccchhhhhhhccCchHHHHHHHh
Confidence            46778776543 45668889999999999999999999999999999999  88999999999999999999999887 2


Q ss_pred             cc-----------------------------------------------CCccccccCCchHHHHHHHcCCHHHHHHHHH
Q 015882           81 CS-----------------------------------------------ESLAKLTSDAETALILAVKSSQIDAFKILVE  113 (399)
Q Consensus        81 ~~-----------------------------------------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  113 (399)
                      ..                                               ..++.+|.+|+||||+|+++++.+++++|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~  179 (255)
T d1oy3d_         100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD  179 (255)
T ss_dssp             SCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhc
Confidence            11                                               1123445779999999999999999999999


Q ss_pred             hhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHH
Q 015882          114 ETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILER  193 (399)
Q Consensus       114 ~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~  193 (399)
                      .+.+.     .+.++..|+||||+|++.++.+++++|+++|+    +++.+|++|+||||+|+.    .++.+++++|++
T Consensus       180 ~~~~~-----~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga----din~~d~~g~t~L~~A~~----~~~~~i~~~Ll~  246 (255)
T d1oy3d_         180 AGADL-----NKPEPTCGRTPLHLAVEAQAASVLELLLKAGA----DPTARMYGGRTPLGSALL----RPNPILARLLRA  246 (255)
T ss_dssp             HTCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHT----SSCHHHHHHHHH
T ss_pred             ccccc-----cccccccccccccccccccHHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHH----CCCHHHHHHHHH
Confidence            87762     34567889999999999999999999999999    999999999999999998    888999999999


Q ss_pred             ccCccC
Q 015882          194 AAARKQ  199 (399)
Q Consensus       194 ~ga~~~  199 (399)
                      +||+..
T Consensus       247 ~Ga~~~  252 (255)
T d1oy3d_         247 HGAPEP  252 (255)
T ss_dssp             TTCCCC
T ss_pred             cCCCCC
Confidence            999744

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-29  Score=222.53  Aligned_cols=179  Identities=18%  Similarity=0.228  Sum_probs=163.2

Q ss_pred             HHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccC
Q 015882            5 LIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSE   83 (399)
Q Consensus         5 ~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~   83 (399)
                      .++.+.... +..++.+|.+|+||||+|+..|+.++++++++.+.+.  ...+..+.++++.++..|+.+++++| ..+.
T Consensus        18 ~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~   94 (223)
T d1uoha_          18 ELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV--NDKDDAGWSPLHIAASAGRDEIVKALLGKGA   94 (223)
T ss_dssp             HHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS--CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc--ccccccccccccccccccccchhHHHhccCc
Confidence            343333333 5668999999999999999999999999999999888  67888899999999999999999999 8889


Q ss_pred             CccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccc
Q 015882           84 SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDS  163 (399)
Q Consensus        84 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~  163 (399)
                      +++.+|.+|+||||+|+.+|+.+++++|++.|.+      ++.+|..|.||||+|+..++.+++++|++.+.    +++.
T Consensus        95 d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d------~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~----~i~~  164 (223)
T d1uoha_          95 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKA----STNI  164 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCC
T ss_pred             eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCccchhhhhcCCcchhhhhccccc----eeee
Confidence            9999999999999999999999999999999877      77899999999999999999999999999998    8999


Q ss_pred             cccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          164 KNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       164 ~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +|.+|+||||+|+.    .++.+++++|+++|++...
T Consensus       165 ~d~~g~TpL~~Aa~----~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         165 QDTEGNTPLHLACD----EERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             CCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             ccCCCCceeccccc----cCcHHHHHHHHHCCCCCCC
Confidence            99999999999998    7789999999999998774

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.9e-29  Score=228.67  Aligned_cols=174  Identities=20%  Similarity=0.287  Sum_probs=153.2

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHH
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTG-SVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETAL   96 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~-~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~L   96 (399)
                      ...|++|+||||+||..|+.+++++|++++++.. .+.+|..|.||||+|+..|+.+++++| +.+++++..|.+|+|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            3567899999999999999999999999987742 167889999999999999999999999 99999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcc-----------------------------------------cccccccccCCCCCcHH
Q 015882           97 ILAVKSSQIDAFKILVEETKRH-----------------------------------------NREHLFNATDKEGNSLL  135 (399)
Q Consensus        97 h~A~~~g~~~~v~~Ll~~~~~~-----------------------------------------~~~~lin~~d~~G~T~L  135 (399)
                      |+|+..++.+++++|++.....                                         .....++.+|.+|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            9999999999999997654321                                         02345788999999999


Q ss_pred             HHHHHcCcHHHHHHHHhCCCCCccccc-ccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          136 HLAALNKLIVIVNLLLEGSSSDIIQID-SKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       136 HlA~~~~~~~iv~~Ll~~g~~~~v~~~-~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      |+|++.++.+++++|++.++    +.+ ..+..|.||||+|++    .++.+++++|+++|++.+.
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~TpL~~A~~----~~~~~~v~~Ll~~gadin~  220 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGA----DLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPTA  220 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             cccccccccccccchhcccc----ccccccccccccccccccc----ccHHHHHHHHHHCCCCCCC
Confidence            99999999999999999998    555 456889999999998    7789999999999988764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=212.54  Aligned_cols=172  Identities=22%  Similarity=0.241  Sum_probs=156.9

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      .|+++++......  ....+..+.++++.|+..|+.++++.|+++++++  +.+|.+|.||||+|+..|+.+++++| +.
T Consensus        50 ~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~--~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~  125 (223)
T d1uoha_          50 TEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV--NAVNQNGCTPLHYAASKNRHEIAVMLLEG  125 (223)
T ss_dssp             HHHHHHHHHHTCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             hcccccccccccc--cccccccccccccccccccccchhHHHhccCcee--EeeCCCCCchhhHHHHcCCHHHHHHHHHC
Confidence            3677777665533  4555677899999999999999999999999998  89999999999999999999999999 99


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccc
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQI  161 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~  161 (399)
                      +.+++.+|..|.||||.|+..++.+++++|.+.+.+      ++.+|.+|+||||+|++.|+.+++++|++.|+    ++
T Consensus       126 g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~------i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga----d~  195 (223)
T d1uoha_         126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS------TNIQDTEGNTPLHLACDEERVEEAKLLVSQGA----SI  195 (223)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CS
T ss_pred             CCCCCCcCCCCCccchhhhhcCCcchhhhhccccce------eeeccCCCCceeccccccCcHHHHHHHHHCCC----CC
Confidence            999999999999999999999999999999988766      88999999999999999999999999999999    99


Q ss_pred             cccccCCCCHHHHHHhcCCCCcHHHHHHHHHH
Q 015882          162 DSKNNQGQTALDICKANSQDSVSNEIGSILER  193 (399)
Q Consensus       162 ~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~  193 (399)
                      +.+|.+|+||+|+|.     .++.+++++|++
T Consensus       196 ~~~d~~g~tpl~~A~-----~~~~~i~~~Ll~  222 (223)
T d1uoha_         196 YIENKEEKTPLQVAK-----GGLGLILKRMVE  222 (223)
T ss_dssp             CCCCTTSCCHHHHCC-----TTHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHH-----CCCHHHHhcccC
Confidence            999999999999984     578889998875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.8e-28  Score=201.31  Aligned_cols=153  Identities=22%  Similarity=0.279  Sum_probs=145.1

Q ss_pred             hHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCH
Q 015882           27 TSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQI  105 (399)
Q Consensus        27 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~  105 (399)
                      +|||+||..|+.++|+.|+++|+++  +.+|.+|.||||+|+ .|+.+++++| +++++++.++.+|.++++.++.+++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~--n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc--CccCCcccccccccc-cccccccccccccccccccccccCccccccccccccc
Confidence            8999999999999999999999999  899999999999886 7999999999 99999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHH
Q 015882          106 DAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSN  185 (399)
Q Consensus       106 ~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~  185 (399)
                      +.++.+++.+.+      ++..|..|.+|||+|+..++.+++++|+++++   .+.+.+|.+|+||||+|++    .++.
T Consensus        80 ~~~~~l~~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~d~~g~TpL~~A~~----~~~~  146 (156)
T d1ihba_          80 DTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARL----YGRN  146 (156)
T ss_dssp             HHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC---CCTTCCCTTSCCHHHHHHH----TTCH
T ss_pred             cccccccccccc------cccccccccccccccccccccccccccccccc---ccccccCCCCCCHHHHHHH----cCCH
Confidence            999999998766      78899999999999999999999999999987   4789999999999999999    7889


Q ss_pred             HHHHHHHHcc
Q 015882          186 EIGSILERAA  195 (399)
Q Consensus       186 ~i~~~L~~~g  195 (399)
                      +++++|+++|
T Consensus       147 ~iv~~Ll~~G  156 (156)
T d1ihba_         147 EVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9999999987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-27  Score=212.21  Aligned_cols=183  Identities=20%  Similarity=0.162  Sum_probs=117.2

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCC-ccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGS-VVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~-~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      +.++.+.+.+ +..++.+|.+|+||||+|+..|+.+++++|+++|+++.. ...+..|.+|+|+++..+..++++.+ ..
T Consensus        14 ~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (229)
T d1ixva_          14 FKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR   92 (229)
T ss_dssp             HHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSS
T ss_pred             HHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccc
Confidence            4566665544 556899999999999999999999999999999988731 24566788888888887777777766 33


Q ss_pred             cC--CccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcc
Q 015882           82 SE--SLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDII  159 (399)
Q Consensus        82 ~~--~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v  159 (399)
                      +.  .....+..+.|+++.++..++.+++++|++.+.+      .+.+|.+|+||||+|+..++.+++++|++.+.   .
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~---~  163 (229)
T d1ixva_          93 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---S  163 (229)
T ss_dssp             SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC---C
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhccc------ccccCCCCCCccchhhhccccccccccccccc---c
Confidence            32  2333444555566666555566665555555443      44455555555555555555555555555543   2


Q ss_pred             cccccccCCCCHHHHHHhcCCCCcHHHHHHHHHH-ccCccCC
Q 015882          160 QIDSKNNQGQTALDICKANSQDSVSNEIGSILER-AAARKQT  200 (399)
Q Consensus       160 ~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~-~ga~~~~  200 (399)
                      +++.+|.+|+||||+|+.    .++.+++++|++ .|++...
T Consensus       164 ~in~~d~~g~TpLh~A~~----~~~~~~v~~Ll~~~gad~~~  201 (229)
T d1ixva_         164 AVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDL  201 (229)
T ss_dssp             CSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCC
T ss_pred             cccccccccCCchhhhcc----cccHHHHHHHHHhcCCCCCC
Confidence            455555555555555555    445555555553 3555443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=3.8e-28  Score=222.20  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=139.7

Q ss_pred             CCCChHhhHHHhcCCHHHHHHH--------hhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCc
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCL--------GKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAE   93 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~L--------l~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~   93 (399)
                      ..|+||||+||..|+.++|+.|        ++.|+++  +.+|.+|.||||+|+..|+.+++++| +++++++.+|.+|+
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv--n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~  108 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV--NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER  108 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc--cccCCCCCeeecccccccccccccccccccccccccccccc
Confidence            4599999999999999888776        4568888  88999999999999999999999999 88999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhhhcc-------------------------------------------------------
Q 015882           94 TALILAVKSSQIDAFKILVEETKRH-------------------------------------------------------  118 (399)
Q Consensus        94 t~Lh~A~~~g~~~~v~~Ll~~~~~~-------------------------------------------------------  118 (399)
                      ||||.|+..++.++++.+...+...                                                       
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            9999999999888777765543210                                                       


Q ss_pred             --------------------cccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhc
Q 015882          119 --------------------NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKAN  178 (399)
Q Consensus       119 --------------------~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~  178 (399)
                                          ......+.+|..|+||||+|++.|+.+++++|++.|+    +++.+|.+|+||||+|++ 
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga----din~~d~~G~T~L~~A~~-  263 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQLAQA-  263 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCSSSCCHHHHHHH-
T ss_pred             CccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC----CCCCcCCCCCCHHHHHHH-
Confidence                                0234567789999999999999999999999999999    999999999999999999 


Q ss_pred             CCCCcHHHHHHHHHH
Q 015882          179 SQDSVSNEIGSILER  193 (399)
Q Consensus       179 ~~~~~~~~i~~~L~~  193 (399)
                         .++.+++++|.+
T Consensus       264 ---~~~~~iv~lL~~  275 (277)
T d2fo1e1         264 ---NNHHNIVDIFDR  275 (277)
T ss_dssp             ---TTCHHHHHHHHT
T ss_pred             ---cCCHHHHHHHHH
Confidence               888999999975

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=211.94  Aligned_cols=169  Identities=22%  Similarity=0.191  Sum_probs=149.3

Q ss_pred             cccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccC------Ccccc
Q 015882           16 EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSE------SLAKL   88 (399)
Q Consensus        16 ~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~------~~~~~   88 (399)
                      ..++.+|.+|+||||+|+..|+.+++++|+++|+++  +.+|..|.||||.|+..|+.++++.| ..+.      .....
T Consensus        30 ~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~--~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (221)
T d1iknd_          30 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT  107 (221)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS--CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             CCcccCCCCCCccccccccccccccccccccccccc--cccccccccccccccccccccccchhhhhccccccccccccc
Confidence            346788999999999999999999999999999999  89999999999999999999999998 4322      23334


Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHHhhhccccccccccc-CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccC
Q 015882           89 TSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNAT-DKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQ  167 (399)
Q Consensus        89 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~-d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~  167 (399)
                      ...|.||||.|+..++.++++++++.+..      ++.+ +.+|+||||+|++.|+.+++++|++.|+    |++.+|.+
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~------~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~ga----d~~~~~~~  177 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQ  177 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC----CSCCCCTT
T ss_pred             ccccchhhhHHhhcCChhheeeecccCcc------cccccccCCCCccccccccccHHHHHHHHhcCC----cccccCCC
Confidence            45689999999999999999999998766      4444 5679999999999999999999999999    99999999


Q ss_pred             CCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          168 GQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       168 g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      |+||+|+|+.    .++.+++++|.+.+.+...
T Consensus       178 G~tpl~~A~~----~~~~~~~~~l~~~~~~~~~  206 (221)
T d1iknd_         178 GYSPYQLTWG----RPSTRIQQQLGQLTLENLQ  206 (221)
T ss_dssp             CCCGGGGCTT----SSCHHHHHHHHTTSCGGGS
T ss_pred             CCCHHHHHHH----CCCHHHHHHHHHcCCcccc
Confidence            9999999998    7889999999998776443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.6e-27  Score=196.24  Aligned_cols=150  Identities=21%  Similarity=0.219  Sum_probs=139.6

Q ss_pred             CChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcC
Q 015882           25 GCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSS  103 (399)
Q Consensus        25 G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g  103 (399)
                      ..||||.||+.|+.++|+.|+++|++.  + .|..|.||||+|+..++.++++.+ ..+......+..+.+++|.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCc--c-cccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            359999999999999999999999987  4 699999999999999999999999 777777777888999999999999


Q ss_pred             CHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCc
Q 015882          104 QIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSV  183 (399)
Q Consensus       104 ~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~  183 (399)
                      +.+.++++.+.+.+      .+.+|.+|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||+|+|+.    .+
T Consensus        79 ~~~~~~~l~~~~~~------~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga----d~~~~d~~g~Tpl~~A~~----~g  144 (153)
T d1awcb_          79 HANIVEVLLKHGAD------VNAKDMLKMTALHWATEHNHQEVVELLIKYGA----DVHTQSKFCKTAFDISID----NG  144 (153)
T ss_dssp             CHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TT
T ss_pred             cceeeecccccCCc------cccccccCchHHHhhhhcchhheeeecccccc----CCcccCCCCCCHHHHHHH----cC
Confidence            99999999988776      77899999999999999999999999999999    999999999999999999    88


Q ss_pred             HHHHHHHH
Q 015882          184 SNEIGSIL  191 (399)
Q Consensus       184 ~~~i~~~L  191 (399)
                      +.|++++|
T Consensus       145 ~~eiv~lL  152 (153)
T d1awcb_         145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHhC
Confidence            89999877

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=3.6e-27  Score=206.91  Aligned_cols=171  Identities=20%  Similarity=0.249  Sum_probs=151.7

Q ss_pred             hHHHHHHHhcCCcccccc-ccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHH-------
Q 015882            3 NELIELAKKDKVQEKDST-QNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTG-------   74 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~-~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~-------   74 (399)
                      .|+++.|.+....  ++. .|.+|+||||+||..|+.++++.|++.++++  +.++..+.++++.++..++.+       
T Consensus         2 ~~~v~~Ll~~g~d--in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1ot8a_           2 AQVISDLLAQGAE--LNATMDKTGETSLHLAARFARADAAKRLLDAGADA--NSQDNTGRTPLHAAVAADAMGVFQILLR   77 (209)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCC--cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc--cccccccccccccccccccccccccccc
Confidence            5889999887643  554 6899999999999999999999999999999  889999999999998777654       


Q ss_pred             ---------------------------HHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccc
Q 015882           75 ---------------------------MIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNA  126 (399)
Q Consensus        75 ---------------------------iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~  126 (399)
                                                 ..+.| ..+.+++.++..|+||||.++.+++.++++.+++.+.+      ++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~------~~~  151 (209)
T d1ot8a_          78 NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN------RDA  151 (209)
T ss_dssp             CTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------TTC
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccc------ccc
Confidence                                       33334 55666778888999999999999999999999998766      788


Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHH
Q 015882          127 TDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSIL  191 (399)
Q Consensus       127 ~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L  191 (399)
                      +|.+|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|++    .++.+++++|
T Consensus       152 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga----d~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         152 QDDKDETPLFLAAREGSYEASKALLDNFA----NREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             cccccccccchhccccHHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence            99999999999999999999999999999    999999999999999999    7889999876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.4e-27  Score=205.80  Aligned_cols=151  Identities=25%  Similarity=0.298  Sum_probs=118.3

Q ss_pred             CCCChHhhHHHhcCCHHHHHHHhh----cCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccC------
Q 015882           23 QNGCTSMHRAPVEGDGEMIHCLGK----LDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSD------   91 (399)
Q Consensus        23 ~~G~TpLh~Aa~~G~~~~v~~Ll~----~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~------   91 (399)
                      ++|+||||+||..|+.++++.|++    .|.++  +.+|.+|+||||+|+..|+.+++++| ++++..+..+..      
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i--n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CccCCCCCccceehhcccccccccccccccccccccccccccccc
Confidence            368888888888888888877764    66777  77888888888888888888888888 666666555533      


Q ss_pred             -----------------------------------------------------------------CchHHHHHHHcCCHH
Q 015882           92 -----------------------------------------------------------------AETALILAVKSSQID  106 (399)
Q Consensus        92 -----------------------------------------------------------------g~t~Lh~A~~~g~~~  106 (399)
                                                                                       +.++||.|+..+..+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence                                                                             455555555555555


Q ss_pred             HHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHH
Q 015882          107 AFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNE  186 (399)
Q Consensus       107 ~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~  186 (399)
                      +++.+++.+.      ..+.+|.+|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|++    .++.+
T Consensus       159 ~~~~~~~~~~------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga----d~n~~d~~G~TpL~~A~~----~~~~d  224 (228)
T d1k1aa_         159 MVQLLLQHGA------NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMVARS----RRVID  224 (228)
T ss_dssp             HHHHHHHTTC------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCTTTTCSS----HHHHH
T ss_pred             hhhhhhhhcc------ccccccccCcchHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHh----CCCcc
Confidence            5555555443      378899999999999999999999999999999    999999999999999987    66777


Q ss_pred             HHH
Q 015882          187 IGS  189 (399)
Q Consensus       187 i~~  189 (399)
                      +++
T Consensus       225 ivk  227 (228)
T d1k1aa_         225 ILR  227 (228)
T ss_dssp             HHT
T ss_pred             ccC
Confidence            653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=194.67  Aligned_cols=151  Identities=20%  Similarity=0.233  Sum_probs=138.7

Q ss_pred             ChHhhHHHhcCCHHHHHHHhhc-CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcC
Q 015882           26 CTSMHRAPVEGDGEMIHCLGKL-DPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSS  103 (399)
Q Consensus        26 ~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g  103 (399)
                      .+.||.||..|+.++|+.|++. +.++  +.+|..|+||||+|+ .|+.+++++| ..+.+++..+.+|.+|++.++..+
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~--n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCT--TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCC--CccCCCCCccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            3459999999999999999986 5576  889999999999987 4889999999 888999999999999999999999


Q ss_pred             CHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCc
Q 015882          104 QIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSV  183 (399)
Q Consensus       104 ~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~  183 (399)
                      +.++++++++.+.+      +|.+|.+|+||||+|++.|+.+++++|+ .++    +++.+|.+|+||||+|+.    .+
T Consensus        80 ~~~~~~~~l~~~~~------~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~----~~~~~d~~G~TpL~~A~~----~g  144 (156)
T d1bd8a_          80 FLDTLKVLVEHGAD------VNVPDGTGALPIHLAVQEGHTAVVSFLA-AES----DLHRRDARGLTPLELALQ----RG  144 (156)
T ss_dssp             CHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTS----CTTCCCTTSCCHHHHHHH----SC
T ss_pred             cccccccccccccc------cccccCCCCeeecccccccccccccccc-ccc----cccccCCCCCCHHHHHHH----cC
Confidence            99999999998876      7889999999999999999999999887 567    899999999999999999    88


Q ss_pred             HHHHHHHHHHc
Q 015882          184 SNEIGSILERA  194 (399)
Q Consensus       184 ~~~i~~~L~~~  194 (399)
                      +.+++++|+++
T Consensus       145 ~~~iv~~Ll~h  155 (156)
T d1bd8a_         145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHhh
Confidence            89999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.5e-26  Score=209.07  Aligned_cols=103  Identities=26%  Similarity=0.342  Sum_probs=87.7

Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHh-hhccc-------------------------------ccccccccCCCCCcHHHH
Q 015882           90 SDAETALILAVKSSQIDAFKILVEE-TKRHN-------------------------------REHLFNATDKEGNSLLHL  137 (399)
Q Consensus        90 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~-------------------------------~~~lin~~d~~G~T~LHl  137 (399)
                      ..|.||||.|+++|+.+++++|++. +.+.+                               ....++.+|.+|+||||.
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~  225 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccch
Confidence            4588899999999998888888865 22221                               123467889999999999


Q ss_pred             HHHcCcHHHHHHHHhC-CCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          138 AALNKLIVIVNLLLEG-SSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       138 A~~~~~~~iv~~Ll~~-g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      |++.|+.+++++|++. |.    +++.+|.+|+||||+|++    .++.+++++|+++||+++.
T Consensus       226 a~~~~~~~~v~~lL~~~g~----din~~d~~G~TpL~~A~~----~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSC----CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCC
T ss_pred             hhhcCcHHHHHHHHHcCCC----CCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCc
Confidence            9999999999999985 66    999999999999999999    8899999999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=7e-26  Score=208.87  Aligned_cols=170  Identities=17%  Similarity=0.181  Sum_probs=153.4

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHH
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAV  100 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~  100 (399)
                      +.+|.||||.||..|+.++|++|+++|+++  +.+|.+|.||||+|+..|+.+++++| +++.+....+..+.+|||.|+
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv--n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccc
Confidence            355779999999999999999999999999  89999999999999999999999999 888888888899999999999


Q ss_pred             HcCCHHHHHHHHHhhhccc------------------------------------------------------ccccccc
Q 015882          101 KSSQIDAFKILVEETKRHN------------------------------------------------------REHLFNA  126 (399)
Q Consensus       101 ~~g~~~~v~~Ll~~~~~~~------------------------------------------------------~~~lin~  126 (399)
                      ..++.++++.|++.+....                                                      .......
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            9999999999998875431                                                      1123455


Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          127 TDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       127 ~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                      .+..|.||||+|+..|+.++++.|++.|+    ++|.+|.+|.||||+|+.    .++.+++++|+++|++.+..
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~----din~~~~~g~TpL~~A~~----~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARY----DVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             ccCCCCChhhHHHHcCChhhhccccccee----cccccccCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCc
Confidence            77889999999999999999999999999    999999999999999999    88899999999999988753

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=2.6e-26  Score=211.78  Aligned_cols=171  Identities=23%  Similarity=0.272  Sum_probs=147.7

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      ++++.|.+...  .++.+|.+|.||||+|+..|+.+++++|++++++.  ...+..+.+|||.|+..|+.++++.| ..+
T Consensus        54 ~~v~~Ll~~Ga--dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~--~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~  129 (291)
T d1s70b_          54 EEVLRLLERGA--DINYANVDGLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGYLDIAEYLISQG  129 (291)
T ss_dssp             HHHHHHHHHCC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCC--CCCccCCCCCcHHHHHHhcCCceeeeeeccccccc--ccccccccccccccccccccchhhcccccC
Confidence            56777766543  36889999999999999999999999999999998  78899999999999999999999998 555


Q ss_pred             CCcccc------------------------------------------------------------ccCCchHHHHHHHc
Q 015882           83 ESLAKL------------------------------------------------------------TSDAETALILAVKS  102 (399)
Q Consensus        83 ~~~~~~------------------------------------------------------------d~~g~t~Lh~A~~~  102 (399)
                      ...+..                                                            +..|.||||.|+..
T Consensus       130 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~  209 (291)
T d1s70b_         130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (291)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHc
Confidence            443322                                                            25688999999999


Q ss_pred             CCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCC
Q 015882          103 SQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDS  182 (399)
Q Consensus       103 g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~  182 (399)
                      |+.++++.|++.|++      +|.+|.+|+||||+|++.|+.+++++|+++|+    +++.+|++|+||||+|++     
T Consensus       210 ~~~~~~~~Ll~~g~d------in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga----dv~~~d~~G~TaL~~A~e-----  274 (291)
T d1s70b_         210 GYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAFDVADE-----  274 (291)
T ss_dssp             TCHHHHHHHHTTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTTTSCCS-----
T ss_pred             CChhhhcccccceec------ccccccCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHH-----
Confidence            999999999998877      78999999999999999999999999999999    999999999999999974     


Q ss_pred             cHHHHHHHHHHccC
Q 015882          183 VSNEIGSILERAAA  196 (399)
Q Consensus       183 ~~~~i~~~L~~~ga  196 (399)
                         +++++|.+.+.
T Consensus       275 ---~~~~~L~~~~~  285 (291)
T d1s70b_         275 ---DILGYLEELQK  285 (291)
T ss_dssp             ---GGGHHHHHHHH
T ss_pred             ---HHHHHHHHHhh
Confidence               35555555443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.8e-26  Score=202.08  Aligned_cols=168  Identities=19%  Similarity=0.268  Sum_probs=147.3

Q ss_pred             CCChHhhHHHhcCCHHHH----HHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHH
Q 015882           24 NGCTSMHRAPVEGDGEMI----HCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALIL   98 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v----~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~   98 (399)
                      +|+||||+|+..|+.+++    +.+...+.++  +.+|.+|+||||+|+..|+.+++++| +.+++++.+|.+|+||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i--n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL--NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC--CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc--ccCCCCCCcccccccccccccccccccccccccccccccccccccc
Confidence            699999999999996554    4555678887  89999999999999999999999999 9999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccc-cCCCCHHHHHHh
Q 015882           99 AVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKN-NQGQTALDICKA  177 (399)
Q Consensus        99 A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n-~~g~Tpl~~a~~  177 (399)
                      |+.+++.++++.+++.+.........+....+|+||||.|+..++.+.+++|++.+.    .++..+ .+|.||||+|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~----~~~~~~~~~G~T~L~~A~~  154 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA----DVNAQEPCNGRTALHLAVD  154 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCCHHHHHHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCc----ccccccccCCCCccccccc
Confidence            999999999999999877655556667778889999999999999999999999998    676655 679999999999


Q ss_pred             cCCCCcHHHHHHHHHHccCccCCC
Q 015882          178 NSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       178 ~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                          .++.+++++|+++|++.+..
T Consensus       155 ----~g~~~~v~~Ll~~gad~~~~  174 (221)
T d1iknd_         155 ----LQNPDLVSLLLKCGADVNRV  174 (221)
T ss_dssp             ----TTCHHHHHHHHTTTCCSCCC
T ss_pred             ----cccHHHHHHHHhcCCccccc
Confidence                88999999999999987754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.8e-25  Score=197.47  Aligned_cols=158  Identities=18%  Similarity=0.175  Sum_probs=140.9

Q ss_pred             ChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCcc---ccccCCchHHHHHHH
Q 015882           26 CTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLA---KLTSDAETALILAVK  101 (399)
Q Consensus        26 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~---~~d~~g~t~Lh~A~~  101 (399)
                      +||||+||..|+.++++.|++.++... +.+|.+|+||||+|+..|+.+++++| +.+++++   ..+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            589999999999999999998765544 88999999999999999999999999 8777765   456679999999999


Q ss_pred             cCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCC
Q 015882          102 SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQD  181 (399)
Q Consensus       102 ~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~  181 (399)
                      .+..++++.++..+...    .....+..+.|+++.++..++.++++.|++.+.    +.+.+|.+|+||+|+|+.    
T Consensus        80 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~g~t~l~~a~~----  147 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKP----DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA----SVRIKDKFNQIPLHRAAS----  147 (229)
T ss_dssp             HTCHHHHHHHHSSSSCC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCHHHHHHH----
T ss_pred             ccccccccccccccccc----cccccccccccccccccccchhhhhhhhhhhcc----cccccCCCCCCccchhhh----
Confidence            99999999988876542    256678889999999999999999999999998    889999999999999998    


Q ss_pred             CcHHHHHHHHHHccC
Q 015882          182 SVSNEIGSILERAAA  196 (399)
Q Consensus       182 ~~~~~i~~~L~~~ga  196 (399)
                      .++.++++.|++.|.
T Consensus       148 ~~~~~~~~~Ll~~~~  162 (229)
T d1ixva_         148 VGSLKLIELLCGLGK  162 (229)
T ss_dssp             HTCHHHHHHHHTTTC
T ss_pred             ccccccccccccccc
Confidence            778899999999874

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.9e-25  Score=207.97  Aligned_cols=147  Identities=22%  Similarity=0.226  Sum_probs=120.4

Q ss_pred             cCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCH-------HHHHHhhccCCccccccCCch
Q 015882           22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDT-------GMIREIACSESLAKLTSDAET   94 (399)
Q Consensus        22 d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~-------~iv~~L~~~~~~~~~d~~g~t   94 (399)
                      |.+|+||||+||..|+.++|+.|+++|+++  +.+|..|+||||.|+..++.       ++++++  ...+..+|..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~--~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l--~~~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR--LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL--YPCLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH--GGGGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CcCCcccccHHHHhhhcccchhhhhHHHHHHHH--hhhhhhcccccCC
Confidence            899999999999999999999999999999  89999999999999987752       444444  2346677889999


Q ss_pred             HHHHHHHcCC----HHH--------HHHHHHhhhccc-------------------------------ccccccccCCCC
Q 015882           95 ALILAVKSSQ----IDA--------FKILVEETKRHN-------------------------------REHLFNATDKEG  131 (399)
Q Consensus        95 ~Lh~A~~~g~----~~~--------v~~Ll~~~~~~~-------------------------------~~~lin~~d~~G  131 (399)
                      |||.++..+.    ..+        ++++.+.+....                               ....+|.+|.+|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G  259 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  259 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCC
Confidence            9998886543    233        333444332210                               122379999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHH
Q 015882          132 NSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK  176 (399)
Q Consensus       132 ~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~  176 (399)
                      +||||+|++.|+.+++++|++.|+    +++.+|++|.||||+|+
T Consensus       260 ~TpLh~A~~~g~~~iv~~Ll~~GA----d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         260 DTCLNIAARLGNISIVDALLDYGA----DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTC----CTTCCCTTSCCGGGGTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999    99999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8e-24  Score=203.73  Aligned_cols=161  Identities=26%  Similarity=0.288  Sum_probs=144.1

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHH
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALI   97 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh   97 (399)
                      ...+.+|.||||+|+..++.++++.+++.+...  +..|..|.||+|.|+..++.+++++| +.+.+++..+..+.||||
T Consensus       225 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~  302 (408)
T d1n11a_         225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG--NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH  302 (408)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHH
T ss_pred             cccCCCCCCHHHHHHHhCcHhHhhhhhcccccc--ccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccch
Confidence            445677888999999999999999998888887  77888899999999999999999999 888888888888999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHh
Q 015882           98 LAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKA  177 (399)
Q Consensus        98 ~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~  177 (399)
                      .++..++.++++++++.|++      +|.+|.+|+||||+|++.|+.+++++|+++|+    +++.+|++|+||||+|++
T Consensus       303 ~~~~~~~~~~~~~ll~~g~~------in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA----d~n~~d~~G~t~L~~A~~  372 (408)
T d1n11a_         303 VASHYGNIKLVKFLLQHQAD------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAIAKR  372 (408)
T ss_dssp             HHHHSSCSHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCSSSCCHHHHHHH
T ss_pred             hhcccCcceeeeeecccccc------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHH
Confidence            99999999999999988776      89999999999999999999999999999999    999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHcc
Q 015882          178 NSQDSVSNEIGSILERAA  195 (399)
Q Consensus       178 ~~~~~~~~~i~~~L~~~g  195 (399)
                          .++.+++++|....
T Consensus       373 ----~~~~~iv~~L~~~~  386 (408)
T d1n11a_         373 ----LGYISVTDVLKVVT  386 (408)
T ss_dssp             ----TTCHHHHHHHHHHC
T ss_pred             ----cCCHHHHHHHHHHH
Confidence                77788888775543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.2e-25  Score=177.07  Aligned_cols=120  Identities=13%  Similarity=0.082  Sum_probs=112.4

Q ss_pred             CCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCc-hHHHHHHH
Q 015882           24 NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAE-TALILAVK  101 (399)
Q Consensus        24 ~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~-t~Lh~A~~  101 (399)
                      .+.++||+|+..|+.+++++|+++|+++  +.+|.+|.||||+|+ .|+.+++++| +.+++++.+|..+. ||||.|++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~--n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT--TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc--ccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            4678999999999999999999999999  899999999999775 7999999999 99999999998876 69999999


Q ss_pred             cCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 015882          102 SSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLE  152 (399)
Q Consensus       102 ~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~  152 (399)
                      +|+.+++++|++.|++      ++.+|.+|+||||+|++.|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGAR------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999887      88999999999999999999999999975

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.6e-24  Score=203.90  Aligned_cols=166  Identities=23%  Similarity=0.289  Sum_probs=150.9

Q ss_pred             ChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCC
Q 015882           26 CTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQ  104 (399)
Q Consensus        26 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~  104 (399)
                      .||||+||..|+.++|++|+++|+++  +.+|..|.||||+|+..|+.+++++| ++|++++.+|.+|+||||+|+++|+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~i--n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence            49999999999999999999999999  88999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccc---------------------------ccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 015882          105 IDAFKILVEETKRHN---------------------------REHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSD  157 (399)
Q Consensus       105 ~~~v~~Ll~~~~~~~---------------------------~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~  157 (399)
                      .+++++|+....+..                           .....+.+|.++.++|+.|+..++.++++.|++.++  
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~--  156 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA--  156 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC--
Confidence            999999998765432                           224456778899999999999999999999999998  


Q ss_pred             cccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          158 IIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       158 ~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                        +++..+.+|.+||++|+.    .++.+++++|+++|++.+..
T Consensus       157 --~~~~~~~~~~~~L~~A~~----~~~~~~~~~Ll~~g~~~~~~  194 (408)
T d1n11a_         157 --HPNAAGKNGLTPLHVAVH----HNNLDIVKLLLPRGGSPHSP  194 (408)
T ss_dssp             --CTTCCCSSCCCHHHHHHH----TTCHHHHHHHGGGTCCSCCC
T ss_pred             --CCCcCCCcCchHHHHHHH----cCCHHHHHHHHhcCCccccc
Confidence              899999999999999998    77889999999999877643

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=176.55  Aligned_cols=139  Identities=18%  Similarity=0.180  Sum_probs=125.3

Q ss_pred             HHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hcc
Q 015882            4 ELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACS   82 (399)
Q Consensus         4 e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~   82 (399)
                      +.++.+.+.. +..++.+|..|+||||+|+ .|+.+++++|++++.++  +.++..|.+|++.++..++.++++.+ +.+
T Consensus        16 ~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~   91 (156)
T d1bd8a_          16 QEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP--NVQDTSGTSPVHDAARTGFLDTLKVLVEHG   91 (156)
T ss_dssp             HHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhC-CCCCCccCCCCCccccccc-ccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence            4566665544 4457889999999999987 58999999999999998  88999999999999999999999999 888


Q ss_pred             CCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 015882           83 ESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEG  153 (399)
Q Consensus        83 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~  153 (399)
                      .+++.+|.+|+||||+|++.|+.+++++|+ .+++      ++.+|.+|+||||+|++.|+.+++++|+++
T Consensus        92 ~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD------LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccCCCCeeecccccccccccccccc-cccc------ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999999887 4555      789999999999999999999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.6e-25  Score=176.95  Aligned_cols=106  Identities=17%  Similarity=0.152  Sum_probs=98.6

Q ss_pred             ChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCC
Q 015882           26 CTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQ  104 (399)
Q Consensus        26 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~  104 (399)
                      +|||++|+..|+.++|+.|+++|+++  +.+|.+|+||||+|+..|+.+++++| ..+.+++.+|.+|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~--n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC--CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc--ccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCc
Confidence            58999999999999999999999998  88999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccccccccccCCCCCcHHHHHH
Q 015882          105 IDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA  139 (399)
Q Consensus       105 ~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~  139 (399)
                      .+++++|++.|++      ++.+|.+|+||||+|.
T Consensus        81 ~~~v~~Ll~~Gad------~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGAD------KTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCC------SSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhccccc------ceeeCCCCCCHHHHHh
Confidence            9999999998877      7889999999999883

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.4e-23  Score=171.70  Aligned_cols=142  Identities=19%  Similarity=0.203  Sum_probs=130.1

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      .|+++.|.+....  ++.+|.+|.||||+|+ .|+.|++++|+++++++  +.++..|.+|++.++..++.+.++.| .+
T Consensus        14 ~~~v~~Ll~~g~d--~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~   88 (156)
T d1ihba_          14 LEQLTSLLQNNVN--VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP--DLKDRTGFAVIHDAARAGFLDTLQTLLEF   88 (156)
T ss_dssp             HHHHHHHTTSCCC--TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCC--cCccCCcccccccccc-ccccccccccccccccc--ccccccCcccccccccccccccccccccc
Confidence            3678888776533  6889999999999886 79999999999999999  89999999999999999999999999 88


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS  154 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g  154 (399)
                      +..++..|..|.+|+|.|+..++.+++++|+++++.     +.+.+|.+|.||||+|++.++.+++++|+++|
T Consensus        89 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          89 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccc-----cccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            889999999999999999999999999999998753     37889999999999999999999999999886

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=2.2e-25  Score=211.62  Aligned_cols=131  Identities=14%  Similarity=0.088  Sum_probs=85.0

Q ss_pred             ccccCCCChHhhHHHhcCCHHHHHH---HhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccc--cCC
Q 015882           19 STQNQNGCTSMHRAPVEGDGEMIHC---LGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLT--SDA   92 (399)
Q Consensus        19 ~~~d~~G~TpLh~Aa~~G~~~~v~~---Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d--~~g   92 (399)
                      ..+|.+|.||||+||..|+.++++.   |++.|+++  +.+|.+|+||||+||+.|+.++|++| +.+++++..+  .+|
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i--n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV--KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC--C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc--cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCC
Confidence            4556677777777777777665554   56677776  66777777777777777777777777 6666666554  347


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 015882           93 ETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGS  154 (399)
Q Consensus        93 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g  154 (399)
                      +||||+|+++||.+++++|++.|++.   ...+..+.+|.||+|.|+..|+.+++++|++.|
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~---~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTE---ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGG---HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcc---cccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            77777777777777777777765541   112334445556666666777777777776654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-23  Score=168.60  Aligned_cols=120  Identities=16%  Similarity=0.150  Sum_probs=110.0

Q ss_pred             hHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCH
Q 015882           27 TSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQI  105 (399)
Q Consensus        27 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~  105 (399)
                      ++||.||..|+.++|+.|+++|+++  +.+|.+|+||||+|+..|+.+++++| +.+.+++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~--n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC--CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc--cccccccccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            6899999999999999999999999  89999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccccccccCC-CCCcHHHHH--HHcCcHHHHHHHHhCC
Q 015882          106 DAFKILVEETKRHNREHLFNATDK-EGNSLLHLA--ALNKLIVIVNLLLEGS  154 (399)
Q Consensus       106 ~~v~~Ll~~~~~~~~~~lin~~d~-~G~T~LHlA--~~~~~~~iv~~Ll~~g  154 (399)
                      +++++|+++|++      ++.++. +|+|+++++  ++.|+.+++++|++.+
T Consensus        81 ~~v~~Ll~~ga~------v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAA------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCC------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCC------cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999887      666664 588988776  5678899999998653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.1e-23  Score=168.28  Aligned_cols=106  Identities=24%  Similarity=0.286  Sum_probs=102.0

Q ss_pred             CcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHH
Q 015882           61 TTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA  139 (399)
Q Consensus        61 ~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~  139 (399)
                      .|||++|++.|+.+++++| +.+.+++.+|.+|+||||+|+.+|+.++++++++.|++      +|.+|.+|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d------in~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD------INAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT------TTCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccce------eeecccccccchhhhh
Confidence            4899999999999999999 99999999999999999999999999999999999877      8899999999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHH
Q 015882          140 LNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICK  176 (399)
Q Consensus       140 ~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~  176 (399)
                      +.|+.+++++|++.|+    +++.+|.+|+||+|+|.
T Consensus        77 ~~~~~~~v~~Ll~~Ga----d~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGA----DKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTTCCHHHHHHHTTCC----CSSSSSSSTCCCCCTCS
T ss_pred             hcCchhhhhhhhcccc----cceeeCCCCCCHHHHHh
Confidence            9999999999999999    99999999999999884

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.5e-23  Score=166.96  Aligned_cols=119  Identities=14%  Similarity=0.178  Sum_probs=110.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCC-cHHHH
Q 015882           60 LTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGN-SLLHL  137 (399)
Q Consensus        60 g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~-T~LHl  137 (399)
                      +.++||+|+..|+.+++++| +++++++.+|.+|+||+|.|+ .|+.+++++|++.|++      +|.+|..|. ||||+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------PNCADPATLTRPVHD   75 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------CCCCCTTTCCCHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccc------ccccccccccccccc
Confidence            56899999999999999999 999999999999999999775 7999999999999887      788888775 69999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHH
Q 015882          138 AALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILER  193 (399)
Q Consensus       138 A~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~  193 (399)
                      |++.|+.+++++|++.|+    +++.+|.+|+||+|+|++    .++.+++++|+.
T Consensus        76 A~~~g~~~~v~~Ll~~ga----~~~~~d~~G~T~l~~A~~----~g~~~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGA----RLDVRDAWGRLPVDLAEE----LGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTC----CSSCCCTTCCCHHHHHHH----HTCHHHHHHHSS
T ss_pred             cccccccccccccccccc----ccccccCCCCCHHHHHHH----cCCHHHHHHHHh
Confidence            999999999999999999    999999999999999998    788999999864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-22  Score=164.07  Aligned_cols=123  Identities=22%  Similarity=0.251  Sum_probs=111.2

Q ss_pred             cHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHH
Q 015882           62 TPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAL  140 (399)
Q Consensus        62 tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~  140 (399)
                      ++||.|+..|+.++++.| +.+++++.+|.+|+||||+|+..|+.+++++|++.+++      +|.+|.+|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~------~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccc------cccccccCcccccccch
Confidence            689999999999999999 99999999999999999999999999999999999877      78999999999999999


Q ss_pred             cCcHHHHHHHHhCCCCCccccccccc-CCCCHHHHHHhcCCCCcHHHHHHHHHHccC
Q 015882          141 NKLIVIVNLLLEGSSSDIIQIDSKNN-QGQTALDICKANSQDSVSNEIGSILERAAA  196 (399)
Q Consensus       141 ~~~~~iv~~Ll~~g~~~~v~~~~~n~-~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga  196 (399)
                      .|+.+++++|+++|+    +++..+. +|+||++++...  ..++.+++++|+..+.
T Consensus        77 ~g~~~~v~~Ll~~ga----~v~~~~~~~~~~~~~~~~a~--~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          77 CNNVQVCKFLVESGA----AVFAMTYSDMQTAADKCEEM--EEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             TTCHHHHHHHHHTTC----CTTCCCSSSCCCHHHHCCSS--STTCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCC----CcccccCCCCCCHHHHHHHH--HcChHHHHHHHHhHHH
Confidence            999999999999999    8998774 689999887531  2456789999987654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.1e-21  Score=161.34  Aligned_cols=137  Identities=15%  Similarity=0.150  Sum_probs=125.0

Q ss_pred             hHHHHHHHhcCCccccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh-hc
Q 015882            3 NELIELAKKDKVQEKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI-AC   81 (399)
Q Consensus         3 ~e~i~~l~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L-~~   81 (399)
                      .|+++.|.+...+.  . .|..|+||||+|+..++.++++.++......  ...+..+.++++.++...+.++++++ ..
T Consensus        15 ~~~v~~LL~~ga~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (153)
T d1awcb_          15 DDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR--DARTKVDRTPLHMAASEGHANIVEVLLKH   89 (153)
T ss_dssp             HHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCc--c-cccCCCccccccccccccccccccccccccc--cccccccccccccccccccceeeeccccc
Confidence            46788888766442  2 6899999999999999999999999988887  67788889999999999999999999 88


Q ss_pred             cCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHH
Q 015882           82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLL  150 (399)
Q Consensus        82 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~L  150 (399)
                      +.+.+.+|.+|.||||+|+..|+.+++++|++.|++      ++.+|.+|.||||+|+..|+.+++++|
T Consensus        90 ~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad------~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCccccccccCchHHHhhhhcchhheeeeccccccC------CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            889999999999999999999999999999999887      789999999999999999999999876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=9.3e-22  Score=179.13  Aligned_cols=130  Identities=20%  Similarity=0.260  Sum_probs=110.9

Q ss_pred             cccccccCCCChHhhHHHhcCCHHHHHHHhhcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHh----------------
Q 015882           16 EKDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI----------------   79 (399)
Q Consensus        16 ~l~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L----------------   79 (399)
                      ..++.+|.+|+||||+|+..|+.+++++|+++|+++  +.+|.+|.||||+|...|+.++++.+                
T Consensus        65 advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~--n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          65 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             CCccccCCCCCeeecccccccccccccccccccccc--ccccccccccccchhhhcchhhhhhhhhcccccccccccccc
Confidence            347789999999999999999999999999999998  77788888888888777766555444                


Q ss_pred             ------------------------------------------------------------------hccCCccccccCCc
Q 015882           80 ------------------------------------------------------------------ACSESLAKLTSDAE   93 (399)
Q Consensus        80 ------------------------------------------------------------------~~~~~~~~~d~~g~   93 (399)
                                                                                        ..+.+.+.+|..|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~  222 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  222 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             cchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCC
Confidence                                                                              22333334457799


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 015882           94 TALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEG  153 (399)
Q Consensus        94 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~  153 (399)
                      ||||+|++.|+.+++++|++.|++      +|.+|.+|+||||+|++.|+.+++++|++.
T Consensus       223 tpL~~A~~~g~~~iv~~Ll~~gad------in~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         223 TPIMLAAQEGRIEVVMYLIQQGAS------VEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC------SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999887      889999999999999999999999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.8e-21  Score=162.47  Aligned_cols=122  Identities=19%  Similarity=0.107  Sum_probs=109.5

Q ss_pred             HhhHHHhcCCHHHHHHHhhcCCCCCC----ccCCCCCCcHHHHHHHc---CCHHHHHHh-hccCCccccccCCchHHHHH
Q 015882           28 SMHRAPVEGDGEMIHCLGKLDPQTGS----VVEDNGLTTPLHRAAVN---GDTGMIREI-ACSESLAKLTSDAETALILA   99 (399)
Q Consensus        28 pLh~Aa~~G~~~~v~~Ll~~~~~~~~----~~~d~~g~tpLh~Aa~~---g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A   99 (399)
                      .|+.|++.++++.+..++..|.++..    ...+..|+||||+|++.   |+.+++++| ++|++++.+|.+|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            45688899999999999998877631    12367899999999985   678999999 99999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 015882          100 VKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSS  155 (399)
Q Consensus       100 ~~~g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~  155 (399)
                      ++.|+.+++++|+++|++      ++.+|.+|+||||+|++.|+.+++++|++.++
T Consensus        89 ~~~~~~~~v~~Ll~~gad------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKAS------IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccCcc------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999887      78999999999999999999999999999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=4.4e-21  Score=167.53  Aligned_cols=153  Identities=22%  Similarity=0.241  Sum_probs=133.2

Q ss_pred             HHHHHHHhhcCCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhh
Q 015882           38 GEMIHCLGKLDPQTGSVV-EDNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQIDAFKILVEET  115 (399)
Q Consensus        38 ~~~v~~Ll~~~~~~~~~~-~d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~  115 (399)
                      .|+|+.|+++|+++  +. .|.+|.||||+||+.|+.+++++| ..+..++.++..+.++++.++..++.+.........
T Consensus         2 ~~~v~~Ll~~g~di--n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAEL--NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCc--CcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            58999999999998  66 589999999999999999999999 999999999999999999999888877554444332


Q ss_pred             hcc----------------------------cccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccC
Q 015882          116 KRH----------------------------NREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQ  167 (399)
Q Consensus       116 ~~~----------------------------~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~  167 (399)
                      ...                            ..+..++.+|..|+||||.++..+..++++.+++.+.    +++.+|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~----~~~~~d~~  155 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA----NRDAQDDK  155 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTT
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccc----cccccccc
Confidence            111                            0233478899999999999999999999999999998    89999999


Q ss_pred             CCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          168 GQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       168 g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      |.||||+|+.    .++.++++.|+++|++.+.
T Consensus       156 g~TpL~~A~~----~g~~~~v~~Ll~~gad~n~  184 (209)
T d1ot8a_         156 DETPLFLAAR----EGSYEASKALLDNFANREI  184 (209)
T ss_dssp             CCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             cccccchhcc----ccHHHHHHHHHHCCCCCCC
Confidence            9999999999    8899999999999998763

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.7e-20  Score=156.43  Aligned_cols=124  Identities=27%  Similarity=0.348  Sum_probs=108.4

Q ss_pred             HHHHHHHcCCHHHHHHh-hccCCcccc------ccCCchHHHHHHHc---CCHHHHHHHHHhhhcccccccccccCCCCC
Q 015882           63 PLHRAAVNGDTGMIREI-ACSESLAKL------TSDAETALILAVKS---SQIDAFKILVEETKRHNREHLFNATDKEGN  132 (399)
Q Consensus        63 pLh~Aa~~g~~~iv~~L-~~~~~~~~~------d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~lin~~d~~G~  132 (399)
                      .|+.|++.++.+.+..+ ..+.++...      +..|+||||+|++.   ++.+++++|++.|++      +|.+|.+|+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad------in~~d~~g~   82 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC------TTCCCTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC------hhhhhhhhc
Confidence            35578899998888777 655554433      67799999999975   678999999999887      889999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          133 SLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       133 T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      ||||+|++.|+.+++++|+++|+    +++.+|.+|+||+|+|++    .++.+++++|+++++....
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~----~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKA----SIEIANESGETPLDIAKR----LKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTCCC
T ss_pred             cccccccccccccccccccccCc----cccccCCCCCCHHHHHHH----cCCHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999    999999999999999998    8889999999999876553

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.5e-21  Score=173.07  Aligned_cols=137  Identities=23%  Similarity=0.252  Sum_probs=122.0

Q ss_pred             cccccCCCChHhhHHHhcCCHHHHHHHhhc-CCCCCCccCCCCCCcHHHHHHHcC----CHHHHHHh-hccCCccccccC
Q 015882           18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKL-DPQTGSVVEDNGLTTPLHRAAVNG----DTGMIREI-ACSESLAKLTSD   91 (399)
Q Consensus        18 ~~~~d~~G~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~~d~~g~tpLh~Aa~~g----~~~iv~~L-~~~~~~~~~d~~   91 (399)
                      ....+..|.||||+|+..|+.++++.|+++ +.++  +..+..|.++++.+...+    ..+++++| +.+++++.+|.+
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~  218 (285)
T d1wdya_         141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADV--NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER  218 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT--TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT
T ss_pred             hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc--ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCC
Confidence            345677899999999999999999999975 6777  889999999988766544    35789999 899999999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHh-hhcccccccccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCccccccccc
Q 015882           92 AETALILAVKSSQIDAFKILVEE-TKRHNREHLFNATDKEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNN  166 (399)
Q Consensus        92 g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~lin~~d~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~  166 (399)
                      |+||||.|++.|+.+++++|++. |.+      +|.+|.+|+||||+|++.|+.+++++|+++|+    ++|++|.
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~~g~d------in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GA----d~n~~d~  284 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRGA----STDCGDL  284 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS----CSCCSSC
T ss_pred             CCCccchhhhcCcHHHHHHHHHcCCCC------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCcccC
Confidence            99999999999999999999985 444      89999999999999999999999999999999    9998873

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.3e-20  Score=159.54  Aligned_cols=135  Identities=23%  Similarity=0.245  Sum_probs=119.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHh-----hccCCccccccCCchHHHHHHHcCCHHHHHHHHHhhhccc-------------
Q 015882           58 NGLTTPLHRAAVNGDTGMIREI-----ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN-------------  119 (399)
Q Consensus        58 ~~g~tpLh~Aa~~g~~~iv~~L-----~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-------------  119 (399)
                      ++|.||||+|+..|+.++++.|     +.+.+++.+|.+|+||||+|+.+|+.+++++|++.+++.+             
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            4699999999999999999988     4788999999999999999999999999999999887542             


Q ss_pred             ----------------------------------------------------ccccccccCCCCCcHHHHHHHcCcHHHH
Q 015882          120 ----------------------------------------------------REHLFNATDKEGNSLLHLAALNKLIVIV  147 (399)
Q Consensus       120 ----------------------------------------------------~~~lin~~d~~G~T~LHlA~~~~~~~iv  147 (399)
                                                                          ........+..|+++||.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                1122344567899999999999999999


Q ss_pred             HHHHhCCCCCcccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCC
Q 015882          148 NLLLEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQT  200 (399)
Q Consensus       148 ~~Ll~~g~~~~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~  200 (399)
                      +.+++.+.    +.+.+|..|+||+|+|+.    .++.+++++|+++|++.+.
T Consensus       161 ~~~~~~~~----~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~Gad~n~  205 (228)
T d1k1aa_         161 QLLLQHGA----NVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSSL  205 (228)
T ss_dssp             HHHHHTTC----CTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             hhhhhhcc----ccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            99999998    899999999999999998    7889999999999998764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.80  E-value=4e-22  Score=188.89  Aligned_cols=163  Identities=12%  Similarity=0.024  Sum_probs=126.4

Q ss_pred             ChHhhHHHhcCCHHHHHHHhhcCCCCC---------CccCCCCCCcHHHHHHHcCCHHHHHH---h-hccCCccccccCC
Q 015882           26 CTSMHRAPVEGDGEMIHCLGKLDPQTG---------SVVEDNGLTTPLHRAAVNGDTGMIRE---I-ACSESLAKLTSDA   92 (399)
Q Consensus        26 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~---------~~~~d~~g~tpLh~Aa~~g~~~iv~~---L-~~~~~~~~~d~~g   92 (399)
                      .++++.+...+..++.+.+...+.+..         .+.++..|.||||+||.+|+.+++++   | ..+++++.+|.+|
T Consensus        47 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g  126 (346)
T d2ajaa1          47 AIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN  126 (346)
T ss_dssp             HHHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCC
Confidence            344555555555666666654432221         03567789999999999999888776   5 8899999999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhhhcccccccccccC--CCCCcHHHHHHHcCcHHHHHHHHhCCCCCcccccccccCCCC
Q 015882           93 ETALILAVKSSQIDAFKILVEETKRHNREHLFNATD--KEGNSLLHLAALNKLIVIVNLLLEGSSSDIIQIDSKNNQGQT  170 (399)
Q Consensus        93 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~lin~~d--~~G~T~LHlA~~~~~~~iv~~Ll~~g~~~~v~~~~~n~~g~T  170 (399)
                      +||||+|+++||.+++++|++.|++      ++..|  .+|+||||+|++.|+.+++++|++.|+ ...+.+..+.+|.|
T Consensus       127 ~taL~~Aa~~G~~~~v~~Ll~~g~~------~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~-~~~~~~~~~~~~~t  199 (346)
T d2ajaa1         127 YQAFRLAAENGHLHVLNRLCELAPT------EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP-TEATAMIQAENYYA  199 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTT------THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCG-GGHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCC------ccccccccCCCChhHHHHHHhhHHHHHHHHHcCC-cccccccccCCCcc
Confidence            9999999999999999999999887      55554  569999999999999999999999987 11123455667788


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHccCccC
Q 015882          171 ALDICKANSQDSVSNEIGSILERAAARKQ  199 (399)
Q Consensus       171 pl~~a~~~~~~~~~~~i~~~L~~~ga~~~  199 (399)
                      |++.|+.    .++.+++++|+++|++..
T Consensus       200 ~l~~A~~----~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         200 FRWAAVG----RGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHST----TCCHHHHHHHTTSHHHHH
T ss_pred             hhhHHhh----cCHHHHHHHHHhCCCCcc
Confidence            8888887    788999999999998654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.5e-19  Score=167.64  Aligned_cols=144  Identities=17%  Similarity=0.189  Sum_probs=109.8

Q ss_pred             cCCCCCCccC-CCCCCcHHHHHHHcCCHHHHHHh-hccCCccccccCCchHHHHHHHcCCH---HHHHHHHHhhhccccc
Q 015882           47 LDPQTGSVVE-DNGLTTPLHRAAVNGDTGMIREI-ACSESLAKLTSDAETALILAVKSSQI---DAFKILVEETKRHNRE  121 (399)
Q Consensus        47 ~~~~~~~~~~-d~~g~tpLh~Aa~~g~~~iv~~L-~~~~~~~~~d~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~  121 (399)
                      .+.++  +.+ |.+|+||||+||..|+.++|++| +.+++++.+|..|+||||.|+..++.   +.++.+++....    
T Consensus        95 ~~~dv--n~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----  168 (301)
T d1sw6a_          95 TQLNL--NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----  168 (301)
T ss_dssp             SCCCS--CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----
T ss_pred             cCCCc--CcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----
Confidence            34455  444 89999999999999999999999 99999999999999999999987752   233344443221    


Q ss_pred             ccccccCCCCCcHHHHHHHcCc----H--------HHHHHHHhCCCCC--------------------------------
Q 015882          122 HLFNATDKEGNSLLHLAALNKL----I--------VIVNLLLEGSSSD--------------------------------  157 (399)
Q Consensus       122 ~lin~~d~~G~T~LHlA~~~~~----~--------~iv~~Ll~~g~~~--------------------------------  157 (399)
                       .++.+|..|+||||.++..+.    .        .+++++++.+...                                
T Consensus       169 -~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (301)
T d1sw6a_         169 -CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  247 (301)
T ss_dssp             -GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             -hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHH
Confidence             266789999999999886443    2        2334444444310                                


Q ss_pred             -cccccccccCCCCHHHHHHhcCCCCcHHHHHHHHHHccCccCCC
Q 015882          158 -IIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAAARKQTA  201 (399)
Q Consensus       158 -~v~~~~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  201 (399)
                       ...+|.+|.+|+||||+|++    .++.+++++|+++|++....
T Consensus       248 ~~~~in~~D~~G~TpLh~A~~----~g~~~iv~~Ll~~GAd~~~~  288 (301)
T d1sw6a_         248 IANMLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPFIA  288 (301)
T ss_dssp             HHHTTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTCC
T ss_pred             HhcCccCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCC
Confidence             00168899999999999999    88899999999999998753