Citrus Sinensis ID: 015886

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREECDCSTRTEADPIPPID
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHccccHHHHHHHHHHcccHHHHccccccEEEcccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEEEEEcHHHHHHHHcccccccEEEEcccccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEEEEccEEEEEcccccccEEEEccccccHHHHHHcccccccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEccccEEEEEcccccccccccccccEEEEEEEccEEEccEEEEEHHHHHHHHHccccEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccccccccHEEEcccEEEEEEEcEEccccccccccHHHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEccccEEEEEccccccccccccccccHHHHEEEccccHccccHEEcccccEEEEEEEcccccHHHHcccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
MMRIGVLEvdgistlpepilhhilsflpFKEVAQTCLLSKRWKQVWQtfpdvevggmftnprksKEILTSLEPALLNRQRKMISIKKFSLEldlinspenaslAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYcklqqpsenvklfSLRKLALREVCADDQAIASLIsgcplieyleirsceglesldlvnlsnLKEIILVNTSDIKRVEIKTSNVNALAIHQtylfpievnvsscgnlkclkfdflpiedewlcngisklplleylsmtkchkltsvrisspclKTLILECCDKLIQVeietpnlsifkyhgdlisfssnalslsetslcfsshlMVNIEWVVEYFEILAMFQKFSKVLNlqcreecdcstrteadpippid
Flexible Loop (DISEMBL)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTfpdvevggmftnprkskeiLTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIlvntsdikrveIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREEcdcstrteadpippid
Low Complexity Region (SEG)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREECDCSTRTEADPIPPID
Disordered region (IsUnstruct)
***IGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRK*KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREECDC*************
Disordered Region (DISOPRED)
******L***GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREECDCSTRTEADPIPP**
Disordered Region (DISEMBL)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREECDCSTRTEADPIPPID
Disordered Region (DISPRO)
*********DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREECDCST****DPI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREECDCSTRTEADPIPPID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
Q9LZ15	456	Putative F-box/LRR-repeat	yes	no	0.525	0.458	0.298	2e-16
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.530	0.453	0.297	9e-16
Q1PE04	258	F-box/LRR-repeat protein	no	no	0.457	0.705	0.319	1e-14
Q501G5	307	F-box protein At5g03100 O	no	no	0.467	0.605	0.331	3e-14
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.464	0.394	0.284	4e-14
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.452	0.394	0.318	5e-14
Q3EA38	427	Putative F-box/FBD/LRR-re	no	no	0.462	0.430	0.308	8e-14
Q9C7M1	422	Putative FBD-associated F	no	no	0.600	0.566	0.274	2e-13
Q9SMU0	443	Putative F-box/FBD/LRR-re	no	no	0.444	0.399	0.321	7e-12
Q84W80	481	F-box/LRR-repeat protein	no	no	0.467	0.386	0.305	1e-11

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 32/241 (13%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEV----GGMFTNPRKS 64
            D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++    G M       
Sbjct: 26  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAM------- 78

Query: 65  KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL---VL 121
            + LTS    +         I  F L +DL  +          +  A+   V+ L   V 
Sbjct: 79  NQTLTSYTAPI---------ITSFKLVMDL--NSNTVPQVDSWIEFALSRNVQNLSVFVR 127

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIAS 180
               S+    P+I +   SL +L+++       P+  V   SLR L LR     D++I +
Sbjct: 128 DFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHN 187

Query: 181 LISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY 240
           ++SGCP++E L + +C  LE LDL    NL+ +      DI +   +T  V  +A H  Y
Sbjct: 188 ILSGCPILESLTLDTCRLLERLDLSKSPNLRRL------DINQQYRRTGPVAIVAPHIYY 241

Query: 241 L 241
           L
Sbjct: 242 L 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 85.1 bits (209), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 28/239 (11%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP--DVEVGGMFTNPRKSKE 66
            D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P  D+++    TN     +
Sbjct: 27  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHGETN-----Q 81

Query: 67  ILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL---VLVH 123
            LTS    +         I  F L +DL  +          +  A+   V+ L   V   
Sbjct: 82  TLTSYTAPI---------ITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDF 130

Query: 124 WRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLI 182
             ++    P+I +   SL  L+++       P+  V   SLR L LR     D+++ +++
Sbjct: 131 TYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNIL 190

Query: 183 SGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           SGCP++E L + +C  LE LDL    NL+ +      DI R   +T  +  +A H  YL
Sbjct: 191 SGCPILESLTLDTCRLLERLDLSKSPNLRRL------DINRQYRRTGPIAIVAPHIYYL 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 15/197 (7%)

Query: 10  DGISTLPEPILHHILSFLPFKE-VAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           D IS LP+ ILHHILSF+P    V +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct: 28  DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER 128
            S   + +       S   +S E   ++S          +  A+   V  L L       
Sbjct: 88  ASYTASKITSFHLCTS---YSYEAGHVHS---------SIEFAMSHNVDNLSLAFSSFPP 135

Query: 129 RN-LPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
            N  P+  +   SL  +EL    L  PS  V   SLR L+L      D++   ++SGCP+
Sbjct: 136 CNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPI 194

Query: 188 IEYLEIRSCEGLESLDL 204
           +E L ++ CE L+ LDL
Sbjct: 195 LESLSLKFCESLKYLDL 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q501G5|FB250_ARATH F-box protein At5g03100 OS=Arabidopsis thaliana GN=At5g03100 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 1   MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN 60
           M R G   VD IS+LP+ ILHHIL+  P K   +T +LSKRWK VW   P + +     +
Sbjct: 1   MKRAGG-GVDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVD 59

Query: 61  PRKSKEILTSLEPALLNRQRKMISIKKFSLELDL-INSPENASLAGRCLGLAIESEVKEL 119
           P    + L+S              IK F + +   +  PE  +     L L+ ++E   L
Sbjct: 60  PDSLNKTLSSYSTP---------KIKSFDVTISRDVTVPEIDTWIN--LALSRKAENVSL 108

Query: 120 VLV-HWRSERRNLPEIIFYVESLHVLELS--YCKLQQPSENVKLFSLRKLALREVCADDQ 176
               H+R       +  F   SL  L L+  YC L  P   V   SLR L+L      D 
Sbjct: 109 RFTSHYR-----FRDTFFINSSLKQLSLTLVYCIL-NPKCVVSWSSLRNLSLNRCKVSDD 162

Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDL 204
           +IA +++GC L+E L +  C+ L  LDL
Sbjct: 163 SIAKILTGCSLLESLTLNLCDRLNDLDL 190

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 12/197 (6%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           VD IS LP+ +L HI S++P +   +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct: 27  VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKTL 86

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SE 127
            S   +   + +      ++S E D  +           +  A+   V +L L   R S 
Sbjct: 87  ASYTAS---KIKSFHLCTRYSYEADTHH-------VNSSIEFAMSHNVDDLSLAFRRCSP 136

Query: 128 RRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
             N  +  +   SL  +EL Y  L  P   V   SL+ L+L +    D++   ++SGCP+
Sbjct: 137 FYNFDDCFYTNSSLKRVELRYVDL-MPRCMVSWTSLKNLSLTDCTMSDESFLEILSGCPI 195

Query: 188 IEYLEIRSCEGLESLDL 204
           +E L ++ C  L+ L+L
Sbjct: 196 LESLSLKFCMSLKYLNL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 18/198 (9%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           VD IS+LP+ IL HILSF+P K    T LLSKRW+ VW   P +             E L
Sbjct: 30  VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR--S 126
           T    +      KM+   +F L   LIN   N       +  A+   V  L L  W   +
Sbjct: 90  TRYTAS------KMM---RFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVA 137

Query: 127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCP 186
            +   P+      SL  L +    +   S+ +    L+KL L      D+++A+++ GCP
Sbjct: 138 NKFKFPDFFHINSSLKQLTV----VLDFSDTMIAICLKKLYLSTCLLSDESMANILFGCP 193

Query: 187 LIEYLEIRSCEGLESLDL 204
           ++E L +  C GL  LDL
Sbjct: 194 ILESLTLDHCGGLRVLDL 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EA38|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana GN=At4g13965 PE=4 SV=2

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 7/191 (3%)

Query: 5   GVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKS 64
           G++  D IS LPE ++  ILS LP +    T +LSK+W+ +W+  P +    +     + 
Sbjct: 9   GIVNADRISQLPEALIIQILSLLPTEVAVTTSVLSKQWQFLWKMLPKLNFDSL-DQRHEF 67

Query: 65  KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW 124
           K    +++ ALL+ +  ++      + L L NS   A L    +G+A    +++LVL   
Sbjct: 68  KTFSKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKL----IGIAFACNLRKLVL-EV 122

Query: 125 RSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLIS 183
              R ++PE ++  E+L  LEL Y  L     ++ L SLR L L  V   D+++  +L+S
Sbjct: 123 DGGRFSIPESLYNCETLDTLELKYSILMDVPSSICLKSLRTLHLHYVDFKDNESALNLLS 182

Query: 184 GCPLIEYLEIR 194
           GCP +E L + 
Sbjct: 183 GCPNLENLVVH 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7M1|FBD2_ARATH Putative FBD-associated F-box protein At1g55030 OS=Arabidopsis thaliana GN=At1g55030 PE=4 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 125/270 (46%), Gaps = 31/270 (11%)

Query: 10  DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
           D IS LPEP++  IL  LP K    T +LSK+W+  W+  P +E           +  L 
Sbjct: 9   DMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFL-----RRLDLE 63

Query: 70  SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL-VHWRSER 128
           ++   LL+ +  ++      + LD  N   NA   G  +G+A+   V++LVL V++    
Sbjct: 64  NVTKCLLSHKAPVLQTFSLKVRLDRRN---NAVDIGCLIGIAMTRNVRKLVLEVYFHRGT 120

Query: 129 RNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLISGCPL 187
              P  +++ E+L  LEL    +     +V L SL+ L L  V   DD+++ +L+SGCP 
Sbjct: 121 FTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPN 180

Query: 188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVN 247
           ++             DLV   N       ++S++K   I   ++  LAIH     P    
Sbjct: 181 LQ-------------DLVMRRN-------SSSNVKTFTIAVPSLQRLAIHNGSGTPQHCG 220

Query: 248 VS-SCGNLKCLKFDFLPIEDEWLCNGISKL 276
            + +  +LK LK +     + ++   +S+L
Sbjct: 221 YTINTPSLKYLKLEGSKAFESFMVENVSEL 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMU0|FDL18_ARATH Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana GN=At3g49030 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 13/190 (6%)

Query: 10  DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
           D IS LPE +L  ILS +P + V  T +LSKRW+ +W+  P++     F +P+  +    
Sbjct: 21  DRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTF-DPKYHQTFSE 79

Query: 70  SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW---RS 126
           +L  +L + +  ++     SL+L+     +  ++ G  +  A    V++LVLV +   R 
Sbjct: 80  NLYRSLTSHEASVLE----SLQLNFTRGIDGLNI-GMWIATAYVRHVRKLVLVSFGDVRD 134

Query: 127 ERRNLPEIIF-YVESLHVLEL-SYCKLQQPSENVKLFSLRKLALREVCADDQA-IASLIS 183
           +R      +F + ++L +LE+  Y  L  PS  V L SLR+L L EV   D+A + +L+ 
Sbjct: 135 KRARFRSALFNFNDTLDILEIQDYILLDLPSP-VCLKSLRELRLYEVHFKDEASVCNLLC 193

Query: 184 GCPLIEYLEI 193
           GCP +E L +
Sbjct: 194 GCPSLEVLSV 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 17/203 (8%)

Query: 10  DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
           D IS LP+ IL  ILS+LP +   +T +LS+RW+ VW     +     F   R     + 
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLS----FHRDRPDAPCIN 92

Query: 70  SLEPALLNRQR--KMISIKKFS-LELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS 126
                +L+R R  KM+S +  S      I+ P+  +     +  A+   V+ L L +   
Sbjct: 93  R----ILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDE 147

Query: 127 ERRNLPEIIFYVESLHVLELSY-CKLQ----QPSENVKLFSLRKLALREVCADDQAIASL 181
           ++ ++PE ++   SL  L L + CK       P  +V   SL+ L+L      D++IA +
Sbjct: 148 DKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAII 207

Query: 182 ISGCPLIEYLEIRSCEGLESLDL 204
           +SGCP++E L +  C+ L+ LDL
Sbjct: 208 LSGCPILESLLLFFCKKLKVLDL 230

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.914	0.776	0.369	8e-54
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.914	0.776	0.369	1e-53
224121624	528	predicted protein [Populus trichocarpa]	0.891	0.672	0.314	1e-29
297743071	552	unnamed protein product [Vitis vinifera]	0.972	0.701	0.322	7e-29
147833276	521	hypothetical protein VITISV_011919 [Viti	0.831	0.635	0.335	9e-29
225442254	520	PREDICTED: putative F-box protein At3g44	0.967	0.740	0.324	1e-28
357454743	761	Agglutinin alpha chain [Medicago truncat	0.798	0.417	0.300	5e-26
449458245	575	PREDICTED: uncharacterized protein LOC10	0.839	0.580	0.277	5e-26
449476919	575	PREDICTED: uncharacterized protein LOC10	0.839	0.580	0.274	7e-26
356557323	833	PREDICTED: uncharacterized protein LOC10	0.849	0.405	0.303	2e-25

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  217 bits (552), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 210/379 (55%), Gaps = 15/379 (3%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN-----PRK 63
           +D IS LP+PIL HILSFL  K++ QT +LSKRW  +W TFP  E    F +       K
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL--VL 121
              ++  +E  L    +++  ++KF L  D    P +  +  R +   +ES V+EL  V+
Sbjct: 61  RFHLINFVEQTL----KQLKCLRKFKLHTDF-PEPNSMVVVDRWIDYVLESGVQELEIVV 115

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL 181
                +R NLP+ +F  +SL VL +  CKL    +  KL S++ ++L  V A+D+ +  L
Sbjct: 116 TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRL 175

Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           +S CP I+++++ SC GL +L L   + L  + + N S +     K  N+ A      + 
Sbjct: 176 VSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQ 235

Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
            P  +N+SSC NLK LK   + I D+W     S+ PLLE L+++ CH L S+RISS  LK
Sbjct: 236 -PCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294

Query: 302 TLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEY 361
             IL  C+ + +V+I+TP LS  ++ GD+ISFS NA +LS+  +  S  +  N  WVV+ 
Sbjct: 295 KFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPALSQADIELSPRIFDN-PWVVKQ 353

Query: 362 FEILAMFQKFSKVLNLQCR 380
            E LA F    K L LQ +
Sbjct: 354 IEFLAHFNHL-KSLTLQSQ 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 209/379 (55%), Gaps = 15/379 (3%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN-----PRK 63
           +D IS LP+PIL HILSFL  K++ QT +LSKRW  +W TFP  E    F +       K
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL--VL 121
              ++  +E  L    +++  ++KF L  D    P +  +  R +   +ES V+EL  V+
Sbjct: 61  RFHLINFVEQTL----KQLKCLRKFKLHTDF-PEPNSMVVVDRWIDYVLESGVQELEIVV 115

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL 181
                +R NLP+ +F  +SL VL +  CKL    +  KL S++ ++L  V A+D+ +  L
Sbjct: 116 TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRL 175

Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           +S CP I+++++ SC GL SL L   + L  + + N S +     K  N+ A      + 
Sbjct: 176 VSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQ 235

Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
            P  +N+SSC NLK LK   + I D+W     S+ PLLE L+++ CH L S+RISS  LK
Sbjct: 236 -PCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294

Query: 302 TLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEY 361
             IL  C+ + +V+I+ P LS  ++ GD+ISFS NA +LS+  +  S  +  N  WVV+ 
Sbjct: 295 KFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPALSQADIELSPRIFDN-PWVVKQ 353

Query: 362 FEILAMFQKFSKVLNLQCR 380
            E LA F    K L LQ +
Sbjct: 354 IEFLAHFNHL-KSLTLQSQ 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 30/385 (7%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP--DVEVG--------GMF 58
           +D IS  P+ +LHHILSFLP K+V +T +LSKRWK V  T+P  D   G         M+
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 59  TN--PRKSKEILTSL----EPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAI 112
           +     + +++LT      + ++    +   S++KF L L ++   E +S   + +   I
Sbjct: 61  SENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFL-VLPDLELSSHLDKWVQKVI 119

Query: 113 ESEVKELVL-------VHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLR 164
           E+  KE+         +H++ +  ++P+ IF  +S+ VL+L  C ++ + S  +KL SL+
Sbjct: 120 ENGAKEVDFGIDLPGYLHFK-KPYSMPDAIFAAKSVTVLKLFGCNVKLEESFCIKLHSLQ 178

Query: 165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKR 223
           KLAL+EV  DD  +  +++ CPL+E + +R C GL+ + +  L  LK+  I  + S  + 
Sbjct: 179 KLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPES 238

Query: 224 VEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281
           VEIK+ ++ +     T   + PI V+V +C  LK L      + +  L + + K  +LE 
Sbjct: 239 VEIKSPSLESFHCSFTVRSVKPI-VSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLES 297

Query: 282 LSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS 341
           L +  C  L  V+ISS  LK+L +  C+ ++ +EI TPNL   KY G ++  S       
Sbjct: 298 LRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLINAPSC 357

Query: 342 ETSLCFSSHLMVNIEWVVEYFEILA 366
              + FS    ++I W +   E LA
Sbjct: 358 HWQVEFSLMNTLDILWYMTLKEFLA 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 134/415 (32%), Positives = 211/415 (50%), Gaps = 28/415 (6%)

Query: 4   IGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP-- 61
           + V E D IS LP+ IL  ILS LP KE+A+T LLSK W+++   F  + V  MF +P  
Sbjct: 32  VMVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKL-SPFSSLSVL-MFQSPDF 89

Query: 62  ----RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIES 114
               RK+ ++   + +++ +L  RQ K +S+ +  L L L N  E+ SL    +  A+E 
Sbjct: 90  FHSRRKNFDVSSFINAIDSSLRLRQ-KDVSLARLQLRLHL-NDIESESLIDSWIDAALER 147

Query: 115 EVKEL---VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV 171
           +VKEL   +L     E   LP  IF   ++ VL L  C+L+    +V L +LRKL LR++
Sbjct: 148 KVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKI 206

Query: 172 CADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNV 231
             D+QAI  LIS CPLIE L+I SC  L+ L +  L+NL  +++    +++R+EI   ++
Sbjct: 207 LCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSL 266

Query: 232 NALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
                        +V  +    L+ L      I ++ L N +S +P LE L +    +L 
Sbjct: 267 QYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQ 325

Query: 292 SVRISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
            + IS   LK L L   +  +  +++I+ PNL  F Y G  +  +S   S++ +SL  + 
Sbjct: 326 RIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLREAE 385

Query: 350 HLMVNIEWVVEYFEILAMFQKFSK-----VLNL--QCREECDCSTRTEADPIPPI 397
               N      +F IL + + F K     V+NL  + +EE     +    P PP+
Sbjct: 386 IHFRNCNDYSHFF-ILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRPIPSPPV 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 8   EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP------ 61
           E D IS LP+ IL  IL  LP K+VA++ LLS+ W+++           MF  P      
Sbjct: 4   EQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFS--SLSLLMFQCPDFLESC 61

Query: 62  RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKE 118
           RK+ ++   + +++ +L  R  K +++ +  L LDL +  E+ SL    +  A+E +VKE
Sbjct: 62  RKNTDVSSFINAIDSSLRLRP-KDVNLARLRLHLDL-DDIESESLIDSWIDAALERKVKE 119

Query: 119 LVL-VHWRSERR--NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADD 175
           L L +  RS  +   LP  IF   ++ VL L  C+L+    ++ L +LRKL LR++  D+
Sbjct: 120 LDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLE-ICGDIDLPALRKLCLRQIRCDE 178

Query: 176 QAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALA 235
           QAI  LIS CPLIE L+I SC GL+ L +  L+NL  + ++   +++R+EI   ++  L 
Sbjct: 179 QAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYNLRRIEIDAPSLQHLV 238

Query: 236 IHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI 295
            H   L P ++ ++ C  L+ L      I +++L N  S  P LE L +    +L  + I
Sbjct: 239 YHCGRL-PCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLERLEIDST-RLQRIEI 296

Query: 296 SSPCLKTLILECC--DKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSL 345
           S   LK L L+     K  +++I+ PNL  F Y G  +  +S   S++ +SL
Sbjct: 297 SHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTISSMNTSSL 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/413 (32%), Positives = 210/413 (50%), Gaps = 28/413 (6%)

Query: 6   VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP---- 61
           V E D IS LP+ IL  ILS LP KE+A+T LLSK W+++   F  + V  MF +P    
Sbjct: 2   VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKL-SPFSSLSVL-MFQSPDFFH 59

Query: 62  --RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEV 116
             RK+ ++   + +++ +L  RQ K +S+ +  L L L N  E+ SL    +  A+E +V
Sbjct: 60  SRRKNFDVSSFINAIDSSLRLRQ-KDVSLARLQLRLHL-NDIESESLIDSWIDAALERKV 117

Query: 117 KEL---VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA 173
           KEL   +L     E   LP  IF   ++ VL L  C+L+    +V L +LRKL LR++  
Sbjct: 118 KELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKILC 176

Query: 174 DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNA 233
           D+QAI  LIS CPLIE L+I SC  L+ L +  L+NL  +++    +++R+EI   ++  
Sbjct: 177 DEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQY 236

Query: 234 LAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293
                      +V  +    L+ L      I ++ L N +S +P LE L +    +L  +
Sbjct: 237 FMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQRI 295

Query: 294 RISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHL 351
            IS   LK L L   +  +  +++I+ PNL  F Y G  +  +S   S++ +SL  +   
Sbjct: 296 EISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLREAEIH 355

Query: 352 MVNIEWVVEYFEILAMFQKFSK-----VLNL--QCREECDCSTRTEADPIPPI 397
             N      +F IL + + F K     V+NL  + +EE     +    P PP+
Sbjct: 356 FRNCNDYSHFF-ILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRPIPSPPV 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 174/346 (50%), Gaps = 28/346 (8%)

Query: 6   VLEVDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQTFPDV------EVGGMF 58
           V  VD IS LP+ +++HILSFL   ++  +T  LSKRW+ +W ++  +         G+ 
Sbjct: 38  VESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFAAGIG 97

Query: 59  TNPRKSKE------ILTSLEPALLNRQRKMISIKKFSLEL---DLINSPENASLAGRCLG 109
                +KE      +  SL   L N     + I+K  L +   DL ++P    L    L 
Sbjct: 98  PEDGSNKENLFRQHVADSLHTYLANN----LQIQKLLLHMMSFDLTDAP----LVDSWLT 149

Query: 110 LAIESEVKELVL-VHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLA 167
            A+  +++E+ L + ++   R  LPE++   E+L  L LS C L++   N+ L  L+KL 
Sbjct: 150 SAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRRCG-NIMLPRLQKLY 208

Query: 168 LREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIK 227
           LR+V   +Q + +LIS CP IE L    C GL+ L  ++  +L  + + N + +K   I 
Sbjct: 209 LRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFL-YIHCDSLSRLEIHNCNQLKTAYIF 267

Query: 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287
             N++          P +VN+  C +LK L  +   +  ++  N  +K PLLE L +   
Sbjct: 268 APNLDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNKFPLLEKLDLCIA 327

Query: 288 HKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISF 333
            K+ S+ I + CL+ ++L+ C KL  V+I  P L  F+  G+ + +
Sbjct: 328 DKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPY 373

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 175/353 (49%), Gaps = 19/353 (5%)

Query: 9   VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFP----------DVEVGGM 57
           VD IS LPE  +HHILSFL   KE A+T +LSK+W+  W++F             EVG  
Sbjct: 53  VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVG-- 110

Query: 58  FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVK 117
             + ++ ++ + S++ +L +   + + I K  L +    +PE  S   R + +A E+ + 
Sbjct: 111 LNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRI----TPELVSHLKRWVDMAGENGLG 166

Query: 118 EL-VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ 176
           EL + V    +R  +P  +  +++L  L L         E ++  +L+KL LR +  D Q
Sbjct: 167 ELDIHVETTRKRCKVPLCMHSIKTLSGLRLQGL-YWSSFEALEFNNLQKLYLRRLHVDPQ 225

Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236
            I  L+S CPL+  L I  C GL +L +     L+ + L     ++RVE++  ++     
Sbjct: 226 LIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRVELQVPSLKTFWY 285

Query: 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS 296
                   ++N+ SC +LK L  +   + + +    +   P+LE L++++C KL  + I+
Sbjct: 286 CAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQIIGIA 345

Query: 297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
           +  L++L L CC +L  +++++       YHG  +  +   L L E  +   S
Sbjct: 346 NVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGREMVHAFGCLPLKEAKISLVS 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus]

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 19/353 (5%)

Query: 9   VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFP----------DVEVGGM 57
           VD IS LPE  +HHILSFL   KE A+T +LSK+W+  W++F             EVG  
Sbjct: 53  VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVG-- 110

Query: 58  FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVK 117
             + ++ ++ + S++ +L +   + + I K  L +    +PE  S   R + +A E+ + 
Sbjct: 111 LNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRI----TPELVSHLKRWVDMAGENGLG 166

Query: 118 EL-VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ 176
           EL + V    +R  +P  +  +++L  L L         E ++  +L+KL LR +  D Q
Sbjct: 167 ELDIHVETTRKRCKVPLCMHSIKTLSGLRLQGL-YWSSFEALEFNNLQKLYLRRLHVDPQ 225

Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236
            I  L+S CPL+  L I  C GL +L +     L+ + L     ++R+E++  ++     
Sbjct: 226 LIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRIELQVPSLKTFWY 285

Query: 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS 296
                   ++N+ SC +LK L  +   + + +    +   P+LE L++++C KL  + I+
Sbjct: 286 CAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQIIGIA 345

Query: 297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
           +  L++L L CC +L  +++++       YHG  +  +   L L E  +   S
Sbjct: 346 NVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGREMVHAFGCLPLKEAKISLVS 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 172/352 (48%), Gaps = 14/352 (3%)

Query: 9   VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQT-----FPDVEVG---GMFT 59
           VD IS  P+ ++HHILS L    +  +T +LSKRW+++W +     F + +     G   
Sbjct: 159 VDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIGHED 218

Query: 60  NPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL 119
           +  K       +  +LL    K + I+K  L +   +  E+A      L +AI   +KEL
Sbjct: 219 SSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIYRNIKEL 278

Query: 120 VLVHW--RSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQA 177
            L       E   LP+ +F  ++L  + LS CKL     N+KL  L+KL LR++   +  
Sbjct: 279 DLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGT-CNNIKLPYLQKLYLRKIPLVENF 337

Query: 178 IASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
           I +LIS C  +E L I  C GL+ L + NL  LK   + +   +K+VEI   N++     
Sbjct: 338 IQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQLKKVEISAPNLDTFWYC 397

Query: 238 QTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC-HKLTSVRIS 296
                P +V++  C +LK L  +   +  ++  N  S  PLLE L ++   +K   + IS
Sbjct: 398 GKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPLLEKLDLSMSNNKSRFIIIS 457

Query: 297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSS-NALSLSETSLCF 347
           +P L+   L+ C KL  V +E PNL  F+  G+ + +   +   L++  L F
Sbjct: 458 NPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPWVEIHPFGLTQAKLSF 509

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2151246	258	AT5G02920 "AT5G02920" [Arabido	0.537	0.829	0.3	3.9e-17
TAIR|locus:2143463	307	AT5G03100 "AT5G03100" [Arabido	0.711	0.921	0.295	8e-16
TAIR|locus:2151231	458	AT5G02910 "AT5G02910" [Arabido	0.716	0.622	0.272	3.8e-15
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.532	0.464	0.309	6.3e-15
TAIR|locus:2151261	469	AT5G02930 "AT5G02930" [Arabido	0.545	0.462	0.282	8.9e-15
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.660	0.576	0.288	2.4e-14
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.532	0.455	0.292	4.3e-14
TAIR|locus:2101308	443	AT3G49030 "AT3G49030" [Arabido	0.462	0.415	0.323	4.9e-14
TAIR|locus:2010950	422	AT1G55030 "AT1G55030" [Arabido	0.505	0.476	0.303	5.5e-14
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.713	0.590	0.259	1.3e-13

TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 3.9e-17, P = 3.9e-17
 Identities = 69/230 (30%), Positives = 105/230 (45%)

Query:    10 DGISTLPEPILHHILSFLPFKE-VAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             D IS LP+ ILHHILSF+P    V +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct:    28 DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER 128
              S   + +       S   +S E   ++S          +  A+   V  L L       
Sbjct:    88 ASYTASKITSFHLCTS---YSYEAGHVHSS---------IEFAMSHNVDNLSLAFSSFPP 135

Query:   129 RN-LPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
              N  P+  +   SL  +EL    L  PS  V   SLR L+L      D++   ++SGCP+
Sbjct:   136 CNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPI 194

Query:   188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
             +E L ++ CE L+ LDL     L  + +   S   R  +++  + A  IH
Sbjct:   195 LESLSLKFCESLKYLDLSKSLRLTRLEIERRSCF-REPMQSMQIVAPHIH 243

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2143463 AT5G03100 "AT5G03100" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 93/315 (29%), Positives = 139/315 (44%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS+LP+ ILHHIL+  P K   +T +LSKRWK VW   P + +     +P    + L
Sbjct:     8 VDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDPDSLNKTL 67

Query:    69 TSLEPALLNRQRKMISIKKFSLELDL-INSPENASLAGRCLGLAIESEVKELVLVHWRSE 127
             +S              IK F + +   +  PE        + LA+ S   E V + + S 
Sbjct:    68 SSYSTP---------KIKSFDVTISRDVTVPE----IDTWINLAL-SRKAENVSLRFTSH 113

Query:   128 RRNLPEIIFYVESLHVLELS--YCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC 185
              R   +  F   SL  L L+  YC L  P   V   SLR L+L      D +IA +++GC
Sbjct:   114 YR-FRDTFFINSSLKQLSLTLVYCILN-PKCVVSWSSLRNLSLNRCKVSDDSIAKILTGC 171

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKRVEIKTSNVNALAIHQTYLFPI 244
              L+E L +  C+ L  LDL    +L+ + IL +    +R  I   ++  L + + Y  P 
Sbjct:   172 SLLESLTLNLCDRLNDLDLSKSLSLRRLEILGDRWTPER--IVAPHIRYLRL-ENYQRPS 228

Query:   245 E-VNVSSC--GNLKCLKFDFLPIEDEWLCN-GISKLPLLEYLSMTKCHKLTSVRISSPCL 300
               V+VSS    NL   K     + D + C      L  +   ++ K   +  + I    L
Sbjct:   229 TLVDVSSLTEANLGLSKH----VLDYFTCEMETESLQYMVRQTVVKLQNIKKLTIGGIFL 284

Query:   301 KTLIL-ECCDKLIQV 314
             + L L E C   + V
Sbjct:   285 QILSLAELCGVTLPV 299

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151231 AT5G02910 "AT5G02910" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
 Identities = 86/316 (27%), Positives = 140/316 (44%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             +D IS+LP+ ILHHILS +P K   +T LLSKRW+ VW   P + +     +P    + L
Sbjct:    10 MDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPSLSIDCRRADPNSIDKTL 69

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVH--WRS 126
             +               I  F L   L+N  +  S+ G C+  AI    ++L L    +R 
Sbjct:    70 SFFSAP---------KITSFHLHTTLLNRID--SVNG-CIEFAISHNAEKLSLESRDYRV 117

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
                  P+  +   S+  L +    +   P   V   SL+ L+L      D++   ++SG 
Sbjct:   118 RNYKFPDFFYTNSSVKQLFVDSGSVHLIPRCTVSWTSLKNLSLSNCTLSDESFLKILSGS 177

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD--IKRVEIKTSNVNALAIHQTYLFP 243
             PL+E LE+  C     LDL    +L+ +  ++ SD  +   +I   +++ L +  + L  
Sbjct:   178 PLLESLELLYCAEYMCLDLSQSQHLRRLE-IDRSDWFMGPTKIVAPHLHCLRLRHSRLPC 236

Query:   244 IEVNVSSC---------GNLKCLKFDFLP---IEDEWLCNGISKLPLL-EYLSMTKCHKL 290
               V+VSS          G+LK +   FL    ++   +   + KL +   +L M     L
Sbjct:   237 SLVDVSSLTEADLNIYFGDLKTVTAGFLQHNVVKMLQMLQNVEKLTIGGTFLQMLSLAAL 296

Query:   291 TSVRISSPCLKTLILE 306
               V   +  +KTL LE
Sbjct:   297 CGVPFPTLKVKTLTLE 312

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 73/236 (30%), Positives = 112/236 (47%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++           + LT
Sbjct:    27 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIT---LKHGAMNQTLT 83

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL-VLVH--WRS 126
             S    +         I  F L +DL NS          +  A+   V+ L V V     S
Sbjct:    84 SYTAPI---------ITSFKLVMDL-NS-NTVPQVDSWIEFALSRNVQNLSVFVRDFTYS 132

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
             +    P+I +   SL +L+++       P+  V   SLR L LR     D++I +++SGC
Sbjct:   133 KTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHNILSGC 192

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             P++E L + +C  LE LDL    NL+ +      DI +   +T  V  +A H  YL
Sbjct:   193 PILESLTLDTCRLLERLDLSKSPNLRRL------DINQQYRRTGPVAIVAPHIYYL 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151261 AT5G02930 "AT5G02930" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 8.9e-15, P = 8.9e-15
 Identities = 65/230 (28%), Positives = 109/230 (47%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS LP+ +L HI S++P +   +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct:    27 VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKTL 86

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SE 127
              S   + +   +      ++S E D  +   N+S+       A+   V +L L   R S 
Sbjct:    87 ASYTASKI---KSFHLCTRYSYEADTHHV--NSSIE-----FAMSHNVDDLSLAFRRCSP 136

Query:   128 RRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
               N  +  +   SL  +EL Y  L  P   V   SL+ L+L +    D++   ++SGCP+
Sbjct:   137 FYNFDDCFYTNSSLKRVELRYVDLM-PRCMVSWTSLKNLSLTDCTMSDESFLEILSGCPI 195

Query:   188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
             +E L ++ C  L+ L+L     L  + +   S I R  + +  + A  IH
Sbjct:   196 LESLSLKFCMSLKYLNLSKSLRLTRLEIERISYI-RAPMLSMQIVAPYIH 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 84/291 (28%), Positives = 134/291 (46%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS+LP+ IL HILSF+P K    T LLSKRW+ VW   P +             E L
Sbjct:    30 VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR--S 126
             T    +      KM+   +F L   LIN   N       +  A+   V  L L  W   +
Sbjct:    90 TRYTAS------KMM---RFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVA 137

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCP 186
              +   P+  F++ S  + +L+   +   S+ +    L+KL L      D+++A+++ GCP
Sbjct:   138 NKFKFPDF-FHINS-SLKQLTV--VLDFSDTMIAICLKKLYLSTCLLSDESMANILFGCP 193

Query:   187 LIEYLEIRSCEGLESLDLVNLSNLKEI-ILVN--TSDIKRVEIKTSNVNALAIHQTYLFP 243
             ++E L +  C GL  LDL     L+ + I  N    ++  ++I   + + L +  + L  
Sbjct:   194 ILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVAPHTHCLRLRNSKLPC 253

Query:   244 IEVNVSSCGNLK---CLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
               V+VSS    K   C+      I+ ++L   ++ L +LE L   +  KLT
Sbjct:   254 SLVDVSSLKEAKLNICIDSFSKTIKADFL--QVTLLKMLEKLHNVE--KLT 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 4.3e-14, P = 4.3e-14
 Identities = 69/236 (29%), Positives = 112/236 (47%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++        ++ + LT
Sbjct:    28 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIK---LKHGETNQTLT 84

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL-VLVH--WRS 126
             S    +         I  F L +DL  +          +  A+   V+ L V V     +
Sbjct:    85 SYTAPI---------ITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYT 133

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
             +    P+I +   SL  L+++       P+  V   SLR L LR     D+++ +++SGC
Sbjct:   134 KTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGC 193

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             P++E L + +C  LE LDL    NL+ +      DI R   +T  +  +A H  YL
Sbjct:   194 PILESLTLDTCRLLERLDLSKSPNLRRL------DINRQYRRTGPIAIVAPHIYYL 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101308 AT3G49030 "AT3G49030" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 64/198 (32%), Positives = 106/198 (53%)

Query:     2 MRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP 61
             +R  V E D IS LPE +L  ILS +P + V  T +LSKRW+ +W+  P++     F +P
Sbjct:    14 IRDAVKE-DRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTF-DP 71

Query:    62 RKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL 121
             +  +    +L  +L + +  ++     SL+L+     +  ++ G  +  A    V++LVL
Sbjct:    72 KYHQTFSENLYRSLTSHEASVLE----SLQLNFTRGIDGLNI-GMWIATAYVRHVRKLVL 126

Query:   122 VHW---RSERRNLPEIIF-YVESLHVLELS-YCKLQQPSENVKLFSLRKLALREVCADDQ 176
             V +   R +R      +F + ++L +LE+  Y  L  PS  V L SLR+L L EV   D+
Sbjct:   127 VSFGDVRDKRARFRSALFNFNDTLDILEIQDYILLDLPSP-VCLKSLRELRLYEVHFKDE 185

Query:   177 A-IASLISGCPLIEYLEI 193
             A + +L+ GCP +E L +
Sbjct:   186 ASVCNLLCGCPSLEVLSV 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010950 AT1G55030 "AT1G55030" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 65/214 (30%), Positives = 112/214 (52%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D IS LPEP++  IL  LP K    T +LSK+W+  W+  P +E        R   E +T
Sbjct:     9 DMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFLR--RLDLENVT 66

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL-VHWRSER 128
                  LL+ +  ++  + FSL++ L +   NA   G  +G+A+   V++LVL V++    
Sbjct:    67 K---CLLSHKAPVL--QTFSLKVRL-DRRNNAVDIGCLIGIAMTRNVRKLVLEVYFHRGT 120

Query:   129 RNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLISGCPL 187
                P  +++ E+L  LEL    +     +V L SL+ L L  V   DD+++ +L+SGCP 
Sbjct:   121 FTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPN 180

Query:   188 IEYLEIR--SCEGLESLDLVNLSNLKEIILVNTS 219
             ++ L +R  S   +++  +  + +L+ + + N S
Sbjct:   181 LQDLVMRRNSSSNVKTFTIA-VPSLQRLAIHNGS 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 79/304 (25%), Positives = 138/304 (45%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D IS LP+ IL  ILS+LP +   +T +LS+RW+ VW     +     F   R     + 
Sbjct:    37 DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLS----FHRDRPDAPCIN 92

Query:    70 SLEPALLNRQR--KMISIKKFSL-ELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS 126
              +    L+R R  KM+S +  S      I+ P+  +     +  A+   V+ L L +   
Sbjct:    93 RI----LDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDE 147

Query:   127 ERRNLPEIIFYVESLHVLELSY-CKLQ----QPSENVKLFSLRKLALREVCADDQAIASL 181
             ++ ++PE ++   SL  L L + CK       P  +V   SL+ L+L      D++IA +
Sbjct:   148 DKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAII 207

Query:   182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             +SGCP++E L +  C+ L+ LDL     L  + +     ++  ++   ++  L +  +  
Sbjct:   208 LSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAPHIRCLRLINSEK 267

Query:   242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
                 V+VSS    + L      I D  L     +  +++ L   KC  +  + + +  LK
Sbjct:   268 PCALVDVSSLSQAE-LDITAYAIVDNKLEADFHQTMVVKMLE--KCQNVEKLTLGANFLK 324

Query:   302 TLIL 305
              L L
Sbjct:   325 MLSL 328

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1460040 hypothetical protein (528 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
pfam00646	48	pfam00646, F-box, F-box domain	9e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP 50
          +  LP+ +L  ILS L  K++ +  L+SKRW+ +  +  
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLK 41

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
          +S LP+ IL  I S+L  +++ +  L+ +RW+++
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.81
KOG4341	483	consensus F-box protein containing LRR [General fu	99.72
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.39
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.37
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.13
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.07
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.02
KOG4341	483	consensus F-box protein containing LRR [General fu	98.98
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.9
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.54
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.51
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.45
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.39
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.37
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.31
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.11
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.45
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.39
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.38
PRK15386	426	type III secretion protein GogB; Provisional	97.35
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.28
PRK15386	426	type III secretion protein GogB; Provisional	97.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.13
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.5
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.64
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.58
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.53
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.15
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.04
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.85
PLN03150	623	hypothetical protein; Provisional	94.67
PLN03150	623	hypothetical protein; Provisional	94.03
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	89.77
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	89.2
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	89.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.13
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	85.82
PF13013	109	F-box-like_2: F-box-like domain	85.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	85.21
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.74
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	83.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	83.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.28

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.4e-21  Score=167.05  Aligned_cols=275  Identities=20%  Similarity=0.229  Sum_probs=176.2

Q ss_pred             CCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhcccce---eeecCcCCCCchhhHHHHHHHHHHhccccCCCCceEE
Q 015886           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPD---VEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKF   88 (398)
Q Consensus        12 i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~~~~---l~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~l   88 (398)
                      +..|||||+..||+.|+.+++.+.+.|||||.++-+.-+.   +++...-..       .....+.+      .+.+..+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~-------p~~l~~l~------~rgV~v~  164 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH-------PDVLGRLL------SRGVIVF  164 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC-------hhHHHHHH------hCCeEEE
Confidence            6789999999999999999999999999999876432211   222211111       12222222      1244444


Q ss_pred             EEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceE
Q 015886           89 SLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKL  166 (398)
Q Consensus        89 ~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L  166 (398)
                      ++-  +...  ....+.. ....+..+++.++++........+...+..|.+|+.|+|.|..+.++  .....-.+|+.|
T Consensus       165 Rla--r~~~--~~prlae-~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  165 RLA--RSFM--DQPRLAE-HFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             Ecc--hhhh--cCchhhh-hhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence            432  1110  0110111 11223447899999987666667777788899999999999988776  445566789999


Q ss_pred             EEEEEEe-CHHHHHHHHhcCccccEEEeeecCCccee---ecCC-CCCCceEEEecC-CCcceeeecccCceEEEEeeee
Q 015886          167 ALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVN-LSNLKEIILVNT-SDIKRVEIKTSNVNALAIHQTY  240 (398)
Q Consensus       167 ~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~---~i~~-~~~L~~L~l~~~-~~l~~~~~~~p~L~~l~l~~~~  240 (398)
                      +|+.+.- +..+++.++++|..|.+|++++|......   .+.+ -++|+.|++++| .++..-.+              
T Consensus       240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~--------------  305 (419)
T KOG2120|consen  240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL--------------  305 (419)
T ss_pred             ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH--------------
Confidence            9998876 88888888999999999999998765432   1111 267777777776 22211111              


Q ss_pred             ccceeEeecCCCCCceEEeeccC-CchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEecccccccee--
Q 015886          241 LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQ--  313 (398)
Q Consensus       241 ~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~~--  313 (398)
                          ......+|+|.+|+|+.+. +.+..+. .+..|+-|++|.++.|..+..--    ...|.|.+|++.+|-.-+.  
T Consensus       306 ----~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~me  380 (419)
T KOG2120|consen  306 ----STLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTME  380 (419)
T ss_pred             ----HHHHHhCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHH
Confidence                1123567777777777544 3443333 45678999999999996553221    2678999999999887632  


Q ss_pred             -ccccCCCcce
Q 015886          314 -VEIETPNLSI  323 (398)
Q Consensus       314 -~~~~~p~L~~  323 (398)
                       +...+|+|+.
T Consensus       381 l~~e~~~~lki  391 (419)
T KOG2120|consen  381 LLKEMLSHLKI  391 (419)
T ss_pred             HHHHhCccccc
Confidence             2355666553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.72  E-value=1e-19  Score=162.32  Aligned_cols=300  Identities=19%  Similarity=0.252  Sum_probs=173.2

Q ss_pred             CCccCC-CCCHHHHHHHhccCChhHHHHHhhcccchhhh------hcccceeeecCcCCCCchhhHHHHHHHHHHhcccc
Q 015886            8 EVDGIS-TLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQR   80 (398)
Q Consensus         8 ~~D~i~-~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~   80 (398)
                      +.+.++ .||.|++.+|||+|+.+.+.|++++|+-|..+      |..+....|..+..        ...|...+   ++
T Consensus        67 ~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------g~VV~~~~---~R  135 (483)
T KOG4341|consen   67 DNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------GGVVENMI---SR  135 (483)
T ss_pred             hcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC--------CcceehHh---hh
Confidence            444554 69999999999999999999999999999864      44332222221111        11122222   11


Q ss_pred             CCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCC-ccccCCccccCCCCeeEEEEeccccCCC----C
Q 015886           81 KMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP----S  155 (398)
Q Consensus        81 ~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~----~  155 (398)
                      .+                               ..+++|.+..+.. ....+-.....|+++++|.+.+|.....    .
T Consensus       136 cg-------------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s  184 (483)
T KOG4341|consen  136 CG-------------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS  184 (483)
T ss_pred             hc-------------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH
Confidence            12                               2455555555322 2223333455677777777777653222    3


Q ss_pred             ccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcce----eecCCCCCCceEEEecC------------
Q 015886          156 ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLES----LDLVNLSNLKEIILVNT------------  218 (398)
Q Consensus       156 ~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~----~~i~~~~~L~~L~l~~~------------  218 (398)
                      ....|++|+.|+|..|.. ++..+..+..+||+|+.|++++|+.+..    ...+++..++.+...+|            
T Consensus       185 la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~  264 (483)
T KOG4341|consen  185 LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA  264 (483)
T ss_pred             HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh
Confidence            445677788887777555 7777777777888888888887766543    12233444555545555            


Q ss_pred             --------------CCcceee-----ecccCceEEEEeeeeccce---eEeecCCCCCceEEeeccC-CchHHHhhhhcC
Q 015886          219 --------------SDIKRVE-----IKTSNVNALAIHQTYLFPI---EVNVSSCGNLKCLKFDFLP-IEDEWLCNGISK  275 (398)
Q Consensus       219 --------------~~l~~~~-----~~~p~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~  275 (398)
                                    ..+....     -.+-.|+.+.++++...+.   .....++++|+.|.++.+. +++..+..+-.+
T Consensus       265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn  344 (483)
T KOG4341|consen  265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN  344 (483)
T ss_pred             ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence                          1111111     1233444444444442111   1112456677777776554 556666666667


Q ss_pred             CCCCcEEeccCcccc-----ccccccccccceEeccccccceec--------cccCCCcceEEEeccce------eeccc
Q 015886          276 LPLLEYLSMTKCHKL-----TSVRISSPCLKTLILECCDKLIQV--------EIETPNLSIFKYHGDLI------SFSSN  336 (398)
Q Consensus       276 ~~~L~~L~l~~c~~~-----~~~~~~~~~L~~L~l~~c~~~~~~--------~~~~p~L~~l~~~~~~~------~~~~~  336 (398)
                      ++.|+.|++..|...     .+...+++.|+.|.++.|..++.-        ......|+.+++.+++.      ..+..
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            777777777776332     233446777788877777776321        12334567777777665      55666


Q ss_pred             cccccceeeeecc
Q 015886          337 ALSLSETSLCFSS  349 (398)
Q Consensus       337 ~~~L~~l~i~~~~  349 (398)
                      +++||++.++.+.
T Consensus       425 c~~Leri~l~~~q  437 (483)
T KOG4341|consen  425 CRNLERIELIDCQ  437 (483)
T ss_pred             Ccccceeeeechh
Confidence            7788887775553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.39  E-value=9.2e-13  Score=139.63  Aligned_cols=233  Identities=15%  Similarity=0.157  Sum_probs=113.5

Q ss_pred             CCCeEEEEEecCCccccCCcccc-CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      ++++.|+++.+.. ...+|..++ .+++|++|+++++.+........+++|++|+|+++.++.. +...+..+++|+.|+
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~  170 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence            5777777765321 234666555 6777777777777664333334567777777777665322 122245667777777


Q ss_pred             eeecCCccee--ecCCCCCCceEEEecCCCcceee---ecccCceEEEEeeeec-cceeEeecCCCCCceEEeeccCCch
Q 015886          193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIED  266 (398)
Q Consensus       193 l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~  266 (398)
                      +++|.....+  .+..+++|+.|++.+|.....++   ...++|+.|+++++.. ......++.+++|++|+++++.+..
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence            7666432211  23344566666665552111111   1344555555554431 1112223444555555554444332


Q ss_pred             HHHhhhhcC------------------------CCCCcEEeccCcccccccc---ccccccceEeccccccce---eccc
Q 015886          267 EWLCNGISK------------------------LPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI---QVEI  316 (398)
Q Consensus       267 ~~~~~~~~~------------------------~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~~---~~~~  316 (398)
                      . +...+..                        +++|+.|++++|.....++   ...++|+.|++++|....   ....
T Consensus       251 ~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        251 P-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             c-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            1 1112333                        4455555555442221221   134455555555554321   1223


Q ss_pred             cCCCcceEEEeccce-----eeccccccccceeeeecc
Q 015886          317 ETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       317 ~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~  349 (398)
                      .+|+|+.|.+.++..     ..+...++|+.++++.+.
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            455566666655543     334445566666665443

>PLN03210 Resistant to P

Probab=99.37  E-value=2.7e-12  Score=136.94  Aligned_cols=93  Identities=24%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc--cccccceEeccccccceeccccCCCcceEEEecc
Q 015886          252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGD  329 (398)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~  329 (398)
                      ++|+.|+++++..... +...+.++++|+.|++++|..++.++.  .+++|++|++++|..+..+....++|+.|.+.+.
T Consensus       778 ~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             ccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC
Confidence            3555666655432222 222356778888888888877777665  4678888888888776544433445555555554


Q ss_pred             ce----eeccccccccceee
Q 015886          330 LI----SFSSNALSLSETSL  345 (398)
Q Consensus       330 ~~----~~~~~~~~L~~l~i  345 (398)
                      .+    ..+.+.++|+.+.+
T Consensus       857 ~i~~iP~si~~l~~L~~L~L  876 (1153)
T PLN03210        857 GIEEVPWWIEKFSNLSFLDM  876 (1153)
T ss_pred             CCccChHHHhcCCCCCEEEC
Confidence            43    23334444444444

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.25  E-value=1.5e-11  Score=130.49  Aligned_cols=232  Identities=16%  Similarity=0.123  Sum_probs=167.6

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--C-ccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--S-ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      .+++.|++..... ...++..+..+++|+.|+|+++.+...  . ....+++|++|+|+++.+....-   ....++|+.
T Consensus        69 ~~v~~L~L~~~~i-~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCc-cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCE
Confidence            3788888876332 224566677889999999999987532  2 23488999999999998742211   135799999


Q ss_pred             EEeeecCCccee--ecCCCCCCceEEEecCCCcceee---ecccCceEEEEeeeec-cceeEeecCCCCCceEEeeccCC
Q 015886          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       191 L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      |++++|.....+  .+..+++|+.|++.+|.....++   ...++|++|+++++.. ......++.+++|+.|+++++.+
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            999998654322  35668999999999983222222   3678999999998872 22334678899999999998887


Q ss_pred             chHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEecccccccee---ccccCCCcceEEEeccce-----ee
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI-----SF  333 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~~---~~~~~p~L~~l~~~~~~~-----~~  333 (398)
                      .... ...+..+++|++|++++|.....++.   .+++|++|++++|.....   .....++|+.|.++++..     ..
T Consensus       225 ~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  303 (968)
T PLN00113        225 SGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL  303 (968)
T ss_pred             CCcC-ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence            6533 23357789999999999754333333   567899999999876432   234567899999988765     45


Q ss_pred             ccccccccceeeeeccc
Q 015886          334 SSNALSLSETSLCFSSH  350 (398)
Q Consensus       334 ~~~~~~L~~l~i~~~~~  350 (398)
                      +.+.++|+.+.+..+..
T Consensus       304 ~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        304 VIQLQNLEILHLFSNNF  320 (968)
T ss_pred             HcCCCCCcEEECCCCcc
Confidence            67789999999976643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.1e-12  Score=118.45  Aligned_cols=191  Identities=16%  Similarity=0.157  Sum_probs=137.4

Q ss_pred             CCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcc---eeecCCCCC
Q 015886          137 YVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLE---SLDLVNLSN  209 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~---~~~i~~~~~  209 (398)
                      +.++|++..|.++.+...   .....||+++.|+|+++-+ .-..+..++.-+|+||.|+++.+....   +.....+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            457788888988887655   3677899999999999988 777888899999999999999875432   222224689


Q ss_pred             CceEEEecC----CCcceeeecccCceEEEEeeee-ccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEec
Q 015886          210 LKEIILVNT----SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (398)
Q Consensus       210 L~~L~l~~~----~~l~~~~~~~p~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  284 (398)
                      ||.|.++.|    .....+...+|+|+.|++.++. ..........+..|+.|+|+++.+.+.........+|.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            999999999    3344555689999999999885 11112233456789999999988777554555778999999999


Q ss_pred             cCccccccc----------cccccccceEecccccc--ceec--cccCCCcceEEEec
Q 015886          285 TKCHKLTSV----------RISSPCLKTLILECCDK--LIQV--EIETPNLSIFKYHG  328 (398)
Q Consensus       285 ~~c~~~~~~----------~~~~~~L~~L~l~~c~~--~~~~--~~~~p~L~~l~~~~  328 (398)
                      +.| .+.++          ...+|+|++|++.....  ...+  ....++|+.+.+.+
T Consensus       279 s~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  279 SST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             ccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence            996 22221          22678888888887665  2222  13344555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=4.3e-12  Score=109.36  Aligned_cols=219  Identities=19%  Similarity=0.188  Sum_probs=122.3

Q ss_pred             HHHhCCCeEEEEEecCCccccCCccccCC-CCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcC
Q 015886          110 LAIESEVKELVLVHWRSERRNLPEIIFYV-ESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGC  185 (398)
Q Consensus       110 ~~~~~~l~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~c  185 (398)
                      ....+++..+.+.........+.+..... ..|++|+|++..+...   .....|.+|+.|+|.++..+|..... ++.-
T Consensus       155 ~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN  233 (419)
T KOG2120|consen  155 RLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKN  233 (419)
T ss_pred             HHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhcc
Confidence            34556887777664221112222221111 3456666665444322   23344555555555555554444333 3333


Q ss_pred             ccccEEEeeecCCcceee----cCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeec-CCCCCceEEee
Q 015886          186 PLIEYLEIRSCEGLESLD----LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVS-SCGNLKCLKFD  260 (398)
Q Consensus       186 p~Le~L~l~~~~~~~~~~----i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~  260 (398)
                      .+|+.|+++.|.++....    +++|++|..|+++.|....+..                   .+.+. --++|+.|+|+
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V-------------------tv~V~hise~l~~LNls  294 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV-------------------TVAVAHISETLTQLNLS  294 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-------------------hHHHhhhchhhhhhhhh
Confidence            555555555555553322    2334555555555552221111                   11111 12456666666


Q ss_pred             ccC--CchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccce-e-c--cccCCCcceEEEeccc
Q 015886          261 FLP--IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI-Q-V--EIETPNLSIFKYHGDL  330 (398)
Q Consensus       261 ~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~-~-~--~~~~p~L~~l~~~~~~  330 (398)
                      |+.  +....+..+...||+|.+|+++.|..++.-.    ..++.|++|+++.|..+. + +  ....|.|.+|++.|+-
T Consensus       295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            543  3344567777899999999999997766532    278999999999999983 2 2  3778999999999975


Q ss_pred             e-----eeccccccccceeeeec
Q 015886          331 I-----SFSSNALSLSETSLCFS  348 (398)
Q Consensus       331 ~-----~~~~~~~~L~~l~i~~~  348 (398)
                      .     ...+.+++|+--.-+++
T Consensus       375 sdt~mel~~e~~~~lkin~q~~~  397 (419)
T KOG2120|consen  375 SDTTMELLKEMLSHLKINCQHFN  397 (419)
T ss_pred             CchHHHHHHHhCccccccceeee
Confidence            5     44455666664444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.13  E-value=7.2e-12  Score=117.12  Aligned_cols=80  Identities=18%  Similarity=0.162  Sum_probs=44.2

Q ss_pred             CCCeEEEEEecCCccccCCcccc-CCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      +-++.|+++....  .++|..-+ .-.++++|+|.++++...  ..+..+.+|..|.|+.++++.-. ...+.+.|.|+.
T Consensus       149 ~alrslDLSrN~i--s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  149 PALRSLDLSRNLI--SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLES  225 (873)
T ss_pred             hhhhhhhhhhchh--hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhh
Confidence            4566777665322  23332222 235677777777766543  45555667777777776663221 122445667777


Q ss_pred             EEeeec
Q 015886          191 LEIRSC  196 (398)
Q Consensus       191 L~l~~~  196 (398)
                      |+|..+
T Consensus       226 LdLnrN  231 (873)
T KOG4194|consen  226 LDLNRN  231 (873)
T ss_pred             hhcccc
Confidence            666654

>PLN03210 Resistant to P

Probab=99.07  E-value=2.9e-10  Score=121.57  Aligned_cols=211  Identities=19%  Similarity=0.208  Sum_probs=119.5

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCC--CCccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      .++++.++++.+. ....+| .+..+++|+.|++.+|....  +.....+++|+.|++++|..-. .+... ..+++|+.
T Consensus       633 l~~Lk~L~Ls~~~-~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~-i~l~sL~~  708 (1153)
T PLN03210        633 LTGLRNIDLRGSK-NLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTG-INLKSLYR  708 (1153)
T ss_pred             CCCCCEEECCCCC-CcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCc-CCCCCCCE
Confidence            3578888887632 223444 35567888888888875322  2445677888888888764310 11110 14677888


Q ss_pred             EEeeecCCcceeecCCCCCCceEEEecCCCcceee---------------------------------ecccCceEEEEe
Q 015886          191 LEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE---------------------------------IKTSNVNALAIH  237 (398)
Q Consensus       191 L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~---------------------------------~~~p~L~~l~l~  237 (398)
                      |++.+|..+..+.-. .++|+.|.+.++. +..++                                 ...++|++|+++
T Consensus       709 L~Lsgc~~L~~~p~~-~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls  786 (1153)
T PLN03210        709 LNLSGCSRLKSFPDI-STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS  786 (1153)
T ss_pred             EeCCCCCCccccccc-cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence            888877655433211 1344555444431 11111                                 123577777777


Q ss_pred             eee-ccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccccccccceEeccccccc--eec
Q 015886          238 QTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKL--IQV  314 (398)
Q Consensus       238 ~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~--~~~  314 (398)
                      ++. .......++++++|+.|++.+|..... +.... .+++|+.|++++|..+..++...++|+.|+++++...  ..-
T Consensus       787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s  864 (1153)
T PLN03210        787 DIPSLVELPSSIQNLHKLEHLEIENCINLET-LPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW  864 (1153)
T ss_pred             CCCCccccChhhhCCCCCCEEECCCCCCcCe-eCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence            765 222334567889999999987643221 11111 5788999999998777766655556666666554321  111


Q ss_pred             cccCCCcceEEEeccce
Q 015886          315 EIETPNLSIFKYHGDLI  331 (398)
Q Consensus       315 ~~~~p~L~~l~~~~~~~  331 (398)
                      ...+++|+.|.+.++..
T Consensus       865 i~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             HhcCCCCCEEECCCCCC
Confidence            23445566666555433

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.04  E-value=2.7e-11  Score=113.30  Aligned_cols=242  Identities=17%  Similarity=0.174  Sum_probs=129.0

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeC-HHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCAD-DQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~  190 (398)
                      .++++|.+........+... +.+..+|..|+|+.+++...  ..+.++|.|+.|+|..+.+. -+.+.  +.+.|.|+.
T Consensus       173 ~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~n  249 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQN  249 (873)
T ss_pred             CCceEEeecccccccccccc-ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhh
Confidence            37899998875444333332 33456889999999887544  55667899999999888772 22322  456777777


Q ss_pred             EEeeecCCc--ceeecCCCCCCceEEEecC-----------------------CCcceeee----cccCceEEEEeeeec
Q 015886          191 LEIRSCEGL--ESLDLVNLSNLKEIILVNT-----------------------SDIKRVEI----KTSNVNALAIHQTYL  241 (398)
Q Consensus       191 L~l~~~~~~--~~~~i~~~~~L~~L~l~~~-----------------------~~l~~~~~----~~p~L~~l~l~~~~~  241 (398)
                      |.+..+...  +.=.+..+.++++|++..+                       ..+..+.+    .++.|+.|+++.+..
T Consensus       250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            777665322  1101112344444444443                       02333332    344555555544431


Q ss_pred             cc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccc---ccc---ccccccccceEeccccccc---
Q 015886          242 FP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK---LTS---VRISSPCLKTLILECCDKL---  311 (398)
Q Consensus       242 ~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~---~~~---~~~~~~~L~~L~l~~c~~~---  311 (398)
                      .. ..-.+..+..|+.|.|+.+.++.- -...+..+.+|+.|+|++...   +++   ....++.|++|.+.+...-   
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence            11 111233344555555554443321 122234556777777766311   111   1124667777777665542   


Q ss_pred             eeccccCCCcceEEEeccce-----eeccccccccceeeeeccc-chhhHHHHHH
Q 015886          312 IQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSH-LMVNIEWVVE  360 (398)
Q Consensus       312 ~~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~-~~~~~~~~~~  360 (398)
                      +......++|+.|++.+..+     ..++.. +|+++.+++.+. -.+..+|+..
T Consensus       409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~q  462 (873)
T KOG4194|consen  409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQ  462 (873)
T ss_pred             hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHH
Confidence            23445667777777766665     444444 777777755542 2345566543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.02  E-value=1e-10  Score=108.00  Aligned_cols=172  Identities=18%  Similarity=0.169  Sum_probs=94.0

Q ss_pred             CCeEEEEEecCCcc---ccCCccccCCCCeeEEEEeccccCC--C------CccccCcccceEEEEEEEeCH---HHHHH
Q 015886          115 EVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQ--P------SENVKLFSLRKLALREVCADD---QAIAS  180 (398)
Q Consensus       115 ~l~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~l~~--~------~~~~~~~~L~~L~L~~~~~~~---~~l~~  180 (398)
                      +++++.+..+....   ..++..+...++|++|.+.++.+..  .      .....+++|+.|+++++.+..   ..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            58888888754322   2345555566778888888776541  1      123346688888888777742   23333


Q ss_pred             HHhcCccccEEEeeecCCcc----ee--ecCCC-CCCceEEEecCCCc----ceee---ecccCceEEEEeeeeccc---
Q 015886          181 LISGCPLIEYLEIRSCEGLE----SL--DLVNL-SNLKEIILVNTSDI----KRVE---IKTSNVNALAIHQTYLFP---  243 (398)
Q Consensus       181 l~~~cp~Le~L~l~~~~~~~----~~--~i~~~-~~L~~L~l~~~~~l----~~~~---~~~p~L~~l~l~~~~~~~---  243 (398)
                      +... ++|++|++.+|....    .+  .+..+ ++|+.|.+.+|.-.    ..+.   ..+++|++|+++++....   
T Consensus       104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            3444 668888887775431    00  12234 67777777777211    1111   133456666666654110   


Q ss_pred             --eeEeecCCCCCceEEeeccCCchHH---HhhhhcCCCCCcEEeccCc
Q 015886          244 --IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       244 --~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c  287 (398)
                        ....+..+++|++|+++++.+.+..   +...+..+++|+.|++++|
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence              0011233456666666666655432   2333455666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.98  E-value=1.4e-11  Score=110.85  Aligned_cols=211  Identities=20%  Similarity=0.262  Sum_probs=143.1

Q ss_pred             CCeeEEEEeccccCCC----CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceeec----CCCCC
Q 015886          139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDL----VNLSN  209 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i----~~~~~  209 (398)
                      .-|+.|.+.||+-...    .....||+++.|.+.+|.. +|..+.++...|+.|+.|++..|..++...+    .+|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            5699999999854322    4567899999999999988 9999999999999999999999988865433    35899


Q ss_pred             CceEEEecCC-----CcceeeecccCceEEEEeeeeccceeEe---ecC--------------------------CCCCc
Q 015886          210 LKEIILVNTS-----DIKRVEIKTSNVNALAIHQTYLFPIEVN---VSS--------------------------CGNLK  255 (398)
Q Consensus       210 L~~L~l~~~~-----~l~~~~~~~p~L~~l~l~~~~~~~~~~~---~~~--------------------------~~~L~  255 (398)
                      |++|+++.|+     +++.+.-.+.+++.+...||........   -..                          +..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            9999999993     4444555777788887777762211000   011                          33444


Q ss_pred             eEEeecc-CCchHHHhhhhcCCCCCcEEeccCcccccc-----ccccccccceEeccccccc-----eeccccCCCcceE
Q 015886          256 CLKFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTS-----VRISSPCLKTLILECCDKL-----IQVEIETPNLSIF  324 (398)
Q Consensus       256 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~-----~~~~~~~L~~L~l~~c~~~-----~~~~~~~p~L~~l  324 (398)
                      .|..+++ .+++..+..+..++++|+.|.+..|..+++     +..+++.|+.+++..|...     .++...+|.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            4444433 355566667777778888888888765443     3346777888887777765     2455777778877


Q ss_pred             EEeccce----------eeccccccccceeeeecc
Q 015886          325 KYHGDLI----------SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       325 ~~~~~~~----------~~~~~~~~L~~l~i~~~~  349 (398)
                      .++.+..          ........|+.+.+..+.
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            7764433          122234455555555443

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.90  E-value=1.2e-09  Score=69.64  Aligned_cols=35  Identities=34%  Similarity=0.746  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHhccCChhHHHHHhhcccchhhhh
Q 015886           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW   46 (398)
Q Consensus        12 i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw   46 (398)
                      |..||+||+.+||+||+.+|+++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.88  E-value=7e-10  Score=102.43  Aligned_cols=197  Identities=20%  Similarity=0.104  Sum_probs=115.3

Q ss_pred             CCeEEEEEecCCc-----cccCCccccCCCCeeEEEEeccccCCC--CccccC---cccceEEEEEEEeCHHHHHH---H
Q 015886          115 EVKELVLVHWRSE-----RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKL---FSLRKLALREVCADDQAIAS---L  181 (398)
Q Consensus       115 ~l~~L~l~~~~~~-----~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~---~~L~~L~L~~~~~~~~~l~~---l  181 (398)
                      +++++.++.....     ...++..+..+++|++|+++++.+...  .....+   ++|+.|+++++.+++.....   .
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            4666666552211     011223344467788888877766422  112222   44888888887775544433   2


Q ss_pred             HhcC-ccccEEEeeecCCcc----ee--ecCCCCCCceEEEecCCCc----ceeee---cccCceEEEEeeeeccc----
Q 015886          182 ISGC-PLIEYLEIRSCEGLE----SL--DLVNLSNLKEIILVNTSDI----KRVEI---KTSNVNALAIHQTYLFP----  243 (398)
Q Consensus       182 ~~~c-p~Le~L~l~~~~~~~----~~--~i~~~~~L~~L~l~~~~~l----~~~~~---~~p~L~~l~l~~~~~~~----  243 (398)
                      +..+ ++|++|++.+|....    .+  .+..+++|+.|++.+|.--    ..+..   ..++|++|+++++....    
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            3445 778888888775431    11  1223467888888777211    11211   33588888888776211    


Q ss_pred             -eeEeecCCCCCceEEeeccCCchHHHhhhhcC----CCCCcEEeccCcccc----ccc---cccccccceEeccccccc
Q 015886          244 -IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISK----LPLLEYLSMTKCHKL----TSV---RISSPCLKTLILECCDKL  311 (398)
Q Consensus       244 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~~----~~~---~~~~~~L~~L~l~~c~~~  311 (398)
                       ....+..+++|++|+++++.+.+..+..+...    .+.|++|++.+|...    ..+   ....+.|++++++++...
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence             11234677889999999888887555555444    378999999987421    111   113467888888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.73  E-value=8.1e-08  Score=96.70  Aligned_cols=71  Identities=15%  Similarity=0.070  Sum_probs=41.2

Q ss_pred             CCCcEEeccCccccccccccccccceEeccccccceeccccCCCcceEEEeccce----eeccccccccceeeeecc
Q 015886          277 PLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       277 ~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i~~~~  349 (398)
                      ++|+.|+++++ .++.++..+++|+.|+++++.. ..+.....+|+.|.+.+++.    ..+.++++|+.++++.+.
T Consensus       382 ~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~L-ssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        382 SGLKELIVSGN-RLTSLPVLPSELKELMVSGNRL-TSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             cccceEEecCC-cccCCCCcccCCCEEEccCCcC-CCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            35666666664 3444554555677777766653 23333333566666666555    334567778888886664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.54  E-value=2e-08  Score=88.93  Aligned_cols=239  Identities=21%  Similarity=0.236  Sum_probs=119.6

Q ss_pred             CCCceEEEEEeecCCCCCChhhHHHHHHHHHhC--CCeEEEEEe--cCCccccCCccccCCCCeeEEEEeccccCCCCcc
Q 015886           82 MISIKKFSLELDLINSPENASLAGRCLGLAIES--EVKELVLVH--WRSERRNLPEIIFYVESLHVLELSYCKLQQPSEN  157 (398)
Q Consensus        82 ~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~--~l~~L~l~~--~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~  157 (398)
                      ...+.+++++-.     +......+|+....+.  .+++.+++.  ......++|..+      +.|       .  ...
T Consensus        29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L------~~l-------~--~aL   88 (382)
T KOG1909|consen   29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL------KML-------S--KAL   88 (382)
T ss_pred             cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH------HHH-------H--HHH
Confidence            346666665543     4456667777766553  555555543  111122233221      000       0  344


Q ss_pred             ccCcccceEEEEEEEe---CHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEEEecCCCcceeeecccCce
Q 015886          158 VKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEIKTSNVN  232 (398)
Q Consensus       158 ~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~  232 (398)
                      ..+|.|++|+|+.|.+   ....+..++++|..|++|.+.+|..-..  -.+.  ..|..|...      ...-..|.|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~~~------kk~~~~~~Lr  160 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELAVN------KKAASKPKLR  160 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHHHH------hccCCCcceE
Confidence            5677888888888888   3456778899999999999998843210  0000  011111100      1111234455


Q ss_pred             EEEEeeeecc--c---eeEeecCCCCCceEEeeccCCchH---HHhhhhcCCCCCcEEeccCccc-------cccccccc
Q 015886          233 ALAIHQTYLF--P---IEVNVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKCHK-------LTSVRISS  297 (398)
Q Consensus       233 ~l~l~~~~~~--~---~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~-------~~~~~~~~  297 (398)
                      .+.+..+...  +   ....+...|.|+.+.++.+.+...   .+..-+.+||+|+.|+|....-       +......+
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW  240 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence            5554444311  0   011234445666666655554332   2233345566666666655310       11111134


Q ss_pred             cccceEeccccccc--------eeccccCCCcceEEEeccce---------eeccccccccceeeeec
Q 015886          298 PCLKTLILECCDKL--------IQVEIETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFS  348 (398)
Q Consensus       298 ~~L~~L~l~~c~~~--------~~~~~~~p~L~~l~~~~~~~---------~~~~~~~~L~~l~i~~~  348 (398)
                      |+|+.|++.+|-.-        ..+....|+|+.+.+.|+.+         .++..-+.|++|.++.+
T Consensus       241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            45666666666543        12234466666666666655         34444667777777555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.3e-08  Score=92.60  Aligned_cols=173  Identities=21%  Similarity=0.154  Sum_probs=105.6

Q ss_pred             CCCeEEEEEec-CCccccCCccccCCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcCcccc
Q 015886          114 SEVKELVLVHW-RSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (398)
Q Consensus       114 ~~l~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  189 (398)
                      ++++.|+++.. -.....+-..+..+++|+.|+++.+.+..+   ..-..++.||.|.|++|.++..++..++..||.|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            47777777652 112223333445578888888888877655   23346789999999999998888989899999999


Q ss_pred             EEEeeecCCcc--eeecCCCCCCceEEEecCCCc--c--eeeecccCceEEEEeeeeccce-------eEeecCCCCCce
Q 015886          190 YLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDI--K--RVEIKTSNVNALAIHQTYLFPI-------EVNVSSCGNLKC  256 (398)
Q Consensus       190 ~L~l~~~~~~~--~~~i~~~~~L~~L~l~~~~~l--~--~~~~~~p~L~~l~l~~~~~~~~-------~~~~~~~~~L~~  256 (398)
                      .|.+..+....  .....-+.+|+.|+++++..+  .  ......|.|+.|.++.+.....       .-....+|+|+.
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~  305 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY  305 (505)
T ss_pred             HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence            99998885332  112222467888888877221  1  1122566777776665541110       011245677777


Q ss_pred             EEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886          257 LKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (398)
Q Consensus       257 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (398)
                      |.+..+.+.+-....-+..+++|+.|.+..
T Consensus       306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  306 LNISENNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             eecccCccccccccchhhccchhhhhhccc
Confidence            777766653321222244456666666544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.54  E-value=1.7e-09  Score=102.39  Aligned_cols=98  Identities=14%  Similarity=0.062  Sum_probs=43.2

Q ss_pred             CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce--eccccCCCcceEE
Q 015886          251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLSIFK  325 (398)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~  325 (398)
                      +..|+.|++++.+-+-..+..-+..+.||..++++. .++..++.   ..++|+.|++++...-+  .....-.+|++|.
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN  274 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence            334444444444433333333333344555555544 23333333   34556666666544321  1111122455555


Q ss_pred             Eeccce----eeccccccccceeeeecc
Q 015886          326 YHGDLI----SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       326 ~~~~~~----~~~~~~~~L~~l~i~~~~  349 (398)
                      ++.++.    ..+-..+.|+++....+.
T Consensus       275 lSrNQLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  275 LSRNQLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             cccchhccchHHHhhhHHHHHHHhccCc
Confidence            555444    344445566666664443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.51  E-value=2e-08  Score=88.86  Aligned_cols=212  Identities=18%  Similarity=0.182  Sum_probs=126.3

Q ss_pred             CCCCeeEEEEeccccCCC------CccccCcccceEEEEEEEe---CHH------HHHHHHhcCccccEEEeeecCCc-c
Q 015886          137 YVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCA---DDQ------AIASLISGCPLIEYLEIRSCEGL-E  200 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~~---~~~------~l~~l~~~cp~Le~L~l~~~~~~-~  200 (398)
                      ...++++++|+|+.+...      ....+-++|+.-+++..--   -++      .+..-+..||.|+.|+|+++..- .
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            346677777777766443      2233344666666654422   111      23334567888888888877432 1


Q ss_pred             ee-----ecCCCCCCceEEEecCCCcceeeec--ccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCch---HHHh
Q 015886          201 SL-----DLVNLSNLKEIILVNTSDIKRVEIK--TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED---EWLC  270 (398)
Q Consensus       201 ~~-----~i~~~~~L~~L~l~~~~~l~~~~~~--~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~  270 (398)
                      .+     -++++..|++|.+.+| ++.+..-.  ..-|..+.        .....++-++|+.+..+.|...+   ..+.
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELA--------VNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHH--------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence            11     1334567777777777 22222110  00111111        11234677899999999888766   3455


Q ss_pred             hhhcCCCCCcEEeccCcc-ccccc---c---ccccccceEeccccccce-------eccccCCCcceEEEeccce-----
Q 015886          271 NGISKLPLLEYLSMTKCH-KLTSV---R---ISSPCLKTLILECCDKLI-------QVEIETPNLSIFKYHGDLI-----  331 (398)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~-~~~~~---~---~~~~~L~~L~l~~c~~~~-------~~~~~~p~L~~l~~~~~~~-----  331 (398)
                      ..++..|.|+.+.+.... ..+.+   .   ..+|+|+.|+|.....-.       ......|+|+.+.+.+|..     
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga  258 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA  258 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence            566778999999998841 11111   1   168999999999877641       2335566788888888766     


Q ss_pred             -----eeccccccccceeeeecccchhhHHH
Q 015886          332 -----SFSSNALSLSETSLCFSSHLMVNIEW  357 (398)
Q Consensus       332 -----~~~~~~~~L~~l~i~~~~~~~~~~~~  357 (398)
                           .+-..++.|+.+.+-.+.+...+...
T Consensus       259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~  289 (382)
T KOG1909|consen  259 IAFVDALKESAPSLEVLELAGNEITRDAALA  289 (382)
T ss_pred             HHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence                 44455889999999777655444333

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.45  E-value=5.6e-08  Score=62.24  Aligned_cols=37  Identities=41%  Similarity=0.762  Sum_probs=31.2

Q ss_pred             CCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhcc
Q 015886           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT   48 (398)
Q Consensus        12 i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~   48 (398)
                      ++.||+|++.+||++|+..|+++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.39  E-value=3.3e-07  Score=92.70  Aligned_cols=218  Identities=16%  Similarity=0.123  Sum_probs=99.3

Q ss_pred             CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEee
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~  194 (398)
                      +..+|.++..  ....+|..+  .++|+.|+++++.+...+. ..+++|+.|++++|.++.  +..-  -.+.|+.|+++
T Consensus       179 ~~~~L~L~~~--~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKIL--GLTTIPACI--PEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPAT--LPDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCC--CcCcCCccc--ccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChh--hhccccEEECc
Confidence            5666666542  233455433  2457777777776653321 123467777776665521  1110  11356666666


Q ss_pred             ecCCcceeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeeccceeEe-----------------e--cCCCCC
Q 015886          195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVN-----------------V--SSCGNL  254 (398)
Q Consensus       195 ~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~~~~-----------------~--~~~~~L  254 (398)
                      +|... .+...-.++|+.|+++++ .+..++. ..++|+.|+++++.-......                 +  ...++|
T Consensus       250 ~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL  327 (754)
T PRK15370        250 INRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGL  327 (754)
T ss_pred             CCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccc
Confidence            55321 111111134555555433 2222221 112445554444431100000                 0  112456


Q ss_pred             ceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-cccccceEeccccccceeccccC-CCcceEEEeccce-
Q 015886          255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDLI-  331 (398)
Q Consensus       255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~~~~~~~~~-p~L~~l~~~~~~~-  331 (398)
                      +.|+++++.+..  +...  -.++|+.|++++| .++.++. .++.|++|+|++|... .+.... ++|+.|.+.+++. 
T Consensus       328 ~~L~Ls~N~Lt~--LP~~--l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~  401 (754)
T PRK15370        328 KTLEAGENALTS--LPAS--LPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNALT-NLPENLPAALQIMQASRNNLV  401 (754)
T ss_pred             eeccccCCcccc--CChh--hcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcc
Confidence            666666655432  1111  1257777777775 3333433 2356777777776532 222111 2466666665554 


Q ss_pred             -------eeccccccccceeeeecc
Q 015886          332 -------SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       332 -------~~~~~~~~L~~l~i~~~~  349 (398)
                             .+....+.+..+.+..+.
T Consensus       402 ~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        402 RLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             cCchhHHHHhhcCCCccEEEeeCCC
Confidence                   122334566667665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.37  E-value=3.4e-09  Score=100.37  Aligned_cols=59  Identities=22%  Similarity=0.233  Sum_probs=33.8

Q ss_pred             CCCeEEEEEecCCccccCCcccc-CCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeC
Q 015886          114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCAD  174 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~  174 (398)
                      ++.-.|.++..  ....+|..++ ++..|-.|+|+++++... +-...+..|++|.|+++...
T Consensus       126 Kn~iVLNLS~N--~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  126 KNSIVLNLSYN--NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cCcEEEEcccC--ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence            46666666553  3345555444 346666677777766433 44455666666666666543

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.36  E-value=3.1e-07  Score=56.51  Aligned_cols=34  Identities=38%  Similarity=0.692  Sum_probs=31.5

Q ss_pred             CCHHHHHHHhccCChhHHHHHhhcccchhhhhcc
Q 015886           15 LPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT   48 (398)
Q Consensus        15 LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~   48 (398)
                      ||+|++.+||++++.+|+.+++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.31  E-value=1e-07  Score=93.17  Aligned_cols=212  Identities=22%  Similarity=0.228  Sum_probs=123.0

Q ss_pred             hCCCeEEEEEecC-CccccCCccccCCCCeeEEEEecc-ccCCC------CccccCcccceEEEEEEE-eCHHHHHHHHh
Q 015886          113 ESEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVC-ADDQAIASLIS  183 (398)
Q Consensus       113 ~~~l~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~L~~~-~l~~~------~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~  183 (398)
                      .++++++.+..+. .....+-.....++.|+.|+++++ .....      .....+++|+.|++.++. ++|..+..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            3577777777632 222224455667889999999873 11111      344567889999999888 58888888888


Q ss_pred             cCccccEEEeeecCCcceee----cCCCCCCceEEEecCCCc-----ceeeecccCceEEEEeeeec-------------
Q 015886          184 GCPLIEYLEIRSCEGLESLD----LVNLSNLKEIILVNTSDI-----KRVEIKTSNVNALAIHQTYL-------------  241 (398)
Q Consensus       184 ~cp~Le~L~l~~~~~~~~~~----i~~~~~L~~L~l~~~~~l-----~~~~~~~p~L~~l~l~~~~~-------------  241 (398)
                      .||+||.|.+.+|..+....    ...+++|++|++.+|..+     ..+...+|+|+.+.+.+...             
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            89999999988887653322    223688999999988443     23333677766666543321             


Q ss_pred             -----cceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccccccccceEecccccccee--c
Q 015886          242 -----FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQ--V  314 (398)
Q Consensus       242 -----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~--~  314 (398)
                           .........+++++++.+.++...+......+.+||+|. ..+..+..      ....++.|++..|.....  +
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~------~~~~l~~L~l~~~~~~t~~~l  419 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC------RSDSLRVLNLSDCRLVTDKGL  419 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc------cCCccceEecccCccccccch
Confidence                 011122345666666666655544444445555566552 22221100      111267777777776521  1


Q ss_pred             c---ccCCCcceEEEeccce
Q 015886          315 E---IETPNLSIFKYHGDLI  331 (398)
Q Consensus       315 ~---~~~p~L~~l~~~~~~~  331 (398)
                      .   ..+.+++.+++.++..
T Consensus       420 ~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  420 RCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             HHHhhhhhccccCCccCccc
Confidence            1   1144555555555433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.24  E-value=2.9e-06  Score=85.70  Aligned_cols=212  Identities=15%  Similarity=0.054  Sum_probs=142.4

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      .+-..|+++..  ....+|..+.  ++|+.|.+.++.+...+  ...++|++|+|++|.++.  +.   ...++|++|++
T Consensus       201 ~~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LP---VLPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--cc---Ccccccceeec
Confidence            45666766653  3346777654  47999999998876432  346899999999987742  11   13478999999


Q ss_pred             eecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhh
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI  273 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  273 (398)
                      .+|.. ..+.- ..++|+.|.+.++ .+..++...|+|+.|+++++......   ...++|+.|++.++.+..  +.   
T Consensus       270 s~N~L-~~Lp~-lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp---~lp~~L~~L~Ls~N~L~~--LP---  338 (788)
T PRK15387        270 FSNPL-THLPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTS--LP---  338 (788)
T ss_pred             cCCch-hhhhh-chhhcCEEECcCC-ccccccccccccceeECCCCccccCC---CCcccccccccccCcccc--cc---
Confidence            88743 22221 1267999999887 45555556689999999987622211   123468889998877653  11   


Q ss_pred             cCCCCCcEEeccCccccccccccccccceEeccccccceeccccCCCcceEEEeccce-eeccccccccceeeeecc
Q 015886          274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       274 ~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~~~-~~~~~~~~L~~l~i~~~~  349 (398)
                      ...++|+.|+++++ .++.++..+++|+.|+++++.. ..+....++|+.|.+.++.. .+-...++|+.++++.+.
T Consensus       339 ~lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L-~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~  413 (788)
T PRK15387        339 TLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRL-TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR  413 (788)
T ss_pred             ccccccceEecCCC-ccCCCCCCCcccceehhhcccc-ccCcccccccceEEecCCcccCCCCcccCCCEEEccCCc
Confidence            12258999999985 5666776677899998887653 34444445789999988776 222234578888886664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.23  E-value=4.1e-07  Score=75.11  Aligned_cols=59  Identities=22%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             ccCceEEEEeeeecc--ceeEeecCCCCCceEEeeccCCchH--HHhhhhcCCCCCcEEeccC
Q 015886          228 TSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYLSMTK  286 (398)
Q Consensus       228 ~p~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~  286 (398)
                      +|+|++|+++++...  .....+..+|+|+.|++.++.+...  --..++..+|+|+.|+-..
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            455555555544411  1112345566666666666555431  1123344566666666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.11  E-value=2.8e-07  Score=91.38  Aligned_cols=123  Identities=17%  Similarity=0.285  Sum_probs=54.0

Q ss_pred             ccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecC--CcceeecCCCCCCceEEEecCCCcceee---ecccCceEEEE
Q 015886          162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE--GLESLDLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAI  236 (398)
Q Consensus       162 ~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~--~~~~~~i~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l  236 (398)
                      .|+.|.+.++.++|..+.- +.++++|+.|+++++.  .+....+..++.|+.|.++++ .++.++   ..++.|+.|..
T Consensus       360 ~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh
Confidence            3333444444443333322 3344444444444441  112222233344444444443 222222   13344444444


Q ss_pred             eeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886          237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (398)
Q Consensus       237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (398)
                      .++....++ .+..++.|+.++++.+++....+.+.... |+||+|++++..
T Consensus       438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            443321111 44556666666666666655444443333 666666666643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.10  E-value=1.1e-05  Score=81.93  Aligned_cols=178  Identities=17%  Similarity=0.096  Sum_probs=99.9

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~  218 (398)
                      .+...|++.+..+...+.. -.++|+.|+|++|.+..  +..  ..+++|+.|++.+|. +..+...-.++|+.|.+++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~--~l~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPE--NLQGNIKTLYANSNQ-LTSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CCh--hhccCCCEEECCCCc-cccCChhhhccccEEECcCC
Confidence            4568899988766543221 13579999999998742  211  123689999999874 33333222368999999998


Q ss_pred             CCcceeee-cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-c
Q 015886          219 SDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-S  296 (398)
Q Consensus       219 ~~l~~~~~-~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~  296 (398)
                       .+..++. ...+|+.|+++++........+  .++|+.|+++++.+..-  ...+  .++|+.|+++++ .++.++. .
T Consensus       252 -~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~L--P~~l--p~sL~~L~Ls~N-~Lt~LP~~l  323 (754)
T PRK15370        252 -RITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTL--PAHL--PSGITHLNVQSN-SLTALPETL  323 (754)
T ss_pred             -ccCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCccccC--cccc--hhhHHHHHhcCC-ccccCCccc
Confidence             3444443 2347999999877632221112  35899999998876531  1100  134555555553 2223322 2


Q ss_pred             ccccceEeccccccceeccc-cCCCcceEEEeccce
Q 015886          297 SPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI  331 (398)
Q Consensus       297 ~~~L~~L~l~~c~~~~~~~~-~~p~L~~l~~~~~~~  331 (398)
                      +++|+.|++.+|..- .+.. ..++|+.|.++++..
T Consensus       324 ~~sL~~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~L  358 (754)
T PRK15370        324 PPGLKTLEAGENALT-SLPASLPPELQVLDVSKNQI  358 (754)
T ss_pred             cccceeccccCCccc-cCChhhcCcccEEECCCCCC
Confidence            345555555555421 1111 123455555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.07  E-value=1.3e-06  Score=87.72  Aligned_cols=148  Identities=18%  Similarity=0.158  Sum_probs=98.9

Q ss_pred             CCeeEEEEeccccCCC----CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEE
Q 015886          139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~  214 (398)
                      .+|++|+++|...-..    ....-||+|++|.+.+..+..+.+..+..++|+|..|+++++.-..-..++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            6788888877433222    345678999999999999966668888899999999999986543334566677777776


Q ss_pred             EecCCCcc--ee-e-ecccCceEEEEeeeeccceeE-------eecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEe
Q 015886          215 LVNTSDIK--RV-E-IKTSNVNALAIHQTYLFPIEV-------NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (398)
Q Consensus       215 l~~~~~l~--~~-~-~~~p~L~~l~l~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  283 (398)
                      +.+-+.-.  .+ . .+..+|+.|+++.........       .-..+|+|+.|+.++..++.+.+..++..-|+|+...
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            65441111  11 1 156678888887665221110       1134788888888888888777777777777777766


Q ss_pred             ccC
Q 015886          284 MTK  286 (398)
Q Consensus       284 l~~  286 (398)
                      .-+
T Consensus       282 ~~~  284 (699)
T KOG3665|consen  282 ALD  284 (699)
T ss_pred             hhh
Confidence            554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.98  E-value=2.2e-07  Score=92.03  Aligned_cols=45  Identities=31%  Similarity=0.215  Sum_probs=25.5

Q ss_pred             ccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe
Q 015886          129 RNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA  173 (398)
Q Consensus       129 ~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~  173 (398)
                      ..+|..++...+|+.|.+..|.+... +....+.+|++|+|..+.+
T Consensus       277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  277 VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence            34444444445555555555544433 3344477888888887776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=2.3e-06  Score=74.54  Aligned_cols=175  Identities=18%  Similarity=0.156  Sum_probs=126.9

Q ss_pred             CCCeEEEEEec-CCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHW-RSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      .+++++++... -....++...+...+.|+.|+|+.+.+.++  .......+|+.|.|.+...+-...+..+...|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            48899988763 234445666667789999999999988766  223566799999999988888888888999999999


Q ss_pred             EEeeecCCc------ceeecCCCCCCceEEEecC-----CCcceeeecccCceEEEEeeee--ccceeEeecCCCCCceE
Q 015886          191 LEIRSCEGL------ESLDLVNLSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCL  257 (398)
Q Consensus       191 L~l~~~~~~------~~~~i~~~~~L~~L~l~~~-----~~l~~~~~~~p~L~~l~l~~~~--~~~~~~~~~~~~~L~~L  257 (398)
                      |.++.+..-      .+..-. .+.++.|....|     .+...+.--.||+.++.+..++  .......+..+|.+..|
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhccchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            998876321      111111 267888888888     2333444467899999888776  22233456778888899


Q ss_pred             EeeccCCch-HHHhhhhcCCCCCcEEeccCcccc
Q 015886          258 KFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKL  290 (398)
Q Consensus       258 ~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~~  290 (398)
                      .+..+.+++ +++.. +.+||.|..|.+...+..
T Consensus       230 nL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  230 NLGANNIDSWASVDA-LNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhcccccccHHHHHH-HcCCchhheeeccCCccc
Confidence            999888765 55555 778999999999985443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.94  E-value=3.1e-06  Score=69.95  Aligned_cols=36  Identities=31%  Similarity=0.225  Sum_probs=10.3

Q ss_pred             CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886          251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (398)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (398)
                      +|+|++|+++++.+.+-.-...++.+|+|+.|++.+
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence            455555555544443311112233445555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.92  E-value=8.1e-07  Score=86.88  Aligned_cols=130  Identities=19%  Similarity=0.221  Sum_probs=84.2

Q ss_pred             ccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeec-CCcce------eecCCCCCCceEEEecCCCcceee----
Q 015886          158 VKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSC-EGLES------LDLVNLSNLKEIILVNTSDIKRVE----  225 (398)
Q Consensus       158 ~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~-~~~~~------~~i~~~~~L~~L~l~~~~~l~~~~----  225 (398)
                      ..+++|+.|.+.++.. ++..+..+...||.|++|.+.+| .....      .....+++|+.|++..|..+....    
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3478888888888765 66667777888888888888773 22211      112235788888888874333333    


Q ss_pred             -ecccCceEEEEeeeec---cceeEeecCCCCCceEEeeccCC-chHHHhhhhcCCCCCcEEeccCc
Q 015886          226 -IKTSNVNALAIHQTYL---FPIEVNVSSCGNLKCLKFDFLPI-EDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       226 -~~~p~L~~l~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                       ..||+|+.|.+.++..   .........+++|++|+++++.. ++..+..+..+|++|+.|.+..+
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence             2478888888666652   11222345678888888886653 45666666777888777665553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.83  E-value=4.1e-06  Score=75.74  Aligned_cols=89  Identities=20%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             hhhcCCCCCcEEeccCccccccccc----cccccceEeccccccc---eeccccCCCcceEEEeccce-----eeccccc
Q 015886          271 NGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKL---IQVEIETPNLSIFKYHGDLI-----SFSSNAL  338 (398)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~---~~~~~~~p~L~~l~~~~~~~-----~~~~~~~  338 (398)
                      .-+..+|+|++|++++. .++.+..    ....++.|.+.....-   ..+.....+|+.|.+.|.++     ..++.+.
T Consensus       268 ~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             HHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            33677899999999884 3343333    4567788877765542   34556777899999999988     7888899


Q ss_pred             cccceeeeecc-cchhhHHHHHH
Q 015886          339 SLSETSLCFSS-HLMVNIEWVVE  360 (398)
Q Consensus       339 ~L~~l~i~~~~-~~~~~~~~~~~  360 (398)
                      +|.++.+-.+. .-.....|+.+
T Consensus       347 ~l~~l~l~~Np~~CnC~l~wl~~  369 (498)
T KOG4237|consen  347 SLSTLNLLSNPFNCNCRLAWLGE  369 (498)
T ss_pred             eeeeeehccCcccCccchHHHHH
Confidence            99999994443 11224455544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.79  E-value=4.6e-06  Score=83.74  Aligned_cols=140  Identities=19%  Similarity=0.227  Sum_probs=78.2

Q ss_pred             ccccEEEeeecCCcc-ee--ecC-CCCCCceEEEecC----CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceE
Q 015886          186 PLIEYLEIRSCEGLE-SL--DLV-NLSNLKEIILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL  257 (398)
Q Consensus       186 p~Le~L~l~~~~~~~-~~--~i~-~~~~L~~L~l~~~----~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L  257 (398)
                      .+|+.|++++...+. .+  .++ -+|+|++|.+.+-    ..+..+..+.|||.+|+++|+..... ..++.+.+|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            467777777644331 11  122 2678888877764    22333344677888888877773332 455677777777


Q ss_pred             EeeccCCch-HHHhhhhcCCCCCcEEeccCcccccc---------ccccccccceEeccccccc----eeccccCCCcce
Q 015886          258 KFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTS---------VRISSPCLKTLILECCDKL----IQVEIETPNLSI  323 (398)
Q Consensus       258 ~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~~~~---------~~~~~~~L~~L~l~~c~~~----~~~~~~~p~L~~  323 (398)
                      .+.+-.+.. ..+.. +-.+.+|+.|+++.-.....         -+..+|.|+.|+.++-..-    +.+...-|+|+.
T Consensus       201 ~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  201 SMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             hccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            777666654 33344 33577788888877321111         1114566777766654432    233345555555


Q ss_pred             EEEe
Q 015886          324 FKYH  327 (398)
Q Consensus       324 l~~~  327 (398)
                      +...
T Consensus       280 i~~~  283 (699)
T KOG3665|consen  280 IAAL  283 (699)
T ss_pred             hhhh
Confidence            4433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.59  E-value=8.6e-07  Score=71.00  Aligned_cols=57  Identities=19%  Similarity=0.166  Sum_probs=34.9

Q ss_pred             ccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886          228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (398)
Q Consensus       228 ~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (398)
                      +..|+-|+++++...-....++.+.+|+.|.+..+.+..  +.+-+..+..|+.|++.+
T Consensus       126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence            345666666666644444567778888888887665422  222244456777777777

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.53  E-value=3.9e-05  Score=67.12  Aligned_cols=204  Identities=14%  Similarity=0.081  Sum_probs=89.3

Q ss_pred             CCCeeEEEEeccccCCC----------CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCC
Q 015886          138 VESLHVLELSYCKLQQP----------SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNL  207 (398)
Q Consensus       138 ~~~L~~L~L~~~~l~~~----------~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~  207 (398)
                      |..|+.|..++..-+..          .....|.+|+.+.++.|.  .+.+..+...-|.|+.+.+++......-.+.  
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~--  256 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPSLL--  256 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeeccccccccccc--
Confidence            56677777776421111          122345677777777663  3344444455577777776653211000000  


Q ss_pred             CCCceEEEecC-----CCcceeee-cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcE
Q 015886          208 SNLKEIILVNT-----SDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (398)
Q Consensus       208 ~~L~~L~l~~~-----~~l~~~~~-~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  281 (398)
                      |.=+.-+.++-     .+.....+ .-..|+.++++++....+--++.-.|.++.|+++.+.+...  .. ++.+++|+.
T Consensus       257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~n-La~L~~L~~  333 (490)
T KOG1259|consen  257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QN-LAELPQLQL  333 (490)
T ss_pred             chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hh-hhhcccceE
Confidence            00000000000     00000000 11235555555554322222334455666666665554331  11 334566666


Q ss_pred             EeccCcc--ccccccccccccceEeccccccce-eccccCCCcceEEEeccce------eeccccccccceeeeec
Q 015886          282 LSMTKCH--KLTSVRISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFS  348 (398)
Q Consensus       282 L~l~~c~--~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~l~i~~~  348 (398)
                      |++++..  .+........+.+.|.+.+...-. +-...+-+|.+|+++++++      ..+.+.+.|+.+.+..+
T Consensus       334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             eecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence            6666631  122222244555555554432110 1112223455555555555      45556666776666544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.45  E-value=2.5e-05  Score=76.11  Aligned_cols=201  Identities=17%  Similarity=0.133  Sum_probs=119.5

Q ss_pred             ccCCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCcc-
Q 015886           79 QRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSEN-  157 (398)
Q Consensus        79 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~-  157 (398)
                      ...+.+++.|+...+...-......+...+..  -+..+.+.+.........-|-.++...+|++|.+.+|.+...... 
T Consensus        51 g~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~--lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~  128 (1096)
T KOG1859|consen   51 GLSGAPVDYFRAYVSDNADSRVLEQLQRILDF--LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQ  128 (1096)
T ss_pred             ccCCCCCceeEEecCCcccchHHHHHHHHHHH--HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhH
Confidence            34566777776654432100111122222222  235566665553222222277889999999999999865432111 


Q ss_pred             --------------------------------ccCcccceEEEEEEEe--CHHHHHHHHhcCccccEEEeeecCCcceee
Q 015886          158 --------------------------------VKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESLD  203 (398)
Q Consensus       158 --------------------------------~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~  203 (398)
                                                      .....|...+.++|..  -|+.++    -.|.||.|+|+++...+.-.
T Consensus       129 ~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk~~~v~~  204 (1096)
T KOG1859|consen  129 ELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNKFTKVDN  204 (1096)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhhhhhhHH
Confidence                                            1112344444444443  233332    34889999999886655445


Q ss_pred             cCCCCCCceEEEecC--CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcE
Q 015886          204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (398)
Q Consensus       204 i~~~~~L~~L~l~~~--~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  281 (398)
                      +..|+.|++|+++++  ..+..+....-.|.-|.+.++.-.. ...+.++.+|..|++++|-+.+..-...+..+..|+.
T Consensus       205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~  283 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV  283 (1096)
T ss_pred             HHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence            666899999999876  2222333323348888888877222 3356788899999999887766444444555677888


Q ss_pred             EeccC
Q 015886          282 LSMTK  286 (398)
Q Consensus       282 L~l~~  286 (398)
                      |.|.+
T Consensus       284 L~LeG  288 (1096)
T KOG1859|consen  284 LWLEG  288 (1096)
T ss_pred             HhhcC
Confidence            88888

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.39  E-value=0.0011  Score=68.82  Aligned_cols=124  Identities=17%  Similarity=0.165  Sum_probs=71.3

Q ss_pred             CCCeeEEEEeccccCCCCccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886          138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (398)
Q Consensus       138 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~  214 (398)
                      ....+.+.+.++.+........+|.|++|-+..+.. -...-..++...|.|+.|++++|.....+  .|+.+-+||.|+
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            356677777776665555666777888888887752 11111233556788999999887776554  355566777777


Q ss_pred             EecCCCcceeeecc---cCceEEEEeeeeccceeE-eecCCCCCceEEeecc
Q 015886          215 LVNTSDIKRVEIKT---SNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL  262 (398)
Q Consensus       215 l~~~~~l~~~~~~~---p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  262 (398)
                      +.++ .+..++...   ..|.+|++.......... ....+++|++|.+...
T Consensus       602 L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  602 LSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            7766 343444322   334455544433111111 1233666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.38  E-value=0.00026  Score=62.17  Aligned_cols=170  Identities=18%  Similarity=0.197  Sum_probs=106.9

Q ss_pred             HHHHHHhcCccccEEEeeecCCc----------ceeecCCCCCCceEEEecC--CCcceeeecccCceEEEEeeee----
Q 015886          177 AIASLISGCPLIEYLEIRSCEGL----------ESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTY----  240 (398)
Q Consensus       177 ~l~~l~~~cp~Le~L~l~~~~~~----------~~~~i~~~~~L~~L~l~~~--~~l~~~~~~~p~L~~l~l~~~~----  240 (398)
                      ++.+++.-|.+|..|.+....+.          -.+.+..+.+|+.+.++.|  .++..+...-|.|.++......    
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~  252 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV  252 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccc
Confidence            45666777777777777654322          1123334677777777777  4555555566777776654433    


Q ss_pred             --------------------ccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc--cccc
Q 015886          241 --------------------LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSP  298 (398)
Q Consensus       241 --------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~  298 (398)
                                          .++....+.....|++++++++.+..  +.+-.+-.|.++.|+++... +..+.  ...+
T Consensus       253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~  329 (490)
T KOG1259|consen  253 PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNR-IRTVQNLAELP  329 (490)
T ss_pred             ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccc-eeeehhhhhcc
Confidence                                11223345567789999999888754  23334567999999999953 22222  2578


Q ss_pred             ccceEeccccccc--eeccccCCCcceEEEeccce---eeccccccccceeeeecc
Q 015886          299 CLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       299 ~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~l~i~~~~  349 (398)
                      +|..|++++....  ..+...+-|.++|.+.++.+   .-+...-+|..+++..+.
T Consensus       330 ~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccc
Confidence            9999999987654  34455666778887777655   223345556666665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.35  E-value=0.00098  Score=62.27  Aligned_cols=135  Identities=16%  Similarity=0.222  Sum_probs=65.5

Q ss_pred             CcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeee
Q 015886          160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQT  239 (398)
Q Consensus       160 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~  239 (398)
                      +++++.|++++|.+..  +.   .--++|++|.+.+|..+..+.-.-.++|++|.+.+|..+..++   ++|+.|++.+.
T Consensus        51 ~~~l~~L~Is~c~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~~n  122 (426)
T PRK15386         51 ARASGRLYIKDCDIES--LP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIKGS  122 (426)
T ss_pred             hcCCCEEEeCCCCCcc--cC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeCCC
Confidence            5666666666663311  11   1112466666666655543321112466666666664444332   34666665433


Q ss_pred             eccceeEeecCCC-CCceEEeeccCCchHHHhhhhcCC-CCCcEEeccCccccccccccccccceEecccc
Q 015886          240 YLFPIEVNVSSCG-NLKCLKFDFLPIEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRISSPCLKTLILECC  308 (398)
Q Consensus       240 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c  308 (398)
                      ..    ..+..+| +|+.|.+.+......  ......+ ++|+.|.+++|.....-..-+++|++|.++.+
T Consensus       123 ~~----~~L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        123 AT----DSIKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CC----cccccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            21    1234443 566666643221100  0000112 57888888887654322223457788877654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.28  E-value=5.4e-05  Score=78.22  Aligned_cols=196  Identities=22%  Similarity=0.220  Sum_probs=100.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      +.++.|+++. +.....+|..+..+-+|++|+++++.+..- .....+..|.+|++..+..-. .+..+....++|+.|.
T Consensus       571 ~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  571 PLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLR  648 (889)
T ss_pred             cceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEEE
Confidence            3555555554 334455666666666666666666655322 445555566666665543311 1123334456666666


Q ss_pred             eeecC-Ccceee---cCCCCCCceEEEecCCC--cceeeecccCce----EEEEeeeeccceeEeecCCCCCceEEeecc
Q 015886          193 IRSCE-GLESLD---LVNLSNLKEIILVNTSD--IKRVEIKTSNVN----ALAIHQTYLFPIEVNVSSCGNLKCLKFDFL  262 (398)
Q Consensus       193 l~~~~-~~~~~~---i~~~~~L~~L~l~~~~~--l~~~~~~~p~L~----~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~  262 (398)
                      +.... ......   +..+.+|+.+.+..+..  +..+ ...+.|.    .+.+.++........+..+.+|+.|.+.++
T Consensus       649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~  727 (889)
T KOG4658|consen  649 LPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDC  727 (889)
T ss_pred             eeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcC
Confidence            65432 111111   12234444444433321  0111 1222332    222222222233445677889999999877


Q ss_pred             CCchHHHhh-----hhcCCCCCcEEeccCccccccccc--cccccceEeccccccce
Q 015886          263 PIEDEWLCN-----GISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI  312 (398)
Q Consensus       263 ~~~~~~~~~-----~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~  312 (398)
                      .+.+.....     ....|+++..+.+.+|........  -+|+|+.|++..|...+
T Consensus       728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e  784 (889)
T KOG4658|consen  728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE  784 (889)
T ss_pred             CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence            765421110     011356777777777766655553  56788888888888763

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.21  E-value=0.00032  Score=65.46  Aligned_cols=157  Identities=13%  Similarity=0.096  Sum_probs=94.7

Q ss_pred             CCCCeeEEEEeccccCCCCccccCc-ccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886          137 YVESLHVLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~~~~~~~~-~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l  215 (398)
                      .|.++++|++++|.+...+   .+| +|+.|.+++|..- ..+...+  .+.|+.|.+.+|..+..+    .++|+.|.+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL----P~sLe~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL----PESVRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc----ccccceEEe
Confidence            4688999999999766433   344 6999999876431 1111111  368999999998765432    267999988


Q ss_pred             ecCCCcceeeecccCceEEEEeeeeccceeEee-cCC-CCCceEEeeccCCchHHHhhhhcCC-CCCcEEeccCcc--cc
Q 015886          216 VNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNV-SSC-GNLKCLKFDFLPIEDEWLCNGISKL-PLLEYLSMTKCH--KL  290 (398)
Q Consensus       216 ~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~--~~  290 (398)
                      ... ....+..-.++|+.|.+.+..... ...+ ..+ ++|+.|.+.++....     +...+ .+|+.|+++.+.  .+
T Consensus       120 ~~n-~~~~L~~LPssLk~L~I~~~n~~~-~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n~~~sL  192 (426)
T PRK15386        120 KGS-ATDSIKNVPNGLTSLSINSYNPEN-QARIDNLISPSLKTLSLTGCSNII-----LPEKLPESLQSITLHIEQKTTW  192 (426)
T ss_pred             CCC-CCcccccCcchHhheecccccccc-ccccccccCCcccEEEecCCCccc-----CcccccccCcEEEecccccccc
Confidence            643 333333334578888885433110 0111 123 589999998776432     11112 589999997742  21


Q ss_pred             cccc-ccccccceEeccccccc
Q 015886          291 TSVR-ISSPCLKTLILECCDKL  311 (398)
Q Consensus       291 ~~~~-~~~~~L~~L~l~~c~~~  311 (398)
                      +-.. .-++++ .|.+.+|..+
T Consensus       193 eI~~~sLP~nl-~L~f~n~lkL  213 (426)
T PRK15386        193 NISFEGFPDGL-DIDLQNSVLL  213 (426)
T ss_pred             cCccccccccc-Eechhhhccc
Confidence            1111 123566 8888888664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.00038  Score=61.06  Aligned_cols=148  Identities=13%  Similarity=0.087  Sum_probs=91.0

Q ss_pred             CeeEEEEeccccCCC----CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceeecC--CCCCCce
Q 015886          140 SLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLV--NLSNLKE  212 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~--~~~~L~~  212 (398)
                      -++-|.+.+|.+...    .....+..++.|+|.++.+ +-..+..++...|.|+.|+++.+.-...+.--  ...+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            455677777777655    2334567899999999999 66778888999999999999987554333211  2468999


Q ss_pred             EEEecC----CCcceeeecccCceEEEEeeeeccceeE---eecC-CCCCceEEeeccCCc-hHHHhhhhcCCCCCcEEe
Q 015886          213 IILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEV---NVSS-CGNLKCLKFDFLPIE-DEWLCNGISKLPLLEYLS  283 (398)
Q Consensus       213 L~l~~~----~~l~~~~~~~p~L~~l~l~~~~~~~~~~---~~~~-~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~  283 (398)
                      |.+.+.    ...+...-..|.++.|.++.+.......   .... -+.+++|++..|... +.....+...|||+..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            988876    2222233355666677666553111000   0111 124555555544432 344455566678888777


Q ss_pred             ccCc
Q 015886          284 MTKC  287 (398)
Q Consensus       284 l~~c  287 (398)
                      +..|
T Consensus       206 v~e~  209 (418)
T KOG2982|consen  206 VCEG  209 (418)
T ss_pred             eecC
Confidence            7665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.13  E-value=0.00022  Score=61.75  Aligned_cols=103  Identities=19%  Similarity=0.055  Sum_probs=64.4

Q ss_pred             cccCceEEEEeeee--ccce---eEeecCCCCCceEEeeccCCchHHHhhh----hcCCCCCcEEeccCcc-------cc
Q 015886          227 KTSNVNALAIHQTY--LFPI---EVNVSSCGNLKCLKFDFLPIEDEWLCNG----ISKLPLLEYLSMTKCH-------KL  290 (398)
Q Consensus       227 ~~p~L~~l~l~~~~--~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~c~-------~~  290 (398)
                      +.|.|+++.+..+.  ..+.   ...+.+-.+|+.+.+..+.|..+++..+    +.++.+|+.|+|....       .+
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            46788888877665  1111   1123344689999999888766533322    4578999999998841       11


Q ss_pred             ccccccccccceEeccccccce----ec-----cccCCCcceEEEecc
Q 015886          291 TSVRISSPCLKTLILECCDKLI----QV-----EIETPNLSIFKYHGD  329 (398)
Q Consensus       291 ~~~~~~~~~L~~L~l~~c~~~~----~~-----~~~~p~L~~l~~~~~  329 (398)
                      .......+.|+.|.+..|-...    ++     ....|+|..|+..-.
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence            1112245678999999998752    11     256788887766543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.08  E-value=1.2e-05  Score=64.49  Aligned_cols=133  Identities=18%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             ccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee---c
Q 015886          129 RNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---L  204 (398)
Q Consensus       129 ~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---i  204 (398)
                      ..+|+.+....+|+.|++.++.+... ....++|.|+.|++.-++..  .+.+=+.++|.||.|++.++.-.+..-   +
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpgnf  123 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNF  123 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCcch
Confidence            34444444555555555555544322 33444555555555433320  011113344555555555442221110   0


Q ss_pred             CCCCCCceEEEecCCCcceeee---cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886          205 VNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       205 ~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      ..+.+|+-|.+.++ .++.++-   ...+|+.|.+..+.-......++.+..|++|++.++.+
T Consensus       124 f~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  124 FYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            01234444444443 2222221   33445555555544333344567777888888887764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.00015  Score=62.34  Aligned_cols=104  Identities=26%  Similarity=0.258  Sum_probs=71.2

Q ss_pred             CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEe
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l  193 (398)
                      .++++.++.+......+....-....|+.|++.++.+.....+..+|+||+|.++.+.+ ....+.-++..||+|++|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l   98 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL   98 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence            34555555544444444444444577888888888887767777889999999998855 33456666778899999999


Q ss_pred             eecCCc--cee-ecCCCCCCceEEEecC
Q 015886          194 RSCEGL--ESL-DLVNLSNLKEIILVNT  218 (398)
Q Consensus       194 ~~~~~~--~~~-~i~~~~~L~~L~l~~~  218 (398)
                      +++..-  +.+ .+..+++|++|.+.+|
T Consensus        99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   99 SGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             cCCccccccccchhhhhcchhhhhcccC
Confidence            987542  222 1233577888888888

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.81  E-value=0.00027  Score=47.55  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=24.4

Q ss_pred             CeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeec
Q 015886          140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC  196 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~  196 (398)
                      +|++|++.+|.+...  ..+..+++|++|+++++.+..-. ...+.++|+|+.|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence            455555555544322  23344555555555544441100 011344555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.72  E-value=0.00055  Score=45.98  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=16.7

Q ss_pred             cCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      ..+++|++|+++++.+..- ....+..+++|+.|+++++
T Consensus        22 ~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   22 SNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             cCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            4445555555554444321 1122344455555555443

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.70  E-value=0.0011  Score=63.23  Aligned_cols=165  Identities=21%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             CCCeeEEEEeccccCCCCccc-cC-cccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecC-CCCCCceEE
Q 015886          138 VESLHVLELSYCKLQQPSENV-KL-FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKEII  214 (398)
Q Consensus       138 ~~~L~~L~L~~~~l~~~~~~~-~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~-~~~~L~~L~  214 (398)
                      .+.++.|.+.++.+..-+... .. ++|+.|+++++.+.+..  .-+..+|.|+.|++.++....-.... ..+.|+.|.
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            356777887777665443333 33 27888888777653321  22456788888888877554332222 347777777


Q ss_pred             EecCCCcceeee--cccC-ceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccc
Q 015886          215 LVNTSDIKRVEI--KTSN-VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (398)
Q Consensus       215 l~~~~~l~~~~~--~~p~-L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  291 (398)
                      ++++ .+..++.  ..++ |+++.+++.........+..+.++..+.+..+.+...  ......+++++.|+++++ .+.
T Consensus       193 ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n-~i~  268 (394)
T COG4886         193 LSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNN-QIS  268 (394)
T ss_pred             ccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceeccccc-ccc
Confidence            7776 4444443  2344 7777777663222223345555666666555544331  233455666777777774 222


Q ss_pred             cccc--cccccceEecccc
Q 015886          292 SVRI--SSPCLKTLILECC  308 (398)
Q Consensus       292 ~~~~--~~~~L~~L~l~~c  308 (398)
                      .+..  ....|+.|++++-
T Consensus       269 ~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         269 SISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccccccCccCEEeccCc
Confidence            2222  4456666666553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.50  E-value=1.1e-05  Score=73.13  Aligned_cols=173  Identities=18%  Similarity=0.129  Sum_probs=86.7

Q ss_pred             ccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe--CHHHHHHHHhcCccccEEEeeecCCcce--ee
Q 015886          129 RNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLES--LD  203 (398)
Q Consensus       129 ~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~  203 (398)
                      ..+|..+....+|++|+.+.+.+..- +....+-.|..|+..++.+  ..++    +..|..|..|.+.++.....  -.
T Consensus       104 s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~----~~~~~~l~~l~~~~n~l~~l~~~~  179 (565)
T KOG0472|consen  104 SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED----MVNLSKLSKLDLEGNKLKALPENH  179 (565)
T ss_pred             hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH----HHHHHHHHHhhccccchhhCCHHH
Confidence            34454444445555555554443222 3344444444444444443  1111    12233444444444322110  01


Q ss_pred             cCCCCCCceEEEecCCCcceeee---cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCc
Q 015886          204 LVNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE  280 (398)
Q Consensus       204 i~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  280 (398)
                      +. ..+|++|+...+ .++.++-   ...+|+-|++..+... ....|++|+.|++|+++.+.+..- ..++.+++++|.
T Consensus       180 i~-m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~  255 (565)
T KOG0472|consen  180 IA-MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLL  255 (565)
T ss_pred             HH-HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhh-HHHHhcccccce
Confidence            11 356666655443 3444443   2334444555544422 222678888888888876665432 234567788888


Q ss_pred             EEeccCccccccccc---cccccceEecccccc
Q 015886          281 YLSMTKCHKLTSVRI---SSPCLKTLILECCDK  310 (398)
Q Consensus       281 ~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~  310 (398)
                      .|++... .++.++.   ...+|++|++++...
T Consensus       256 vLDLRdN-klke~Pde~clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  256 VLDLRDN-KLKEVPDEICLLRSLERLDLSNNDI  287 (565)
T ss_pred             eeecccc-ccccCchHHHHhhhhhhhcccCCcc
Confidence            8888884 4555554   345677777776553

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.46  E-value=0.0048  Score=33.25  Aligned_cols=25  Identities=44%  Similarity=0.852  Sum_probs=22.4

Q ss_pred             ccceEEEEEEEe-CHHHHHHHHhcCc
Q 015886          162 SLRKLALREVCA-DDQAIASLISGCP  186 (398)
Q Consensus       162 ~L~~L~L~~~~~-~~~~l~~l~~~cp  186 (398)
                      +||+|+|.++.+ ++..+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 6668999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.00026  Score=61.53  Aligned_cols=96  Identities=22%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             CCCCceEEEecCCCcceeee--cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEec
Q 015886          207 LSNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (398)
Q Consensus       207 ~~~L~~L~l~~~~~l~~~~~--~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  284 (398)
                      +.+.++|+.++| ++..|.+  .+|.|+-|.++-+... ....+..|.+|++|+|..+.+.+-.-...+.++|+|++|-|
T Consensus        18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCC-CccHHHHHHhcccceeEEeeccccc-cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            467888999998 6667765  7899999999877632 23456789999999999999888666677889999999998


Q ss_pred             cCccccc--------cccccccccceEe
Q 015886          285 TKCHKLT--------SVRISSPCLKTLI  304 (398)
Q Consensus       285 ~~c~~~~--------~~~~~~~~L~~L~  304 (398)
                      ...+-..        .+...+|+|++|+
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            8732111        1223577888773

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.38  E-value=0.00056  Score=58.98  Aligned_cols=80  Identities=20%  Similarity=0.257  Sum_probs=36.6

Q ss_pred             CCCCceEEEecC-----CCcceeeecccCceEEEEeeeeccc--eeEeecCCCCCceEEeeccCCch--HHHhhhhcCCC
Q 015886          207 LSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIED--EWLCNGISKLP  277 (398)
Q Consensus       207 ~~~L~~L~l~~~-----~~l~~~~~~~p~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~  277 (398)
                      +|+||.|.++.+     ..+..+...+|+|+.+.++++....  ..--+..+++|..|++.++....  +--..++..+|
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            456666666544     2333333455666666666665221  01112344555555555443322  11122333445


Q ss_pred             CCcEEeccC
Q 015886          278 LLEYLSMTK  286 (398)
Q Consensus       278 ~L~~L~l~~  286 (398)
                      +|+.|+-..
T Consensus       144 ~L~~LD~~d  152 (260)
T KOG2739|consen  144 SLKYLDGCD  152 (260)
T ss_pred             hhccccccc
Confidence            555555444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.30  E-value=0.0001  Score=67.14  Aligned_cols=179  Identities=21%  Similarity=0.162  Sum_probs=115.5

Q ss_pred             CCccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--
Q 015886          125 RSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--  201 (398)
Q Consensus       125 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--  201 (398)
                      .....+++..++.+..|..|+..++.+... .....+.+|..|.+.++....-.- ..+. ...|++|+...+.- +.  
T Consensus       123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~-m~~L~~ld~~~N~L-~tlP  199 (565)
T KOG0472|consen  123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPE-NHIA-MKRLKHLDCNSNLL-ETLP  199 (565)
T ss_pred             ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCH-HHHH-HHHHHhcccchhhh-hcCC
Confidence            456678899999999999999999877554 778889999999999998721111 1111 46778877644321 11  


Q ss_pred             eecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEe-ecCCCCCceEEeeccCCchHHHhhhhcCCCC
Q 015886          202 LDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIEDEWLCNGISKLPL  278 (398)
Q Consensus       202 ~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  278 (398)
                      -.+.++.+|..|.+..+ .+..++  -.|..|..|+.+.+........ ...++.+..|++..+++......  +..+.+
T Consensus       200 ~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde--~clLrs  276 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRS  276 (565)
T ss_pred             hhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH--HHHhhh
Confidence            13444566666666655 222222  2566788888877763322222 35789999999998887652211  234688


Q ss_pred             CcEEeccCcccccccccccc--ccceEecccccc
Q 015886          279 LEYLSMTKCHKLTSVRISSP--CLKTLILECCDK  310 (398)
Q Consensus       279 L~~L~l~~c~~~~~~~~~~~--~L~~L~l~~c~~  310 (398)
                      |+.|++++. .+++++....  .|+.|.+.+.+.
T Consensus       277 L~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNPl  309 (565)
T KOG0472|consen  277 LERLDLSNN-DISSLPYSLGNLHLKFLALEGNPL  309 (565)
T ss_pred             hhhhcccCC-ccccCCcccccceeeehhhcCCch
Confidence            999999994 5555555433  566666666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.93  E-value=0.0052  Score=58.53  Aligned_cols=165  Identities=22%  Similarity=0.229  Sum_probs=109.2

Q ss_pred             CCeEEEEEecCCccccCCccccCCC-CeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVE-SLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      .+..+.+..  .....++......+ +|+.|+++++.+... .....+++|+.|+++++.+.+-.  ......+.|+.|.
T Consensus       117 ~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~~L~  192 (394)
T COG4886         117 NLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLNNLD  192 (394)
T ss_pred             ceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhhhee
Confidence            566666654  34456666666664 899999999988765 46788999999999999774322  2223679999999


Q ss_pred             eeecCCcceeec--CCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHH
Q 015886          193 IRSCEGLESLDL--VNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW  268 (398)
Q Consensus       193 l~~~~~~~~~~i--~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  268 (398)
                      ++++.... +..  .....|+.|.+.+......+.  -...++..+.+.+.........++.+++++.|+++++.+.+..
T Consensus       193 ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         193 LSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             ccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence            99874432 221  122458888888763222222  1445566666544442222345677888999999988876633


Q ss_pred             HhhhhcCCCCCcEEeccCc
Q 015886          269 LCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       269 ~~~~~~~~~~L~~L~l~~c  287 (398)
                      .   +....+++.|++++.
T Consensus       272 ~---~~~~~~l~~L~~s~n  287 (394)
T COG4886         272 S---LGSLTNLRELDLSGN  287 (394)
T ss_pred             c---ccccCccCEEeccCc
Confidence            2   667789999999884

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.84  E-value=0.01  Score=49.39  Aligned_cols=14  Identities=14%  Similarity=0.273  Sum_probs=9.5

Q ss_pred             cccCceEEEEeeee
Q 015886          227 KTSNVNALAIHQTY  240 (398)
Q Consensus       227 ~~p~L~~l~l~~~~  240 (398)
                      ..|+|+.|++.+..
T Consensus       138 klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  138 KLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCcceEeehhhhh
Confidence            56777777776654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.64  E-value=0.027  Score=47.01  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             CeeEEEEeccccCCCCccccCcccceEEEEEEEeC--HHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEec
Q 015886          140 SLHVLELSYCKLQQPSENVKLFSLRKLALREVCAD--DQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN  217 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~  217 (398)
                      +...++|+.+.+.....+..++.|.+|.|.+++++  +..+.   ...|+|..|.+.++...+--               
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~---------------  104 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELG---------------  104 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhh---------------
Confidence            34455666655544445556666777777666662  22232   23466666666654321100               


Q ss_pred             CCCcceeeecccCceEEEEeeeecc----ceeEeecCCCCCceEEeeccCCch
Q 015886          218 TSDIKRVEIKTSNVNALAIHQTYLF----PIEVNVSSCGNLKCLKFDFLPIED  266 (398)
Q Consensus       218 ~~~l~~~~~~~p~L~~l~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~  266 (398)
                        .+..+ ..||.|++|.+-|++..    --...+-.+|+|+.|++......+
T Consensus       105 --dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E  154 (233)
T KOG1644|consen  105 --DLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE  154 (233)
T ss_pred             --hcchh-ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence              00001 13445555555444411    112345678889999887655433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.64  E-value=0.0049  Score=54.95  Aligned_cols=37  Identities=35%  Similarity=0.580  Sum_probs=34.7

Q ss_pred             CCccCCCCC----HHHHHHHhccCChhHHHHHhhcccchhh
Q 015886            8 EVDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQ   44 (398)
Q Consensus         8 ~~D~i~~LP----deiL~~I~s~L~~~~~~~~~~vskrWr~   44 (398)
                      ..|.|..||    ++|...||+||+..++..|..|||+|+.
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            358899999    9999999999999999999999999985

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.58  E-value=0.0048  Score=38.19  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=11.9

Q ss_pred             CeeEEEEeccccCCCCc-cccCcccceEEEEEE
Q 015886          140 SLHVLELSYCKLQQPSE-NVKLFSLRKLALREV  171 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~~~-~~~~~~L~~L~L~~~  171 (398)
                      +|++|+++++.+...+. ...+++|+.|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            34444444444432222 333444444444333

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.57  E-value=0.0041  Score=56.85  Aligned_cols=57  Identities=25%  Similarity=0.186  Sum_probs=38.8

Q ss_pred             CCeEEEEEecCCccccCCcccc-CCCCeeEEEEeccccCCC--CccccCcccceEEEEE-EEe
Q 015886          115 EVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALRE-VCA  173 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~-~~~  173 (398)
                      +..+++++.  .....+|+..| ..++|++|+|+++.+...  ..+.++++|.+|.+.+ +++
T Consensus        68 ~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   68 ETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             cceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            455555554  34456777554 468899999998877543  5677788888887777 555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.0029  Score=52.55  Aligned_cols=89  Identities=20%  Similarity=0.263  Sum_probs=62.1

Q ss_pred             cCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceee---
Q 015886          130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD---  203 (398)
Q Consensus       130 ~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---  203 (398)
                      .+|.....--.++.++-+++.+...  ....+++.++.|.+.+|.. +|..+..+-...|+||.|+|++|+.++.-.   
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            3443333334567777777665544  5567788888888988887 888888887888999999999888775433   


Q ss_pred             cCCCCCCceEEEecC
Q 015886          204 LVNLSNLKEIILVNT  218 (398)
Q Consensus       204 i~~~~~L~~L~l~~~  218 (398)
                      +..+++|+.|.+.+-
T Consensus       172 L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDL  186 (221)
T ss_pred             HHHhhhhHHHHhcCc
Confidence            334577777777644

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.38  E-value=0.0081  Score=53.15  Aligned_cols=38  Identities=26%  Similarity=0.506  Sum_probs=32.0

Q ss_pred             cCCccCCCCCHHHHHHHhcc-----CChhHHHHHhhcccchhh
Q 015886            7 LEVDGISTLPEPILHHILSF-----LPFKEVAQTCLLSKRWKQ   44 (398)
Q Consensus         7 ~~~D~i~~LPdeiL~~I~s~-----L~~~~~~~~~~vskrWr~   44 (398)
                      +..+.|..||||||..||..     ++.+++.+++.|||.|+.
T Consensus       102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            34456789999999999964     557999999999999985

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.15  E-value=0.012  Score=36.37  Aligned_cols=34  Identities=35%  Similarity=0.410  Sum_probs=23.4

Q ss_pred             CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      ++|++|+++++.+.+  +...+..+++|+.|+++++
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            467888888877765  3444677888888888886

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.04  E-value=0.0023  Score=55.80  Aligned_cols=77  Identities=23%  Similarity=0.233  Sum_probs=56.0

Q ss_pred             CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCc-------ceeecCCCC
Q 015886          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGL-------ESLDLVNLS  208 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~-------~~~~i~~~~  208 (398)
                      ..+.|+.|.|+-+.+........|.+|+.|+|..|.+ +-+.+.. +.+.|+|+.|+|..++-.       ....++.+|
T Consensus        39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            4567888888888777667778888999999988888 4444544 678899999999875432       233455578


Q ss_pred             CCceEE
Q 015886          209 NLKEII  214 (398)
Q Consensus       209 ~L~~L~  214 (398)
                      +|++|+
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            888885

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=0.011  Score=49.30  Aligned_cols=62  Identities=19%  Similarity=0.159  Sum_probs=35.3

Q ss_pred             cCCCCCceEEeeccC-CchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEecccccc
Q 015886          249 SSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDK  310 (398)
Q Consensus       249 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~  310 (398)
                      ..++.++.|.+.++. +.+..+..+-...|+|+.|+|++|+.+++.+.    .+++|+.|.|.+=+.
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            344555555555444 34455555555566777777777766666555    455666665554443

>PLN03150 hypothetical protein; Provisional

Probab=94.67  E-value=0.038  Score=55.83  Aligned_cols=102  Identities=12%  Similarity=0.076  Sum_probs=66.8

Q ss_pred             CCceEEEecCCCcceee---ecccCceEEEEeeeec-cceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEec
Q 015886          209 NLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (398)
Q Consensus       209 ~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  284 (398)
                      .++.|.+.++.--..+.   ..+++|+.|+++++.. ......++.+++|+.|+|+++.+.... ...+..+++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEEC
Confidence            36777777762111121   2568899999988762 233345788999999999988877543 333667899999999


Q ss_pred             cCcccccccccc----ccccceEeccccccc
Q 015886          285 TKCHKLTSVRIS----SPCLKTLILECCDKL  311 (398)
Q Consensus       285 ~~c~~~~~~~~~----~~~L~~L~l~~c~~~  311 (398)
                      +++.....++..    ..++..+++.++..+
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccc
Confidence            987544444432    234556777665544

>PLN03150 hypothetical protein; Provisional

Probab=94.03  E-value=0.036  Score=55.98  Aligned_cols=78  Identities=19%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             CeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEE
Q 015886          140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL  215 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l  215 (398)
                      .++.|+|.++.+...  .....+++|+.|+|+++.+... +...+..++.|+.|++++|.....+  .+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            378899998877533  4566789999999999887432 2333678999999999998654333  3556799999999


Q ss_pred             ecC
Q 015886          216 VNT  218 (398)
Q Consensus       216 ~~~  218 (398)
                      .++
T Consensus       498 s~N  500 (623)
T PLN03150        498 NGN  500 (623)
T ss_pred             cCC
Confidence            987

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.47  E-value=0.053  Score=50.28  Aligned_cols=36  Identities=31%  Similarity=0.405  Sum_probs=32.4

Q ss_pred             CCCCCHHHHHHHhccCC-hhHHHHHhhcccchhhhhc
Q 015886           12 ISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQ   47 (398)
Q Consensus        12 i~~LPdeiL~~I~s~L~-~~~~~~~~~vskrWr~lw~   47 (398)
                      .++||+|+|..|..+|+ .-|++|.+.|||.||....
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            67899999999999996 6799999999999998544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.30  E-value=0.26  Score=43.23  Aligned_cols=153  Identities=18%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             ccccCcccceEEEEEEEe---CHHHHHHHHhcCccccEEEeeecCCc----cee-----------ecCCCCCCceEEEec
Q 015886          156 ENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGL----ESL-----------DLVNLSNLKEIILVN  217 (398)
Q Consensus       156 ~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~~----~~~-----------~i~~~~~L~~L~l~~  217 (398)
                      ....||.|++.+|+.+.|   ..+.+..++++...|++|.+.+|..-    ..+           .+.+-|.|+......
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            445677777888877777   33456677888888888888877321    001           112236777776655


Q ss_pred             CCCcceee-------e-cccCceEEEEeeeeccce------eEeecCCCCCceEEeeccCCchH---HHhhhhcCCCCCc
Q 015886          218 TSDIKRVE-------I-KTSNVNALAIHQTYLFPI------EVNVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLE  280 (398)
Q Consensus       218 ~~~l~~~~-------~-~~p~L~~l~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~  280 (398)
                      + .+...+       . .-.+|+.+.+..+...|.      ...+..+.+|+.|+|..+.++..   .+...+..-++|+
T Consensus       167 N-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 N-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             c-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            4 111111       1 113677777765553332      12245678999999998876653   3444456678899


Q ss_pred             EEeccCccc----cccccc-----cccccceEeccccc
Q 015886          281 YLSMTKCHK----LTSVRI-----SSPCLKTLILECCD  309 (398)
Q Consensus       281 ~L~l~~c~~----~~~~~~-----~~~~L~~L~l~~c~  309 (398)
                      .|.+..|-.    ...+..     ..|+|..|...+..
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            999999822    222221     45677777655544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.94  E-value=0.005  Score=60.69  Aligned_cols=119  Identities=18%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             eeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCC--cceeecCCCCCCceEEEec
Q 015886          141 LHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG--LESLDLVNLSNLKEIILVN  217 (398)
Q Consensus       141 L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~--~~~~~i~~~~~L~~L~l~~  217 (398)
                      |...+.+.+++... ....-+|.|+.|+|++|++.+-.   .+..||.|++|+|+++.-  +..+...+|. |..|++.+
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            34444444444332 34445677788888887774332   245678888888877632  2233333333 66666666


Q ss_pred             CCCcceee-e-cccCceEEEEeeeec--cceeEeecCCCCCceEEeeccCC
Q 015886          218 TSDIKRVE-I-KTSNVNALAIHQTYL--FPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       218 ~~~l~~~~-~-~~p~L~~l~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      + .++.+. + +..+|+.|+++.+.-  -....-+..+..|+.|.|.||.+
T Consensus       242 N-~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 N-ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             c-HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5 222222 1 344566666654431  11111123455666666666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=89.77  E-value=0.073  Score=51.07  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             ccCCCCeeEEEEeccccCCCCc-cccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCce
Q 015886          135 IFYVESLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKE  212 (398)
Q Consensus       135 ~~~~~~L~~L~L~~~~l~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~  212 (398)
                      +..+++|+.|++..+.+..... ...+++|+.|+++++.+ +-..+.    .++.|+.|++.+|.....-....+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhhc
Confidence            4456778888888887765544 66788888888888877 334433    34558888888775543333333567777


Q ss_pred             EEEecCC--Cccee-eecccCceEEEEeeee
Q 015886          213 IILVNTS--DIKRV-EIKTSNVNALAIHQTY  240 (398)
Q Consensus       213 L~l~~~~--~l~~~-~~~~p~L~~l~l~~~~  240 (398)
                      +.+.++.  .+... .....+++.+.+.+..
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            7777761  11110 1344566666666554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.60  E-value=0.2  Score=26.83  Aligned_cols=18  Identities=28%  Similarity=0.527  Sum_probs=10.4

Q ss_pred             CCCCcEEeccCccccccc
Q 015886          276 LPLLEYLSMTKCHKLTSV  293 (398)
Q Consensus       276 ~~~L~~L~l~~c~~~~~~  293 (398)
                      ||+|+.|+|++|..+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            456666666666555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=89.20  E-value=0.047  Score=52.35  Aligned_cols=124  Identities=22%  Similarity=0.165  Sum_probs=79.4

Q ss_pred             CCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886          138 VESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (398)
Q Consensus       138 ~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l  215 (398)
                      +..++.+.+..+.+... .....+.+|+.|++.++.+ .-..   .+..+++|+.|+++++....-..+..++.|+.|.+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~---~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN---LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc---chhhhhcchheeccccccccccchhhccchhhhee
Confidence            44455555555555432 4467788999999988876 2222   25678999999999886554445555677888888


Q ss_pred             ecCCCcceeee--cccCceEEEEeeeeccceeEe-ecCCCCCceEEeeccCCc
Q 015886          216 VNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIE  265 (398)
Q Consensus       216 ~~~~~l~~~~~--~~p~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  265 (398)
                      .++ .+..+.-  ..++|+.++++++........ ...+.+++.+.+.++.+.
T Consensus       148 ~~N-~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGN-LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccC-cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            887 2222322  266778888877763322221 367778888888766543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=89.09  E-value=0.19  Score=49.55  Aligned_cols=40  Identities=28%  Similarity=0.475  Sum_probs=36.5

Q ss_pred             ccCCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhh
Q 015886            6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (398)
Q Consensus         6 ~~~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~l   45 (398)
                      ....|.++.||.|+..+||++|+.++++++++||+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3456899999999999999999999999999999999864

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.13  E-value=0.57  Score=22.21  Aligned_cols=10  Identities=20%  Similarity=0.245  Sum_probs=4.4

Q ss_pred             CCcEEeccCc
Q 015886          278 LLEYLSMTKC  287 (398)
Q Consensus       278 ~L~~L~l~~c  287 (398)
                      +|+.|++++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            4455555544

...

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=85.82  E-value=0.34  Score=30.95  Aligned_cols=27  Identities=19%  Similarity=0.151  Sum_probs=23.1

Q ss_pred             CcceEEEeccce---------eeccccccccceeee
Q 015886          320 NLSIFKYHGDLI---------SFSSNALSLSETSLC  346 (398)
Q Consensus       320 ~L~~l~~~~~~~---------~~~~~~~~L~~l~i~  346 (398)
                      +|+.+++.|+.+         ++++|++.|++|.|.
T Consensus        15 ~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen   15 HLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             eeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            678888887776         999999999999985

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF13013 F-box-like_2: F-box-like domain

Probab=85.23  E-value=0.64  Score=34.99  Aligned_cols=30  Identities=13%  Similarity=0.140  Sum_probs=26.8

Q ss_pred             cCCCCCHHHHHHHhccCChhHHHHHhhccc
Q 015886           11 GISTLPEPILHHILSFLPFKEVAQTCLLSK   40 (398)
Q Consensus        11 ~i~~LPdeiL~~I~s~L~~~~~~~~~~vsk   40 (398)
                      .+.+||+||+..||.+-...+.......|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            378899999999999999999988887776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=85.21  E-value=0.06  Score=51.88  Aligned_cols=132  Identities=17%  Similarity=0.250  Sum_probs=75.4

Q ss_pred             cCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeC--HHHHHHHHhcCccccEEEeeecCCccee-ecCC
Q 015886          130 NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCAD--DQAIASLISGCPLIEYLEIRSCEGLESL-DLVN  206 (398)
Q Consensus       130 ~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~~~~~~~~-~i~~  206 (398)
                      .+|..+.....|+.|+|+.+.+...+...++--|+.|.+++++.+  .+.+    ...+.|.+|+.+.|....-. .+..
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~i----g~~~tl~~ld~s~nei~slpsql~~  187 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEI----GLLPTLAHLDVSKNEIQSLPSQLGY  187 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCccc----ccchhHHHhhhhhhhhhhchHHhhh
Confidence            455555666667777777776655544445555777777777651  1121    23456666666655332111 1223


Q ss_pred             CCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCch
Q 015886          207 LSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED  266 (398)
Q Consensus       207 ~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (398)
                      +.+|+.|.+..+ .+..+.  ...-.|..|+++.+......+.|..+..|+.|.|.++.+..
T Consensus       188 l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  188 LTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            455666665554 222222  12334777888777755566777788888888887776554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.86  E-value=0.73  Score=23.96  Aligned_cols=22  Identities=27%  Similarity=0.126  Sum_probs=13.1

Q ss_pred             CCCCceEEeeccCCchHHHhhh
Q 015886          251 CGNLKCLKFDFLPIEDEWLCNG  272 (398)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~  272 (398)
                      +++|++|+|+++.++++....+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3677788887777777665543

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=84.74  E-value=0.67  Score=35.93  Aligned_cols=12  Identities=17%  Similarity=0.409  Sum_probs=4.7

Q ss_pred             hcCccccEEEee
Q 015886          183 SGCPLIEYLEIR  194 (398)
Q Consensus       183 ~~cp~Le~L~l~  194 (398)
                      ..|+.|+.+.+.
T Consensus         9 ~~~~~l~~i~~~   20 (129)
T PF13306_consen    9 YNCSNLESITFP   20 (129)
T ss_dssp             TT-TT--EEEET
T ss_pred             hCCCCCCEEEEC
Confidence            445555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=83.91  E-value=0.24  Score=38.93  Aligned_cols=83  Identities=14%  Similarity=0.040  Sum_probs=51.1

Q ss_pred             CeEEEEEecCCc-cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          116 VKELVLVHWRSE-RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       116 l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      +..++++.|... -...+..+.....|+..+|+++.+...  .....+|.++.|+|.++.+++--..  +...|.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcc
Confidence            344444443221 223344455556677778888877654  3345577888888888877443322  56678888888


Q ss_pred             eeecCCcc
Q 015886          193 IRSCEGLE  200 (398)
Q Consensus       193 l~~~~~~~  200 (398)
                      ++.+....
T Consensus       107 l~~N~l~~  114 (177)
T KOG4579|consen  107 LRFNPLNA  114 (177)
T ss_pred             cccCcccc
Confidence            88776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=83.46  E-value=0.8  Score=23.31  Aligned_cols=9  Identities=44%  Similarity=0.789  Sum_probs=4.6

Q ss_pred             CcEEeccCc
Q 015886          279 LEYLSMTKC  287 (398)
Q Consensus       279 L~~L~l~~c  287 (398)
                      |+.|++++|
T Consensus         2 L~~Ldls~n   10 (22)
T PF00560_consen    2 LEYLDLSGN   10 (22)
T ss_dssp             ESEEEETSS
T ss_pred             ccEEECCCC
Confidence            455555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=80.28  E-value=2  Score=33.14  Aligned_cols=8  Identities=50%  Similarity=0.700  Sum_probs=2.6

Q ss_pred             CCCceEEE
Q 015886          208 SNLKEIIL  215 (398)
Q Consensus       208 ~~L~~L~l  215 (398)
                      ++|+.+.+
T Consensus        12 ~~l~~i~~   19 (129)
T PF13306_consen   12 SNLESITF   19 (129)
T ss_dssp             TT--EEEE
T ss_pred             CCCCEEEE
Confidence            34444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	7e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 48/309 (15%), Positives = 111/309 (35%), Gaps = 47/309 (15%)

Query: 12  ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSL 71
             +LP+ +L  I S L   E+ +   + KRW +            + ++    + +  + 
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR------------LASDESLWQTLDLTG 56

Query: 72  EPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNL 131
           +    +   +++S    +         +  +       +      + + L +   E   L
Sbjct: 57  KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV------QHMDLSNSVIEVSTL 110

Query: 132 PEIIFYVESLHVLELSYCKLQQPSENV--KLFSLRKLALREVCA-DDQAIASLISGCPLI 188
             I+     L  L L   +L  P  N   K  +L +L L       + A+ +L+S C  +
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 189 EYLEIRSC-----EGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP 243
           + L +  C     + ++         + ++ L          ++ S+++ L      L  
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK----NLQKSDLSTLVRRCPNL-- 224

Query: 244 IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS----PC 299
           + +++S    LK          ++       +L  L++LS+++C+ +    +      P 
Sbjct: 225 VHLDLSDSVMLK----------NDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273

Query: 300 LKTLILECC 308
           LKTL +   
Sbjct: 274 LKTLQVFGI 282

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 57/335 (17%), Positives = 104/335 (31%), Gaps = 40/335 (11%)

Query: 7   LEVDGISTLPEPILHHILSFLPFKEVAQTCLL-SKRWKQVW-QTFPDVEVGGM-FTNPRK 63
           ++     + PE +L H+ SF+   +   +  L  K W ++       V +G     +P  
Sbjct: 1   MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVH 123
                  +    L  +                  P   +++     L      +E+ L  
Sbjct: 61  VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL------EEIRLKR 114

Query: 124 WRSERRNLPEIIFYVESLHVLELSYCK------LQQPSENVKLFSLRKLALRE---VCAD 174
                  L  I    ++  VL LS C+      L   +   +  +L++L LRE       
Sbjct: 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR--NLKELDLRESDVDDVS 172

Query: 175 DQAIASLISGCPLIEYLEIRSC------EGLESLDLVNLSNLKEIIL---VNTSDIKRVE 225
              ++        +  L I           LE L +    NLK + L   V    +  + 
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRAVPLEKLATLL 231

Query: 226 IKTSNVNALAIHQ-------TYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278
            +   +  L                + V +S C  L+CL   F      +L    S    
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSR 290

Query: 279 LEYLSMTKCHKLTS--VRISSPCLKTLILECCDKL 311
           L  L+++     +   V++   C K   L   D +
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 3e-10
 Identities = 71/423 (16%), Positives = 149/423 (35%), Gaps = 125/423 (29%)

Query: 1   MMRIGVL---EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVG-- 55
           M +  +L   E+D I    + +   +  F          LLSK+ +++ Q F  VE    
Sbjct: 41  MPK-SILSKEEIDHIIMSKDAVSGTLRLF--------WTLLSKQ-EEMVQKF--VEEVLR 88

Query: 56  ---GMFTNPRKSKEILTSLE-------------------PALLNRQRKMISIKKFSLELD 93
                  +P K+++   S+                       ++R +  + +++  LEL 
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 94  LINSPENASLAGRCLG-----LAIESEVKELVL------VHWRS-ERRNLPE-IIFYVES 140
                +N  + G  LG     +A++  +   V       + W + +  N PE ++  ++ 
Sbjct: 149 ---PAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 141 L-HVLELSYCKLQQPSENVKL-FSLRKLALREVCADDQAIASLISGCPLIEYL-EIRSCE 197
           L + ++ ++      S N+KL     +  LR +         L     L+  L  +++ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LV--LLNVQNAK 257

Query: 198 GLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257
              + +L    + K  IL+ T             + L+   T    ++ +  +       
Sbjct: 258 AWNAFNL----SCK--ILLTTRFK-------QVTDFLSAATTTHISLDHHSMT------- 297

Query: 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL-TSVRISSPCLKTLILECCDKLIQVEI 316
                P E + L        LL+YL   +   L   V  ++P   ++I E     I+  +
Sbjct: 298 ---LTPDEVKSL--------LLKYLDC-RPQDLPREVLTTNPRRLSIIAE----SIRDGL 341

Query: 317 ETPNLSIFKY-----HGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKF 371
            T +   +K+        +I  S N L  +E                 + F+ L++F   
Sbjct: 342 ATWDN--WKHVNCDKLTTIIESSLNVLEPAEYR---------------KMFDRLSVFPPS 384

Query: 372 SKV 374
           + +
Sbjct: 385 AHI 387

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 45/354 (12%), Positives = 100/354 (28%), Gaps = 43/354 (12%)

Query: 12  ISTLPEPILHHILSFLPFKEVAQTCLL-SKRWKQV-WQTFPDVEVGGMFT-NPRKSKEIL 68
                + ++  +++++   +   +  L  +RW ++  +T   V +   +T  P +     
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRC--------------------L 108
            +L    L  + +               +P    ++                       L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 109 GLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQ---------PSENV 158
             A   +++ L L          L  I+ +   +  L +      +            N 
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV----NLSNLKEII 214
            L  L            + + ++   C  +  +++   E LE +       NL       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 215 LVNTSDIKRVEIKTSN---VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271
           L     +    +       +  L +       + +       ++ L   +  +E E  C 
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312

Query: 272 GISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLS 322
            I K P LE L          + +       LK L +E       +E E   +S
Sbjct: 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 8  EVDGISTLPEPILHHILSFLPFKEVAQTC-LLSKRWKQV 45
           V+ ++ LPEP+L  +L+ LP  E+ Q C L+  RWK++
Sbjct: 47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 50/251 (19%), Positives = 78/251 (31%), Gaps = 26/251 (10%)

Query: 68  LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSE 127
                 A  NR          +       +          L  A +     L L      
Sbjct: 35  WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL--RSVP 92

Query: 128 RRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCP 186
               P+  F +  L  + +    L + P    +   L  L L              +  P
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL--------------ARNP 138

Query: 187 LIEYL--EIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKRVEIKTSNVNALAIHQTYLFP 243
           L   L   I S   L  L +     L E+   + ++D         N+ +L +  T +  
Sbjct: 139 LRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197

Query: 244 IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV--RISS-PCL 300
           +  ++++  NLK LK    P+    L   I  LP LE L +  C  L +          L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 301 KTLILECCDKL 311
           K LIL+ C  L
Sbjct: 256 KRLILKDCSNL 266

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
            +LP+ +L  I S L   E+ +   + KRW ++
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTF 49
           ++ LP  +  +ILSFL   ++ Q    +  W +       W+ F
Sbjct: 4  TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 123 HWRSERRNLPEIIFYVESLHVLELSYCKL--QQPSENVKLFSLRKLALREVCA-DDQAIA 179
            W+ +  +LP        +  ++ +   +          L  + K+ L +    +D  + 
Sbjct: 45  RWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE 104

Query: 180 SLISGCPL---IEYLEIRSC-----EGLESLDLVNLSNLKEIILVNTSDIKRVEI 226
            L     L   +  +EI SC     +G+ +  L +  NLK + L +   +K  E 
Sbjct: 105 RLSQLENLQKSMLEMEIISCGNVTDKGIIA--LHHFRNLKYLFLSDLPGVKEKEK 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.59
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.48
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.48
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.47
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.45
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.43
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.41
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.4
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.39
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.38
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.32
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.28
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.2
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.16
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.01
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.97
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.95
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.93
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.91
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.89
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.84
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.67
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.61
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.38
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.34
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.09
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.02
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.97
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.88
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.81
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.8
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.79
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.73
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.59
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.53
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.32
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.27
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.19
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.98
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.99
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.85
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.45
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.87
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	88.09

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.6e-24  Score=215.75  Aligned_cols=178  Identities=17%  Similarity=0.224  Sum_probs=99.8

Q ss_pred             CccCCCCCHHHHHHHhccCC-hhHHHHHhhcccchhhhhcc-cceeeecCcCCCC-------------------------
Q 015886            9 VDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT-FPDVEVGGMFTNP-------------------------   61 (398)
Q Consensus         9 ~D~i~~LPdeiL~~I~s~L~-~~~~~~~~~vskrWr~lw~~-~~~l~~~~~~~~~-------------------------   61 (398)
                      .|+++.|||||+.+||+||+ .+|+++++.|||||+++... ...+.+...+...                         
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~   82 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF   82 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence            58999999999999999999 99999999999999977211 1222332110000                         


Q ss_pred             -----chhhHHHHHHHHHHhccccCCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEec-CCccccCCccc
Q 015886           62 -----RKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW-RSERRNLPEII  135 (398)
Q Consensus        62 -----~~~~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~-~~~~~~l~~~~  135 (398)
                           .....+...+....    .....++.+.++....    ....... +. ...+++++|++..+ ......++...
T Consensus        83 ~l~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~~~----~~~~~~~-l~-~~~~~L~~L~L~~~~~~~~~~l~~~~  152 (594)
T 2p1m_B           83 NLVPDGWGGYVYPWIEAMS----SSYTWLEEIRLKRMVV----TDDCLEL-IA-KSFKNFKVLVLSSCEGFSTDGLAAIA  152 (594)
T ss_dssp             TCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESCBC----CHHHHHH-HH-HHCTTCCEEEEESCEEEEHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHH----HhCCCCCeEEeeCcEE----cHHHHHH-HH-HhCCCCcEEeCCCcCCCCHHHHHHHH
Confidence                 00000011111111    1123555555553211    1111111 10 02357777777764 22222344444


Q ss_pred             cCCCCeeEEEEeccccCCC------CccccCcccceEEEEEEE--eCHHHHHHHHhcCccccEEEeeec
Q 015886          136 FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVC--ADDQAIASLISGCPLIEYLEIRSC  196 (398)
Q Consensus       136 ~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~~  196 (398)
                      ..+++|++|++++|.+...      .....+++|+.|+++++.  +++..+..++..||+|+.|++.+|
T Consensus       153 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            5678888888888775432      223367789999998885  577888888888999999999877

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=2.1e-24  Score=214.85  Aligned_cols=329  Identities=13%  Similarity=0.117  Sum_probs=173.4

Q ss_pred             cCCccCC----CCCHHHHHHHhccC-ChhHHHHHhhcccchhhhhcccce-eeecCcCCCCchhhHH-------------
Q 015886            7 LEVDGIS----TLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPD-VEVGGMFTNPRKSKEI-------------   67 (398)
Q Consensus         7 ~~~D~i~----~LPdeiL~~I~s~L-~~~~~~~~~~vskrWr~lw~~~~~-l~~~~~~~~~~~~~~~-------------   67 (398)
                      ++.|+++    .||||++.+||+|| +.+|++++++|||||++++...+. +.+...+...  ...+             
T Consensus         4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~   81 (592)
T 3ogk_B            4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTAT--PDRLSRRFPNLRSLKLK   81 (592)
T ss_dssp             --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSC--HHHHHHHCTTCSEEEEE
T ss_pred             hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccC--hHHHHHhCCCCeEEEec
Confidence            4456666    89999999999999 899999999999999987543322 2222111110  0000             


Q ss_pred             -------------------HHHHHHHHhccccCCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecC-Cc
Q 015886           68 -------------------LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SE  127 (398)
Q Consensus        68 -------------------~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~  127 (398)
                                         ...+....    .....++.+.++..     ......-.|+......++++|++..+. ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~-----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~  152 (592)
T 3ogk_B           82 GKPRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRM-----IVSDLDLDRLAKARADDLETLKLDKCSGFT  152 (592)
T ss_dssp             CSCGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESC-----BCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred             CCcchhhcccccccccccchHHHHHHH----hhCCCCCeEEeecc-----EecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence                               00011110    01234445444422     112222333333333347777666533 12


Q ss_pred             cccCCccccCCCCeeEEEEeccccCCC------CccccCcccceEEEEEEEeC---HHHHHHHHhcCccccEEEeeecCC
Q 015886          128 RRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSCEG  198 (398)
Q Consensus       128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~~~~  198 (398)
                      ...++.....+++|++|+|++|.+...      .....+++|+.|+++++.++   +..+..++..||+|+.|++.+|..
T Consensus       153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            222333334567777777777765322      12345677777777776663   566777777788888888877642


Q ss_pred             cc------------eee----------------cCCCCCCceEEEecC--CCcceeeecccCceEEEEeeeecc--ceeE
Q 015886          199 LE------------SLD----------------LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLF--PIEV  246 (398)
Q Consensus       199 ~~------------~~~----------------i~~~~~L~~L~l~~~--~~l~~~~~~~p~L~~l~l~~~~~~--~~~~  246 (398)
                      ..            .+.                +..+++|+.|.+.++  ..+..+...+++|++|+++++...  ....
T Consensus       233 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~  312 (592)
T 3ogk_B          233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT  312 (592)
T ss_dssp             GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred             HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence            21            000                111233444444333  112222224566677776665511  1111


Q ss_pred             eecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccC----------cccccccc-----ccccccceEeccccccc
Q 015886          247 NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK----------CHKLTSVR-----ISSPCLKTLILECCDKL  311 (398)
Q Consensus       247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~~~~~~-----~~~~~L~~L~l~~c~~~  311 (398)
                      .+..+++|++|++. +.+.+..+..+...+++|+.|++.+          |..++...     ..+++|++|++ .|..+
T Consensus       313 ~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l  390 (592)
T 3ogk_B          313 LIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI  390 (592)
T ss_dssp             HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred             HHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence            23566777777776 4455555666666677777777774          54444322     24667777777 34443


Q ss_pred             e-----eccccCCCcceEEEeccc---e-----------eeccccccccceeeeec
Q 015886          312 I-----QVEIETPNLSIFKYHGDL---I-----------SFSSNALSLSETSLCFS  348 (398)
Q Consensus       312 ~-----~~~~~~p~L~~l~~~~~~---~-----------~~~~~~~~L~~l~i~~~  348 (398)
                      .     .+...+|+|+.|.+.+..   .           .++.++++|+++.++.+
T Consensus       391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~  446 (592)
T 3ogk_B          391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR  446 (592)
T ss_dssp             CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred             cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence            2     122346777777776422   1           22455777888887543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.9e-23  Score=193.20  Aligned_cols=252  Identities=19%  Similarity=0.217  Sum_probs=138.0

Q ss_pred             CccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhcc---cceeeecCcCCCCchhhHHHHHHHHHHhccccCCCCc
Q 015886            9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT---FPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISI   85 (398)
Q Consensus         9 ~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l   85 (398)
                      ...++.||+|++.+||+||+.+|+++++.|||+|+++...   ...+++...-                           
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~---------------------------   58 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN---------------------------   58 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB---------------------------
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccccc---------------------------
Confidence            4568999999999999999999999999999999987532   1112222000                           


Q ss_pred             eEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC---CccccCcc
Q 015886           86 KKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFS  162 (398)
Q Consensus        86 ~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~  162 (398)
                                   ..    ...+.....++++.+++....  ....+..++.+++|++|++++|.+...   .....+++
T Consensus        59 -------------~~----~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           59 -------------LH----PDVTGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             -------------CC----HHHHHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             -------------CC----HHHHHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence                         00    112223334566666655421  122233355667777777777765421   33456677


Q ss_pred             cceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--e--ecCCCCCCceEEEecCCCccee-----eeccc-Cce
Q 015886          163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--L--DLVNLSNLKEIILVNTSDIKRV-----EIKTS-NVN  232 (398)
Q Consensus       163 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~--~i~~~~~L~~L~l~~~~~l~~~-----~~~~p-~L~  232 (398)
                      |++|+|+++.+++..... +..+|+|++|++.+|..+..  +  .+..+++|++|++.+|..+...     ...+| +|+
T Consensus       120 L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             CSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            777777777666555443 45577777777777644432  1  1233566666666666333221     12445 566


Q ss_pred             EEEEeeeec----cceeEeecCCCCCceEEeeccC-CchHHHhhhhcCCCCCcEEeccCccccccc----cccccccceE
Q 015886          233 ALAIHQTYL----FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTL  303 (398)
Q Consensus       233 ~l~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L  303 (398)
                      +|+++++..    ......+..+++|++|+++++. +++..+.. +..+++|+.|++++|..+...    ...+++|++|
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence            666655520    1111123445555555555555 33333332 344555555555555433222    1134555555


Q ss_pred             ecccc
Q 015886          304 ILECC  308 (398)
Q Consensus       304 ~l~~c  308 (398)
                      ++++|
T Consensus       278 ~l~~~  282 (336)
T 2ast_B          278 QVFGI  282 (336)
T ss_dssp             ECTTS
T ss_pred             eccCc
Confidence            55555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.66  E-value=6.6e-16  Score=141.89  Aligned_cols=195  Identities=20%  Similarity=0.231  Sum_probs=122.2

Q ss_pred             HHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCcccc
Q 015886          111 AIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (398)
Q Consensus       111 ~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  189 (398)
                      ....++++|+++.+..  ..+|..++.+++|++|+++++.+... .....+++|++|+|+++.+.  .+..-+..+++|+
T Consensus        78 ~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~  153 (328)
T 4fcg_A           78 ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR  153 (328)
T ss_dssp             HTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred             ccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence            3346899999987443  37888888899999999999988633 45678999999999999875  2333467889999


Q ss_pred             EEEeeecCCcceeec-----------CCCCCCceEEEecCCCcceee---ecccCceEEEEeeeeccceeEeecCCCCCc
Q 015886          190 YLEIRSCEGLESLDL-----------VNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLK  255 (398)
Q Consensus       190 ~L~l~~~~~~~~~~i-----------~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~  255 (398)
                      .|++++|.....+..           ..+++|+.|++.+| .+..++   ..+++|++|+++++........+..+++|+
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~  232 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence            999999866543321           12566777776666 222222   245566666666555222222345566666


Q ss_pred             eEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccc
Q 015886          256 CLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKL  311 (398)
Q Consensus       256 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~  311 (398)
                      .|+++++.+.... ...+..+++|+.|++++|.....++.   .+++|++|+|++|...
T Consensus       233 ~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          233 ELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             EEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             EEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            6666655443321 22244556666666666544444443   3455666666665554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.59  E-value=7.9e-15  Score=135.79  Aligned_cols=117  Identities=15%  Similarity=0.119  Sum_probs=54.3

Q ss_pred             ccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc--ccccccceEec
Q 015886          228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLIL  305 (398)
Q Consensus       228 ~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l  305 (398)
                      .++|+.++++++...... .+..+++|++|+++++.+.....   +..+++|+.|++++|. ++.+.  ..+++|++|++
T Consensus       198 l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNV  272 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEEC
T ss_pred             CCccceeecccCCCCCCc-hhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEc
Confidence            344555555444311110 14455555555555555443211   4455556666555542 22221  13455666666


Q ss_pred             cccccce-eccccCCCcceEEEeccce-----eeccccccccceeeeecc
Q 015886          306 ECCDKLI-QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       306 ~~c~~~~-~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~  349 (398)
                      ++|.... .....+++|+.|.+.++..     ..+.++++|++++++.+.
T Consensus       273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             cCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            5553321 2234455566665555544     334445556666654443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=6.6e-15  Score=135.23  Aligned_cols=206  Identities=20%  Similarity=0.243  Sum_probs=159.9

Q ss_pred             CCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886          138 VESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (398)
Q Consensus       138 ~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~  214 (398)
                      ..+++.|+++++.+... .....+++|++|+|+++.+.  .+...+..+++|+.|++++|... .+  .+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            47899999999988644 55667999999999999875  23333578899999999998544 22  355679999999


Q ss_pred             EecCCCcceeee------------cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEE
Q 015886          215 LVNTSDIKRVEI------------KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL  282 (398)
Q Consensus       215 l~~~~~l~~~~~------------~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  282 (398)
                      +.+|.....++.            .+++|+.|+++++........++.+++|++|+++++.+..  +...+..+++|+.|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence            999854444432            3889999999998744444457889999999999998774  23346789999999


Q ss_pred             eccCccccccccc---cccccceEeccccccceec---cccCCCcceEEEeccce-----eeccccccccceeeeec
Q 015886          283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS  348 (398)
Q Consensus       283 ~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~  348 (398)
                      ++++|.....++.   .+++|++|++++|.....+   ...+++|+.|.++++..     ..+.+.++|+.+.+..+
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            9999876666654   5789999999999887433   46788999999999765     66777888888877433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.55  E-value=1.7e-14  Score=133.57  Aligned_cols=205  Identities=18%  Similarity=0.163  Sum_probs=82.0

Q ss_pred             ccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee-ecCCCCCCceE
Q 015886          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEI  213 (398)
Q Consensus       135 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~-~i~~~~~L~~L  213 (398)
                      +..+++|++|++++|.+...+....+++|++|+++++.+.+-..   +..+++|+.|++.+|.....+ .+..+++|+.|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            33444555555555444433334444555555554444421110   334455555555444333221 12333444555


Q ss_pred             EEecCCCccee--eecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccc
Q 015886          214 ILVNTSDIKRV--EIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (398)
Q Consensus       214 ~l~~~~~l~~~--~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  291 (398)
                      .+.+|. +..+  ...+++|++|+++++...... .+..+++|+.|+++++.+.+...   +..+++|+.|++++|. ++
T Consensus       161 ~l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~  234 (347)
T 4fmz_A          161 TVTESK-VKDVTPIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK-IT  234 (347)
T ss_dssp             ECCSSC-CCCCGGGGGCTTCSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CC
T ss_pred             EecCCC-cCCchhhccCCCCCEEEccCCcccccc-cccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCc-cC
Confidence            444441 1111  113444444444444311110 13444444455444444333111   3344445555554432 11


Q ss_pred             cc--cccccccceEeccccccce-eccccCCCcceEEEeccce---eeccccccccceeeeec
Q 015886          292 SV--RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS  348 (398)
Q Consensus       292 ~~--~~~~~~L~~L~l~~c~~~~-~~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~l~i~~~  348 (398)
                      .+  ...+++|++|++++|.... .....+++|+.|.+.++..   ..+...++|++++++.+
T Consensus       235 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          235 DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             CCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCC
Confidence            11  1133444444444443221 1123344444444444443   22334444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.50  E-value=2.2e-14  Score=142.96  Aligned_cols=213  Identities=17%  Similarity=0.127  Sum_probs=99.6

Q ss_pred             CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      ++++|+++.+.  ...+|..+..+++|++|+++++.+...  .....+++|+.|+++++.+........+..+++|+.|+
T Consensus       279 ~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          279 GLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             CCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            55555555432  224555555566666666666654432  23445566666666655432111111234556666666


Q ss_pred             eeecCCccee----ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccc--eeEeecCCCCCceEEeecc
Q 015886          193 IRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFL  262 (398)
Q Consensus       193 l~~~~~~~~~----~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~  262 (398)
                      +++|......    .+..+++|+.|++.+|. +..+.    ..+++|++|+++++....  ....+..+++|+.|+++++
T Consensus       357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             CCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             CCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            6655432211    23345666666666552 22221    134566666665554111  0112445556666666655


Q ss_pred             CCchHHHhhhhcCCCCCcEEeccCccccc------cccccccccceEeccccccce---eccccCCCcceEEEeccce
Q 015886          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLT------SVRISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI  331 (398)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~  331 (398)
                      .+.... ...+..+++|+.|+++++.-..      .....+++|++|++++|....   .....+++|+.|.++++..
T Consensus       436 ~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          436 LLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             CCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            543321 2223445566666665543211      011134555555555554321   1123344555555554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.50  E-value=1.8e-14  Score=147.36  Aligned_cols=233  Identities=18%  Similarity=0.129  Sum_probs=146.1

Q ss_pred             CCCeEEEEEecCCccccCCc--cccCCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHH--HHHhcCc
Q 015886          114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIA--SLISGCP  186 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~--~l~~~cp  186 (398)
                      ++++.|+++.+.. ...+|.  .+..+++|++|++++|.+...   .....+++|++|+|+++.++.....  ..+..++
T Consensus       100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            4677777765321 223444  566777788888877766433   1225677888888877776322221  2356778


Q ss_pred             cccEEEeeecCCcceeecCCCCCCceEEEecCCCccee--eecccCceEEEEeeeecc-ceeEeecCCCCCceEEeeccC
Q 015886          187 LIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRV--EIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLP  263 (398)
Q Consensus       187 ~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~--~~~~p~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~  263 (398)
                      +|++|++.+|..........+++|+.|++.+|.....+  ...+++|++|+++++... .....+..+++|+.|+++++.
T Consensus       179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  258 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ  258 (768)
T ss_dssp             TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred             CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence            88888887775444444456678888888777221111  225677888888777622 222345677888888887776


Q ss_pred             CchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccccccce---eccccCCCcceEEEeccce-----
Q 015886          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----  331 (398)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----  331 (398)
                      +......   ..+++|+.|++++|.....++.    .+++|++|++++|....   .....+++|+.|.+.++..     
T Consensus       259 l~~~~~~---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip  335 (768)
T 3rgz_A          259 FVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP  335 (768)
T ss_dssp             CEESCCC---CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccCccCc---cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence            6542111   1577888888888643323332    24788888888887542   3346677888888887765     


Q ss_pred             -eeccccccccceeeeeccc
Q 015886          332 -SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       332 -~~~~~~~~L~~l~i~~~~~  350 (398)
                       ..+.+.++|++++++.+..
T Consensus       336 ~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          336 MDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             HHHHTTCTTCCEEECCSSEE
T ss_pred             HHHHhcCCCCCEEeCcCCcc
Confidence             2366788888888866643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.49  E-value=2.6e-15  Score=149.16  Aligned_cols=192  Identities=17%  Similarity=0.118  Sum_probs=96.0

Q ss_pred             cCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee--cCCCCCCceEEEec----------CCCccee--
Q 015886          159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD--LVNLSNLKEIILVN----------TSDIKRV--  224 (398)
Q Consensus       159 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~--i~~~~~L~~L~l~~----------~~~l~~~--  224 (398)
                      .+++|++|+|++|.+++..+..++..||+|+.|++.++.....+.  ...+++|++|++.+          |..+...  
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~  370 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL  370 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence            345666666666655555555555666666666665321111110  12245666666663          4222211  


Q ss_pred             ---eecccCceEEEEeeee-ccceeEeec-CCCCCceEEee----ccCCch----HHHhhhhcCCCCCcEEeccCccc-c
Q 015886          225 ---EIKTSNVNALAIHQTY-LFPIEVNVS-SCGNLKCLKFD----FLPIED----EWLCNGISKLPLLEYLSMTKCHK-L  290 (398)
Q Consensus       225 ---~~~~p~L~~l~l~~~~-~~~~~~~~~-~~~~L~~L~l~----~~~~~~----~~~~~~~~~~~~L~~L~l~~c~~-~  290 (398)
                         ...+|+|++|++.... .......++ .+++|++|++.    .+.+++    ..+..++..+++|+.|+++.|.+ +
T Consensus       371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l  450 (592)
T 3ogk_B          371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL  450 (592)
T ss_dssp             HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred             HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence               1235666666663332 111111122 25666666664    233333    24445555566666666655432 1


Q ss_pred             c-----cccccccccceEeccccccce----eccccCCCcceEEEeccce------eeccccccccceeeeeccc
Q 015886          291 T-----SVRISSPCLKTLILECCDKLI----QVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       291 ~-----~~~~~~~~L~~L~l~~c~~~~----~~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~l~i~~~~~  350 (398)
                      +     .+...+++|++|++++|....    .+...+++|+.|+++++..      .+...+++|+.+.++.+..
T Consensus       451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred             cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence            1     122235666666666665321    2234556677777766653      3344566677777755543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.49  E-value=3e-13  Score=130.40  Aligned_cols=74  Identities=15%  Similarity=0.229  Sum_probs=44.3

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|+++.+..  ..++. +..+++|++|++++|.+...+....+++|+.|+++++.+.+-.  . +..+++|+.|.+
T Consensus        90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l  163 (466)
T 1o6v_A           90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSF  163 (466)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEE
T ss_pred             ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh--h-hccCCcccEeec
Confidence            4777777765322  23333 5667778888887776665544667777888888777763211  1 344444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.48  E-value=1.5e-13  Score=125.39  Aligned_cols=233  Identities=14%  Similarity=0.048  Sum_probs=145.5

Q ss_pred             CCCeEEEEEecCCc-cccCCccccCCCCeeEEEEec-cccCC--CCccccCcccceEEEEEEEeCHHHHHHHHhcCcccc
Q 015886          114 SEVKELVLVHWRSE-RRNLPEIIFYVESLHVLELSY-CKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (398)
Q Consensus       114 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~l~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  189 (398)
                      .++++|+++.+... ...+|..+..+++|++|++++ +.+..  +.....+++|++|+|+++.++... ...+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC-CHHHhCCCCCC
Confidence            36777777764322 125677777788888888884 55432  245667888888888888763111 12256678888


Q ss_pred             EEEeeecCCccee--ecCCCCCCceEEEecCCCcceee---eccc-CceEEEEeeeecc-ceeEeecCCCCCceEEeecc
Q 015886          190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTS-NVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFL  262 (398)
Q Consensus       190 ~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~---~~~p-~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~  262 (398)
                      .|++++|.....+  .+..+++|+.|++.++.-...++   ...+ +|+.|+++++... .....+..++ |+.|+++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            8888877543221  24456888888888773221222   1334 7888888877622 2222345555 888888877


Q ss_pred             CCchHHHhhhhcCCCCCcEEeccCcccccccc--ccccccceEeccccccce---eccccCCCcceEEEeccce----ee
Q 015886          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI----SF  333 (398)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~----~~  333 (398)
                      .+... ....+..+++|+.|+++++.....++  ..+++|++|+++++....   .....+++|+.|.++++..    ..
T Consensus       208 ~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            76543 23445678888888888864322222  245788888888877642   2345667888888877766    22


Q ss_pred             ccccccccceeeeecc
Q 015886          334 SSNALSLSETSLCFSS  349 (398)
Q Consensus       334 ~~~~~~L~~l~i~~~~  349 (398)
                      ..+.++|+.+.+..+.
T Consensus       287 ~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          287 GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             STTGGGSCGGGTCSSS
T ss_pred             CccccccChHHhcCCC
Confidence            2456677777775544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.48  E-value=6.3e-14  Score=127.39  Aligned_cols=233  Identities=18%  Similarity=0.174  Sum_probs=150.2

Q ss_pred             ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHH-HHHHHhcCccccEEEeeecCCcce-e
Q 015886          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLES-L  202 (398)
Q Consensus       127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~~~~~~~-~  202 (398)
                      ....+|..+.  ++|++|+++++.+...  ..+..+++|+.|+|+++.++... ....+..+++|+.|++++|....- -
T Consensus        18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~   95 (306)
T 2z66_A           18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS   95 (306)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE
T ss_pred             CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh
Confidence            3445555432  5788899988877644  23567889999999888764221 111234678999999988754321 1


Q ss_pred             ecCCCCCCceEEEecC--CCcce--eeecccCceEEEEeeeecc-ceeEeecCCCCCceEEeeccCCchHHHhhhhcCCC
Q 015886          203 DLVNLSNLKEIILVNT--SDIKR--VEIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP  277 (398)
Q Consensus       203 ~i~~~~~L~~L~l~~~--~~l~~--~~~~~p~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  277 (398)
                      .+..+++|++|++.++  .....  .....++|++|+++++... .....+..+++|+.|+++++.+........+..++
T Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            2445788999988887  11111  1235678899998877621 11123567889999999888776544455567788


Q ss_pred             CCcEEeccCccccccc-c---ccccccceEeccccccce---eccccCCCcceEEEeccce-----eecccc-cccccee
Q 015886          278 LLEYLSMTKCHKLTSV-R---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETS  344 (398)
Q Consensus       278 ~L~~L~l~~c~~~~~~-~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~l~  344 (398)
                      +|+.|+++++. ++.+ +   ..+++|++|+++++....   .....+++|+.|.++++..     ..+... ++|+.++
T Consensus       176 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          176 NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             CCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            99999998873 3333 2   256789999998887542   2335578899999888776     334445 4899999


Q ss_pred             eeecccc-hhhHHHHHHHH
Q 015886          345 LCFSSHL-MVNIEWVVEYF  362 (398)
Q Consensus       345 i~~~~~~-~~~~~~~~~~~  362 (398)
                      ++.+... .....|+.+..
T Consensus       255 L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          255 LTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             CTTCCEECSGGGHHHHHHH
T ss_pred             ccCCCeecccChHHHHHHH
Confidence            9766432 22344444433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.48  E-value=3e-14  Score=145.80  Aligned_cols=220  Identities=15%  Similarity=0.072  Sum_probs=141.7

Q ss_pred             ccCCccccCCCCeeEEEEeccccCC--CC--ccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-
Q 015886          129 RNLPEIIFYVESLHVLELSYCKLQQ--PS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD-  203 (398)
Q Consensus       129 ~~l~~~~~~~~~L~~L~L~~~~l~~--~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~-  203 (398)
                      ..+|..+..+++|++|+|++|.+..  +.  ....+++|++|+|+++.+.......++..+++|++|++++|....... 
T Consensus        90 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  169 (768)
T 3rgz_A           90 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV  169 (768)
T ss_dssp             EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred             CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence            3456677778888888888877642  22  566778888888887776322222223567888888888775432221 


Q ss_pred             ----cCCCCCCceEEEecCCCcceee-ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCC
Q 015886          204 ----LVNLSNLKEIILVNTSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL  278 (398)
Q Consensus       204 ----i~~~~~L~~L~l~~~~~l~~~~-~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  278 (398)
                          +..+++|++|++.+|....... ..+++|++|+++++........++.+++|++|+++++.+.... ...+..+++
T Consensus       170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~  248 (768)
T 3rgz_A          170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTE  248 (768)
T ss_dssp             HHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-HHHTTTCSS
T ss_pred             hhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-cHHHhcCCC
Confidence                4556788888888772111111 3567888888887763222223677888888888887776543 333567888


Q ss_pred             CcEEeccCccccccccc-cccccceEeccccccceec----cccCCCcceEEEeccce-----eeccccccccceeeeec
Q 015886          279 LEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS  348 (398)
Q Consensus       279 L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~~~~~----~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~  348 (398)
                      |+.|++++|.....++. .+++|++|++++|.....+    ...+++|+.|.+.++..     ..+.++++|+++++..+
T Consensus       249 L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN  328 (768)
T ss_dssp             CCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence            88888888743333222 5678888888887654222    22347888888877765     45667788888888665


Q ss_pred             c
Q 015886          349 S  349 (398)
Q Consensus       349 ~  349 (398)
                      .
T Consensus       329 ~  329 (768)
T 3rgz_A          329 N  329 (768)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=3.2e-13  Score=130.14  Aligned_cols=98  Identities=17%  Similarity=0.163  Sum_probs=45.5

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|+++.+...  .++ .+..+++|++|++.+. +........+++|+.|+++++.+.+-.   .+..+++|+.|++
T Consensus       134 ~~L~~L~l~~n~l~--~~~-~~~~l~~L~~L~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l  206 (466)
T 1o6v_A          134 TNLNRLELSSNTIS--DIS-ALSGLTSLQQLSFGNQ-VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIA  206 (466)
T ss_dssp             TTCSEEEEEEEEEC--CCG-GGTTCTTCSEEEEEES-CCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEEC
T ss_pred             CCCCEEECCCCccC--CCh-hhccCCcccEeecCCc-ccCchhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEe
Confidence            57888888774322  122 2444555555555432 221223445555555555555542211   1344555555555


Q ss_pred             eecCCcceeecCCCCCCceEEEecC
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNT  218 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~  218 (398)
                      .+|.......+..+++|+.|.+.+|
T Consensus       207 ~~n~l~~~~~~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          207 TNNQISDITPLGILTNLDELSLNGN  231 (466)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCCcccccccccccCCCCEEECCCC
Confidence            5543322222233344555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.48  E-value=3.8e-14  Score=141.25  Aligned_cols=208  Identities=16%  Similarity=0.169  Sum_probs=103.7

Q ss_pred             cCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886          136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (398)
Q Consensus       136 ~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l  215 (398)
                      ..+++|+.|++.++.+...+....+++|++|++++|.++  .+..+  .++.|+.|++.+|.......+..+++|+.|++
T Consensus       282 ~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  357 (606)
T 3vq2_A          282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDL  357 (606)
T ss_dssp             GGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEEC
T ss_pred             ccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEEC
Confidence            334556666666655543344445556666666665551  11121  55566666666554444444444455555555


Q ss_pred             ecCCCccee---e---ecccCceEEEEeeeeccceeEe-------------------------ecCCCCCceEEeeccCC
Q 015886          216 VNTSDIKRV---E---IKTSNVNALAIHQTYLFPIEVN-------------------------VSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       216 ~~~~~l~~~---~---~~~p~L~~l~l~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~~  264 (398)
                      ++| .+..+   .   ..+++|++|+++++........                         +..+++|+.|+++++.+
T Consensus       358 s~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          358 SRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             cCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            554 11111   0   1334455555444431111122                         34455555555555544


Q ss_pred             chHHHhhhhcCCCCCcEEeccCcccccc-cc---ccccccceEeccccccce---eccccCCCcceEEEeccce-----e
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTS-VR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----S  332 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~-~~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~  332 (398)
                      .... ...+..+++|+.|++++|..... ++   ..+++|+.|++++|....   .....+++|+.|.++++..     .
T Consensus       437 ~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  515 (606)
T 3vq2_A          437 KIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS  515 (606)
T ss_dssp             EECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred             Cccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence            3321 12244556666666666532221 11   245667777777765432   2234566777777777655     3


Q ss_pred             eccccccccceeeeecc
Q 015886          333 FSSNALSLSETSLCFSS  349 (398)
Q Consensus       333 ~~~~~~~L~~l~i~~~~  349 (398)
                      .+.++++|++++++.+.
T Consensus       516 ~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          516 HYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             GTTTCTTCCEEECTTSC
T ss_pred             HccCCCcCCEEECCCCc
Confidence            45566777777775554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.48  E-value=1.2e-13  Score=132.74  Aligned_cols=120  Identities=19%  Similarity=0.142  Sum_probs=82.7

Q ss_pred             cCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceE
Q 015886          229 SNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTL  303 (398)
Q Consensus       229 p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L  303 (398)
                      ++|+.++++++.... ....++.+++|+.|+++++.+.... ...+..+++|+.|+++++. ++.+.    ..+++|++|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEE
Confidence            355556555554111 1123567788999999888776532 2235678899999999873 33332    257899999


Q ss_pred             eccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeeccc
Q 015886          304 ILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       304 ~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~  350 (398)
                      ++++|....   .....+++|+.|.+.++..     .++..+++|++++++.+..
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            999987642   2345678999999999877     4567889999999977753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.47  E-value=8.5e-14  Score=138.69  Aligned_cols=235  Identities=19%  Similarity=0.160  Sum_probs=169.3

Q ss_pred             CCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          115 EVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      +++++++..+  ....++.. +..+++|++|+++++.+... .....+++|++|+++++.+..... ..+..+|+|+.|+
T Consensus       255 ~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKH--YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTTC--CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEE
T ss_pred             ceeEEEeecC--ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEE
Confidence            3444444432  23344443 56689999999999987644 556788999999999998743221 2367899999999


Q ss_pred             eeecCCccee---ecCCCCCCceEEEecCCCcceee------ecccCceEEEEeeeeccce-eEeecCCCCCceEEeecc
Q 015886          193 IRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL  262 (398)
Q Consensus       193 l~~~~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~------~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~  262 (398)
                      +.+|.....+   .+..+++|+.|++.++. +..+.      ..+++|++|+++++..... ...+..+++|+.|+++++
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            9998654333   24567999999999983 33332      2678999999998862221 224678899999999998


Q ss_pred             CCchHHHhhhhcCCCCCcEEeccCcccccccc---ccccccceEeccccccce------eccccCCCcceEEEeccce--
Q 015886          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI------QVEIETPNLSIFKYHGDLI--  331 (398)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~~------~~~~~~p~L~~l~~~~~~~--  331 (398)
                      .+........+..+++|+.|++++|......+   ..+++|++|++++|....      .....+++|+.|.++++..  
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            87654444556789999999999984332222   357899999999997642      2356788999999999877  


Q ss_pred             ---eeccccccccceeeeecccchh
Q 015886          332 ---SFSSNALSLSETSLCFSSHLMV  353 (398)
Q Consensus       332 ---~~~~~~~~L~~l~i~~~~~~~~  353 (398)
                         ..+.++++|++++++.+.....
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~  515 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSS  515 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred             cChhhhccccCCCEEECCCCccCcC
Confidence               4567889999999977754433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=3.5e-15  Score=137.52  Aligned_cols=193  Identities=18%  Similarity=0.253  Sum_probs=141.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEE-EeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREV-CADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~  190 (398)
                      +++++|+++.+......++..+..+++|++|++++|.+...  .....+++|++|++++| .+++..+..++..||+|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            58999988875433334677778899999999999976533  34556999999999999 5688888888999999999


Q ss_pred             EEeeecCCccee----ecCCCC-CCceEEEecCC-Ccc-----eeeecccCceEEEEeeeec--cceeEeecCCCCCceE
Q 015886          191 LEIRSCEGLESL----DLVNLS-NLKEIILVNTS-DIK-----RVEIKTSNVNALAIHQTYL--FPIEVNVSSCGNLKCL  257 (398)
Q Consensus       191 L~l~~~~~~~~~----~i~~~~-~L~~L~l~~~~-~l~-----~~~~~~p~L~~l~l~~~~~--~~~~~~~~~~~~L~~L  257 (398)
                      |++.+|..+...    .+..++ +|++|++.+|. .+.     .....+|+|++|+++++..  ......+..+++|++|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            999999555422    134468 99999999983 222     2223789999999998872  2223356788999999


Q ss_pred             Eeecc-CCchHHHhhhhcCCCCCcEEeccCcccccc--ccccccccceEeccccc
Q 015886          258 KFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VRISSPCLKTLILECCD  309 (398)
Q Consensus       258 ~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~--~~~~~~~L~~L~l~~c~  309 (398)
                      +++++ .+.+..+.. +..+++|+.|++++|  +..  +..-...++.|+++++.
T Consensus       253 ~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          253 SLSRCYDIIPETLLE-LGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             ECTTCTTCCGGGGGG-GGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESCCC
T ss_pred             eCCCCCCCCHHHHHH-HhcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEeccc
Confidence            99988 455554433 567999999999998  332  22222457777776544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.45  E-value=9.5e-14  Score=138.35  Aligned_cols=223  Identities=17%  Similarity=0.084  Sum_probs=138.7

Q ss_pred             CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHH-HHHHHHhcCccccEEEeeecCCcce-eecCCCCCCceEE
Q 015886          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ-AIASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEII  214 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~~~~~~~-~~i~~~~~L~~L~  214 (398)
                      .+++|++|+++++..........+++|+.|+++++.++.. .+...+..++.|+.|++.+|..... -.+..+++|+.|.
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD  405 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence            3444444444444221112334555666666665554211 1122345677777777776642211 1244567888888


Q ss_pred             EecCC--Ccc--eeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccc
Q 015886          215 LVNTS--DIK--RVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK  289 (398)
Q Consensus       215 l~~~~--~l~--~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  289 (398)
                      +.+|.  ...  .....+++|+.|+++++.... ....++.+++|+.|+++++.+.+..+...+..+++|+.|++++|..
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  485 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL  485 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence            88771  111  112256888999988876221 1224678899999999998877654555677899999999999843


Q ss_pred             ccccc---ccccccceEeccccccce---eccccCCCcceEEEeccce----eeccccc-cccceeeeecccch-hhHHH
Q 015886          290 LTSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI----SFSSNAL-SLSETSLCFSSHLM-VNIEW  357 (398)
Q Consensus       290 ~~~~~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~----~~~~~~~-~L~~l~i~~~~~~~-~~~~~  357 (398)
                      ....+   ..+++|++|++++|....   .....+++|+.|.++++..    ..+...+ +|+.+++..+...+ ....|
T Consensus       486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~  565 (606)
T 3vq2_A          486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK  565 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred             CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence            32222   267899999999997653   2346678999999999887    3355554 69999997765332 34445


Q ss_pred             HH
Q 015886          358 VV  359 (398)
Q Consensus       358 ~~  359 (398)
                      +.
T Consensus       566 ~~  567 (606)
T 3vq2_A          566 FL  567 (606)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.45  E-value=1e-13  Score=126.75  Aligned_cols=206  Identities=17%  Similarity=0.105  Sum_probs=98.0

Q ss_pred             CCeEEEEEecCCccccCC-ccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          115 EVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      ++++|+++.+..  ..++ ..+..+++|++|+++++.+........+++|++|+++++.++.      +..++.|+.|++
T Consensus        35 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l  106 (317)
T 3o53_A           35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA  106 (317)
T ss_dssp             GCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred             CCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEEC
Confidence            677776665322  2233 3445567777777777665433335556666666666665521      113356666666


Q ss_pred             eecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhh
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  272 (398)
                      ++|.. ..+....+++|+.|.+.++                     .... ....+..+++|+.|+++++.+.......+
T Consensus       107 ~~n~l-~~~~~~~~~~L~~L~l~~N---------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A          107 ANNNI-SRVSCSRGQGKKNIYLANN---------------------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             CSSCC-SEEEECCCSSCEEEECCSS---------------------CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             CCCcc-CCcCccccCCCCEEECCCC---------------------CCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            55432 2222223455555555554                     3111 01123344445555554444443322333


Q ss_pred             hcCCCCCcEEeccCccccccccc--cccccceEeccccccce--eccccCCCcceEEEeccce----eecccccccccee
Q 015886          273 ISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLSETS  344 (398)
Q Consensus       273 ~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~  344 (398)
                      ...+++|+.|+++++. ++.+..  .+++|++|++++|....  ......++|+.|.++++..    ..+...++|+.++
T Consensus       165 ~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          165 AASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD  243 (317)
T ss_dssp             GGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred             hhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEE
Confidence            3344455555555432 111111  24445555555444321  1123344555555555444    2345667888888


Q ss_pred             eeecccc
Q 015886          345 LCFSSHL  351 (398)
Q Consensus       345 i~~~~~~  351 (398)
                      ++.+...
T Consensus       244 l~~N~~~  250 (317)
T 3o53_A          244 LRGNGFH  250 (317)
T ss_dssp             CTTCCCB
T ss_pred             ccCCCcc
Confidence            8666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=1.2e-13  Score=133.49  Aligned_cols=219  Identities=16%  Similarity=0.134  Sum_probs=121.7

Q ss_pred             CCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCce
Q 015886          137 YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKE  212 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~  212 (398)
                      .+++|++|+++++.+...  ..+..+++|+.|+|+++.+..... ..+..+++|++|++.+|.....  -.+..+++|+.
T Consensus       102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred             CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence            345555555555443221  233445555555555443311100 1133455555555555432111  11333456666


Q ss_pred             EEEecCCCcceee----ecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          213 IILVNTSDIKRVE----IKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       213 L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      |++.++ .+..+.    ..+++|++|+++++.... .........+|+.|+++++.+.... ...+..+++|+.|+++++
T Consensus       181 L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          181 LRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             EEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHHHTTCTTCCEEECCSS
T ss_pred             EeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHHhcCccccCeeECCCC
Confidence            666555 111111    144566666666554111 1111223347888888877765422 234567899999999997


Q ss_pred             cccccccc----cccccceEeccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeecccc-hhh
Q 015886          288 HKLTSVRI----SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHL-MVN  354 (398)
Q Consensus       288 ~~~~~~~~----~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~~-~~~  354 (398)
                      . ++.+..    .+++|+.|+++++....   .....+++|+.|.++++..     ..+.++++|+++.+..+.-. ...
T Consensus       259 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          259 P-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             C-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             c-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            4 333332    56899999999887642   2345678999999999876     45678899999999776422 234


Q ss_pred             HHHHH
Q 015886          355 IEWVV  359 (398)
Q Consensus       355 ~~~~~  359 (398)
                      ..|+.
T Consensus       338 ~~~~~  342 (477)
T 2id5_A          338 LLWVF  342 (477)
T ss_dssp             GHHHH
T ss_pred             hHhHH
Confidence            45543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=132.89  Aligned_cols=233  Identities=18%  Similarity=0.093  Sum_probs=152.9

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  191 (398)
                      +++++|+++.+.. ....|..+..+++|++|+|+++.+...  ..+..+++|++|+|+++.+.... ...+..+++|+.|
T Consensus        56 ~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L  133 (477)
T 2id5_A           56 PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSL  133 (477)
T ss_dssp             TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEE
Confidence            4788887765322 112244566778888888888776544  23567788888888877663211 1224677888888


Q ss_pred             EeeecCCcce--eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCC
Q 015886          192 EIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       192 ~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  264 (398)
                      ++.++.....  -.+..+++|+.|++.+| .+..+.    ..+++|+.|+++++..... ...+..+++|+.|+++++..
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            8887643221  13445688888888887 233332    2567888888887762211 12467788888888887654


Q ss_pred             chHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccce---eccccCCCcceEEEeccce-----e
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----S  332 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~  332 (398)
                      ........ ....+|+.|++++| .++.++    ..+++|+.|+++++....   .....+++|+.|.+.++..     .
T Consensus       213 ~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          213 LDTMTPNC-LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             CCEECTTT-TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred             ccccCccc-ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence            43222222 22358999999887 344444    257899999999887542   2346678999999998876     4


Q ss_pred             eccccccccceeeeecccc
Q 015886          333 FSSNALSLSETSLCFSSHL  351 (398)
Q Consensus       333 ~~~~~~~L~~l~i~~~~~~  351 (398)
                      .+.++++|++++++.+...
T Consensus       291 ~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          291 AFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             TBTTCTTCCEEECCSSCCS
T ss_pred             HhcCcccCCEEECCCCcCc
Confidence            5678899999999777543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.44  E-value=2.2e-13  Score=135.26  Aligned_cols=97  Identities=19%  Similarity=0.279  Sum_probs=59.3

Q ss_pred             CCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccc---cccccccccccceEeccc--------cccce-----e
Q 015886          250 SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK---LTSVRISSPCLKTLILEC--------CDKLI-----Q  313 (398)
Q Consensus       250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~---~~~~~~~~~~L~~L~l~~--------c~~~~-----~  313 (398)
                      .+++|++|+++++.+.+..+..++..+++|+.|++.+|..   +..+...+++|++|++.+        |..+.     .
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            4678888888888887777777778888888888888722   112222467888888843        33331     1


Q ss_pred             ccccCCCcceEEEeccce------eeccccccccceeee
Q 015886          314 VEIETPNLSIFKYHGDLI------SFSSNALSLSETSLC  346 (398)
Q Consensus       314 ~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~l~i~  346 (398)
                      +...+|+|+.|.+.+...      .+..++++|+++.+.
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            123356666664443333      222345566666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.43  E-value=5.3e-13  Score=128.03  Aligned_cols=219  Identities=15%  Similarity=0.114  Sum_probs=131.0

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      ++++.|+++.+....  ++  +..+++|++|+++++.+...+ ...+++|++|+++++.++.-.    +..+++|+.|++
T Consensus        64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec----CCCCCcCCEEEC
Confidence            466666666543222  22  445666777777776655432 556667777777766663311    456677777777


Q ss_pred             eecCCcceeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhh
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  272 (398)
                      .+|.. ..+.+..+++|+.|.+.+|..+..+.+ .+++|+.|+++++.....  .++.+++|+.|+++++.+....    
T Consensus       135 ~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~l~~l~~L~~L~l~~N~l~~~~----  207 (457)
T 3bz5_A          135 ARNTL-TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKLD----  207 (457)
T ss_dssp             TTSCC-SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--CCTTCTTCCEEECCSSCCSCCC----
T ss_pred             CCCcc-ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--ccccCCCCCEEECcCCcCCeec----
Confidence            66533 224455567777777777644444433 567777887777763322  2677778888888877766531    


Q ss_pred             hcCCCCCcEEeccCccccccccc-cccccceEeccccccceeccccCCCcceEEEec----------cce---eeccccc
Q 015886          273 ISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIETPNLSIFKYHG----------DLI---SFSSNAL  338 (398)
Q Consensus       273 ~~~~~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~----------~~~---~~~~~~~  338 (398)
                      +..+++|+.|+++++ .++.++. .+++|+.|+++++..-..-...+++|+.+.+.+          +..   ....+++
T Consensus       208 l~~l~~L~~L~Ls~N-~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~  286 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR  286 (457)
T ss_dssp             CTTCTTCSEEECCSS-CCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred             cccCCCCCEEECcCC-cccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence            556788888888886 3333443 567888888887765322223445555444333          222   2334567


Q ss_pred             cccceeeeecc
Q 015886          339 SLSETSLCFSS  349 (398)
Q Consensus       339 ~L~~l~i~~~~  349 (398)
                      +|+.++++.+.
T Consensus       287 ~L~~L~Ls~n~  297 (457)
T 3bz5_A          287 KIKELDVTHNT  297 (457)
T ss_dssp             TCCCCCCTTCT
T ss_pred             cCCEEECCCCc
Confidence            88888885553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.43  E-value=6.9e-13  Score=123.05  Aligned_cols=232  Identities=14%  Similarity=0.101  Sum_probs=165.9

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      +++++|+++.+..  ..++. .+..+++|++|+++++.+...  .....+++|++|+|+++.++.-. ...+..+++|+.
T Consensus        52 ~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence            4889998876432  34554 567789999999999977543  45778899999999999884322 233678999999


Q ss_pred             EEeeecCCcce---eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccce-eEeecCCCCCceEEeecc
Q 015886          191 LEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL  262 (398)
Q Consensus       191 L~l~~~~~~~~---~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~  262 (398)
                      |+++++....-   -.+..+++|+.|++.+|..+..+.    ..+++|++|+++++..... ...+..+++|++|+++++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            99998854321   134567999999999985555553    2578999999998862221 234678899999999998


Q ss_pred             CCchHHHhhhhcCCCCCcEEeccCccccccccc-------cccccceEeccccccce-------eccccCCCcceEEEec
Q 015886          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-------SSPCLKTLILECCDKLI-------QVEIETPNLSIFKYHG  328 (398)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-------~~~~L~~L~l~~c~~~~-------~~~~~~p~L~~l~~~~  328 (398)
                      .+... ...+...+++|+.|+++++. ++.+..       ..+.++.+++.++....       .....+++|+.|.+++
T Consensus       209 ~l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~  286 (353)
T 2z80_A          209 QHILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR  286 (353)
T ss_dssp             CSTTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred             ccccc-hhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence            87543 23345568999999999973 222221       24556777776665421       2235678999999999


Q ss_pred             cce-----eeccccccccceeeeeccc
Q 015886          329 DLI-----SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       329 ~~~-----~~~~~~~~L~~l~i~~~~~  350 (398)
                      +..     .++.+.++|++++++.+..
T Consensus       287 N~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          287 NQLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            877     4457889999999977753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.43  E-value=6.1e-13  Score=127.65  Aligned_cols=240  Identities=14%  Similarity=0.097  Sum_probs=171.2

Q ss_pred             CCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcc
Q 015886           83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFS  162 (398)
Q Consensus        83 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~  162 (398)
                      ..++.+.++.....   .   +    .....+++++|+++.+....  ++  +..+++|++|+++++.+... ....+++
T Consensus        64 ~~L~~L~Ls~n~l~---~---~----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~  128 (457)
T 3bz5_A           64 TGLTKLICTSNNIT---T---L----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKL-DVSQNPL  128 (457)
T ss_dssp             TTCSEEECCSSCCS---C---C----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSCC-CCTTCTT
T ss_pred             CCCCEEEccCCcCC---e---E----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCee-cCCCCCc
Confidence            46777776644321   1   1    11223589999998754333  33  66789999999999988654 3778899


Q ss_pred             cceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeec
Q 015886          163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYL  241 (398)
Q Consensus       163 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~  241 (398)
                      |+.|+++++.++.-.    +..++.|+.|++++|.....+.+..+++|+.|++++| .+..+.+ .+++|+.|+++++..
T Consensus       129 L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          129 LTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             CCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCcC
Confidence            999999999884422    6789999999999998777777778899999999998 3333443 678999999998873


Q ss_pred             cceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-ccc----------ccceEecccccc
Q 015886          242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSP----------CLKTLILECCDK  310 (398)
Q Consensus       242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~----------~L~~L~l~~c~~  310 (398)
                      ...  .++.+++|+.|+++++.+...  .  +..+++|+.|+++++. ++.++. .++          +|+.|++++|..
T Consensus       204 ~~~--~l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~  276 (457)
T 3bz5_A          204 TKL--DLNQNIQLTFLDCSSNKLTEI--D--VTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ  276 (457)
T ss_dssp             SCC--CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred             Cee--ccccCCCCCEEECcCCccccc--C--ccccCCCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence            332  578899999999999988762  2  6678999999999963 333332 334          455666676665


Q ss_pred             ceecc-ccCCCcceEEEeccce--e-----------eccccccccceeeeecc
Q 015886          311 LIQVE-IETPNLSIFKYHGDLI--S-----------FSSNALSLSETSLCFSS  349 (398)
Q Consensus       311 ~~~~~-~~~p~L~~l~~~~~~~--~-----------~~~~~~~L~~l~i~~~~  349 (398)
                      ...+. ..+++|+.|.++++..  .           -+.+.++|+++.++.+.
T Consensus       277 ~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~  329 (457)
T 3bz5_A          277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE  329 (457)
T ss_dssp             CCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred             CCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence            54333 4568999999988764  1           23445667777765543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.42  E-value=7.9e-13  Score=130.62  Aligned_cols=227  Identities=17%  Similarity=0.138  Sum_probs=147.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|++..+.  ...+|..+..+ +|++|++.+|.+...+. ..+++|+.|++.++......-   ...+|+|+.|++
T Consensus       282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l  354 (570)
T 2z63_A          282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDL  354 (570)
T ss_dssp             TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEEC
T ss_pred             CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCccccccc---cccCCCCCEEeC
Confidence            356666665432  22455555555 67777777766653222 467777777777766521110   156778888888


Q ss_pred             eecCCcce----eecCCCCCCceEEEecCCCccee---eecccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCC
Q 015886          194 RSCEGLES----LDLVNLSNLKEIILVNTSDIKRV---EIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       194 ~~~~~~~~----~~i~~~~~L~~L~l~~~~~l~~~---~~~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~  264 (398)
                      ++|.....    ..+..+++|+.|++.+|. +..+   ...+++|++|+++++.....  ...+..+++|+.|+++++.+
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  433 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT  433 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred             cCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence            77654321    123456788888888772 2222   23677888888887762211  12457788899999988776


Q ss_pred             chHHHhhhhcCCCCCcEEeccCcccc-cccc---ccccccceEecccccccee---ccccCCCcceEEEeccce-----e
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKL-TSVR---ISSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI-----S  332 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~-~~~~---~~~~~L~~L~l~~c~~~~~---~~~~~p~L~~l~~~~~~~-----~  332 (398)
                      .... ...+..+++|+.|++++|... ..++   ..+++|+.|++++|.....   ....+++|+.|.+.++..     .
T Consensus       434 ~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          434 RVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             EECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            5432 334567899999999997532 1232   3578999999999876532   335678999999998876     4


Q ss_pred             eccccccccceeeeecc
Q 015886          333 FSSNALSLSETSLCFSS  349 (398)
Q Consensus       333 ~~~~~~~L~~l~i~~~~  349 (398)
                      .+.++++|++++++.+.
T Consensus       513 ~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          513 IFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTTTCTTCCEEECCSSC
T ss_pred             HhhcccCCcEEEecCCc
Confidence            56788999999997764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.42  E-value=9.7e-13  Score=123.76  Aligned_cols=230  Identities=17%  Similarity=0.146  Sum_probs=142.4

Q ss_pred             CCCeEEEEEecCCccccCC-ccccCCCCeeEEEEeccccCCCC--ccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      +++++|+++.+.  ...++ ..+..+++|++|+++++.+...+  .+..+++|++|+++++.+.... ...+..+++|+.
T Consensus        93 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  169 (390)
T 3o6n_A           93 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN  169 (390)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCE
T ss_pred             CCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCE
Confidence            477777777533  22333 33556778888888887765442  2456778888888777663211 112456778888


Q ss_pred             EEeeecCCcceeecCCCCCCceEEEecCC------------------Ccceeee-cccCceEEEEeeeeccceeEeecCC
Q 015886          191 LEIRSCEGLESLDLVNLSNLKEIILVNTS------------------DIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSC  251 (398)
Q Consensus       191 L~l~~~~~~~~~~i~~~~~L~~L~l~~~~------------------~l~~~~~-~~p~L~~l~l~~~~~~~~~~~~~~~  251 (398)
                      |++.++.. ..+.+..+++|+.|++.++.                  .+..+.. ..++|+.|+++++..... ..+..+
T Consensus       170 L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l  247 (390)
T 3o6n_A          170 LQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNY  247 (390)
T ss_dssp             EECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGC
T ss_pred             EECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCC
Confidence            88877643 22233334555555544430                  1222211 235677777776652221 245678


Q ss_pred             CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce--eccccCCCcceEEE
Q 015886          252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLSIFKY  326 (398)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~~  326 (398)
                      ++|++|+++++.+.... ...+..+++|+.|+++++ .++.++.   .+++|++|++++|....  .....+++|+.|.+
T Consensus       248 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL  325 (390)
T ss_dssp             TTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEEC
T ss_pred             CCccEEECCCCcCCCcC-hhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEEC
Confidence            88888888888776532 233566788888888886 3333333   56889999998886531  22345678999999


Q ss_pred             eccce--eeccccccccceeeeeccc
Q 015886          327 HGDLI--SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       327 ~~~~~--~~~~~~~~L~~l~i~~~~~  350 (398)
                      .++..  .-+...++|+++++..+..
T Consensus       326 ~~N~i~~~~~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          326 DHNSIVTLKLSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             CCCccceeCchhhccCCEEEcCCCCc
Confidence            88877  5567788999999976653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=3.1e-13  Score=134.34  Aligned_cols=100  Identities=18%  Similarity=0.185  Sum_probs=63.0

Q ss_pred             ecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce--eccccCCCcc
Q 015886          248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLS  322 (398)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~--~~~~~~p~L~  322 (398)
                      +..+++|+.|+++++.+.... ...+..+++|+.|+++++ .+..++.   .+++|+.|++++|....  .....+++|+
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~  327 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE  327 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred             hccCCCCCEEECCCCccCCCC-HHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence            456677777777777665432 223456777777777775 2333332   46778888887776531  1224567778


Q ss_pred             eEEEeccce--eeccccccccceeeeecc
Q 015886          323 IFKYHGDLI--SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       323 ~l~~~~~~~--~~~~~~~~L~~l~i~~~~  349 (398)
                      .|.+.++..  .-+...++|+.++++.+.
T Consensus       328 ~L~L~~N~l~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          328 NLYLDHNSIVTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred             EEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence            887777766  445667788888886554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.41  E-value=2.9e-12  Score=126.97  Aligned_cols=217  Identities=16%  Similarity=0.051  Sum_probs=130.5

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      ++++.|+++.+..  ..+|.   .+++|++|+|++|.+...+.  .+++|+.|+|++|.++.     +-...++|+.|++
T Consensus        61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEEC
T ss_pred             CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEEC
Confidence            5778887776432  24554   35778888888877654322  67788888888776632     1114577777777


Q ss_pred             eecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeecccee----------------Eee-cCCCCCce
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE----------------VNV-SSCGNLKC  256 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~----------------~~~-~~~~~L~~  256 (398)
                      .+|.. ..+... +++|++|++++| .+..+....++|+.|+++++......                ..+ ...++|+.
T Consensus       129 ~~N~l-~~lp~~-l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~  205 (622)
T 3g06_A          129 FGNQL-TSLPVL-PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYK  205 (622)
T ss_dssp             CSSCC-SCCCCC-CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             CCCCC-CcCCCC-CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhE
Confidence            76642 222221 366777777766 22223223344444444443311110                000 12345555


Q ss_pred             EEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccccccccceEeccccccceeccccCCCcceEEEeccce----e
Q 015886          257 LKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----S  332 (398)
Q Consensus       257 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~~~----~  332 (398)
                      |+++++.+..     +...+++|+.|+++++ .++.++..+++|++|+++++. +..+....++|+.|.++++..    .
T Consensus       206 L~L~~N~l~~-----l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~lp~  278 (622)
T 3g06_A          206 LWAYNNRLTS-----LPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPE  278 (622)
T ss_dssp             EECCSSCCSS-----CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCSCCG
T ss_pred             EECcCCcccc-----cCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCcCCH
Confidence            5555444432     2233477888888876 556666677888999988874 334555778899999998877    4


Q ss_pred             eccccccccceeeeecccch
Q 015886          333 FSSNALSLSETSLCFSSHLM  352 (398)
Q Consensus       333 ~~~~~~~L~~l~i~~~~~~~  352 (398)
                      .+.+.++|+.++++.+....
T Consensus       279 ~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             GGGGSCTTCEEECCSCCCCH
T ss_pred             HHhhccccCEEEecCCCCCC
Confidence            57788999999997776433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.41  E-value=5.1e-13  Score=131.99  Aligned_cols=230  Identities=13%  Similarity=0.123  Sum_probs=168.1

Q ss_pred             CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      .++.+.+..........+..+..+++|+.|++.++.+... .....+ +|+.|+++++.+..  +.  ...++.|+.|++
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l  332 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTF  332 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEE
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeC
Confidence            4566666553333445566677789999999999877644 445556 99999999998741  11  147899999999


Q ss_pred             eecCCcceeecCCCCCCceEEEecCCCcceee------ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchH
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE  267 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~------~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  267 (398)
                      .++..........+++|+.|++.+|. +..+.      ..+++|++|+++++........+..+++|++|+++++.+...
T Consensus       333 ~~n~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          333 TSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             ESCBSCCBCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred             cCCccccccccccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence            99876655555667999999999883 33221      267899999999887433344478899999999998877654


Q ss_pred             HHhhhhcCCCCCcEEeccCcccccccc---ccccccceEeccccccc----eeccccCCCcceEEEeccce-----eecc
Q 015886          268 WLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKL----IQVEIETPNLSIFKYHGDLI-----SFSS  335 (398)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~----~~~~~~~p~L~~l~~~~~~~-----~~~~  335 (398)
                      .....+..+++|+.|++++|......+   ..+++|++|++++|...    ......+++|+.|.+.++..     ..+.
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence            333456788999999999985433322   35789999999999754    23446778999999999877     4567


Q ss_pred             ccccccceeeeeccc
Q 015886          336 NALSLSETSLCFSSH  350 (398)
Q Consensus       336 ~~~~L~~l~i~~~~~  350 (398)
                      ++++|++++++.+..
T Consensus       492 ~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          492 SLSSLQVLNMASNQL  506 (570)
T ss_dssp             TCTTCCEEECCSSCC
T ss_pred             cccCCCEEeCCCCcC
Confidence            789999999976643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.41  E-value=3.4e-13  Score=130.55  Aligned_cols=204  Identities=12%  Similarity=0.068  Sum_probs=93.0

Q ss_pred             CeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEec
Q 015886          140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN  217 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~  217 (398)
                      +|++|+|+++.+...  ..+..+++|+.|+|++|.++...  . +..+++|+.|++++|. +..+.  ..++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECcC
Confidence            444444444444322  22334444444444444331100  0 3344555555554442 11111  124555555555


Q ss_pred             CCCcceeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-
Q 015886          218 TSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-  295 (398)
Q Consensus       218 ~~~l~~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-  295 (398)
                      |.-........++|+.|+++++.... ....++.+++|+.|+++++.+.......+...+++|+.|+++++. ++.++. 
T Consensus       109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~  187 (487)
T 3oja_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ  187 (487)
T ss_dssp             SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC
T ss_pred             CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc
Confidence            42111111234555555555554111 122344556666666665555543333333345666666666642 222221 


Q ss_pred             -cccccceEeccccccce--eccccCCCcceEEEeccce----eeccccccccceeeeeccc
Q 015886          296 -SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       296 -~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i~~~~~  350 (398)
                       .+++|+.|+++++....  .-...+++|+.|.++++..    ..+...++|+.+++..+..
T Consensus       188 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence             34566666666554431  1123445666666666554    3344567777777765543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.41  E-value=1.1e-12  Score=125.39  Aligned_cols=216  Identities=18%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             CCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEE
Q 015886          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEII  214 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~  214 (398)
                      ++++.|+|+++.+...  ..+..+++|++|+|+++.+..-.. ..+..+++|+.|++++|....-  -.+..+++|+.|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            4556666666554322  344555666666666555421111 1134556666666665532211  1133345666666


Q ss_pred             EecCCCcceee----ecccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886          215 LVNTSDIKRVE----IKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (398)
Q Consensus       215 l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (398)
                      +.++ .+..+.    ..+++|+.|+++++.....  ...+..+++|+.|+++++.+...  .. +..+++|+.|+++++ 
T Consensus       143 L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N-  217 (440)
T 3zyj_A          143 LRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKLDELDLSGN-  217 (440)
T ss_dssp             CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CC-CTTCSSCCEEECTTS-
T ss_pred             CCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cc-cCCCcccCEEECCCC-
Confidence            6655 222222    1345666666655331110  01244566666666666555431  11 345566666666665 


Q ss_pred             cccccc----ccccccceEeccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeecc-cchhhH
Q 015886          289 KLTSVR----ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS-HLMVNI  355 (398)
Q Consensus       289 ~~~~~~----~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~-~~~~~~  355 (398)
                      .++.+.    ..+++|++|+++++....   .....+++|+.|.++++..     ..+...++|+.++++.+. .-....
T Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            222221    144566666666655431   1224456666666666555     344556777777775553 122344


Q ss_pred             HHHHH
Q 015886          356 EWVVE  360 (398)
Q Consensus       356 ~~~~~  360 (398)
                      .|+..
T Consensus       298 ~~l~~  302 (440)
T 3zyj_A          298 LWLSW  302 (440)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            55544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.40  E-value=1.5e-12  Score=122.53  Aligned_cols=231  Identities=12%  Similarity=0.094  Sum_probs=154.9

Q ss_pred             hCCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCcccc
Q 015886          113 ESEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  189 (398)
                      .+++++|+++.+..  ..++. .+..+++|++|+++++.+...  .....+++|++|+|+++.+..- ...++..+++|+
T Consensus        68 l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~  144 (390)
T 3o6n_A           68 FRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLT  144 (390)
T ss_dssp             CCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             cccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCc
Confidence            46999999876432  34443 566789999999999987654  3467899999999999987421 112356789999


Q ss_pred             EEEeeecCCcce--eecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeeccce-----------------eEeec
Q 015886          190 YLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-----------------EVNVS  249 (398)
Q Consensus       190 ~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~-----------------~~~~~  249 (398)
                      .|++++|.....  -.+..+++|+.|++.++ .+..+.. ..++|+.++++++.....                 .....
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~  223 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  223 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence            999998854322  12556799999999988 2333332 455666666554431100                 01123


Q ss_pred             CCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc---ccccccceEeccccccce--eccccCCCcceE
Q 015886          250 SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI--QVEIETPNLSIF  324 (398)
Q Consensus       250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l  324 (398)
                      ..++|+.|+++++.+.+.   ..+..+++|+.|+++++......+   ..+++|++|+++++....  ......|+|+.|
T Consensus       224 ~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L  300 (390)
T 3o6n_A          224 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL  300 (390)
T ss_dssp             CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEE
T ss_pred             ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEE
Confidence            346788888888777653   346678889999998873222212   256788999998876542  223457889998


Q ss_pred             EEeccce----eeccccccccceeeeeccc
Q 015886          325 KYHGDLI----SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       325 ~~~~~~~----~~~~~~~~L~~l~i~~~~~  350 (398)
                      .++++..    ..+...++|++++++.+..
T Consensus       301 ~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          301 DLSHNHLLHVERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             ECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             ECCCCcceecCccccccCcCCEEECCCCcc
Confidence            8888776    3345677888888866643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.40  E-value=2.5e-13  Score=130.41  Aligned_cols=236  Identities=15%  Similarity=0.082  Sum_probs=148.4

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHH-HHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIA-SLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~-~l~~~cp~Le~  190 (398)
                      ++++.|+++.+.....--+..+..+++|++|+++++.+...  .....+++|++|+|+++.+++.... ..+..+++|++
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  133 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM  133 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred             ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence            48888888774332222234566788999999999876432  4567789999999998887543332 23667899999


Q ss_pred             EEeeecCCccee--e-cCCCCCCceEEEecCCCcceee---e-----------------------------------ccc
Q 015886          191 LEIRSCEGLESL--D-LVNLSNLKEIILVNTSDIKRVE---I-----------------------------------KTS  229 (398)
Q Consensus       191 L~l~~~~~~~~~--~-i~~~~~L~~L~l~~~~~l~~~~---~-----------------------------------~~p  229 (398)
                      |++++|......  . +..+++|+.|++.++. +..+.   +                                   ..+
T Consensus       134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  212 (455)
T 3v47_A          134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT  212 (455)
T ss_dssp             EECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred             EECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence            999988654321  1 4567899999998872 11110   0                                   114


Q ss_pred             CceEEEEeeeeccc---------------eeEeec-------------------------CCCCCceEEeeccCCchHHH
Q 015886          230 NVNALAIHQTYLFP---------------IEVNVS-------------------------SCGNLKCLKFDFLPIEDEWL  269 (398)
Q Consensus       230 ~L~~l~l~~~~~~~---------------~~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~  269 (398)
                      +|++|+++++....               ....+.                         ..++|+.|+++++.+... .
T Consensus       213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~  291 (455)
T 3v47_A          213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-L  291 (455)
T ss_dssp             EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-C
T ss_pred             eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc-c
Confidence            56666666553100               000001                         124666666666665442 2


Q ss_pred             hhhhcCCCCCcEEeccCcccccccc---ccccccceEeccccccce---eccccCCCcceEEEeccce-----eeccccc
Q 015886          270 CNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNAL  338 (398)
Q Consensus       270 ~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~  338 (398)
                      ...+..+++|+.|+++++......+   ..+++|++|++++|....   .....+++|+.|.++++..     ..+.+++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            2335667888888888863222211   256788888888886532   2345678899998888776     3566788


Q ss_pred             cccceeeeecccc
Q 015886          339 SLSETSLCFSSHL  351 (398)
Q Consensus       339 ~L~~l~i~~~~~~  351 (398)
                      +|++++++.+...
T Consensus       372 ~L~~L~L~~N~l~  384 (455)
T 3v47_A          372 NLKELALDTNQLK  384 (455)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             cccEEECCCCccc
Confidence            8999998766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.40  E-value=1e-12  Score=126.16  Aligned_cols=217  Identities=18%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             CCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEE
Q 015886          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEII  214 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~  214 (398)
                      ++|++|+|+++.+...  ..+..+++|+.|+|+++.++.-.. ..+..+++|+.|++++|.....  -.+..+++|+.|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            4555555555544322  334455555666555554421111 1134455566666555432110  0122345556665


Q ss_pred             EecCCCcceeee----cccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886          215 LVNTSDIKRVEI----KTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (398)
Q Consensus       215 l~~~~~l~~~~~----~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (398)
                      ++++ .+..+..    .+++|+.|+++++.....  ...+..+++|+.|+++++.+...  . .+..+++|+.|+++++.
T Consensus       154 L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          154 LRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P-NLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C-CCTTCTTCCEEECTTSC
T ss_pred             CCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c-cccccccccEEECcCCc
Confidence            5555 2222221    345556665555331110  01234555666666665554431  1 13445566666666642


Q ss_pred             ccccc----cccccccceEeccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeecc-cchhhH
Q 015886          289 KLTSV----RISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS-HLMVNI  355 (398)
Q Consensus       289 ~~~~~----~~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~-~~~~~~  355 (398)
                       ++.+    ...+++|+.|+++++....   .....+++|+.|.+.++..     ..+...++|++++++.+. .-....
T Consensus       230 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          230 -FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             -CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             -CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence             2221    1134556666666555431   1223455666666666554     345567777777775553 122344


Q ss_pred             HHHHHH
Q 015886          356 EWVVEY  361 (398)
Q Consensus       356 ~~~~~~  361 (398)
                      .|+...
T Consensus       309 ~~l~~~  314 (452)
T 3zyi_A          309 LWLAWW  314 (452)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=6.2e-13  Score=127.63  Aligned_cols=212  Identities=15%  Similarity=0.061  Sum_probs=153.1

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  191 (398)
                      ++++.|+++.+... ...+..+..+++|++|+|+++.+...  ..+..+++|++|+|+++.++.-. ...+..+++|+.|
T Consensus        75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEE
Confidence            58899988764322 22244567789999999999877533  45677899999999998773211 1225678999999


Q ss_pred             EeeecCCccee---ecCCCCCCceEEEecCCCcceeee----cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886          192 EIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       192 ~l~~~~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      ++++|... .+   .+..+++|+.|++.+|..+..+..    .+++|++|+++++..... ..+..+++|+.|+++++.+
T Consensus       153 ~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcC
Confidence            99988543 22   244578999999998866666653    578999999998873322 2567889999999999887


Q ss_pred             chHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccce---eccccCCCcceEEEeccce
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI  331 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~  331 (398)
                      .... ...+..+++|+.|+++++. ++.+.    ..+++|+.|+++++....   .....+++|+.|.+.++..
T Consensus       231 ~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          231 PEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             SEEC-GGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cccC-cccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            6532 3346788999999999973 33332    256899999999986531   2345678899999988766

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.39  E-value=1.7e-12  Score=119.23  Aligned_cols=226  Identities=15%  Similarity=0.157  Sum_probs=132.0

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|+++.+... ...|..+..+++|++|+++++.+...+. ..+++|+.|+++++.+.... ...+..+++|+.|++
T Consensus        76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l  152 (330)
T 1xku_A           76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL  152 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccCh-hhcccccEEECCCCcccccC-HhHhcCCccccEEEC
Confidence            47777777653221 1224556667788888888776653221 12367888888777663222 223567788888888


Q ss_pred             eecCCcc----eeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchH
Q 015886          194 RSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDE  267 (398)
Q Consensus       194 ~~~~~~~----~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~  267 (398)
                      .++....    .-.+..+++|+.|++.++ .+..+.. ..++|++|+++++..... ...+..+++|+.|+++++.+...
T Consensus       153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          153 GTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence            7765421    122344678888888777 2222322 236788888877662221 22456778888888887776553


Q ss_pred             HHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce---e-c-----cccCCCcceEEEeccce----
Q 015886          268 WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI---Q-V-----EIETPNLSIFKYHGDLI----  331 (398)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~---~-~-----~~~~p~L~~l~~~~~~~----  331 (398)
                      .. ..+..+++|+.|+++++ .++.++.   .+++|++|+++++..-.   . +     ....+.|+.+.+.+...    
T Consensus       232 ~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          232 DN-GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             CT-TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             Ch-hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            21 23456788888888886 3334433   45678888887776531   0 0     01235566666666544    


Q ss_pred             ---eeccccccccceee
Q 015886          332 ---SFSSNALSLSETSL  345 (398)
Q Consensus       332 ---~~~~~~~~L~~l~i  345 (398)
                         ..+....+|+.+++
T Consensus       310 i~~~~f~~~~~l~~l~L  326 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQL  326 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC
T ss_pred             cCccccccccceeEEEe
Confidence               23344555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=9.5e-14  Score=133.58  Aligned_cols=247  Identities=16%  Similarity=0.092  Sum_probs=146.8

Q ss_pred             CCeEEEEEecCCcc---ccCCccccCCCCeeEEEEeccccCCC-------CccccCcccceEEEEEEEeCHHH---HHHH
Q 015886          115 EVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP-------SENVKLFSLRKLALREVCADDQA---IASL  181 (398)
Q Consensus       115 ~l~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~l~~~-------~~~~~~~~L~~L~L~~~~~~~~~---l~~l  181 (398)
                      ++++|+++.+....   ..++..+..+++|++|+++++.+...       ......++|++|++++|.+++..   +...
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            47777776643222   23455566677777777777765322       01122456777777777764433   3444


Q ss_pred             HhcCccccEEEeeecCCcce-e-ecC-----CCCCCceEEEecCCCcce-----ee---ecccCceEEEEeeeeccce--
Q 015886          182 ISGCPLIEYLEIRSCEGLES-L-DLV-----NLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLFPI--  244 (398)
Q Consensus       182 ~~~cp~Le~L~l~~~~~~~~-~-~i~-----~~~~L~~L~l~~~~~l~~-----~~---~~~p~L~~l~l~~~~~~~~--  244 (398)
                      +..++.|++|++++|..... . .+.     ..++|++|++.+|. +..     +.   ..+++|++|+++++.....  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            56678888888877653210 0 010     13588888888872 221     11   1467888888887761110  


Q ss_pred             ----eEeecCCCCCceEEeeccCCchHH---HhhhhcCCCCCcEEeccCcccccccc---------ccccccceEecccc
Q 015886          245 ----EVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLTSVR---------ISSPCLKTLILECC  308 (398)
Q Consensus       245 ----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~~~---------~~~~~L~~L~l~~c  308 (398)
                          ......+++|++|+++++.+++..   +...+..+++|+.|+++++. ++..+         ...++|++|++++|
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCC
Confidence                011235788888888888887754   44445568889999988863 22211         12368999999888


Q ss_pred             cccee-------ccccCCCcceEEEeccce-----ee----cc-ccccccceeeeecccchhhHHHHHHHHH
Q 015886          309 DKLIQ-------VEIETPNLSIFKYHGDLI-----SF----SS-NALSLSETSLCFSSHLMVNIEWVVEYFE  363 (398)
Q Consensus       309 ~~~~~-------~~~~~p~L~~l~~~~~~~-----~~----~~-~~~~L~~l~i~~~~~~~~~~~~~~~~~~  363 (398)
                      .....       .....++|+.|.++++..     ..    +. ..++|++++++.+.....+...+.....
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  395 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  395 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence            75421       224568899999888766     11    11 2568999999777654433334444333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=7.2e-13  Score=126.73  Aligned_cols=212  Identities=14%  Similarity=0.074  Sum_probs=138.4

Q ss_pred             CCCeEEEEEecCCccccC-CccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      .+++.|+++.+..  ..+ +..+..+++|++|+|+++.+...  ..+..+++|++|+|+++.++.-. ...+..+++|+.
T Consensus        64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence            4677777766332  223 23456678888888888876533  34567888888888887763211 112456788888


Q ss_pred             EEeeecCCcce--eecCCCCCCceEEEecCCCcceeee----cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886          191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       191 L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      |+++++....-  ..+..+++|+.|++.+|..+..+..    .+++|++|+++++..... ..+..+++|+.|+++++.+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cccCCCcccCEEECCCCcc
Confidence            88887753321  1244568888888887755555543    467888888887763221 2467778888888888876


Q ss_pred             chHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccccccce---eccccCCCcceEEEeccce
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI  331 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~  331 (398)
                      .... ...+..+++|+.|+++++. ++.+..    .+++|+.|+++++....   .....+++|+.+.+.++.+
T Consensus       220 ~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          220 SAIR-PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEEC-TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CccC-hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            6532 2335677888888888863 333322    56788888888876531   2335567888888888766

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.38  E-value=3.3e-13  Score=123.07  Aligned_cols=215  Identities=11%  Similarity=0.066  Sum_probs=149.8

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccC--CCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      .++++.|+++.+......+|..+..+++|++|+++++.+.  .+.....+++|++|+|+++.+... +...+..+++|+.
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence            3699999998533344467888888999999999999875  335677899999999999987421 1123567899999


Q ss_pred             EEeeecCCccee--ecCCCC-CCceEEEecCCCcceee--ecccCceEEEEeeeecc-ceeEeecCCCCCceEEeeccCC
Q 015886          191 LEIRSCEGLESL--DLVNLS-NLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       191 L~l~~~~~~~~~--~i~~~~-~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      |++.+|.....+  .+..++ +|+.|++.++.....+.  +...+|+.|+++++... .....+..+++|+.|+++++.+
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            999998654322  344455 89999999882111121  22224999999988722 2233567899999999998887


Q ss_pred             chHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccceecc--ccCCCcceEEEeccc
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHGDL  330 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~~~~--~~~p~L~~l~~~~~~  330 (398)
                      .... .. +..+++|+.|+++++.....++.   .+++|++|+++++.....+.  ...++|+.+.+.+.+
T Consensus       234 ~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          234 AFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCBG-GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             eeec-Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            6422 12 56789999999999754333333   56899999999987653322  345566666666644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=2e-12  Score=117.59  Aligned_cols=186  Identities=19%  Similarity=0.192  Sum_probs=124.2

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      .+++++|++..+..  ..++ .+..+++|++|++++|.+...+....+++|+.|+|+++.+.+-.   -+..+++|+.|+
T Consensus        40 l~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEE
Confidence            35888888876432  2344 46678899999999988776644778889999999988873321   266788999999


Q ss_pred             eeecCCcceeecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHh
Q 015886          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (398)
Q Consensus       193 l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (398)
                      +++|.....-.+..+++|+.|.+.+| .+..+.  ..+++|+.|+++++...... .+..+++|+.|+++++.+.+..  
T Consensus       114 l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--  189 (308)
T 1h6u_A          114 LTSTQITDVTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS--  189 (308)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcCh--
Confidence            98875433223566788888888887 222222  25677888888777622211 1677788888888877765422  


Q ss_pred             hhhcCCCCCcEEeccCcccccccc--ccccccceEecccccc
Q 015886          271 NGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDK  310 (398)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l~~c~~  310 (398)
                      . +..+++|+.|+++++. ++.+.  ..+++|+.|+++++..
T Consensus       190 ~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          190 P-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             G-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             h-hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCee
Confidence            1 5567888888888763 22222  2456777777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=1.6e-12  Score=130.16  Aligned_cols=151  Identities=9%  Similarity=0.042  Sum_probs=103.2

Q ss_pred             CCCeEEEEEecCCccc----------------cCCcccc--CCCCeeEEEEeccccCCC--CccccCcccceEEEEEEE-
Q 015886          114 SEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-  172 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-  172 (398)
                      +++++|+++.+.....                .+|..+.  .+++|++|++++|.+...  .....+++|+.|+++++. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            5899999998542220                1888888  899999999999976433  567789999999999998 


Q ss_pred             eCHHHHHHHHh------cCccccEEEeeecCCccee----ecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeee
Q 015886          173 ADDQAIASLIS------GCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTY  240 (398)
Q Consensus       173 ~~~~~l~~l~~------~cp~Le~L~l~~~~~~~~~----~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~  240 (398)
                      ++...+..-+.      .+++|+.|++.+|... .+    .+..+++|+.|++.+|.....++  ...++|+.|+++++.
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence            66523333233      4599999999988654 33    35567889999998872211332  245677888877766


Q ss_pred             ccceeEeecCCCC-CceEEeeccCCc
Q 015886          241 LFPIEVNVSSCGN-LKCLKFDFLPIE  265 (398)
Q Consensus       241 ~~~~~~~~~~~~~-L~~L~l~~~~~~  265 (398)
                      .......+..+++ |++|+++++.+.
T Consensus       365 l~~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          365 ITEIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             EEECCTTSEEECTTCCEEECCSSCCS
T ss_pred             cccccHhhhhhcccCcEEEccCCcCc
Confidence            3222223455666 777777666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.36  E-value=1.5e-11  Score=120.14  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=79.0

Q ss_pred             CceEEEecCCCcceee--ecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCch-HHHhhhhcCCCCCcEEecc
Q 015886          210 LKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMT  285 (398)
Q Consensus       210 L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~  285 (398)
                      |+.|.+.++. +..+.  ..+++|++|+++++.... ....++.+++|+.|+++++.+.. ..+...+..+++|+.|+++
T Consensus       304 L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          304 IKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             CSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             eeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            5555555541 12222  356677777777766211 12345667777777777777664 2233445667777777777


Q ss_pred             Cccccccccc----cc----------------------cccceEeccccccc--eeccccCCCcceEEEeccce-----e
Q 015886          286 KCHKLTSVRI----SS----------------------PCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI-----S  332 (398)
Q Consensus       286 ~c~~~~~~~~----~~----------------------~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----~  332 (398)
                      ++.....++.    .+                      ++|+.|++++|...  ......+++|+.|.+.++..     .
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence            6532221221    22                      35555555555432  11123667788888877766     2


Q ss_pred             eccccccccceeeeeccc
Q 015886          333 FSSNALSLSETSLCFSSH  350 (398)
Q Consensus       333 ~~~~~~~L~~l~i~~~~~  350 (398)
                      .+.+.++|+++++..+..
T Consensus       463 ~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          463 IFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             TTTTCTTCCEEECCSSCB
T ss_pred             HhccCCcccEEECcCCCC
Confidence            366778888888876643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.35  E-value=1e-13  Score=125.99  Aligned_cols=211  Identities=18%  Similarity=0.108  Sum_probs=146.1

Q ss_pred             CCCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCCC----CccccCcccceEEEEEEEeCHHHHHHHHhcCccc
Q 015886          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLI  188 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  188 (398)
                      +++++|+++.+..  ..+|.. +..+++|++|+++++.+...    .....+++|++|+++++.+..  +..-+..+++|
T Consensus        28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            4788888876432  356665 45789999999999876532    334468899999998887631  11115578999


Q ss_pred             cEEEeeecCCcce---eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeecc--ceeEeecCCCCCceEEe
Q 015886          189 EYLEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKF  259 (398)
Q Consensus       189 e~L~l~~~~~~~~---~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l  259 (398)
                      +.|+++++.....   -.+..+++|+.|++.+|. +..+.    ..+++|++|+++++...  .....+..+++|+.|++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence            9999988743321   124457899999999883 22221    25689999999888732  23345788999999999


Q ss_pred             eccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccce---eccccC-CCcceEEEeccce
Q 015886          260 DFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI---QVEIET-PNLSIFKYHGDLI  331 (398)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~---~~~~~~-p~L~~l~~~~~~~  331 (398)
                      +++.+.... ...+..+++|+.|+++++. ++.+.    ..+++|++|+++++....   ...... ++|+.+.+.++..
T Consensus       183 s~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          183 SQCQLEQLS-PTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TTSCCCEEC-TTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CCCCcCCcC-HHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            988876532 2335678999999999974 33322    256899999999987643   222344 4899999988665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.34  E-value=6.5e-14  Score=134.71  Aligned_cols=252  Identities=15%  Similarity=0.146  Sum_probs=173.3

Q ss_pred             HHhCCCeEEEEEecCCccc---cCCccccCCCCeeEEEEeccccCCC---CccccCc----ccceEEEEEEEeCHH---H
Q 015886          111 AIESEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP---SENVKLF----SLRKLALREVCADDQ---A  177 (398)
Q Consensus       111 ~~~~~l~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~----~L~~L~L~~~~~~~~---~  177 (398)
                      ...+++++|+++.+.....   .++..+..+++|++|+++++.+...   .....++    +|++|+|++|.+++.   .
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            4457999999998654332   4566677789999999999877542   1222344    799999999998653   4


Q ss_pred             HHHHHhcCccccEEEeeecCCcc----eee---cCCCCCCceEEEecCCCcce-----ee---ecccCceEEEEeeeecc
Q 015886          178 IASLISGCPLIEYLEIRSCEGLE----SLD---LVNLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLF  242 (398)
Q Consensus       178 l~~l~~~cp~Le~L~l~~~~~~~----~~~---i~~~~~L~~L~l~~~~~l~~-----~~---~~~p~L~~l~l~~~~~~  242 (398)
                      +...+..+++|++|++++|....    .+.   ....++|++|++.+|. +..     +.   ..+++|++|+++++...
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            55667899999999999986321    111   1123689999999982 222     11   24689999999988721


Q ss_pred             ce-eEee-----cCCCCCceEEeeccCCchHH---HhhhhcCCCCCcEEeccCcccccccc---------ccccccceEe
Q 015886          243 PI-EVNV-----SSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLTSVR---------ISSPCLKTLI  304 (398)
Q Consensus       243 ~~-~~~~-----~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~~~---------~~~~~L~~L~  304 (398)
                      .. ...+     ...++|++|+++++.+.+..   +...+..+++|+.|++++|. ++..+         ...++|++|+
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEE
Confidence            11 0111     13569999999999988753   45556789999999999973 33321         1468999999


Q ss_pred             ccccccce-------eccccCCCcceEEEeccce----------eeccccccccceeeeecccchhhHHHHHHHHHH
Q 015886          305 LECCDKLI-------QVEIETPNLSIFKYHGDLI----------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEI  364 (398)
Q Consensus       305 l~~c~~~~-------~~~~~~p~L~~l~~~~~~~----------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~  364 (398)
                      +++|....       .....+++|+.|.++++..          .+..+.++|+++.++.+.....+...+......
T Consensus       263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence            99996532       1224578999999998776          122234699999998776555444444444433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.34  E-value=6.5e-13  Score=121.33  Aligned_cols=222  Identities=14%  Similarity=0.075  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHHhccccCCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeE
Q 015886           64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHV  143 (398)
Q Consensus        64 ~~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~  143 (398)
                      ...+........    .....++.+.++.....  ..   ....+  ...++++.|+++.+...  ..+. +..+++|++
T Consensus        19 ~~~l~~~~~~~~----~~~~~L~~L~L~~n~l~--~~---~~~~~--~~l~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~   84 (317)
T 3o53_A           19 DSSLKQALASLR----QSAWNVKELDLSGNPLS--QI---SAADL--APFTKLELLNLSSNVLY--ETLD-LESLSTLRT   84 (317)
T ss_dssp             TTTHHHHHHHHH----TTGGGCSEEECTTSCCC--CC---CHHHH--TTCTTCCEEECTTSCCE--EEEE-ETTCTTCCE
T ss_pred             ccchhhhHHHHh----ccCCCCCEEECcCCccC--cC---CHHHh--hCCCcCCEEECCCCcCC--cchh-hhhcCCCCE
Confidence            344555555444    12346777766543221  11   11111  22358999999874332  2233 677899999


Q ss_pred             EEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcc--eeecCCCCCCceEEEecCCCc
Q 015886          144 LELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDI  221 (398)
Q Consensus       144 L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~--~~~i~~~~~L~~L~l~~~~~l  221 (398)
                      |++++|.+..   ....++|+.|+++++.++...    ...++.|+.|++++|....  ...+..+++|+.|+++++ .+
T Consensus        85 L~Ls~n~l~~---l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l  156 (317)
T 3o53_A           85 LDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EI  156 (317)
T ss_dssp             EECCSSEEEE---EEECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CC
T ss_pred             EECcCCcccc---ccCCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CC
Confidence            9999998753   234589999999998874322    2357899999999885432  234455789999999988 33


Q ss_pred             ceee-----ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-
Q 015886          222 KRVE-----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-  295 (398)
Q Consensus       222 ~~~~-----~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-  295 (398)
                      ..+.     ..+++|+.|+++++..... .....+++|+.|+++++.+....  ..+..+++|+.|+++++ .++.++. 
T Consensus       157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~L~L~~N-~l~~l~~~  232 (317)
T 3o53_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNN-KLVLIEKA  232 (317)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEEC--GGGGGGTTCSEEECTTS-CCCEECTT
T ss_pred             CcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcch--hhhcccCcccEEECcCC-cccchhhH
Confidence            3332     2468899999988873322 23345889999999988876521  12556789999999986 3344443 


Q ss_pred             --cccccceEeccccccc
Q 015886          296 --SSPCLKTLILECCDKL  311 (398)
Q Consensus       296 --~~~~L~~L~l~~c~~~  311 (398)
                        .+++|+.|++++++..
T Consensus       233 ~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          233 LRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCCCTTCCEEECTTCCCB
T ss_pred             hhcCCCCCEEEccCCCcc
Confidence              4567888888877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.34  E-value=1.4e-12  Score=117.23  Aligned_cols=176  Identities=17%  Similarity=0.122  Sum_probs=102.8

Q ss_pred             ccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee---e
Q 015886          129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---D  203 (398)
Q Consensus       129 ~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~---~  203 (398)
                      ..+|..+  .++|++|+++++.+...  ..+..+++|++|+++++.++.... ..+..+++|+.|+++++..+..+   .
T Consensus        24 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~  100 (285)
T 1ozn_A           24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPAT  100 (285)
T ss_dssp             SSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             ccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHH
Confidence            3444433  35788888888766533  345677888888888776632211 12456788888888877644433   2


Q ss_pred             cCCCCCCceEEEecCCCccee----eecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCchHHHhhhhcCCCC
Q 015886          204 LVNLSNLKEIILVNTSDIKRV----EIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL  278 (398)
Q Consensus       204 i~~~~~L~~L~l~~~~~l~~~----~~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  278 (398)
                      +..+++|+.|++.++. +..+    ....++|++|+++++....... .++.+++|+.|+++++.+.... ...+..+++
T Consensus       101 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~  178 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHS  178 (285)
T ss_dssp             TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred             hcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccc
Confidence            3446778888887772 2222    1245677777777665222111 2456777777777776655321 122455677


Q ss_pred             CcEEeccCccccccc-c---ccccccceEecccccc
Q 015886          279 LEYLSMTKCHKLTSV-R---ISSPCLKTLILECCDK  310 (398)
Q Consensus       279 L~~L~l~~c~~~~~~-~---~~~~~L~~L~l~~c~~  310 (398)
                      |+.|+++++. ++.+ +   ..+++|+.|+++++..
T Consensus       179 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCEEECCCCc-ccccCHhHccCcccccEeeCCCCcC
Confidence            7777777753 2222 1   1345667776666643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.32  E-value=3.4e-12  Score=116.02  Aligned_cols=184  Identities=20%  Similarity=0.168  Sum_probs=82.1

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~  218 (398)
                      ++|++|++.++.+...+....+++|+.|+|+++.+.+-.-   +..+++|+.|++++|.....-.+..+++|+.|++++|
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST  117 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC
Confidence            4455555555554433344445555555555555422111   4455555555555543221112333455555555555


Q ss_pred             CCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc--
Q 015886          219 SDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--  294 (398)
Q Consensus       219 ~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--  294 (398)
                       .+..+.  ..+++|++|+++++...... .+..+++|+.|+++++.+.+.  .. +..+++|+.|+++++. ++.+.  
T Consensus       118 -~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l  191 (308)
T 1h6u_A          118 -QITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNK-ISDISPL  191 (308)
T ss_dssp             -CCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred             -CCCCchhhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCc-cCcChhh
Confidence             111111  13455555555555411111 144555555555555554431  11 3445555555555542 12211  


Q ss_pred             ccccccceEeccccccce-eccccCCCcceEEEeccce
Q 015886          295 ISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI  331 (398)
Q Consensus       295 ~~~~~L~~L~l~~c~~~~-~~~~~~p~L~~l~~~~~~~  331 (398)
                      ..+++|++|++++|.... .-...+++|+.|.+.++..
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             cCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence            234455555555554321 1123445555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=4.6e-12  Score=129.84  Aligned_cols=150  Identities=13%  Similarity=0.105  Sum_probs=102.9

Q ss_pred             CCCeEEEEEecCCccc----------------cCCcccc--CCCCeeEEEEeccccCCC--CccccCcccceEEEEEEE-
Q 015886          114 SEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-  172 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-  172 (398)
                      ++++.|+++.+.....                .+|..+.  .+++|++|+|++|.+...  .....+++|+.|+|+++. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            5899999998543321                2888877  899999999999876433  567789999999999997 


Q ss_pred             eCHHH----HHHH---HhcCccccEEEeeecCCccee----ecCCCCCCceEEEecCCCcceee--ecccCceEEEEeee
Q 015886          173 ADDQA----IASL---ISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQT  239 (398)
Q Consensus       173 ~~~~~----l~~l---~~~cp~Le~L~l~~~~~~~~~----~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~  239 (398)
                      ++...    +..+   +..+|+|+.|++++|... .+    .+..+++|+.|++++|. +..++  ..+++|+.|+++++
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCC
Confidence            66522    2222   235669999999988654 33    24567888888888872 22332  25677888888777


Q ss_pred             eccceeEeecCCCC-CceEEeeccCCc
Q 015886          240 YLFPIEVNVSSCGN-LKCLKFDFLPIE  265 (398)
Q Consensus       240 ~~~~~~~~~~~~~~-L~~L~l~~~~~~  265 (398)
                      ........+..+++ |+.|+++++.+.
T Consensus       606 ~l~~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          606 QIEEIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             CCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred             ccccchHHHhhccccCCEEECcCCCCC
Confidence            63333334556666 777777766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.31  E-value=4.9e-13  Score=125.64  Aligned_cols=197  Identities=19%  Similarity=0.164  Sum_probs=116.5

Q ss_pred             CCCeEEEEEecCCccc---cCCccccCCCCeeEEEEeccccCCC-----Cc-------cccCcccceEEEEEEEeCHH--
Q 015886          114 SEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP-----SE-------NVKLFSLRKLALREVCADDQ--  176 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~-----~~-------~~~~~~L~~L~L~~~~~~~~--  176 (398)
                      +++++|+++.+.....   .++..+..+++|++|+|++|.+...     ..       ...+++|++|+|+++.+++.  
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            5788888876432221   2334455678888888888644321     11       24678888888888888543  


Q ss_pred             -HHHHHHhcCccccEEEeeecCCcce--ee----cCCC---------CCCceEEEecCCCc-ceee------ecccCceE
Q 015886          177 -AIASLISGCPLIEYLEIRSCEGLES--LD----LVNL---------SNLKEIILVNTSDI-KRVE------IKTSNVNA  233 (398)
Q Consensus       177 -~l~~l~~~cp~Le~L~l~~~~~~~~--~~----i~~~---------~~L~~L~l~~~~~l-~~~~------~~~p~L~~  233 (398)
                       .+...+..+++|+.|++++|.....  ..    +..+         ++|++|.+.+|.-- ..+.      ..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             3444567788888888888754210  01    1112         67888888777211 1111      14567777


Q ss_pred             EEEeeeeccc-----eeE-eecCCCCCceEEeeccCCchH---HHhhhhcCCCCCcEEeccCccccccc-----cc----
Q 015886          234 LAIHQTYLFP-----IEV-NVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKCHKLTSV-----RI----  295 (398)
Q Consensus       234 l~l~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~~~~~-----~~----  295 (398)
                      |+++++....     ... .+..+++|+.|+|+++.+++.   .+...+..+++|+.|+|++|. ++..     +.    
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK  270 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhh
Confidence            7777765221     111 345677777777777777642   233445667777777777763 2221     11    


Q ss_pred             -cccccceEeccccccc
Q 015886          296 -SSPCLKTLILECCDKL  311 (398)
Q Consensus       296 -~~~~L~~L~l~~c~~~  311 (398)
                       ..++|++|++++|...
T Consensus       271 ~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             CSSCCCCEEECCSSCCB
T ss_pred             ccCCCeEEEECcCCcCC
Confidence             1566777777776643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=3.9e-12  Score=126.38  Aligned_cols=102  Identities=14%  Similarity=0.019  Sum_probs=76.5

Q ss_pred             cccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccce
Q 015886          227 KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKT  302 (398)
Q Consensus       227 ~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~  302 (398)
                      .+++|+.|+++++..... ...++.+++|+.|+++++.+...  ......+|+|+.|++++|. +..++.   .+++|++
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~  328 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLEN  328 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSE
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCC-CCccCcccccCCCCCE
Confidence            567888888887763222 23568899999999999887652  3334568999999999973 334443   5789999


Q ss_pred             EeccccccceeccccCCCcceEEEeccce
Q 015886          303 LILECCDKLIQVEIETPNLSIFKYHGDLI  331 (398)
Q Consensus       303 L~l~~c~~~~~~~~~~p~L~~l~~~~~~~  331 (398)
                      |++++|....--....++|+.|.+.++.+
T Consensus       329 L~L~~N~l~~~~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          329 LYLDHNSIVTLKLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             EECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             EECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence            99999986543356678999999998876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=1.6e-12  Score=125.86  Aligned_cols=218  Identities=19%  Similarity=0.154  Sum_probs=148.8

Q ss_pred             CCeEEEEEecCCccccCC-ccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          115 EVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++.|+++.+..  ..++ ..+..+++|++|+|++|.+........+++|+.|+|++|.+++      +...|.|+.|++
T Consensus        35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred             CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence            789998887432  2343 4667789999999999987644447788999999999988742      224489999999


Q ss_pred             eecCCcceeecCCCCCCceEEEecCC--Ccceee-ecccCceEEEEeeeeccc-eeEee-cCCCCCceEEeeccCCchHH
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNTS--DIKRVE-IKTSNVNALAIHQTYLFP-IEVNV-SSCGNLKCLKFDFLPIEDEW  268 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~l~l~~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~  268 (398)
                      ++|.... +....+++|+.|.+.+|.  .+.... ..+++|+.|+++++.... ....+ ..+++|+.|+++++.+... 
T Consensus       107 ~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          107 ANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             CSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             cCCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            9875443 333446889999999882  222222 257889999998876222 11223 3678999999998887653 


Q ss_pred             HhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce--eccccCCCcceEEEeccce------eecccc
Q 015886          269 LCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI------SFSSNA  337 (398)
Q Consensus       269 ~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~~~~~~~------~~~~~~  337 (398)
                       .. ...+++|+.|+++++. ++.++.   .+++|+.|+++++....  .....+++|+.+.+.++..      .++...
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          185 -KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             -EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             -cc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence             11 2357899999999863 333332   56789999998877542  2234567888888888665      344555


Q ss_pred             ccccceee
Q 015886          338 LSLSETSL  345 (398)
Q Consensus       338 ~~L~~l~i  345 (398)
                      +.|+.+.+
T Consensus       262 ~~L~~l~~  269 (487)
T 3oja_A          262 QRVQTVAK  269 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CCCcEEec
Confidence            55555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.29  E-value=6.1e-12  Score=129.99  Aligned_cols=96  Identities=11%  Similarity=0.002  Sum_probs=63.6

Q ss_pred             CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccc---eeccccCCCcceE
Q 015886          252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKL---IQVEIETPNLSIF  324 (398)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~---~~~~~~~p~L~~l  324 (398)
                      ++|+.|+++++.+... ....+..+++|+.|+++++. ++.+.    ..+++|++|+++++...   ......+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred             CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence            5677777776665432 12335667788888887753 22221    25678888888887643   2234567788888


Q ss_pred             EEeccce-----eeccccccccceeeeecc
Q 015886          325 KYHGDLI-----SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       325 ~~~~~~~-----~~~~~~~~L~~l~i~~~~  349 (398)
                      .+.++..     ..+.++++|+.++++.+.
T Consensus       344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             ECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             ECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence            8888766     456778899999997664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.29  E-value=4.7e-12  Score=124.48  Aligned_cols=82  Identities=21%  Similarity=0.125  Sum_probs=54.0

Q ss_pred             CCCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCC---CCccccCcccceEEEEEEEe-CHHHHHHHHhcCccc
Q 015886          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQ---PSENVKLFSLRKLALREVCA-DDQAIASLISGCPLI  188 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~---~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~L  188 (398)
                      +++++|+++.+.  ...++.. +..+++|++|+++++.+..   +.....+++|++|+++++.. +.- ....+..+++|
T Consensus        74 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L  150 (549)
T 2z81_A           74 GSLEHLDLSDNH--LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSL  150 (549)
T ss_dssp             TTCCEEECTTSC--CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEE
T ss_pred             ccCCEEECCCCc--cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-CHhhhhccccc
Confidence            478888777532  2344443 6677888888888887653   24567788888888888763 211 11124667888


Q ss_pred             cEEEeeecCC
Q 015886          189 EYLEIRSCEG  198 (398)
Q Consensus       189 e~L~l~~~~~  198 (398)
                      ++|++.+|..
T Consensus       151 ~~L~L~~n~l  160 (549)
T 2z81_A          151 NELEIKALSL  160 (549)
T ss_dssp             EEEEEEETTC
T ss_pred             CeeeccCCcc
Confidence            8888887753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.28  E-value=8.1e-12  Score=122.81  Aligned_cols=124  Identities=19%  Similarity=0.143  Sum_probs=59.0

Q ss_pred             CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      ++++|+++.+... ...|..+..+++|++|+++++.+...  ..+..+++|++|+|+++.+....- ..+..+++|+.|+
T Consensus        27 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~  104 (549)
T 2z81_A           27 AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLN  104 (549)
T ss_dssp             TCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEE
T ss_pred             CccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEEE
Confidence            5555555543211 11233444556666666666554322  234455666666666655532111 1234556666666


Q ss_pred             eeecCCcc-e--eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeee
Q 015886          193 IRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY  240 (398)
Q Consensus       193 l~~~~~~~-~--~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~  240 (398)
                      +++|.... .  -.+..+++|+.|++.+|.....+.    ..+++|++|+++++.
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            66553221 0  123344566666666553233332    134555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.28  E-value=5.3e-13  Score=121.60  Aligned_cols=196  Identities=15%  Similarity=0.069  Sum_probs=106.6

Q ss_pred             CCCCeeEEEEeccccCCC--Ccc--ccCcccceEEEEEEEeCHH--HHHHHHh-cCccccEEEeeecCCccee--ecCCC
Q 015886          137 YVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQ--AIASLIS-GCPLIEYLEIRSCEGLESL--DLVNL  207 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~--~~~--~~~~~L~~L~L~~~~~~~~--~l~~l~~-~cp~Le~L~l~~~~~~~~~--~i~~~  207 (398)
                      .+++|++|+++++.+...  ...  ..+++|+.|+|+++.++..  .+..+.. ..++|+.|++++|......  .+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            577888888888877532  222  6788889999988887332  2222211 1378888888877543211  23345


Q ss_pred             CCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCch--HHHhhhhcCCCCCcEEecc
Q 015886          208 SNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED--EWLCNGISKLPLLEYLSMT  285 (398)
Q Consensus       208 ~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~  285 (398)
                      ++|+.|+++++.-...+.                .+....+..+++|++|+++++.+..  .....++..+++|+.|+++
T Consensus       173 ~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS  236 (312)
T ss_dssp             SSCCEEECCSCTTCHHHH----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred             CCCCEEECCCCCcCcchH----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence            666666666552111100                0001122556666666666666552  2233444556666666666


Q ss_pred             Cccccccc----cccccccceEeccccccceeccccC-CCcceEEEeccce---eeccccccccceeeeecc
Q 015886          286 KCHKLTSV----RISSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDLI---SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       286 ~c~~~~~~----~~~~~~L~~L~l~~c~~~~~~~~~~-p~L~~l~~~~~~~---~~~~~~~~L~~l~i~~~~  349 (398)
                      ++.-....    ...+++|++|+++++..- .+.... ++|+.|.++++..   ..+...++|++++++.+.
T Consensus       237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCC
Confidence            65322211    113456666666666543 222111 4666666666655   225566777777775443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.28  E-value=1.1e-10  Score=113.85  Aligned_cols=144  Identities=15%  Similarity=0.096  Sum_probs=91.9

Q ss_pred             hcCccccEEEeeecCCcc--eeecCCCCCCceEEEecCCCcc---eee---ecccCceEEEEeeeeccc-eeE-eecCCC
Q 015886          183 SGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIK---RVE---IKTSNVNALAIHQTYLFP-IEV-NVSSCG  252 (398)
Q Consensus       183 ~~cp~Le~L~l~~~~~~~--~~~i~~~~~L~~L~l~~~~~l~---~~~---~~~p~L~~l~l~~~~~~~-~~~-~~~~~~  252 (398)
                      ..++.|+.|++++|....  .-.+..+++|+.|++++|. +.   .++   ...++|++|+++++.... ... .+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            456677777776664332  1123446778888887772 22   211   256788888887776221 111 256678


Q ss_pred             CCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce---eccccCCCcceEEE
Q 015886          253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI---QVEIETPNLSIFKY  326 (398)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~  326 (398)
                      +|+.|+++++.+.......+   .++|+.|++++| .++.++.   .+++|++|++++|....   .....+++|+.+.+
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSC---CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCcchhhhh---cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence            88888888887765432221   168999999997 3444443   67899999999996541   12355788999999


Q ss_pred             eccce
Q 015886          327 HGDLI  331 (398)
Q Consensus       327 ~~~~~  331 (398)
                      .+++.
T Consensus       476 ~~N~~  480 (520)
T 2z7x_B          476 HTNPW  480 (520)
T ss_dssp             CSSCB
T ss_pred             cCCCC
Confidence            88443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=4.4e-12  Score=129.99  Aligned_cols=229  Identities=13%  Similarity=0.109  Sum_probs=130.3

Q ss_pred             CCCeEEEEEecCCccccCCc--cccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCcc-ccE
Q 015886          114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL-IEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-Le~  190 (398)
                      ++++.|+++.+...  .+|.  .+..+++|+.|+++++.+...+....+++|+.|+|+++.+.  .+..-+..++. |+.
T Consensus       548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred             CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence            47888888875433  7787  77788888888888887763356677888888888888764  22223556777 888


Q ss_pred             EEeeecCCcceee--cC--CCCCCceEEEecCC----------------------------Ccceeee----cccCceEE
Q 015886          191 LEIRSCEGLESLD--LV--NLSNLKEIILVNTS----------------------------DIKRVEI----KTSNVNAL  234 (398)
Q Consensus       191 L~l~~~~~~~~~~--i~--~~~~L~~L~l~~~~----------------------------~l~~~~~----~~p~L~~l  234 (398)
                      |++++|... .+.  +.  ..++|+.|++++|.                            .+..++.    .+++|+.|
T Consensus       624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI  702 (876)
T ss_dssp             EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred             EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence            888877432 111  00  11224455544441                            1112211    34556666


Q ss_pred             EEeeeeccceeEe--------ecCCCCCceEEeeccCCchHHHhhhhc--CCCCCcEEeccCccccccccc---cccccc
Q 015886          235 AIHQTYLFPIEVN--------VSSCGNLKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCHKLTSVRI---SSPCLK  301 (398)
Q Consensus       235 ~l~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~---~~~~L~  301 (398)
                      +++++........        ..++++|+.|+|+++.+..  +...+.  .+++|+.|+|+++. ++.++.   .+++|+
T Consensus       703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~--lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~  779 (876)
T 4ecn_A          703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLK  779 (876)
T ss_dssp             ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC--CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCC
T ss_pred             ECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc--chHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCC
Confidence            6655541111111        1122367777777766652  222233  67777777777752 222332   556777


Q ss_pred             eEeccccc------cc---eeccccCCCcceEEEeccce--eeccccccccceeeeeccc
Q 015886          302 TLILECCD------KL---IQVEIETPNLSIFKYHGDLI--SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       302 ~L~l~~c~------~~---~~~~~~~p~L~~l~~~~~~~--~~~~~~~~L~~l~i~~~~~  350 (398)
                      .|+++++.      ..   ......+++|+.|.++++..  .-..-.++|+.++++.+..
T Consensus       780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPN  839 (876)
T ss_dssp             EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTT
T ss_pred             EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCC
Confidence            77776633      11   12234567788888777766  1001125788888866643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.27  E-value=3e-12  Score=117.68  Aligned_cols=226  Identities=15%  Similarity=0.119  Sum_probs=130.6

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|+++.+... ...|..+..+++|++|+++++.+...+... +++|++|+++++.+..-. ...+..+++|+.|++
T Consensus        78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l  154 (332)
T 2ft3_A           78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEM  154 (332)
T ss_dssp             TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEEC
T ss_pred             CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCccC-HhHhCCCccCCEEEC
Confidence            46777776653221 112344556677777777777665332211 267777777777663111 112456777777777


Q ss_pred             eecCCcc----eeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchH
Q 015886          194 RSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDE  267 (398)
Q Consensus       194 ~~~~~~~----~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~  267 (398)
                      .++....    .-.+..+ +|+.|++.++ .+..++. ..++|++|+++++...... ..+..+++|+.|+++++.+...
T Consensus       155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          155 GGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             CSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             CCCccccCCCCcccccCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence            7764421    1112222 6777777766 2222322 2257888888777622211 2466778888888888776553


Q ss_pred             HHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce---e-cc-----ccCCCcceEEEeccce----
Q 015886          268 WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI---Q-VE-----IETPNLSIFKYHGDLI----  331 (398)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~---~-~~-----~~~p~L~~l~~~~~~~----  331 (398)
                      . ...+..+++|+.|+++++ .++.++.   .+++|++|+++++..-.   . +.     ...++|+.+.+.+...    
T Consensus       233 ~-~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          233 E-NGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             C-TTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             C-hhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            2 123556788888888886 3334433   56778888888776531   0 10     1145677888777654    


Q ss_pred             ---eeccccccccceeee
Q 015886          332 ---SFSSNALSLSETSLC  346 (398)
Q Consensus       332 ---~~~~~~~~L~~l~i~  346 (398)
                         ..+..+++|+.+.+.
T Consensus       311 ~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          311 VQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             SCGGGGTTBCCSTTEEC-
T ss_pred             cCcccccccchhhhhhcc
Confidence               445667777777774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.27  E-value=6.8e-12  Score=115.19  Aligned_cols=226  Identities=16%  Similarity=0.089  Sum_probs=141.1

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      ++++.|+++.+.  ...++. .+..+++|++|+++++.+...  .....+++|++|+++++.++.-  .  ...++.|++
T Consensus        52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--~--~~~~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCE
T ss_pred             CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--C--hhhcccccE
Confidence            477777776532  223443 456678888888888776543  4566778888888887766311  0  012367888


Q ss_pred             EEeeecCCccee--ecCCCCCCceEEEecCCCc----c-eeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccC
Q 015886          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDI----K-RVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP  263 (398)
Q Consensus       191 L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l----~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (398)
                      |+++++......  .+..+++|+.|++.++..-    . .....+++|++|+++++.......  ...++|++|+++++.
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~L~~L~l~~n~  203 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNK  203 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--SCCTTCSEEECTTSC
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc--cccccCCEEECCCCc
Confidence            888876433211  2455688888888877221    1 111256788888888776322111  223788899988887


Q ss_pred             CchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccc--eeccccCCCcceEEEeccce-----e
Q 015886          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI-----S  332 (398)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----~  332 (398)
                      +.... ...+..+++|+.|+++++. ++.+.    ..+++|++|++++|...  .......++|+.|.+.++..     .
T Consensus       204 l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          204 ITKVD-AASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CCEEC-TGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCccC-HHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChh
Confidence            76532 2335678899999998863 22222    25678999999888654  12235667888888888776     1


Q ss_pred             ecc------ccccccceeeeecc
Q 015886          333 FSS------NALSLSETSLCFSS  349 (398)
Q Consensus       333 ~~~------~~~~L~~l~i~~~~  349 (398)
                      .+.      ....|+.+.+..+.
T Consensus       282 ~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          282 DFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSS
T ss_pred             hcCCcccccccccccceEeecCc
Confidence            111      23567777776554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.26  E-value=7.5e-12  Score=116.44  Aligned_cols=226  Identities=11%  Similarity=0.004  Sum_probs=112.7

Q ss_pred             CCCeeEEEEeccccCCC------CccccCc-ccceEEEEEEEeCH---HHHHHHHhcC-ccccEEEeeecCCccee----
Q 015886          138 VESLHVLELSYCKLQQP------SENVKLF-SLRKLALREVCADD---QAIASLISGC-PLIEYLEIRSCEGLESL----  202 (398)
Q Consensus       138 ~~~L~~L~L~~~~l~~~------~~~~~~~-~L~~L~L~~~~~~~---~~l~~l~~~c-p~Le~L~l~~~~~~~~~----  202 (398)
                      .++|++|++++|.+...      .....++ +|++|+|++|.+++   ..+...+..+ +.|++|++++|......    
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            34466666666655432      1123445 56666666665532   2333333333 66666666665422110    


Q ss_pred             --ecCCC-CCCceEEEecCCCcceeee--------c-ccCceEEEEeeeeccc-----eeEeecCCC-CCceEEeeccCC
Q 015886          203 --DLVNL-SNLKEIILVNTSDIKRVEI--------K-TSNVNALAIHQTYLFP-----IEVNVSSCG-NLKCLKFDFLPI  264 (398)
Q Consensus       203 --~i~~~-~~L~~L~l~~~~~l~~~~~--------~-~p~L~~l~l~~~~~~~-----~~~~~~~~~-~L~~L~l~~~~~  264 (398)
                        .+..+ ++|+.|++++|. +.....        . ..+|++|+++++....     ....+...+ +|++|+++++.+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence              01222 566666666652 222111        1 2366666666655211     001123343 677777776666


Q ss_pred             ch---HHHhhhhcCCC-CCcEEeccCcccccc-----ccc----cccccceEeccccccce-------eccccCCCcceE
Q 015886          265 ED---EWLCNGISKLP-LLEYLSMTKCHKLTS-----VRI----SSPCLKTLILECCDKLI-------QVEIETPNLSIF  324 (398)
Q Consensus       265 ~~---~~~~~~~~~~~-~L~~L~l~~c~~~~~-----~~~----~~~~L~~L~l~~c~~~~-------~~~~~~p~L~~l  324 (398)
                      .+   ..+...+..++ +|+.|++++|. ++.     +..    ..++|++|++++|..-.       ......++|+.|
T Consensus       180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          180 ASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             chhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            54   23334444553 77777777753 222     111    13467777777765431       122445677777


Q ss_pred             EEeccce------------eeccccccccceeeeecccchhhHHHHHHHHHHH
Q 015886          325 KYHGDLI------------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEIL  365 (398)
Q Consensus       325 ~~~~~~~------------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~l  365 (398)
                      .+.++..            ..+.+.++|+.++++.+......+..+.+..+.+
T Consensus       259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~~  311 (362)
T 3goz_A          259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL  311 (362)
T ss_dssp             EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHHH
T ss_pred             EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHHC
Confidence            7777661            3455677788888866654333333334433333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.26  E-value=4.1e-11  Score=114.82  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~  218 (398)
                      ++|++|++++|.+...+....+++|++|+++++.+..  +.   ...++|+.|++++|....--.+..+++|+.|.+.+|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            3455555555544333334445555555555554421  00   112355555555543221112333455555555554


Q ss_pred             CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886          219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       219 ~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                       .+..+....++|++|+++++...... .++.+++|+.|+++++.+
T Consensus       206 -~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          206 -SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             -CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             -cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence             22222222345555555555422111 244555555555555444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.26  E-value=1.4e-11  Score=121.57  Aligned_cols=76  Identities=18%  Similarity=0.163  Sum_probs=47.1

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcCccc--
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLI--  188 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L--  188 (398)
                      ++++.|+++.+..  ..+|..  .+++|++|+++++.+...   .....+++|+.|+++++.+....+    ..++.|  
T Consensus       100 ~~L~~L~Ls~N~l--~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L  171 (562)
T 3a79_B          100 QDLEYLDVSHNRL--QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHL  171 (562)
T ss_dssp             TTCCEEECTTSCC--CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCE
T ss_pred             CCCCEEECCCCcC--CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhcee
Confidence            4677777765332  245554  677888888888776532   356677888888888877744332    233444  


Q ss_pred             cEEEeeecC
Q 015886          189 EYLEIRSCE  197 (398)
Q Consensus       189 e~L~l~~~~  197 (398)
                      +.|++.++.
T Consensus       172 ~~L~L~~n~  180 (562)
T 3a79_B          172 SCILLDLVS  180 (562)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEeeccc
Confidence            666666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.25  E-value=2.6e-11  Score=125.34  Aligned_cols=118  Identities=15%  Similarity=0.101  Sum_probs=73.0

Q ss_pred             cCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccc----cccccccceE
Q 015886          229 SNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTL  303 (398)
Q Consensus       229 p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L  303 (398)
                      ++|+.|+++++.... ....+..+++|+.|+++++.+.... ...+..+++|+.|+++++. ++.+    ...+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEE
Confidence            567777777665211 1223567888888888888775432 2235677888888888863 2222    1256788888


Q ss_pred             eccccccc---eeccccCCCcceEEEeccceeeccccccccceeeeec
Q 015886          304 ILECCDKL---IQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFS  348 (398)
Q Consensus       304 ~l~~c~~~---~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~l~i~~~  348 (398)
                      +++++...   ......+++|+.|.+.++....+...++|+++.+..+
T Consensus       344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N  391 (844)
T 3j0a_A          344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN  391 (844)
T ss_dssp             ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESC
T ss_pred             ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCC
Confidence            88877542   1223456778888887766633333556666666443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.25  E-value=3.9e-12  Score=114.27  Aligned_cols=192  Identities=16%  Similarity=0.130  Sum_probs=131.8

Q ss_pred             CCCeEEEEEecCCccccCC-ccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEE-eCHHHHHHHHhcCcccc
Q 015886          114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIE  189 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le  189 (398)
                      +++++|+++.+..  ..++ ..+..+++|++|+++++.+...  .....+++|++|+++++. +..-. ...+..+++|+
T Consensus        32 ~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred             CCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence            4788888776332  2344 3456788999999999876533  456778999999999886 42211 12256789999


Q ss_pred             EEEeeecCCccee--ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccceeE-eecCCCCCceEEeecc
Q 015886          190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL  262 (398)
Q Consensus       190 ~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  262 (398)
                      .|++.+|......  .+..+++|+.|++.++ .+..+.    ..+++|++|+++++....... .+..+++|+.|+++++
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            9999887543321  2455789999999988 223332    257899999999886332222 3677899999999988


Q ss_pred             CCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccc
Q 015886          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKL  311 (398)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~  311 (398)
                      .+.... ...+..+++|+.|+++++ .++.++    ..+++|++|++++++..
T Consensus       188 ~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          188 RVAHVH-PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCCEEC-TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccC-HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence            876542 233567899999999997 333333    25678888888877653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.24  E-value=8.8e-11  Score=115.80  Aligned_cols=123  Identities=15%  Similarity=0.032  Sum_probs=66.4

Q ss_pred             cccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCch-HHHhhhhcCCCCCcEEeccCc-----------------
Q 015886          227 KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKC-----------------  287 (398)
Q Consensus       227 ~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c-----------------  287 (398)
                      ..++|++|+++++.... ....++.+++|+.|+++++.+.. ..+...+..+++|+.|+++++                 
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            44556666666554111 11234555666666666555543 122233444555555555554                 


Q ss_pred             --------cccccccccc-cccceEeccccccc--eeccccCCCcceEEEeccce-----eeccccccccceeeeecc
Q 015886          288 --------HKLTSVRISS-PCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       288 --------~~~~~~~~~~-~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~  349 (398)
                              .-...++... ++|+.|+++++..-  ..-...+++|+.|.+.++..     ..+...++|+.+++..+.
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence                    2212222222 46777777766432  11123567888888888776     336678888888887664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.24  E-value=3.4e-12  Score=127.66  Aligned_cols=226  Identities=15%  Similarity=0.143  Sum_probs=128.4

Q ss_pred             CCCeEEEEEecCCccccCCc--cccCCCCeeEEEEeccccC-CCCccccCcccceEEEEEEEeCHHHHHHHHhcCcc-cc
Q 015886          114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPL-IE  189 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-Le  189 (398)
                      +++++|+++.+...  .+|.  .+..+++|++|+++++.+. ..+....+++|+.|+++++.+.  .+..-+..++. |+
T Consensus       305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence            68999988875433  7887  7888899999999998775 3345667788888888887764  22222556677 88


Q ss_pred             EEEeeecCCcceee--cC--CCCCCceEEEecCC------------------------------Ccceeee----cccCc
Q 015886          190 YLEIRSCEGLESLD--LV--NLSNLKEIILVNTS------------------------------DIKRVEI----KTSNV  231 (398)
Q Consensus       190 ~L~l~~~~~~~~~~--i~--~~~~L~~L~l~~~~------------------------------~l~~~~~----~~p~L  231 (398)
                      .|++++|... .+.  +.  .+++|+.|++++|.                              .+..+..    .+++|
T Consensus       381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L  459 (636)
T 4eco_A          381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL  459 (636)
T ss_dssp             EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred             EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence            8888776432 111  11  12245555555441                              1111211    23555


Q ss_pred             eEEEEeeeeccceeEe--------ecCCCCCceEEeeccCCchHHHhhhhc--CCCCCcEEeccCccccccccc---ccc
Q 015886          232 NALAIHQTYLFPIEVN--------VSSCGNLKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCHKLTSVRI---SSP  298 (398)
Q Consensus       232 ~~l~l~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~---~~~  298 (398)
                      ++|+++++........        +..+++|+.|+++++.+..  +...+.  .+++|+.|+++++. ++.++.   .++
T Consensus       460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~  536 (636)
T 4eco_A          460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSS  536 (636)
T ss_dssp             SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB--CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCS
T ss_pred             CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc--cChhhhhccCCCcCEEECCCCC-CCCcChhhhcCC
Confidence            5555555441111110        1122267777777666652  222232  66777777777753 222332   456


Q ss_pred             ccceEeccccc------cce---eccccCCCcceEEEeccce----eeccccccccceeeeecc
Q 015886          299 CLKTLILECCD------KLI---QVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       299 ~L~~L~l~~c~------~~~---~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i~~~~  349 (398)
                      +|+.|+++++.      ...   .....+++|+.|.++++..    ..+  .++|+.++++.+.
T Consensus       537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~--~~~L~~L~Ls~N~  598 (636)
T 4eco_A          537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNP  598 (636)
T ss_dssp             SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC--CTTCCEEECCSCT
T ss_pred             CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH--hCcCCEEECcCCC
Confidence            77777775533      111   2234567777777777666    111  2577777776664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.24  E-value=9.7e-12  Score=125.53  Aligned_cols=167  Identities=19%  Similarity=0.090  Sum_probs=81.4

Q ss_pred             hcCccccEEEeeecCCcce---eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeec---cceeEeecCCC
Q 015886          183 SGCPLIEYLEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYL---FPIEVNVSSCG  252 (398)
Q Consensus       183 ~~cp~Le~L~l~~~~~~~~---~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~---~~~~~~~~~~~  252 (398)
                      ..+++|+.|++.+|.....   ..+..+++|+.|++.+|. +..+.    ..+|+|+.|+++++..   ......+..++
T Consensus       402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~  480 (680)
T 1ziw_A          402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR  480 (680)
T ss_dssp             TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred             hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence            4455666666655543221   123334556666665551 11111    1345555555554431   11122345566


Q ss_pred             CCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccc------------cccccccceEeccccccce---ecccc
Q 015886          253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV------------RISSPCLKTLILECCDKLI---QVEIE  317 (398)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~------------~~~~~~L~~L~l~~c~~~~---~~~~~  317 (398)
                      +|+.|+++++.+... ....+..+++|+.|+++++. ++.+            ...+++|+.|+++++....   .....
T Consensus       481 ~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          481 NLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             TCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCEEECCCCCCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            666666666655431 12224456666666666642 2222            1234566666666654321   12344


Q ss_pred             CCCcceEEEeccce-----eeccccccccceeeeecccch
Q 015886          318 TPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLM  352 (398)
Q Consensus       318 ~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~  352 (398)
                      +++|+.+.+++...     ..+.++++|++++++.+....
T Consensus       559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            55666666665554     334455666666665554333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.23  E-value=1.3e-11  Score=111.18  Aligned_cols=163  Identities=18%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      ++++.|.++.+..  ..++ .+..+++|++|+++++.+...+....+++|+.|+++++.+++-  .. +..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEEC
T ss_pred             CcccEEEccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEEC
Confidence            4778777765432  2233 3556788888888888776554467778888888888777331  11 567788888888


Q ss_pred             eecCCcceeecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhh
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  271 (398)
                      ++|....--.+..+++|+.|++++| .+..+.  ..+++|+.|+++++...... .+..+++|+.|+++++.+.+.  ..
T Consensus       120 ~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L~~N~i~~l--~~  195 (291)
T 1h6t_A          120 EHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL--RA  195 (291)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBC--GG
T ss_pred             CCCcCCCChhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccch-hhcCCCccCEEECCCCcCCCC--hh
Confidence            7764332222444677777777776 222221  24566777777666522111 156666677777766665542  12


Q ss_pred             hhcCCCCCcEEeccCc
Q 015886          272 GISKLPLLEYLSMTKC  287 (398)
Q Consensus       272 ~~~~~~~L~~L~l~~c  287 (398)
                       +..+++|+.|+++++
T Consensus       196 -l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          196 -LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             -GTTCTTCSEEEEEEE
T ss_pred             -hccCCCCCEEECcCC
Confidence             455666666666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.21  E-value=2.8e-11  Score=122.17  Aligned_cols=53  Identities=15%  Similarity=0.035  Sum_probs=28.0

Q ss_pred             ccccceEeccccccce---eccccCCCcceEEEeccce-e------------eccccccccceeeeecc
Q 015886          297 SPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-S------------FSSNALSLSETSLCFSS  349 (398)
Q Consensus       297 ~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-~------------~~~~~~~L~~l~i~~~~  349 (398)
                      +++|+.|+++++....   .....+++|+.|.++++.. .            .+.++++|+.++++.+.
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~  547 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG  547 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence            4456666665554321   1224455666666666544 1            14556666666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.20  E-value=1.9e-11  Score=120.92  Aligned_cols=165  Identities=18%  Similarity=0.175  Sum_probs=119.7

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      ..+|+.|.++.+..  ..++ .+..+++|+.|+|++|.+...+....+++|+.|+|++|.+.+-  . -+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence            45788887765432  2333 4667899999999999887665578899999999999988432  1 267889999999


Q ss_pred             eeecCCcceeecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHh
Q 015886          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (398)
Q Consensus       193 l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (398)
                      |++|.....-.+..+++|+.|.+++| .+..+.  ..+++|+.|+++++....... +..+++|+.|+|+++.+.+.  .
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~  191 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R  191 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--G
T ss_pred             ecCCCCCCCccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--h
Confidence            99886443223556789999999988 222222  267889999998887322212 78889999999998887663  2


Q ss_pred             hhhcCCCCCcEEeccCcc
Q 015886          271 NGISKLPLLEYLSMTKCH  288 (398)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~  288 (398)
                       .+..+++|+.|+|++|.
T Consensus       192 -~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          192 -ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             -GGTTCTTCSEEECCSEE
T ss_pred             -HHccCCCCCEEEccCCc
Confidence             36678999999998863

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.19  E-value=5.8e-12  Score=114.60  Aligned_cols=217  Identities=14%  Similarity=0.065  Sum_probs=108.8

Q ss_pred             CCeEEEEEecCCccccCCcc--ccCCCCeeEEEEeccccCCC--Ccc--ccCcccceEEEEEEEeCHHH--HH-HHHhcC
Q 015886          115 EVKELVLVHWRSERRNLPEI--IFYVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQA--IA-SLISGC  185 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~l~~~--~~~--~~~~~L~~L~L~~~~~~~~~--l~-~l~~~c  185 (398)
                      .++.+.+.........+...  ....++|++|++++|.+...  ...  ..+++|++|+|+++.++...  +. .-+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            67777776533222222111  12246699999999877533  222  67889999999998884311  11 113478


Q ss_pred             ccccEEEeeecCCccee--ecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccC
Q 015886          186 PLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP  263 (398)
Q Consensus       186 p~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (398)
                      ++|+.|++++|......  .+..+++|++|+++++.......                .+....++.+++|++|+++++.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------------LMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------------HHTTSCTTSSCCCCSCBCCSSC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------------hhHHHhhhcCCCCCEEECCCCC
Confidence            88888888887543211  23345677777776663211100                0000112344555555555555


Q ss_pred             Cch--HHHhhhhcCCCCCcEEeccCcccccccc---cc---ccccceEeccccccceecc-ccCCCcceEEEeccce---
Q 015886          264 IED--EWLCNGISKLPLLEYLSMTKCHKLTSVR---IS---SPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI---  331 (398)
Q Consensus       264 ~~~--~~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~---~~~L~~L~l~~c~~~~~~~-~~~p~L~~l~~~~~~~---  331 (398)
                      +..  .....++..+++|+.|+++++.-....+   ..   +++|++|+++++..- .+. ...++|+.|.++++..   
T Consensus       209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSC
T ss_pred             CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCC
Confidence            432  1112223445555555555542111111   11   145555555554432 111 1124555555555544   


Q ss_pred             eeccccccccceeeeec
Q 015886          332 SFSSNALSLSETSLCFS  348 (398)
Q Consensus       332 ~~~~~~~~L~~l~i~~~  348 (398)
                      ......++|++++++.+
T Consensus       288 ~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          288 PQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCTTSCCCCSCEECSST
T ss_pred             chhhhCCCccEEECcCC
Confidence            23455666777766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.18  E-value=1.4e-11  Score=114.17  Aligned_cols=212  Identities=18%  Similarity=0.144  Sum_probs=102.3

Q ss_pred             CCCeEEEEEecCCccccC-CccccCCCCeeEEEEeccccCCCC--ccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      ++++.|+++.+..  ..+ +..+..+++|++|+++++.+...+  ....+++|++|+++++.+..-.....+..+++|+.
T Consensus        76 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence            4666666654321  222 233555667777777776665432  24556777777777665531110012455677777


Q ss_pred             EEeeecCCccee---ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccceeE-eecCCCCCceEEeecc
Q 015886          191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL  262 (398)
Q Consensus       191 L~l~~~~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  262 (398)
                      |++.+|..+..+   .+..+++|+.|++.+|. +..+.    ...++|++|+++++....... .+..+++|+.|+++++
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence            777766444333   23345666667666662 22221    134566666666555211111 1233566666666665


Q ss_pred             CCchHHHhh--hhcCCCCCcEEeccCcccc----cccc---ccccccceEeccccccce---eccccCCCcceEEEec
Q 015886          263 PIEDEWLCN--GISKLPLLEYLSMTKCHKL----TSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHG  328 (398)
Q Consensus       263 ~~~~~~~~~--~~~~~~~L~~L~l~~c~~~----~~~~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~  328 (398)
                      .+.......  .....+.++.+++..+...    ..++   ..+++|+.|+++++..-.   .+...+++|+.+.+.+
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~  310 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT  310 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence            544311110  1123445555555553111    1111   134556666665554321   1123455666666655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.18  E-value=3.3e-12  Score=116.35  Aligned_cols=206  Identities=16%  Similarity=0.068  Sum_probs=137.4

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCH-----HHHHHH--HhcCccccEEEeeecCCccee--e--cCCC
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADD-----QAIASL--ISGCPLIEYLEIRSCEGLESL--D--LVNL  207 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~-----~~l~~l--~~~cp~Le~L~l~~~~~~~~~--~--i~~~  207 (398)
                      ++|+.|++.++.+..+...  ...|+.|+|+++.+..     ......  ...+++|++|++++|.....+  .  +..+
T Consensus        43 ~~L~~l~l~~n~l~~p~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           43 RSLEYLLKRVDTEADLGQF--TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             EECTTHHHHCCTTCCCHHH--HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CCceeEeecccccccHHHH--HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            4566667777666222111  1238888888777622     111111  236899999999998654322  2  2567


Q ss_pred             CCCceEEEecCCCcceee---ecc-----cCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchH-HH-hhh-hcC
Q 015886          208 SNLKEIILVNTSDIKRVE---IKT-----SNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDE-WL-CNG-ISK  275 (398)
Q Consensus       208 ~~L~~L~l~~~~~l~~~~---~~~-----p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~-~~~-~~~  275 (398)
                      ++|+.|+++++ .+..+.   ...     ++|++|+++++...... ..++.+++|++|+++++.+... .+ ..+ +..
T Consensus       121 ~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            99999999998 222221   122     89999999998733322 3567899999999999986553 22 222 278


Q ss_pred             CCCCcEEeccCccccc---cccc----cccccceEeccccccce----eccccCCCcceEEEeccce----eeccccccc
Q 015886          276 LPLLEYLSMTKCHKLT---SVRI----SSPCLKTLILECCDKLI----QVEIETPNLSIFKYHGDLI----SFSSNALSL  340 (398)
Q Consensus       276 ~~~L~~L~l~~c~~~~---~~~~----~~~~L~~L~l~~c~~~~----~~~~~~p~L~~l~~~~~~~----~~~~~~~~L  340 (398)
                      +++|+.|+++++. ++   .+..    .+++|++|+++++....    ......++|+.|.++++..    ..+.  ++|
T Consensus       200 l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L  276 (312)
T 1wwl_A          200 FPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKL  276 (312)
T ss_dssp             CTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEE
T ss_pred             CCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCc
Confidence            9999999999973 33   2222    45899999999987653    2224468999999999877    2222  799


Q ss_pred             cceeeeeccc
Q 015886          341 SETSLCFSSH  350 (398)
Q Consensus       341 ~~l~i~~~~~  350 (398)
                      ++++++.+..
T Consensus       277 ~~L~Ls~N~l  286 (312)
T 1wwl_A          277 SVLDLSYNRL  286 (312)
T ss_dssp             EEEECCSSCC
T ss_pred             eEEECCCCCC
Confidence            9999977754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.18  E-value=3.6e-11  Score=104.95  Aligned_cols=166  Identities=18%  Similarity=0.142  Sum_probs=75.2

Q ss_pred             CeeEEEEeccccCCC--CccccCcccceEEEEEEE-eCHHHHHHHHhcCccccEEEeeecCCcceee---cCCCCCCceE
Q 015886          140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEI  213 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---i~~~~~L~~L  213 (398)
                      +|++|+++++.+...  ..+..+++|++|+++++. ++.-. ...+..+++|+.|++.+|..+..+.   +..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            566666666655432  234456666666666664 31100 0113455666666666533333332   2234556666


Q ss_pred             EEecCCCcceee--ecccCce---EEEEeee-ecccee-EeecCCCCCc-eEEeeccCCchHHHhhhhcCCCCCcEEecc
Q 015886          214 ILVNTSDIKRVE--IKTSNVN---ALAIHQT-YLFPIE-VNVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEYLSMT  285 (398)
Q Consensus       214 ~l~~~~~l~~~~--~~~p~L~---~l~l~~~-~~~~~~-~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  285 (398)
                      ++.++ .+..++  ...++|+   +|+++++ ...... ..+..+++|+ .|+++++.+..- ....+.. ++|+.|+++
T Consensus       111 ~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEECT
T ss_pred             eCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEcC
Confidence            66555 111111  1333444   5555554 211111 1234555565 666655554421 1111222 456666665


Q ss_pred             Cccccccccc----cc-cccceEeccccc
Q 015886          286 KCHKLTSVRI----SS-PCLKTLILECCD  309 (398)
Q Consensus       286 ~c~~~~~~~~----~~-~~L~~L~l~~c~  309 (398)
                      ++..++.++.    .+ ++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCc
Confidence            5533333322    23 455555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.16  E-value=2.5e-11  Score=108.37  Aligned_cols=136  Identities=15%  Similarity=0.153  Sum_probs=77.2

Q ss_pred             cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--e
Q 015886          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (398)
Q Consensus       128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~  203 (398)
                      ...+|..+  .++|++|+++++.+...  .....+++|++|+++++.+..-.. ..+..+++|+.|+++++......  .
T Consensus        19 l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhh
Confidence            34455543  25688888888876533  356677888888888776632111 12456778888888776432211  2


Q ss_pred             cCCCCCCceEEEecCC--Ccceee-ecccCceEEEEeeeeccc--eeEeecCCCCCceEEeeccCCch
Q 015886          204 LVNLSNLKEIILVNTS--DIKRVE-IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIED  266 (398)
Q Consensus       204 i~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~  266 (398)
                      +..+++|+.|.+.++.  .+.... ..+++|++|+++++....  ....+..+++|++|+++++.+..
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            3446777777777661  111111 145566666666555221  12244556666666666665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.16  E-value=3.1e-10  Score=112.45  Aligned_cols=197  Identities=16%  Similarity=0.054  Sum_probs=133.9

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      .++++.|+++.+..  ..+|.   ..++|++|++++|.+...+.  .+++|+.|++++|.++.     +-...++|+.|+
T Consensus        80 l~~L~~L~Ls~N~l--~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~  147 (622)
T 3g06_A           80 PPELRTLEVSGNQL--TSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-----LPVLPPGLQELS  147 (622)
T ss_dssp             CTTCCEEEECSCCC--SCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEE
T ss_pred             CCCCCEEEcCCCcC--CcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-----CCCCCCCCCEEE
Confidence            36999999987543  35665   56899999999998765333  67788888888776632     112347788888


Q ss_pred             eeecCCcc---------eeec---------CCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCC
Q 015886          193 IRSCEGLE---------SLDL---------VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNL  254 (398)
Q Consensus       193 l~~~~~~~---------~~~i---------~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L  254 (398)
                      +++|....         .+.+         ..+++|+.|++++| .+..+....++|+.|+++++.....   -..+++|
T Consensus       148 Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l---~~~~~~L  223 (622)
T 3g06_A          148 VSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSL---PALPSGL  223 (622)
T ss_dssp             CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSC---CCCCTTC
T ss_pred             CcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCCCCccchhhEEECcCCccccc---CCCCCCC
Confidence            87763221         1100         11256666666665 3333433456777777776652211   1235889


Q ss_pred             ceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccccccccceEeccccccc--eeccccCCCcceEEEeccce
Q 015886          255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI  331 (398)
Q Consensus       255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~  331 (398)
                      +.|+++++.+..     +...+++|+.|+++++ .++.++..+++|++|++++|...  ......+++|+.|.+.++..
T Consensus       224 ~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          224 KELIVSGNRLTS-----LPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             CEEEccCCccCc-----CCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            999999988765     2266799999999997 56677778889999999998654  22346778999999988776

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.16  E-value=5.6e-11  Score=105.82  Aligned_cols=79  Identities=22%  Similarity=0.127  Sum_probs=42.0

Q ss_pred             CCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~  214 (398)
                      ++|++|+++++.+...  ..+..+++|++|+|+++.++.-. ...+..+++|+.|++.++......  .+..+++|+.|.
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            5677777777766543  24556677777777766552110 112345666666666665322110  122345555555


Q ss_pred             EecC
Q 015886          215 LVNT  218 (398)
Q Consensus       215 l~~~  218 (398)
                      +.++
T Consensus       116 l~~n  119 (270)
T 2o6q_A          116 LDRN  119 (270)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.16  E-value=2.8e-11  Score=110.08  Aligned_cols=202  Identities=18%  Similarity=0.226  Sum_probs=128.6

Q ss_pred             ChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccc--cCCCCeeEEEEeccccCCC------CccccCcccceEEEEEE
Q 015886          100 NASLAGRCLGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREV  171 (398)
Q Consensus       100 ~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~  171 (398)
                      ....+..........++++|+++.+.. ....|..+  ...++|++|+++++.+...      .....+++|++|+|+++
T Consensus        77 ~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           77 PAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             BHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred             CHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence            344555556666667899999987532 23444444  6789999999999988643      12236899999999999


Q ss_pred             EeCHHHHHHHHhcCccccEEEeeecCCcce------eecCCCCCCceEEEecCCCcceee-------ecccCceEEEEee
Q 015886          172 CADDQAIASLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNTSDIKRVE-------IKTSNVNALAIHQ  238 (398)
Q Consensus       172 ~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~------~~i~~~~~L~~L~l~~~~~l~~~~-------~~~p~L~~l~l~~  238 (398)
                      .+.... ...+..+++|+.|++++|.....      .....+++|+.|++++| .+..+.       ...++|++|++++
T Consensus       156 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          156 HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred             Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC
Confidence            883221 12356789999999999975421      22345789999999988 332221       2457788888877


Q ss_pred             eeccce-eEeecCC---CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccc--ccccccccceEeccccc
Q 015886          239 TYLFPI-EVNVSSC---GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VRISSPCLKTLILECCD  309 (398)
Q Consensus       239 ~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~--~~~~~~~L~~L~l~~c~  309 (398)
                      +..... ...+..+   ++|++|+++++.+..  +...+  +++|+.|+++++. ++.  ....+++|+.|++++..
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence            762221 1223333   678888887777652  11111  3677777777752 222  22345666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.16  E-value=3.9e-11  Score=101.51  Aligned_cols=146  Identities=18%  Similarity=0.230  Sum_probs=79.7

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|+++.+...  .+| .+..+++|++|++++|.+...+....+++|++|+++++.+++..... +..+|+|+.|++
T Consensus        44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEe
Confidence            46777777653322  344 35566777777777775555455556667777777666654322222 345666666666


Q ss_pred             eecCCcc--eeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhh
Q 015886          194 RSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (398)
Q Consensus       194 ~~~~~~~--~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  271 (398)
                      ++|....  .-.+..+++|+.|++++|..+..+.                     .+..+++|+.|+++++.+.+..   
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---------------------~l~~l~~L~~L~l~~n~i~~~~---  175 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---------------------PLKTLPELKSLNIQFDGVHDYR---  175 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---------------------GGGGCSSCCEEECTTBCCCCCT---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---------------------hhcCCCCCCEEECCCCCCcChH---
Confidence            6654332  1123334555555555552122221                     3455666666666666655421   


Q ss_pred             hhcCCCCCcEEeccCc
Q 015886          272 GISKLPLLEYLSMTKC  287 (398)
Q Consensus       272 ~~~~~~~L~~L~l~~c  287 (398)
                      .+..+++|+.|++++.
T Consensus       176 ~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             TGGGCSSCCEEEECBC
T ss_pred             HhccCCCCCEEEeeCc
Confidence            3455666777766663

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.16  E-value=1.3e-11  Score=115.88  Aligned_cols=197  Identities=16%  Similarity=0.119  Sum_probs=130.2

Q ss_pred             CCCeEEEEEecCCc--cccCCccc-------cCCCCeeEEEEeccccCCC------CccccCcccceEEEEEEEeCHHH-
Q 015886          114 SEVKELVLVHWRSE--RRNLPEII-------FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQA-  177 (398)
Q Consensus       114 ~~l~~L~l~~~~~~--~~~l~~~~-------~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~~~~~~-  177 (398)
                      ++++.|+++.+...  ...+|..+       ..+++|++|+|+++.+...      .....+++|+.|+|++|.+++.. 
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  139 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  139 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence            47888888764221  11233332       5678899999998887652      24466788999999988885443 


Q ss_pred             --HHHHHhcC---------ccccEEEeeecCCc-cee-----ecCCCCCCceEEEecCCCcc--------e-eeecccCc
Q 015886          178 --IASLISGC---------PLIEYLEIRSCEGL-ESL-----DLVNLSNLKEIILVNTSDIK--------R-VEIKTSNV  231 (398)
Q Consensus       178 --l~~l~~~c---------p~Le~L~l~~~~~~-~~~-----~i~~~~~L~~L~l~~~~~l~--------~-~~~~~p~L  231 (398)
                        +...+..+         +.|+.|++++|... ..+     .+..+++|+.|.+.+|. +.        . ....+++|
T Consensus       140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCc
Confidence              33334444         88999999887543 111     22346789999998882 22        1 12257889


Q ss_pred             eEEEEeeeec-----cceeEeecCCCCCceEEeeccCCchHHHh---hhhc--CCCCCcEEeccCccccc----cccc--
Q 015886          232 NALAIHQTYL-----FPIEVNVSSCGNLKCLKFDFLPIEDEWLC---NGIS--KLPLLEYLSMTKCHKLT----SVRI--  295 (398)
Q Consensus       232 ~~l~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~--~~~~L~~L~l~~c~~~~----~~~~--  295 (398)
                      ++|+++++..     ......+..+++|++|+++++.+.+....   ..+.  .+++|+.|++++|..-.    .++.  
T Consensus       219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            9999988772     22223467889999999999988775433   3332  38999999999974322    1333  


Q ss_pred             --cccccceEeccccccc
Q 015886          296 --SSPCLKTLILECCDKL  311 (398)
Q Consensus       296 --~~~~L~~L~l~~c~~~  311 (398)
                        .+++|++|++++|...
T Consensus       299 ~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          299 DEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHCTTCCEEECTTSBSC
T ss_pred             HhcCCCceEEEccCCcCC
Confidence              3588899988887753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.15  E-value=4.1e-11  Score=106.83  Aligned_cols=39  Identities=28%  Similarity=0.220  Sum_probs=18.7

Q ss_pred             ccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEe
Q 015886          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA  173 (398)
Q Consensus       135 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~  173 (398)
                      +..+++|++|+++++.+...+....+++|++|+|+++.+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l   97 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL   97 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC
T ss_pred             cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc
Confidence            334455555555555444333344444555555544443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.15  E-value=1.1e-11  Score=110.47  Aligned_cols=182  Identities=18%  Similarity=0.148  Sum_probs=128.6

Q ss_pred             CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~  214 (398)
                      ..++|+.|.+.++.+...+....+++|+.|+++++.+.+-  . -+..+++|+.|++.+|......  .+..+++|+.|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3577888999988877666778899999999999888432  1 3678899999999988543222  145578999999


Q ss_pred             EecCCCcceee----ecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccc
Q 015886          215 LVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK  289 (398)
Q Consensus       215 l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  289 (398)
                      +.+| .+..+.    ..+++|++|+++++...... ..++.+++|+.|+++++.+... ....+..+++|+.|+++++. 
T Consensus       116 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-  192 (272)
T 3rfs_A          116 LVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ-  192 (272)
T ss_dssp             CTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred             CCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCc-
Confidence            9988 233332    25689999999988632221 1257789999999998887642 23345678999999999973 


Q ss_pred             ccccc----ccccccceEeccccccceeccccCCCcceEEEec
Q 015886          290 LTSVR----ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHG  328 (398)
Q Consensus       290 ~~~~~----~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~  328 (398)
                      ++.+.    ..+++|++|++++++..    ..+|+|+.+...+
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~~  231 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWI  231 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHHH
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHHH
Confidence            33332    25789999999988654    3355666655443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.15  E-value=8.7e-11  Score=102.51  Aligned_cols=192  Identities=13%  Similarity=0.112  Sum_probs=126.8

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccc-cCCC--CccccCcccceEEEEE-EEeCHHHHHHHHhcCccc
Q 015886          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCK-LQQP--SENVKLFSLRKLALRE-VCADDQAIASLISGCPLI  188 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-l~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~L  188 (398)
                      .++++|+++.+.  ...++. .+..+++|++|+++++. +...  ..+..+++|++|++++ +.+..-. ...+..+++|
T Consensus        31 ~~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred             CcccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence            378888888643  234454 45568899999999986 5432  3567889999999988 5553111 1224678999


Q ss_pred             cEEEeeecCCcceeecCCCCCCc---eEEEecCCCcceeee----cccCce-EEEEeeeeccceeEeecCCCCCceEEee
Q 015886          189 EYLEIRSCEGLESLDLVNLSNLK---EIILVNTSDIKRVEI----KTSNVN-ALAIHQTYLFPIEVNVSSCGNLKCLKFD  260 (398)
Q Consensus       189 e~L~l~~~~~~~~~~i~~~~~L~---~L~l~~~~~l~~~~~----~~p~L~-~l~l~~~~~~~~~~~~~~~~~L~~L~l~  260 (398)
                      +.|++.+|....--.+..+++|+   .|++.++..+..+..    .+++|+ .++++++.........-..++|+.|+++
T Consensus       108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            99999988543211244456676   999988755555543    467899 9999887632221112223789999999


Q ss_pred             ccC-CchHHHhhhhcCC-CCCcEEeccCccccccccc-cccccceEecccccc
Q 015886          261 FLP-IEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDK  310 (398)
Q Consensus       261 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~  310 (398)
                      ++. +... ....+..+ ++|+.|+++++ .++.++. .+++|+.|++.++..
T Consensus       188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT  238 (239)
T ss_dssp             TCTTCCEE-CTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred             CCCCcccC-CHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence            884 6532 22345667 99999999995 4445544 578899998887753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.14  E-value=3.9e-11  Score=110.16  Aligned_cols=226  Identities=17%  Similarity=0.062  Sum_probs=119.9

Q ss_pred             CCCeEEEEEecCCccccC-CccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      ++++.|+++.+..  ..+ +..+..+++|++|+++++.+...  .....+++|++|+++++.+..  +..  ...++|++
T Consensus        54 ~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE  127 (332)
T ss_dssp             TTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred             CCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence            3566665554321  122 22445556666666666655322  334556666666666655421  000  11256666


Q ss_pred             EEeeecCCcce--eecCCCCCCceEEEecCCC----cceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886          191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSD----IKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       191 L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~----l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      |++.++.....  -.+..+++|+.|++.++..    ...-.....+|++|+++++.......  ...++|++|+++++.+
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~--~~~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKI  205 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS--SSCSSCSCCBCCSSCC
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc--cccCCCCEEECCCCcC
Confidence            66665533211  1133456666666666521    00111111256666666555221111  1225788888887776


Q ss_pred             chHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccc--eeccccCCCcceEEEeccce-----ee
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI-----SF  333 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----~~  333 (398)
                      ..... ..+..+++|+.|+++++. ++.+.    ..+++|++|++++|...  ......+++|+.|.+.++..     ..
T Consensus       206 ~~~~~-~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          206 QAIEL-EDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             CCCCT-TSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred             CccCH-HHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhH
Confidence            54321 235567888888888863 22222    25678888888887653  12245677888888887766     11


Q ss_pred             ccc------cccccceeeeecc
Q 015886          334 SSN------ALSLSETSLCFSS  349 (398)
Q Consensus       334 ~~~------~~~L~~l~i~~~~  349 (398)
                      +..      ...|+++.+..+.
T Consensus       284 ~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          284 FCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             SSCSSCCSSSCCBSEEECCSSS
T ss_pred             ccccccccccccccceEeecCc
Confidence            111      3567777775554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.14  E-value=2.8e-10  Score=96.20  Aligned_cols=146  Identities=19%  Similarity=0.196  Sum_probs=83.8

Q ss_pred             ccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEe
Q 015886          158 VKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH  237 (398)
Q Consensus       158 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~  237 (398)
                      ..+++|+.|+++++.+.+  +. -+..+++|+.|++.+|.....-.+..+++|+.|++.+|                   
T Consensus        41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-------------------   98 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-------------------   98 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-------------------
T ss_pred             hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-------------------
Confidence            556777777777776632  11 14566777777777662211112333455555555444                   


Q ss_pred             eeecc-ceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc--cccccceEeccccccce-e
Q 015886          238 QTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI-Q  313 (398)
Q Consensus       238 ~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~-~  313 (398)
                        ... .....++.+++|+.|+++++.+.+..... +..+++|+.|++++|..++.++.  .+++|++|++++|..-. .
T Consensus        99 --~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A           99 --DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             --TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT
T ss_pred             --ccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH
Confidence              311 11224567788888888877777644433 45678888888888754544432  45677788777776431 1


Q ss_pred             ccccCCCcceEEEec
Q 015886          314 VEIETPNLSIFKYHG  328 (398)
Q Consensus       314 ~~~~~p~L~~l~~~~  328 (398)
                      ....+|+|+.|.+.+
T Consensus       176 ~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             TGGGCSSCCEEEECB
T ss_pred             HhccCCCCCEEEeeC
Confidence            223445555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.13  E-value=3.2e-10  Score=108.55  Aligned_cols=76  Identities=13%  Similarity=0.141  Sum_probs=44.9

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|+++.+...  .+| .+..+++|++|+++++.+...+  ...++|++|+++++.+..  +.. +..+++|+.|++
T Consensus       131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEEC
Confidence            47888887764332  355 4666777888888777665321  223467777776666532  111 455666666666


Q ss_pred             eecC
Q 015886          194 RSCE  197 (398)
Q Consensus       194 ~~~~  197 (398)
                      ++|.
T Consensus       203 ~~N~  206 (454)
T 1jl5_A          203 DNNS  206 (454)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            6553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.13  E-value=8.2e-11  Score=105.83  Aligned_cols=168  Identities=16%  Similarity=0.084  Sum_probs=86.2

Q ss_pred             CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEe
Q 015886          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV  216 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~  216 (398)
                      .+++|+++++.++.+...+.. -.++++.|+|+++.++.-.. ..+..++.|+.|+++++.....-....+++|+.|+++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls   85 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS   85 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred             ccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECC
Confidence            445666676666655432211 12566777776666532111 1245567777777766543221122345667777776


Q ss_pred             cCCCcceee---ecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccc
Q 015886          217 NTSDIKRVE---IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS  292 (398)
Q Consensus       217 ~~~~l~~~~---~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~  292 (398)
                      ++ .+..++   ...++|++|+++++...... ..+..+++|+.|+++++.+... ....+..+++|+.|+++++ .++.
T Consensus        86 ~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~  162 (290)
T 1p9a_G           86 HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN-NLTE  162 (290)
T ss_dssp             SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS-CCSC
T ss_pred             CC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC-cCCc
Confidence            65 222222   24556666666665522211 2345566666666666655431 1222345666666666664 2333


Q ss_pred             ccc----cccccceEeccccc
Q 015886          293 VRI----SSPCLKTLILECCD  309 (398)
Q Consensus       293 ~~~----~~~~L~~L~l~~c~  309 (398)
                      ++.    .+++|++|+++++.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCHHHhcCcCCCCEEECCCCc
Confidence            332    34566666665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.08  E-value=1.5e-10  Score=103.38  Aligned_cols=187  Identities=19%  Similarity=0.148  Sum_probs=132.4

Q ss_pred             cccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEecCCCcceee----ecccCceEE
Q 015886          161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNAL  234 (398)
Q Consensus       161 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l  234 (398)
                      ++|++|+++++.++.-.. ..+..+++|+.|++++|......  .+..+++|+.|+++++ .+..+.    ..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEE
Confidence            579999999988743221 13567899999999998443211  2455799999999988 333333    257899999


Q ss_pred             EEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccc----eEec
Q 015886          235 AIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLK----TLIL  305 (398)
Q Consensus       235 ~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~----~L~l  305 (398)
                      +++++..... ...++.+++|++|+++++.+....+...+..+++|+.|+++++. ++.+..    ..++|+    +|++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeec
Confidence            9988772221 22478899999999999988664444557789999999999973 333322    334555    7888


Q ss_pred             cccccce--eccccCCCcceEEEeccce-----eeccccccccceeeeeccc
Q 015886          306 ECCDKLI--QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       306 ~~c~~~~--~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~  350 (398)
                      +++....  ......++|+.|.+.++..     .++.+.++|++++++.+..
T Consensus       185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            8876542  1223344899999998877     4567889999999976643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.06  E-value=2.4e-10  Score=102.86  Aligned_cols=166  Identities=17%  Similarity=0.179  Sum_probs=127.0

Q ss_pred             CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEe
Q 015886          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV  216 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~  216 (398)
                      .+++|+.|+++++.+...+....+++|+.|+++++.+++-.  . +..+++|+.|++++|....--.+..+++|+.|+++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence            45789999999998876666788999999999999884322  1 78899999999998864432235667999999999


Q ss_pred             cCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc
Q 015886          217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR  294 (398)
Q Consensus       217 ~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~  294 (398)
                      +| .+..+.  ..+++|+.|+++++..... ..+..+++|+.|+++++.+.+...   +..+++|+.|+++++ .++.+.
T Consensus       121 ~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~  194 (291)
T 1h6t_A          121 HN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDLR  194 (291)
T ss_dssp             TS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBCG
T ss_pred             CC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCC-cCCCCh
Confidence            98 233332  2678999999998873332 356889999999999998876322   678999999999997 333333


Q ss_pred             --ccccccceEeccccccc
Q 015886          295 --ISSPCLKTLILECCDKL  311 (398)
Q Consensus       295 --~~~~~L~~L~l~~c~~~  311 (398)
                        ..+++|+.|+++++...
T Consensus       195 ~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          195 ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             GGTTCTTCSEEEEEEEEEE
T ss_pred             hhccCCCCCEEECcCCccc
Confidence              26789999999988653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.04  E-value=1.4e-10  Score=114.76  Aligned_cols=164  Identities=17%  Similarity=0.170  Sum_probs=85.4

Q ss_pred             CCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEec
Q 015886          138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN  217 (398)
Q Consensus       138 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~  217 (398)
                      +++|+.|+++++.+...+....+++|+.|+|+++.+.+-.-   +..+++|+.|+|++|.....-.+..+++|+.|++.+
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence            35566666666655544445556666666666665522111   455666666666665332211334456666666666


Q ss_pred             CCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc
Q 015886          218 TSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI  295 (398)
Q Consensus       218 ~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~  295 (398)
                      | .+..+.  ..+++|+.|+++++..... ..+..+++|+.|+|+++.+.....   +..+++|+.|+|++| .+..++.
T Consensus       119 N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~~  192 (605)
T 1m9s_A          119 N-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDLRA  192 (605)
T ss_dssp             S-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBCGG
T ss_pred             C-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC-CCCCChH
Confidence            5 111121  2456666666666552221 234556666666666665544211   455666666666665 2222221


Q ss_pred             --cccccceEecccccc
Q 015886          296 --SSPCLKTLILECCDK  310 (398)
Q Consensus       296 --~~~~L~~L~l~~c~~  310 (398)
                        .+++|+.|++++|..
T Consensus       193 l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             GTTCTTCSEEECCSEEE
T ss_pred             HccCCCCCEEEccCCcC
Confidence              445666666666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.01  E-value=3.5e-10  Score=100.60  Aligned_cols=168  Identities=17%  Similarity=0.145  Sum_probs=96.7

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      +++++|+++.+.  ...++. .+..+++|++|+++++.+...  ..+..+++|++|+|+++.+..-. ...+..+++|+.
T Consensus        37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred             CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence            478888887643  234544 566789999999999987644  33467999999999998873211 123567899999


Q ss_pred             EEeeecCCccee--ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeecccee-EeecCCCCCceEEeeccC
Q 015886          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLP  263 (398)
Q Consensus       191 L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~  263 (398)
                      |++.++......  .+..+++|+.|+++++ .+..+.    ..+++|++|+++++...... ..+..+++|+.|+++++.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            999987543211  2345678888888776 222222    13345555555544311111 113344455555554444


Q ss_pred             CchHHHhhhhcCCCCCcEEeccC
Q 015886          264 IEDEWLCNGISKLPLLEYLSMTK  286 (398)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~  286 (398)
                      +... ....+..+++|+.|++++
T Consensus       193 l~~~-~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          193 LKRV-PEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CSCC-CTTTTTTCTTCCEEECCS
T ss_pred             CCcC-CHHHhccccCCCEEEecC
Confidence            3321 111223344444444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.97  E-value=5e-10  Score=100.66  Aligned_cols=186  Identities=14%  Similarity=0.057  Sum_probs=121.2

Q ss_pred             CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      +++++++..  .....+|..+.  ++++.|+++++.+...  ..+..+++|+.|+|+++.++.-..   ...+++|+.|+
T Consensus        11 ~l~~l~~~~--~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~   83 (290)
T 1p9a_G           11 SHLEVNCDK--RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD   83 (290)
T ss_dssp             TCCEEECTT--SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred             CccEEECCC--CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence            455554443  23345565443  6788888888877543  456678888888888877632111   15778899999


Q ss_pred             eeecCCcce-eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCch
Q 015886          193 IRSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIED  266 (398)
Q Consensus       193 l~~~~~~~~-~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  266 (398)
                      ++++....- ..+..+++|+.|.++++ .+..+.    ...++|++|+++++...... ..+..+++|+.|+++++.+..
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            888744321 12345688999999887 333332    25678999999887632221 124678899999999888764


Q ss_pred             HHHhhhhcCCCCCcEEeccCccccccccc---cccccceEecccccc
Q 015886          267 EWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK  310 (398)
Q Consensus       267 ~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~  310 (398)
                      . ....+..+++|+.|+++++ .++.++.   ..+.|+++++.+.+.
T Consensus       163 l-~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          163 L-PAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             C-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             c-CHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence            2 2344567899999999986 3444443   345788888876654

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.95  E-value=4.1e-10  Score=72.94  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=33.8

Q ss_pred             CCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhc
Q 015886            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ   47 (398)
Q Consensus         8 ~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~   47 (398)
                      ..+.++.||+|++.+||+||+.+|+++++.|||+|+++..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4567999999999999999999999999999999997543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.93  E-value=2.9e-10  Score=105.62  Aligned_cols=204  Identities=12%  Similarity=0.071  Sum_probs=135.8

Q ss_pred             EEEeccccCCC-CccccC-cccceEEEEEEEeCHH---HHHHHHhcCc-cccEEEeeecCCcce--eecCC-----CCCC
Q 015886          144 LELSYCKLQQP-SENVKL-FSLRKLALREVCADDQ---AIASLISGCP-LIEYLEIRSCEGLES--LDLVN-----LSNL  210 (398)
Q Consensus       144 L~L~~~~l~~~-~~~~~~-~~L~~L~L~~~~~~~~---~l~~l~~~cp-~Le~L~l~~~~~~~~--~~i~~-----~~~L  210 (398)
                      ++++.+.+... +..... ++|++|+|+++.+++.   .+...+..+| .|++|++++|.....  -.+..     +++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45555555433 333344 4599999999998443   3445567888 999999999854321  11211     2899


Q ss_pred             ceEEEecCCCcceeee--------cc-cCceEEEEeeeeccceeE-e----ecC-CCCCceEEeeccCCchH---HHhhh
Q 015886          211 KEIILVNTSDIKRVEI--------KT-SNVNALAIHQTYLFPIEV-N----VSS-CGNLKCLKFDFLPIEDE---WLCNG  272 (398)
Q Consensus       211 ~~L~l~~~~~l~~~~~--------~~-p~L~~l~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~~~~~---~~~~~  272 (398)
                      ++|++++|. +.....        .. ++|++|+++++....... .    +.. .++|++|+++++.+.+.   .+...
T Consensus        83 ~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           83 TSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             cEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999993 222211        22 799999999987322111 1    233 36999999999988763   34444


Q ss_pred             hcCCC-CCcEEeccCccccccccc--------cc-cccceEeccccccce----ec---ccc-CCCcceEEEeccce---
Q 015886          273 ISKLP-LLEYLSMTKCHKLTSVRI--------SS-PCLKTLILECCDKLI----QV---EIE-TPNLSIFKYHGDLI---  331 (398)
Q Consensus       273 ~~~~~-~L~~L~l~~c~~~~~~~~--------~~-~~L~~L~l~~c~~~~----~~---~~~-~p~L~~l~~~~~~~---  331 (398)
                      +..++ +|+.|++++|. ++....        .. ++|++|++++|..-.    .+   ... .++|+.|.++++..   
T Consensus       162 l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            55566 99999999983 332221        33 599999999998642    11   122 46999999999876   


Q ss_pred             ------eeccccccccceeeeecc
Q 015886          332 ------SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       332 ------~~~~~~~~L~~l~i~~~~  349 (398)
                            ..+...++|+++.++.+.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHHHhcCCCccEEEeccCC
Confidence                  334667899999997665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.91  E-value=2.5e-09  Score=98.82  Aligned_cols=211  Identities=13%  Similarity=0.030  Sum_probs=127.4

Q ss_pred             CCCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCCC---CccccCcccceEEE-EEEEeCHHHHHHHHhcCccc
Q 015886          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP---SENVKLFSLRKLAL-REVCADDQAIASLISGCPLI  188 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  188 (398)
                      +++++|+++...  -..+|.. +..+++|++|+|+++.+...   ..+..+++|+.+.. .++.+..- ....+..+++|
T Consensus        30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred             CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence            478888888643  3456664 45678888888888875322   34456777665443 33333110 01224667888


Q ss_pred             cEEEeeecCCcce--eecCCCCCCceEEEecCCCcceeeec-----ccCceEEEEeeeeccceeEeecCCCCCceEEeec
Q 015886          189 EYLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEIK-----TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDF  261 (398)
Q Consensus       189 e~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~~~-----~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~  261 (398)
                      +.|++.++.....  .......++..|.+.++..+..+...     ...++.|+++++............++|+.|.+..
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence            8888888754321  11222356777777776555555431     2457788887776322222223446788888864


Q ss_pred             cCCchHHHhhhhcCCCCCcEEeccCccccccccc-cccccceEeccccccceecc--ccCCCcceEEEec
Q 015886          262 LPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHG  328 (398)
Q Consensus       262 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~~~~~~--~~~p~L~~l~~~~  328 (398)
                      +..........+..+++|+.|+++++ .++.++. .+.+|++|.+.++..++.+.  ...++|+.+.+..
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             CCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            33222222334567889999999986 5666655 46788888888887775543  4556777766643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.91  E-value=1.2e-09  Score=96.69  Aligned_cols=142  Identities=16%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEe
Q 015886          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV  216 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~  216 (398)
                      .+++|++|+++++.+...+....+++|+.|+|+++.+++-.-   +..+++|+.|++++|....--.+.. ++|+.|+++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~  114 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLD  114 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECC
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEEcc
Confidence            346667777776666544455566777777777666632111   5566777777777664322111222 566666666


Q ss_pred             cCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       217 ~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      +| .+..+.  ..+++|+.|+++++..... ..+..+++|+.|+++++.+.+.   ..+..+++|+.|+++++
T Consensus       115 ~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          115 NN-ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             SS-CCSBSGGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred             CC-ccCCChhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence            66 222221  1455666666666552221 1356667777777777666553   33556677777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.89  E-value=1.4e-09  Score=95.51  Aligned_cols=88  Identities=16%  Similarity=0.072  Sum_probs=48.6

Q ss_pred             cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--e
Q 015886          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (398)
Q Consensus       128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~  203 (398)
                      ...+|..+.  ++|+.|+++++.+...  .....+++|++|+|+++.+.... ...+..+++|+.|+++++......  .
T Consensus        26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~  102 (251)
T 3m19_A           26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGV  102 (251)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhH
Confidence            334554443  5677888887766544  34556777777777777663211 112345667777777665432111  1


Q ss_pred             cCCCCCCceEEEecC
Q 015886          204 LVNLSNLKEIILVNT  218 (398)
Q Consensus       204 i~~~~~L~~L~l~~~  218 (398)
                      +..+++|+.|++.++
T Consensus       103 ~~~l~~L~~L~L~~N  117 (251)
T 3m19_A          103 FDHLTQLDKLYLGGN  117 (251)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hcccCCCCEEEcCCC
Confidence            233455666666555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.88  E-value=3.7e-10  Score=99.98  Aligned_cols=164  Identities=13%  Similarity=0.070  Sum_probs=114.8

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~  218 (398)
                      .+++.+++.++.+........+++|+.|+++++.+++-.   -+..+++|+.|++++|.......+..+++|+.|+++++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            334555556655544345667899999999998874321   26788999999999885443223667899999999998


Q ss_pred             CCcceee-ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc--c
Q 015886          219 SDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--I  295 (398)
Q Consensus       219 ~~l~~~~-~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~  295 (398)
                       .+..+. ...++|+.|+++++..... ..+..+++|+.|+++++.+.+.  . .+..+++|+.|+++++. ++.+.  .
T Consensus        96 -~l~~l~~~~~~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~-i~~~~~l~  169 (263)
T 1xeu_A           96 -RLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNE-ITNTGGLT  169 (263)
T ss_dssp             -CCSCCTTCCCSSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSC-CCBCTTST
T ss_pred             -ccCCcCccccCcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCc-CcchHHhc
Confidence             222221 1228999999998873222 2478889999999999888763  2 36678999999999963 33322  2


Q ss_pred             cccccceEeccccccc
Q 015886          296 SSPCLKTLILECCDKL  311 (398)
Q Consensus       296 ~~~~L~~L~l~~c~~~  311 (398)
                      .+++|+.|+++++...
T Consensus       170 ~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TCCCCCEEEEEEEEEE
T ss_pred             cCCCCCEEeCCCCccc
Confidence            5678888888887653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.86  E-value=3.8e-09  Score=103.41  Aligned_cols=176  Identities=16%  Similarity=0.117  Sum_probs=116.2

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      ..+++.|+++.+..  ..+|..++  ++|++|++++|.+...+  ..+++|+.|+|++|.++.  +.. +.  .+|+.|+
T Consensus        58 ~~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~  126 (571)
T 3cvr_A           58 INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLD  126 (571)
T ss_dssp             HTTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEE
T ss_pred             cCCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEE
Confidence            45888888876432  34676553  78999999998887434  567899999999887743  222 22  2899999


Q ss_pred             eeecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhh
Q 015886          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (398)
Q Consensus       193 l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  272 (398)
                      +++|.... +.- .+++|+.|+++++ .+..++...++|+.|+++++....... +.  ++|+.|+++++.+..  +.. 
T Consensus       127 Ls~N~l~~-lp~-~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~-  197 (571)
T 3cvr_A          127 VDNNQLTM-LPE-LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA-  197 (571)
T ss_dssp             CCSSCCSC-CCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC-
T ss_pred             CCCCcCCC-CCC-cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh-
Confidence            98875432 322 4688999998887 333344466788888888887322222 33  788889988887763  111 


Q ss_pred             hcCCCCC-------cEEeccCccccccccc---cccccceEeccccccc
Q 015886          273 ISKLPLL-------EYLSMTKCHKLTSVRI---SSPCLKTLILECCDKL  311 (398)
Q Consensus       273 ~~~~~~L-------~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~  311 (398)
                      +.  ++|       +.|+++++ .++.++.   .+++|+.|+++++...
T Consensus       198 ~~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          198 VP--VRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             HH--HhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCC
Confidence            11  155       88888886 3344443   4678888888887764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.84  E-value=7.6e-09  Score=103.16  Aligned_cols=203  Identities=17%  Similarity=0.154  Sum_probs=115.2

Q ss_pred             ccCcccceEEEEEEEeCH-HHHHHHHhcCccccEEEeeecCCcce-eecCCCCCCceEEEecCCCcc----eeeecccCc
Q 015886          158 VKLFSLRKLALREVCADD-QAIASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEIILVNTSDIK----RVEIKTSNV  231 (398)
Q Consensus       158 ~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~~~~~~~-~~i~~~~~L~~L~l~~~~~l~----~~~~~~p~L  231 (398)
                      ..+++|+.|+++++.+.. .........++.|+.|++..+..... .....+++|+.+.+..+....    ......+++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            345566666655544311 11111123455566665554432211 112234666666666551111    111245566


Q ss_pred             eEEEEeeeecc-ceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEecc
Q 015886          232 NALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILE  306 (398)
Q Consensus       232 ~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~  306 (398)
                      +.++++.+... .....+..++.|+.|+++++..........+..+++|+.|++++| .++.+.    ..+++|+.|+|+
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls  526 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS  526 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECC
Confidence            67766655411 111234567888888888776544434455677889999999987 344432    256789999999


Q ss_pred             ccccc---eeccccCCCcceEEEeccce-----eecccc-ccccceeeeecccc-hhhHHHHHHH
Q 015886          307 CCDKL---IQVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCFSSHL-MVNIEWVVEY  361 (398)
Q Consensus       307 ~c~~~---~~~~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~l~i~~~~~~-~~~~~~~~~~  361 (398)
                      ++...   ......+++|+.|+++++..     ..+.+. ++|+.++++.+.-. .+...|+...
T Consensus       527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~w  591 (635)
T 4g8a_A          527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW  591 (635)
T ss_dssp             TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence            88643   12345678899999988876     344444 68999999666422 2455666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.84  E-value=8.7e-10  Score=90.51  Aligned_cols=127  Identities=20%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             CCeeEEEEeccccC--CC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886          139 ESLHVLELSYCKLQ--QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (398)
Q Consensus       139 ~~L~~L~L~~~~l~--~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l  215 (398)
                      ++|++|++++|.+.  .. .....+++|+.|+++++.+...   ..+..+++|+.|++++|.....              
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~--------------   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG--------------   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence            55666666666654  11 2234555566665555544221   1223334444444443322110              


Q ss_pred             ecCCCcceeeecccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCCchHHH--hhhhcCCCCCcEEeccCc
Q 015886          216 VNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       216 ~~~~~l~~~~~~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c  287 (398)
                           +......+++|++|+++++.....  ...+..+++|+.|+++++.+.....  ...+..+++|+.|++++|
T Consensus        87 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           87 -----LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             -----CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             -----HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence                 111111244445554444431111  1234566667777776665544211  234556666777766665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.83  E-value=2.1e-09  Score=94.42  Aligned_cols=145  Identities=14%  Similarity=0.120  Sum_probs=79.5

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEe
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILV  216 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~  216 (398)
                      .+.+++++.++.+...+.. -.++|+.|+|+++.+....- ..+..+++|+.|+++++......  .+..+++|+.|++.
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4567788888776543222 22689999998887732211 12567888999998887443211  13446788888887


Q ss_pred             cCCCcceee----ecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          217 NTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       217 ~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      ++ .+..+.    ...++|++|+++++....... .+..+++|+.|+++++.+.... ...+..+++|+.|+++++
T Consensus        92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             TS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCC
Confidence            76 222222    134556666665554221111 1344555666666555544211 112344555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.82  E-value=1.3e-08  Score=93.91  Aligned_cols=213  Identities=17%  Similarity=0.146  Sum_probs=112.2

Q ss_pred             ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-
Q 015886          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD-  203 (398)
Q Consensus       127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~-  203 (398)
                      ....+|..+  .+++++|+|+++.+...  ..+..+++|++|+|+++.+....-...+.+++.|+++.+.++..+..+. 
T Consensus        20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            334555544  25677777777766433  2356677777777777754111001123456666666555555554442 


Q ss_pred             --cCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccc-e-eEeecCC-CCCceEEeeccCCchHHHhhhhc
Q 015886          204 --LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFP-I-EVNVSSC-GNLKCLKFDFLPIEDEWLCNGIS  274 (398)
Q Consensus       204 --i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~-~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~  274 (398)
                        +..+++|+.|.+.++ .+..+.    ....++..+++.+..... . ...+..+ ..++.|+++++.+..-  .....
T Consensus        98 ~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~~~f  174 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--HNSAF  174 (350)
T ss_dssp             TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTSS
T ss_pred             hhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--Chhhc
Confidence              344577777777776 122111    234456666665543111 0 0112233 3567777777766431  11112


Q ss_pred             CCCCCcEEeccCccccccccc----cccccceEeccccccceecc-ccCCCcceEEEeccce----eeccccccccceee
Q 015886          275 KLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI----SFSSNALSLSETSL  345 (398)
Q Consensus       275 ~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~~~~~-~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i  345 (398)
                      ..++|+.|.+.++..++.++.    .+++|+.|+++++.. ..+. ....+|+.|...+...    ..+.+.++|+.+.+
T Consensus       175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence            345677777776656665553    456777777777643 2222 2234566655554433    33445556666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.76  E-value=5.9e-10  Score=89.59  Aligned_cols=37  Identities=30%  Similarity=0.388  Sum_probs=16.9

Q ss_pred             CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      +++|++|+++++.+.+......+..+++|+.|+++++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            4445555555444443222233444555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.75  E-value=4.5e-09  Score=89.47  Aligned_cols=87  Identities=20%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             ccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ec
Q 015886          129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL  204 (398)
Q Consensus       129 ~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i  204 (398)
                      ..+|..+  .++|++|+++++.+...  ..+..+++|++|+++++.+..- ....+..+++|+.|++.++......  .+
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence            3444433  35778888888776543  2345677777777777765311 1122355677777777665322111  12


Q ss_pred             CCCCCCceEEEecC
Q 015886          205 VNLSNLKEIILVNT  218 (398)
Q Consensus       205 ~~~~~L~~L~l~~~  218 (398)
                      ..+++|+.|++.++
T Consensus        97 ~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           97 DKLTQLKELALNTN  110 (208)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cCccCCCEEEcCCC
Confidence            33455666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.73  E-value=7.6e-09  Score=84.82  Aligned_cols=104  Identities=26%  Similarity=0.221  Sum_probs=78.4

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|+++.+......+|..+..+++|++|++++|.+........+++|+.|++++|.+... +...+..+|+|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence            479999998865443477877788899999999999887656677899999999999998442 4455667999999999


Q ss_pred             eecCCcce---eecCCCCCCceEEEecC
Q 015886          194 RSCEGLES---LDLVNLSNLKEIILVNT  218 (398)
Q Consensus       194 ~~~~~~~~---~~i~~~~~L~~L~l~~~  218 (398)
                      ++|.....   -.+..+++|+.|++.+|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            98854321   13344567777777666

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.71  E-value=3e-08  Score=97.08  Aligned_cols=175  Identities=12%  Similarity=0.033  Sum_probs=120.2

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~  218 (398)
                      .+|+.|+++++.+...+.. -+++|+.|+|++|.++.  +.   ..+++|+.|++++|.... +..- ..+|+.|+++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~l-~~~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDN-LPPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPEL-PASLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSC-CCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHh-HcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cchh-hcCCCEEECCCC
Confidence            4899999999987653322 25899999999998852  22   457999999999884432 3221 148999999988


Q ss_pred             CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccccccc
Q 015886          219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSP  298 (398)
Q Consensus       219 ~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~  298 (398)
                       .+..++...++|+.|+++++......   ..+++|+.|++++|.+..  +.. +.  ++|+.|+++++ .++.++.-.+
T Consensus       131 -~l~~lp~~l~~L~~L~Ls~N~l~~lp---~~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N-~L~~lp~~~~  200 (571)
T 3cvr_A          131 -QLTMLPELPALLEYINADNNQLTMLP---ELPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTN-LLESLPAVPV  200 (571)
T ss_dssp             -CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSS-CCSSCCCCC-
T ss_pred             -cCCCCCCcCccccEEeCCCCccCcCC---CcCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCC-CCCchhhHHH
Confidence             33333336789999999988732211   156899999999988765  222 22  89999999996 4445544223


Q ss_pred             cc-------ceEeccccccc--eeccccCCCcceEEEeccce
Q 015886          299 CL-------KTLILECCDKL--IQVEIETPNLSIFKYHGDLI  331 (398)
Q Consensus       299 ~L-------~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~  331 (398)
                      +|       +.|+++++..-  ..-...+++|+.|.+.++..
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence            66       88999887653  22234477888888888766

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.67  E-value=2.6e-08  Score=81.23  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=75.5

Q ss_pred             cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEE-eCHHHHHHHHhc---CccccEEEeeecCCcce
Q 015886          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISG---CPLIEYLEIRSCEGLES  201 (398)
Q Consensus       128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~~~~~~~  201 (398)
                      ...+|......-.|++|++++|.+...  .....|++|+.|+|++|. ++|.++..+...   |+.|++|+|++|..++.
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            345666444556799999999987654  445689999999999997 599999987763   78999999999987753


Q ss_pred             e---ecCCCCCCceEEEecCCCccee
Q 015886          202 L---DLVNLSNLKEIILVNTSDIKRV  224 (398)
Q Consensus       202 ~---~i~~~~~L~~L~l~~~~~l~~~  224 (398)
                      -   .+..+++|++|++++|+.+...
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCCch
Confidence            2   2445799999999999766553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=2.2e-08  Score=92.41  Aligned_cols=132  Identities=17%  Similarity=0.127  Sum_probs=85.6

Q ss_pred             HHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCC----cceeee-cccCceEEEEeeee--c--cc-e--
Q 015886          177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD----IKRVEI-KTSNVNALAIHQTY--L--FP-I--  244 (398)
Q Consensus       177 ~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~----l~~~~~-~~p~L~~l~l~~~~--~--~~-~--  244 (398)
                      .+..++..+|+|++|.|.++.+..-..+. .++|++|.+..|..    +..+.. .+|+|++|+++...  .  .. .  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            45677889999999999987443322233 58999999987721    111221 57999999986321  0  10 0  


Q ss_pred             ---eEeecCCCCCceEEeeccCCchHHHhhhh--cCCCCCcEEeccCccccccc-----c---ccccccceEecccccc
Q 015886          245 ---EVNVSSCGNLKCLKFDFLPIEDEWLCNGI--SKLPLLEYLSMTKCHKLTSV-----R---ISSPCLKTLILECCDK  310 (398)
Q Consensus       245 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~~-----~---~~~~~L~~L~l~~c~~  310 (398)
                         ......+|+|+.|++.++.+.+.....+.  ..+|+|++|+|+.+ .+++.     .   ..+++|+.|++++|..
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence               11124589999999998888765444433  35789999999775 34332     2   1357788888877753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.65  E-value=7.9e-09  Score=82.90  Aligned_cols=104  Identities=30%  Similarity=0.310  Sum_probs=75.1

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      +++++|+++.+......+|..+..+++|++|++++|.+........+++|+.|+++++.++.. +...+..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            478888887754433467777778899999999998876656677788999999999888432 4455667889999999


Q ss_pred             eecCCcce---eecCCCCCCceEEEecC
Q 015886          194 RSCEGLES---LDLVNLSNLKEIILVNT  218 (398)
Q Consensus       194 ~~~~~~~~---~~i~~~~~L~~L~l~~~  218 (398)
                      ++|.....   -.+..+++|+.|++++|
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            88754321   22444577777777766

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.61  E-value=1.3e-08  Score=86.49  Aligned_cols=158  Identities=13%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             EEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee---cCCCCCCceEEEecCC
Q 015886          143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEIILVNTS  219 (398)
Q Consensus       143 ~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---i~~~~~L~~L~l~~~~  219 (398)
                      .++..+..+...+ ....++|++|+++++.++.-. ...+..+++|++|++.++... .+.   +..+++|++|+++++ 
T Consensus        11 ~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n-   86 (208)
T 2o6s_A           11 TVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN-   86 (208)
T ss_dssp             EEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-
T ss_pred             EEEecCCCccCCC-CCCCCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC-
Confidence            4455554443222 223568999999998774211 123567899999999887433 222   344678888888877 


Q ss_pred             Ccceee----ecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc
Q 015886          220 DIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR  294 (398)
Q Consensus       220 ~l~~~~----~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~  294 (398)
                      .+..+.    ...++|++|+++++....... .+..+++|+.|+++++.+... ....+..+++|+.|++++++-    .
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~----~  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPW----D  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCB----C
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCe----e
Confidence            222222    245677777777665222111 245567777777776665431 122345567777777766421    1


Q ss_pred             ccccccceEeccccc
Q 015886          295 ISSPCLKTLILECCD  309 (398)
Q Consensus       295 ~~~~~L~~L~l~~c~  309 (398)
                      -.++.|+.|+++.+.
T Consensus       162 ~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          162 CTCPGIRYLSEWINK  176 (208)
T ss_dssp             CCTTTTHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHh
Confidence            234455555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.53  E-value=2.7e-07  Score=85.19  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=96.3

Q ss_pred             hCCCeEEEEEecCCc--------cccCCccccCCCCeeEEEEeccc-cCCCCccccCcccceEEEEEEEeCHHHHHHHHh
Q 015886          113 ESEVKELVLVHWRSE--------RRNLPEIIFYVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLIS  183 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~--------~~~l~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~  183 (398)
                      .++|++|.+......        ...+...+..+++|++|.+.++. +..++  ...++|+.|.|..+.++++.+..+..
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHH
Confidence            469999988542111        11244455678999999998873 32222  34899999999988888888877653


Q ss_pred             -cCccccEEEeeecCC-------cce----eecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCC
Q 015886          184 -GCPLIEYLEIRSCEG-------LES----LDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSC  251 (398)
Q Consensus       184 -~cp~Le~L~l~~~~~-------~~~----~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~  251 (398)
                       .+|+|+.|+|..+..       +..    +....+|+|+.|.+.+|......                 .......+.+
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-----------------~~~la~a~~~  278 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-----------------VEMFLESDIL  278 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-----------------HHHHHHCSSG
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-----------------HHHHHhCccC
Confidence             799999999864211       100    11112455555555544211000                 0001112457


Q ss_pred             CCCceEEeeccCCchHHHhhhh---cCCCCCcEEeccCc
Q 015886          252 GNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKC  287 (398)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c  287 (398)
                      |+|++|+|+++.+.+.....+.   ..+++|+.|+++.|
T Consensus       279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            8888888888888776544443   45788888888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.52  E-value=5.5e-08  Score=79.33  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=57.8

Q ss_pred             CceEEEEeeeecc-ceeEeecCCCCCceEEeeccC-CchHHHhhhhcC---CCCCcEEeccCccccccccc----ccccc
Q 015886          230 NVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISK---LPLLEYLSMTKCHKLTSVRI----SSPCL  300 (398)
Q Consensus       230 ~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~c~~~~~~~~----~~~~L  300 (398)
                      +|++++++++... .....+..+++|++|+|++|. +++..+..+...   +++|++|+|++|..+++-+.    .+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            4666666666511 111234678888888888774 777777776542   56888888888887776554    57888


Q ss_pred             ceEeccccccce
Q 015886          301 KTLILECCDKLI  312 (398)
Q Consensus       301 ~~L~l~~c~~~~  312 (398)
                      ++|+|++|+.++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            888888888763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.52  E-value=3.7e-08  Score=81.40  Aligned_cols=38  Identities=8%  Similarity=-0.103  Sum_probs=19.5

Q ss_pred             cCCCCeeEEEEeccccCCCCccccC-cccceEEEEEEEe
Q 015886          136 FYVESLHVLELSYCKLQQPSENVKL-FSLRKLALREVCA  173 (398)
Q Consensus       136 ~~~~~L~~L~L~~~~l~~~~~~~~~-~~L~~L~L~~~~~  173 (398)
                      ..+.+|++|+++++.+...+....+ ++|+.|+++++.+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l   54 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI   54 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC
Confidence            3456677777777665533222222 2555555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.50  E-value=8.8e-08  Score=82.74  Aligned_cols=135  Identities=15%  Similarity=0.144  Sum_probs=74.3

Q ss_pred             ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-
Q 015886          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD-  203 (398)
Q Consensus       127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~-  203 (398)
                      ....+|..+  .++|++|+++++.+...  ..+..+++|+.|+|+++.+..-. ...+..+++|+.|++++|... .+. 
T Consensus        30 ~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~-~l~~  105 (229)
T 3e6j_A           30 RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLT-VLPS  105 (229)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCC-ccCh
Confidence            344555543  26788888888776543  34556777777777777662111 112355677777777666322 111 


Q ss_pred             --cCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcE
Q 015886          204 --LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (398)
Q Consensus       204 --i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  281 (398)
                        +..+++|+.|++.++                     ........+..+++|+.|+++++.+.... ...+..+++|+.
T Consensus       106 ~~~~~l~~L~~L~Ls~N---------------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~  163 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCN---------------------KLTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTH  163 (229)
T ss_dssp             TTTTTCTTCCEEECCSS---------------------CCCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             hHhCcchhhCeEeccCC---------------------cccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCE
Confidence              223455555555554                     31111223455667777777766654321 133455677777


Q ss_pred             EeccCc
Q 015886          282 LSMTKC  287 (398)
Q Consensus       282 L~l~~c  287 (398)
                      |++.++
T Consensus       164 L~l~~N  169 (229)
T 3e6j_A          164 AYLFGN  169 (229)
T ss_dssp             EECTTS
T ss_pred             EEeeCC
Confidence            777763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.50  E-value=4.5e-07  Score=90.23  Aligned_cols=128  Identities=13%  Similarity=0.011  Sum_probs=83.1

Q ss_pred             cccCceEEEEeeee--ccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----cccccc
Q 015886          227 KTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCL  300 (398)
Q Consensus       227 ~~p~L~~l~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L  300 (398)
                      ..++|+.+++.++.  .......+..+++++.++++.+.+... ....+..+++|+.|+++++.....+.    ..+++|
T Consensus       418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             ccccccchhhhhccccccccccccccccccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence            34455555554433  111112345566777777776655432 12345677899999999875444322    356899


Q ss_pred             ceEeccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeecccchhhH
Q 015886          301 KTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNI  355 (398)
Q Consensus       301 ~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~  355 (398)
                      +.|++++|....   .....+++|+.|.++++..     ..+.++++|+.++++.+......+
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            999999996542   2346678999999999876     567788999999997775544433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.48  E-value=1.3e-08  Score=85.81  Aligned_cols=145  Identities=17%  Similarity=0.125  Sum_probs=74.6

Q ss_pred             CeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeee
Q 015886          116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRS  195 (398)
Q Consensus       116 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~  195 (398)
                      ++...+....+....+|..+..+++|++|+++++.+...+....+++|+.|+++++.+..  +...+..+|+|+.|++++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcC
Confidence            344444332223333444556667777777777766544455566777777777776641  222334456666666666


Q ss_pred             cCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCCchH------
Q 015886          196 CEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDE------  267 (398)
Q Consensus       196 ~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~------  267 (398)
                      |....--.+.                     .+++|+.|+++++.....  ...+..+++|++|+++++.+...      
T Consensus       103 N~l~~l~~~~---------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  161 (198)
T 1ds9_A          103 NQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA  161 (198)
T ss_dssp             EECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT
T ss_pred             CcCCcCCccc---------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccc
Confidence            5221100011                     234455555554441111  11345667777777776655332      


Q ss_pred             ---HHhhhhcCCCCCcEEe
Q 015886          268 ---WLCNGISKLPLLEYLS  283 (398)
Q Consensus       268 ---~~~~~~~~~~~L~~L~  283 (398)
                         .....+..+++|+.|+
T Consensus       162 ~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          162 TSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHHHCSSCSEEC
T ss_pred             hHHHHHHHHHhCCCcEEEC
Confidence               1223355677777776

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.45  E-value=7.6e-08  Score=82.61  Aligned_cols=56  Identities=18%  Similarity=0.109  Sum_probs=26.7

Q ss_pred             CeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeec
Q 015886          140 SLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC  196 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~  196 (398)
                      .+++|+++++.+...   ..+..+++|+.|+|+++.++.-. ...+..+++|+.|+++++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCC
Confidence            456666666655422   12345566666666555442110 011334455555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.44  E-value=1.2e-08  Score=94.94  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             cCCCCCceEEeeccCCchHHHh---hhhcCCCCCcEEeccCc
Q 015886          249 SSCGNLKCLKFDFLPIEDEWLC---NGISKLPLLEYLSMTKC  287 (398)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~c  287 (398)
                      ...++|++|+|++|.+++....   ..+..+++|+.|+|+++
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            3445566666666666553322   22334466666666664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.43  E-value=1.4e-07  Score=80.97  Aligned_cols=135  Identities=14%  Similarity=0.130  Sum_probs=70.1

Q ss_pred             ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-
Q 015886          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD-  203 (398)
Q Consensus       127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~-  203 (398)
                      ....+|..+.  ++|+.|+++++.+...  ..+..+++|+.|+|+++.++.-. ...+..+++|+.|+++++... .+. 
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~-~l~~   97 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKIT-ELPK   97 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCC-ccCH
Confidence            3344555443  5678888887766433  24556777777777776653211 111345666666666665322 111 


Q ss_pred             --cCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcE
Q 015886          204 --LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (398)
Q Consensus       204 --i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  281 (398)
                        +..+++|+.|++.++ .+..+.                   ...+..+++|+.|+++++.+.... ...+..+++|+.
T Consensus        98 ~~f~~l~~L~~L~L~~N-~l~~~~-------------------~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~  156 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNAN-KINCLR-------------------VDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQT  156 (220)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCC-------------------TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE
T ss_pred             hHccCCCCCCEEECCCC-CCCEeC-------------------HHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCE
Confidence              223445555555544 111111                   113455666666666666654421 122445667777


Q ss_pred             EeccC
Q 015886          282 LSMTK  286 (398)
Q Consensus       282 L~l~~  286 (398)
                      |++++
T Consensus       157 L~L~~  161 (220)
T 2v9t_B          157 MHLAQ  161 (220)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            77766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.42  E-value=1.7e-07  Score=86.86  Aligned_cols=153  Identities=20%  Similarity=0.229  Sum_probs=83.9

Q ss_pred             cccCCccccCCCCeeEEEEeccccCCC--Cccc-cCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--
Q 015886          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--  202 (398)
Q Consensus       128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--  202 (398)
                      ...+|..+.  +.++.|+|+++.+...  ..+. .+++|+.|+|+++.++.-.- ..+..+++|+.|+|+++.. ..+  
T Consensus        30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l-~~~~~  105 (361)
T 2xot_A           30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHL-HTLDE  105 (361)
T ss_dssp             CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-CEECT
T ss_pred             cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcC-CcCCH
Confidence            334554432  4467777777766433  2233 67777777777776632111 1245677777777777643 222  


Q ss_pred             -ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccceeEe-e---cCCCCCceEEeeccCCchHHHhhhh
Q 015886          203 -DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVN-V---SSCGNLKCLKFDFLPIEDEWLCNGI  273 (398)
Q Consensus       203 -~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~~~~~  273 (398)
                       .+..+++|+.|++.++ .+..+.    ...++|+.|+++++........ +   ..+++|+.|+|+++.+...... .+
T Consensus       106 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~  183 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT-DL  183 (361)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH-HH
T ss_pred             HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH-Hh
Confidence             1344677777777776 233332    2456777777776652221111 1   4577777788777766542211 12


Q ss_pred             cCCCC--CcEEeccC
Q 015886          274 SKLPL--LEYLSMTK  286 (398)
Q Consensus       274 ~~~~~--L~~L~l~~  286 (398)
                      ..+++  ++.|++.+
T Consensus       184 ~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          184 QKLPAWVKNGLYLHN  198 (361)
T ss_dssp             HHSCHHHHTTEECCS
T ss_pred             hhccHhhcceEEecC
Confidence            33454  36677776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.42  E-value=1.5e-07  Score=81.31  Aligned_cols=143  Identities=15%  Similarity=0.052  Sum_probs=86.9

Q ss_pred             eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee---cCCCCCCceEEEecC
Q 015886          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEIILVNT  218 (398)
Q Consensus       142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---i~~~~~L~~L~l~~~  218 (398)
                      +.++.++..+...+. .-.++|+.|+|+++.+..-. ...+..+++|+.|+++++.. ..+.   +..+++|+.|++++ 
T Consensus        22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~-   97 (229)
T 3e6j_A           22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT-   97 (229)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS-
T ss_pred             CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC-
Confidence            446666655543222 22377888888887763211 12245667777777776643 2221   12334455555544 


Q ss_pred             CCcceeeecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc---
Q 015886          219 SDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---  294 (398)
Q Consensus       219 ~~l~~~~~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~---  294 (398)
                                          +...... ..+..+++|+.|+++++.+..  +...+..+++|+.|+++++ .++.+.   
T Consensus        98 --------------------N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~~  154 (229)
T 3e6j_A           98 --------------------NQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQN-QLKSIPHGA  154 (229)
T ss_dssp             --------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTTT
T ss_pred             --------------------CcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCC-cCCccCHHH
Confidence                                4311111 135778999999999998873  3334578899999999996 344443   


Q ss_pred             -ccccccceEeccccccc
Q 015886          295 -ISSPCLKTLILECCDKL  311 (398)
Q Consensus       295 -~~~~~L~~L~l~~c~~~  311 (398)
                       ..+++|+.|++.+++..
T Consensus       155 ~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTCTTCCEEECTTSCBC
T ss_pred             HhCCCCCCEEEeeCCCcc
Confidence             25789999999987643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.38  E-value=5.3e-07  Score=74.33  Aligned_cols=39  Identities=15%  Similarity=0.128  Sum_probs=16.8

Q ss_pred             cCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      ..+++|+.|+++++.+..-.....+..+++|+.|+++++
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence            344555555555444432111112334455555555553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.34  E-value=2.6e-07  Score=79.25  Aligned_cols=143  Identities=13%  Similarity=0.093  Sum_probs=88.4

Q ss_pred             eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEecCC
Q 015886          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS  219 (398)
Q Consensus       142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~  219 (398)
                      +.++++++.+...+. .-.+.++.|+|+++.++.......+..+++|+.|+++++......  .+..+++|+.|+++++ 
T Consensus        14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-   91 (220)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence            356666665543221 223467888888877633211122467788888888877533211  2445688888888877 


Q ss_pred             Ccceee----ecccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          220 DIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       220 ~l~~~~----~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      .+..+.    ..+++|++|+++++..... ...+..+++|+.|+++++.+.... ...+..+++|+.|+++++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCc
Confidence            222222    2567888888887762221 234567888888888888765532 233566788888888884

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.34  E-value=2.3e-07  Score=79.59  Aligned_cols=144  Identities=12%  Similarity=0.064  Sum_probs=81.5

Q ss_pred             EEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEEEecCCC
Q 015886          143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTSD  220 (398)
Q Consensus       143 ~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~  220 (398)
                      .+++.++.+...+.. -.++|+.|+|+++.+..-.- ..+..+++|+.|+++++.....  -.+.               
T Consensus        15 ~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~---------------   77 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQ---------------   77 (220)
T ss_dssp             EEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTT---------------
T ss_pred             EEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhh---------------
Confidence            455555554432211 12567777777665521110 1134456666666665532111  0122               


Q ss_pred             cceeeecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----
Q 015886          221 IKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----  295 (398)
Q Consensus       221 l~~~~~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----  295 (398)
                            ..++|++|+++++...... ..+..+++|+.|+++++.+.... ...+..+++|+.|+++++. ++.+..    
T Consensus        78 ------~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~  149 (220)
T 2v9t_B           78 ------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNK-LQTIAKGTFS  149 (220)
T ss_dssp             ------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred             ------CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCc-CCEECHHHHh
Confidence                  2345555555554421111 12567899999999988876532 2346678999999999963 333332    


Q ss_pred             cccccceEeccccccc
Q 015886          296 SSPCLKTLILECCDKL  311 (398)
Q Consensus       296 ~~~~L~~L~l~~c~~~  311 (398)
                      .+++|+.|++++++..
T Consensus       150 ~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          150 PLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEEeCCCCcC
Confidence            5788999999987753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=3.7e-06  Score=76.68  Aligned_cols=91  Identities=16%  Similarity=0.088  Sum_probs=45.0

Q ss_pred             CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccc-eEeccccc-cc-eeccccCCCcce
Q 015886          251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLK-TLILECCD-KL-IQVEIETPNLSI  323 (398)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~-~L~l~~c~-~~-~~~~~~~p~L~~  323 (398)
                      +++|+.+++..+.+..- ....+..|++|+.|++..  +++.++.    .+++|+ .+.+.+-- .+ ......+++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence            55666666665443321 122345566666666655  2444443    344565 56554410 11 123345556666


Q ss_pred             EEEeccce-----eecccccccccee
Q 015886          324 FKYHGDLI-----SFSSNALSLSETS  344 (398)
Q Consensus       324 l~~~~~~~-----~~~~~~~~L~~l~  344 (398)
                      +.+.+...     .++.++++|+++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            66544433     4555566666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.30  E-value=3.8e-07  Score=84.51  Aligned_cols=163  Identities=15%  Similarity=0.114  Sum_probs=100.6

Q ss_pred             eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHh-cCccccEEEeeecCCccee---ecCCCCCCceEEEec
Q 015886          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN  217 (398)
Q Consensus       142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~~~~~~~~---~i~~~~~L~~L~l~~  217 (398)
                      +.++++++.+...+. .-.+.++.|+|+++.++.-... .+. .+++|+.|+++++... .+   .+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence            467777776654322 2235689999999887432211 133 7899999999887543 22   245578999999988


Q ss_pred             CCCcceeee----cccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhh---cCCCCCcEEeccCccc
Q 015886          218 TSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKCHK  289 (398)
Q Consensus       218 ~~~l~~~~~----~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~  289 (398)
                      + .+..+..    ..++|+.|+++++..... ...+..+++|+.|+|+++.+..-.. ..+   ..+++|+.|+|+++ .
T Consensus        98 N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N-~  174 (361)
T 2xot_A           98 N-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSN-K  174 (361)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSS-C
T ss_pred             C-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCC-C
Confidence            7 3444432    567888888887762221 1245677888888888877655211 112   45788888888885 3


Q ss_pred             cccccc----cccc--cceEecccccc
Q 015886          290 LTSVRI----SSPC--LKTLILECCDK  310 (398)
Q Consensus       290 ~~~~~~----~~~~--L~~L~l~~c~~  310 (398)
                      ++.++.    .++.  ++.|++.+++.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCc
Confidence            344332    2333  46677766544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.28  E-value=6.7e-08  Score=81.47  Aligned_cols=61  Identities=16%  Similarity=0.114  Sum_probs=44.0

Q ss_pred             cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886          227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (398)
Q Consensus       227 ~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (398)
                      .+++|++|+++++...... .+..+++|+.|+++++.+........+..+++|+.|+++++.
T Consensus        91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            3477888888877632222 467788999999998888764333456778999999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.28  E-value=1.6e-07  Score=87.16  Aligned_cols=156  Identities=15%  Similarity=0.120  Sum_probs=89.2

Q ss_pred             CCeeEEEEeccccCCC--C----c-cccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce-e-ec-----
Q 015886          139 ESLHVLELSYCKLQQP--S----E-NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-L-DL-----  204 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~--~----~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~-~-~i-----  204 (398)
                      ++|++|++++|.+...  .    . ....++|+.|+|++|.+++..+..+...+++|++|++++|..-.. . .+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4577777777765432  0    0 112356777777777776666666666666677777766632210 0 00     


Q ss_pred             CCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHH---hhhhcCCCCCcE
Q 015886          205 VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL---CNGISKLPLLEY  281 (398)
Q Consensus       205 ~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~  281 (398)
                      ...++|+.|++++| .+....               .......+...++|++|+|++|.+++...   ...+...++|+.
T Consensus       152 ~~~~~L~~L~Ls~n-~l~~~~---------------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~  215 (372)
T 3un9_A          152 HDQCQITTLRLSNN-PLTAAG---------------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE  215 (372)
T ss_dssp             STTCCCCEEECCSS-CCHHHH---------------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred             hcCCccceeeCCCC-CCChHH---------------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence            11234444444444 111100               00011123567889999999998887543   344566789999


Q ss_pred             EeccCccccccccc--------cccccceEeccccccc
Q 015886          282 LSMTKCHKLTSVRI--------SSPCLKTLILECCDKL  311 (398)
Q Consensus       282 L~l~~c~~~~~~~~--------~~~~L~~L~l~~c~~~  311 (398)
                      |+|++|. +++.+.        ..+.|++|++++|..-
T Consensus       216 L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          216 LNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             EECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             EECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            9999973 332221        3478899999888753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.09  E-value=1.5e-06  Score=85.32  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             ccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEecCCCcceee--ecccCceEEEEe
Q 015886          162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIH  237 (398)
Q Consensus       162 ~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~  237 (398)
                      .|+.|+|+++.++.  +.. +..+++|+.|++++|... .+  .+..+++|+.|+++++ .+..++  ..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECC
Confidence            57777777776632  223 566777888888776433 22  3445677888888776 222221  133444444444


Q ss_pred             eeeccce--eEeecCCCCCceEEeeccCC
Q 015886          238 QTYLFPI--EVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       238 ~~~~~~~--~~~~~~~~~L~~L~l~~~~~  264 (398)
                      ++.....  ...++.+++|+.|+++++.+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            4431111  22334455555555554444

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.07  E-value=1.7e-06  Score=76.32  Aligned_cols=36  Identities=36%  Similarity=0.708  Sum_probs=33.8

Q ss_pred             ccCCCCCHHHHHHHhccCChhHHH-HHhhcccchhhh
Q 015886           10 DGISTLPEPILHHILSFLPFKEVA-QTCLLSKRWKQV   45 (398)
Q Consensus        10 D~i~~LPdeiL~~I~s~L~~~~~~-~~~~vskrWr~l   45 (398)
                      ..+..||+|++.+||++||.++++ +++.|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            467899999999999999999999 999999999976

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.03  E-value=8.4e-07  Score=77.35  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=32.2

Q ss_pred             cCCCCCHHHHHHHhccCChhHHHHHhhcccchhh
Q 015886           11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQ   44 (398)
Q Consensus        11 ~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~   44 (398)
                      .++.||+||+.+||+||+++|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4778999999999999999999999999999995

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=1.4e-05  Score=72.91  Aligned_cols=206  Identities=12%  Similarity=0.026  Sum_probs=119.7

Q ss_pred             CCCeeEEEEeccccCCC-Ccccc-CcccceEEEEEEEeC--H---HHH--------------HHHHhc--------Cccc
Q 015886          138 VESLHVLELSYCKLQQP-SENVK-LFSLRKLALREVCAD--D---QAI--------------ASLISG--------CPLI  188 (398)
Q Consensus       138 ~~~L~~L~L~~~~l~~~-~~~~~-~~~L~~L~L~~~~~~--~---~~l--------------~~l~~~--------cp~L  188 (398)
                      ..+|++|.+.+.--... ..... +++|+.|+|+++.+.  .   ..+              ...+.+        |++|
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L  103 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL  103 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence            45688888887421110 11222 788999999988875  0   000              122445        8888


Q ss_pred             cEEEeeecCCcceee---cCCCCCCceEEEecCCCcceeee----cccCceEEEEeeeec-----cceeEeec-------
Q 015886          189 EYLEIRSCEGLESLD---LVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYL-----FPIEVNVS-------  249 (398)
Q Consensus       189 e~L~l~~~~~~~~~~---i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~l~l~~~~~-----~~~~~~~~-------  249 (398)
                      ++|.+.+  .+..+.   ...|++|+.+.+... .+..+.-    .+.++..+.......     .-....+.       
T Consensus       104 ~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          104 EKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             CC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             cEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            8888876  444433   345678888888765 2222221    233444443322100     00000011       


Q ss_pred             -------------------CCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEecc
Q 015886          250 -------------------SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILE  306 (398)
Q Consensus       250 -------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~  306 (398)
                                         ...+++.+.+.+. +.......+...|++|+.|++.++ .++.++.    .+++|+.+.+.
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECC
Confidence                               1334455555543 333444555556899999999985 3566655    57789999997


Q ss_pred             cccc-c-eeccccCCCcc-eEEEeccce-----eeccccccccceeeeecc
Q 015886          307 CCDK-L-IQVEIETPNLS-IFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       307 ~c~~-~-~~~~~~~p~L~-~l~~~~~~~-----~~~~~~~~L~~l~i~~~~  349 (398)
                      +.-. + ......+++|+ .+.+.+ ..     ..+.++++|+++.+..+.
T Consensus       259 ~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          259 HNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred             cccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence            6411 1 23457788899 999977 33     788899999999995544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.97  E-value=1e-05  Score=75.78  Aligned_cols=204  Identities=11%  Similarity=0.095  Sum_probs=111.3

Q ss_pred             cCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe---CHHHHHHHHhcCccccEEEeeecCCcceee--
Q 015886          130 NLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLESLD--  203 (398)
Q Consensus       130 ~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~--  203 (398)
                      .++...|...+|+.+.+...-.... ..+..|++|+.++|..+.+   .+..+     .|+.|+.+.+...  +..+.  
T Consensus       148 ~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~  220 (401)
T 4fdw_A          148 SIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQ  220 (401)
T ss_dssp             EECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTT
T ss_pred             EECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhh
Confidence            3344333334566666665211111 4456677777777764433   32222     2567777776532  33332  


Q ss_pred             -cCCCCCCceEEEecCCCcceeee---cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCch----HHHhhhhcC
Q 015886          204 -LVNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED----EWLCNGISK  275 (398)
Q Consensus       204 -i~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~  275 (398)
                       ...|++|+.+.+..  ++..+..   ...+|+++.+...-..-....|..|++|+.+.+.++....    ..-...+..
T Consensus       221 aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~  298 (401)
T 4fdw_A          221 AFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG  298 (401)
T ss_dssp             TTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred             HhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence             33457777777764  2333332   2256777777433211111235678888988887654431    112344667


Q ss_pred             CCCCcEEeccCccccccccc----cccccceEecccccc-c-eeccccCCCcceEEEeccce-----eecccc-ccccce
Q 015886          276 LPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDK-L-IQVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSET  343 (398)
Q Consensus       276 ~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~-~-~~~~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~l  343 (398)
                      |++|+.+.+..  .++.++.    .+.+|+.+.|...-. + ......+ +|+.+.+.+...     ..+.++ ..+.++
T Consensus       299 c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l  375 (401)
T 4fdw_A          299 CPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVI  375 (401)
T ss_dssp             CTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEE
T ss_pred             CccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEE
Confidence            88899888875  4555554    457788887744311 1 2334556 788888877655     333333 356666


Q ss_pred             ee
Q 015886          344 SL  345 (398)
Q Consensus       344 ~i  345 (398)
                      .+
T Consensus       376 ~v  377 (401)
T 4fdw_A          376 RV  377 (401)
T ss_dssp             EE
T ss_pred             Ee
Confidence            66

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.95  E-value=2.9e-06  Score=85.91  Aligned_cols=108  Identities=16%  Similarity=0.147  Sum_probs=56.7

Q ss_pred             CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEecCCCcceee---eccc
Q 015886          155 SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTS  229 (398)
Q Consensus       155 ~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~---~~~p  229 (398)
                      .....+++|+.|+|+++.+..  +..-+..++.|+.|+|++|... .+  .+..+++|+.|+++++ .+..++   ..++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~  293 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF  293 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred             hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence            345556677777777666521  1111235677777777666432 22  2334566777777666 222222   2455


Q ss_pred             CceEEEEeeeeccceeEeecCCCCCceEEeeccCCch
Q 015886          230 NVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED  266 (398)
Q Consensus       230 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (398)
                      +|++|+++++........++.+++|+.|+|+++.+..
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            6666666666533333345666666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.88  E-value=1.5e-05  Score=78.16  Aligned_cols=185  Identities=18%  Similarity=0.134  Sum_probs=121.2

Q ss_pred             cCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe------------CHHHHHHHHhcCccccEEE-eeecCC--c
Q 015886          136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA------------DDQAIASLISGCPLIEYLE-IRSCEG--L  199 (398)
Q Consensus       136 ~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~------------~~~~l~~l~~~cp~Le~L~-l~~~~~--~  199 (398)
                      ..+++|+.|+|+++.+... .....+++|+.|+++++..            ........+..+++|+.|+ +..+..  +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            4467777788887765422 4456677888887755431            1122334566778888887 443211  1


Q ss_pred             cee-----ecCC--CCCCceEEEecC--CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHh
Q 015886          200 ESL-----DLVN--LSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (398)
Q Consensus       200 ~~~-----~i~~--~~~L~~L~l~~~--~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (398)
                      ..+     .+..  ...|+.|+++++  ..+.. ...+++|+.|+++++.....+..++.+++|+.|+++++.+..  +.
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence            110     1111  246899999988  22322 236789999999998844444567899999999999998876  23


Q ss_pred             hhhcCCCCCcEEeccCccccccc--c---ccccccceEeccccccce------eccccCCCcceEE
Q 015886          271 NGISKLPLLEYLSMTKCHKLTSV--R---ISSPCLKTLILECCDKLI------QVEIETPNLSIFK  325 (398)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~~~~~~--~---~~~~~L~~L~l~~c~~~~------~~~~~~p~L~~l~  325 (398)
                       .+..+++|+.|+++++ .++.+  +   ..+++|+.|+++++....      .+...+|+|+.|.
T Consensus       503 -~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          503 -GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence             4778999999999996 33433  2   267899999999987642      2234477887763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.85  E-value=9.2e-06  Score=67.82  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=61.1

Q ss_pred             cccCCccccCCCCeeEEEEeccccCCCC---ccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--
Q 015886          128 RRNLPEIIFYVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--  202 (398)
Q Consensus       128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--  202 (398)
                      ...+|..+..  +|++|+++++.+...+   .+..+++|++|+|+++.++.-. ...+..++.|+.|+++++......  
T Consensus        20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~   96 (192)
T 1w8a_A           20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHH
Confidence            3455554432  6777888777664431   2556777777777777663211 112345566666666665332111  


Q ss_pred             ecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCc
Q 015886          203 DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIE  265 (398)
Q Consensus       203 ~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  265 (398)
                      .+..++                     +|++|+++++.... ....+..+++|+.|+++++.+.
T Consensus        97 ~~~~l~---------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           97 MFLGLH---------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SSTTCT---------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HhcCCC---------------------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            122234                     44555544443111 1123567788888888877654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.81  E-value=5.7e-06  Score=69.13  Aligned_cols=123  Identities=15%  Similarity=0.067  Sum_probs=71.9

Q ss_pred             eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEEEecCC
Q 015886          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTS  219 (398)
Q Consensus       142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~  219 (398)
                      +.++++++.+...+. .-.++|+.|+++++.++.-.....+..+++|+.|+++++.....  -.+..+++|+.|++++  
T Consensus        11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~--   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE--   87 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS--
T ss_pred             CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC--
Confidence            567777776643322 12337888888877663211111245566777777766533211  1122334455555444  


Q ss_pred             CcceeeecccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          220 DIKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       220 ~l~~~~~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                                         +..... ...+..+++|+.|+++++.+.... ...+..+++|+.|+++++
T Consensus        88 -------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           88 -------------------NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             -------------------CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTC
T ss_pred             -------------------CcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCC
Confidence                               431111 123678899999999999887532 234567899999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.80  E-value=4.6e-06  Score=79.49  Aligned_cols=40  Identities=25%  Similarity=0.540  Sum_probs=36.7

Q ss_pred             CCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhc
Q 015886            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ   47 (398)
Q Consensus         8 ~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~   47 (398)
                      ..|.|+.||+|++.+||+||+.++++++++|||+|+++..
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            5688999999999999999999999999999999997543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.79  E-value=1.8e-05  Score=65.00  Aligned_cols=106  Identities=19%  Similarity=0.103  Sum_probs=54.3

Q ss_pred             CCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~  214 (398)
                      ++|++|+++++.+...  .....+++|++|+++++.++.-. ...+..+++|+.|+++++......  .+.         
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---------   97 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFD---------   97 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT---------
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHHHhh---------
Confidence            5677777777665433  22355666777777666552110 111344556666666554321110  012         


Q ss_pred             EecCCCcceeeecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCch
Q 015886          215 LVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED  266 (398)
Q Consensus       215 l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  266 (398)
                                  ..++|++|+++++....... .+..+++|++|+++++.+..
T Consensus        98 ------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           98 ------------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ------------CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence                        23445555555444111111 24567888888888777643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.78  E-value=1.8e-05  Score=66.14  Aligned_cols=105  Identities=11%  Similarity=0.004  Sum_probs=50.9

Q ss_pred             CCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEE
Q 015886          139 ESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL  215 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l  215 (398)
                      ++|++|+++++.+... ..+..+++|+.|+|+++.++.-.- ..+.+++.|+.|+++++......  .+.          
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~----------   99 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFD----------   99 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTT----------
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhC----------
Confidence            4566666666655432 334455566666665555421110 11334455555555544321100  122          


Q ss_pred             ecCCCcceeeecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCc
Q 015886          216 VNTSDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIE  265 (398)
Q Consensus       216 ~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  265 (398)
                                 ..++|+.|+++++....... .+..+++|+.|+++++.+.
T Consensus       100 -----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          100 -----------GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             -----------TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             -----------CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence                       23455555555544211111 2456788888888876653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.73  E-value=1.7e-05  Score=65.15  Aligned_cols=125  Identities=14%  Similarity=0.034  Sum_probs=68.8

Q ss_pred             eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCc
Q 015886          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDI  221 (398)
Q Consensus       142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l  221 (398)
                      +.+++.++.+...+ ....++|+.|+++++.+..- ....+..+++|+.|++.++... .+.-                 
T Consensus        10 ~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~-----------------   69 (177)
T 2o6r_A           10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQ-SLPD-----------------   69 (177)
T ss_dssp             TEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC-CCCT-----------------
T ss_pred             CEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcce-EeCh-----------------
Confidence            45566665554322 22235777777777665311 1112345566666666655321 1110                 


Q ss_pred             ceeeecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886          222 KRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (398)
Q Consensus       222 ~~~~~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (398)
                       ......++|+.|+++++...... ..+..+++|+.|+++++.+... ....+..+++|+.|++++++
T Consensus        70 -~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           70 -GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             -TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             -hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence             00013445555555554421111 1257789999999999887642 23445678999999999963

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.73  E-value=1.2e-05  Score=81.31  Aligned_cols=143  Identities=15%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHH--------HHHHHHhcCccccEEEeeecCCccee--ecCCCC
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ--------AIASLISGCPLIEYLEIRSCEGLESL--DLVNLS  208 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~--------~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~  208 (398)
                      ++++.|+|.++.+...    .-..|+.++|+.+.++..        .....+..++.|+.|+|++|... .+  .+..++
T Consensus       173 ~~~~~l~L~~n~~~~~----~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA----NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD  247 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred             CccceEEeeCCCCCcc----hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence            5577888877665432    222344444444443211        12344667889999999887643 22  233568


Q ss_pred             CCceEEEecCCCcceee---ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEecc
Q 015886          209 NLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT  285 (398)
Q Consensus       209 ~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  285 (398)
                      +|+.|.++++ .+..++   ..+++|+.|+++++........++.+++|+.|+|+++.+..  +...+..+++|+.|+|+
T Consensus       248 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCC
Confidence            8999999887 333333   26788888888888744444557788888888888887752  23336678888888888


Q ss_pred             Cccc
Q 015886          286 KCHK  289 (398)
Q Consensus       286 ~c~~  289 (398)
                      ++.-
T Consensus       325 ~N~l  328 (727)
T 4b8c_D          325 GNPL  328 (727)
T ss_dssp             TSCC
T ss_pred             CCcc
Confidence            8643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.73  E-value=2.2e-05  Score=65.62  Aligned_cols=102  Identities=16%  Similarity=0.117  Sum_probs=71.3

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  191 (398)
                      +++++|+++....  ..+|..+..+++|+.|+++++.+...  ..+..+++|++|+|+++.+..-.- ..+..+++|+.|
T Consensus        31 ~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEE
Confidence            4788888886433  36777788899999999999988655  457789999999999998832211 125678999999


Q ss_pred             EeeecCCccee--ecCCCCCCceEEEecC
Q 015886          192 EIRSCEGLESL--DLVNLSNLKEIILVNT  218 (398)
Q Consensus       192 ~l~~~~~~~~~--~i~~~~~L~~L~l~~~  218 (398)
                      +++++....-.  .+..+++|+.|.+.++
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            99987543211  1223455666555544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.59  E-value=3.3e-05  Score=73.23  Aligned_cols=38  Identities=32%  Similarity=0.486  Sum_probs=35.8

Q ss_pred             cCCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhh
Q 015886            7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQ   44 (398)
Q Consensus         7 ~~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~   44 (398)
                      ...|.++.||+|++.+||+||+.+++++++.|||+|++
T Consensus        14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~   51 (445)
T 2ovr_B           14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI   51 (445)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred             ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence            35699999999999999999999999999999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.53  E-value=1.6e-05  Score=75.22  Aligned_cols=37  Identities=35%  Similarity=0.567  Sum_probs=35.2

Q ss_pred             CCccCCCCCHH----HHHHHhccCChhHHHHHhhcccchhh
Q 015886            8 EVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQ   44 (398)
Q Consensus         8 ~~D~i~~LPde----iL~~I~s~L~~~~~~~~~~vskrWr~   44 (398)
                      ..|.|+.||+|    |+.+||+||+.++++++++|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            56899999999    99999999999999999999999995

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.46  E-value=4.4e-05  Score=63.26  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=18.9

Q ss_pred             cCCCCCceEEe--eccCCchHH---HhhhhcCCCCCcEEeccCc
Q 015886          249 SSCGNLKCLKF--DFLPIEDEW---LCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       249 ~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~c  287 (398)
                      ...++|++|+|  +++.++++.   +...+...++|+.|+++++
T Consensus       118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            33445555555  455555533   2233334455555555553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.38  E-value=0.00013  Score=59.49  Aligned_cols=67  Identities=16%  Similarity=0.116  Sum_probs=38.6

Q ss_pred             cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecC
Q 015886          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE  197 (398)
Q Consensus       128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~  197 (398)
                      ...+|..+.  ++|++|+|+++.+...  ..+..+++|++|+|+++.+..-. ...+..+++|+.|+++++.
T Consensus        21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCc
Confidence            344555442  6677777777766543  33556777777777777663111 1123456666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.32  E-value=0.00017  Score=58.96  Aligned_cols=65  Identities=12%  Similarity=0.099  Sum_probs=37.4

Q ss_pred             ccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeec
Q 015886          129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC  196 (398)
Q Consensus       129 ~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~  196 (398)
                      ..+|..+.  ++|++|+++++.+...  ..+..+++|+.|+|+++.++.-. ...+..+++|+.|+++++
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC
Confidence            45555443  6677777777766543  33556777777777776653210 112345566666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.27  E-value=0.00058  Score=63.80  Aligned_cols=198  Identities=15%  Similarity=0.191  Sum_probs=123.5

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEE--eCHHHHHHHHhcCcccc
Q 015886          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVC--ADDQAIASLISGCPLIE  189 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le  189 (398)
                      ++++++.+..   ....++. .+..|++|+.+++..+.+..- .....+.+|+.+.|....  +++..    +.+|++|+
T Consensus       157 ~~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L~  229 (401)
T 4fdw_A          157 STVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQA----FLKTSQLK  229 (401)
T ss_dssp             CCCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTCC
T ss_pred             CCceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhH----hhCCCCCC
Confidence            3566665543   2234444 345689999999987655332 334447899999886431  13332    56899999


Q ss_pred             EEEeeecCCcceee---cCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeecc------ceeEeecCCCCCce
Q 015886          190 YLEIRSCEGLESLD---LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLF------PIEVNVSSCGNLKC  256 (398)
Q Consensus       190 ~L~l~~~~~~~~~~---i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~------~~~~~~~~~~~L~~  256 (398)
                      .+.+...  +..+.   ... .+|+.+.+..  .+..+.    ..|++|+++.+.+....      -....|..|++|+.
T Consensus       230 ~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          230 TIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             CEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred             EEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence            9999753  33333   233 6899998854  444443    26889999999876521      11124678999999


Q ss_pred             EEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccccccc---eeccccCC-CcceEEEec
Q 015886          257 LKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKL---IQVEIETP-NLSIFKYHG  328 (398)
Q Consensus       257 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~---~~~~~~~p-~L~~l~~~~  328 (398)
                      +.+... +..- -...+.+|++|+.+.|..  +++.++.    .+ +|+.+.+.+....   ......+| ++..+.+..
T Consensus       305 l~l~~~-i~~I-~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          305 FEIPES-IRIL-GQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             ECCCTT-CCEE-CTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             EEeCCc-eEEE-hhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            999732 2221 123467789999999966  4555554    45 8999988876443   12223333 566666644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.19  E-value=0.00032  Score=65.46  Aligned_cols=113  Identities=12%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccce
Q 015886          227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKT  302 (398)
Q Consensus       227 ~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~  302 (398)
                      .+.+|+.+.+......-....+..++.++.+......+.+    ..+..+.+|+.+.+..  .++.++.    .+.+|+.
T Consensus       251 ~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          251 GCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT----TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEcCCCcceeeccccccccccceeccCceeecc----cccccccccccccccc--ccceechhhhcCCCCCCE
Confidence            4455666665433211111123444555555544332221    1234456666666543  2333333    3345555


Q ss_pred             Eecccc-ccc-eeccccCCCcceEEEeccce----eeccccccccceee
Q 015886          303 LILECC-DKL-IQVEIETPNLSIFKYHGDLI----SFSSNALSLSETSL  345 (398)
Q Consensus       303 L~l~~c-~~~-~~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i  345 (398)
                      +.|... ..+ ......+.+|+++.+...-.    .++.+|.+|+++.+
T Consensus       325 i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          325 IDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             ECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEE
T ss_pred             EEeCCcccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEE
Confidence            555321 111 12234455566555533211    56677777777777

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.13  E-value=0.0008  Score=55.51  Aligned_cols=19  Identities=11%  Similarity=0.198  Sum_probs=13.1

Q ss_pred             eeccccccccceeeeeccc
Q 015886          332 SFSSNALSLSETSLCFSSH  350 (398)
Q Consensus       332 ~~~~~~~~L~~l~i~~~~~  350 (398)
                      ..+...++|+++++..+..
T Consensus       145 ~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCcCEEeccCCCC
Confidence            3445567899999976653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.05  E-value=0.00059  Score=55.45  Aligned_cols=39  Identities=21%  Similarity=0.132  Sum_probs=19.2

Q ss_pred             ecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      +..+++|+.|+++++.+... ....+..+++|+.|+++++
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             hcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCC
Confidence            44555556666655554421 1122344555555555553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.98  E-value=0.00086  Score=54.71  Aligned_cols=58  Identities=16%  Similarity=0.116  Sum_probs=26.1

Q ss_pred             cCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          229 SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       229 p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      ++|+.|+++++..... ...+..+++|+.|+|+++.+..- ....+..+++|+.|+++++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCC
Confidence            3444555544441111 11244555566666655554431 1122344555666665553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.18  E-value=0.0025  Score=58.08  Aligned_cols=88  Identities=20%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             ccccCCccccCCCCeeEEEEec-cccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee
Q 015886          127 ERRNLPEIIFYVESLHVLELSY-CKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD  203 (398)
Q Consensus       127 ~~~~l~~~~~~~~~L~~L~L~~-~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~  203 (398)
                      ....+|. +..+++|++|+|++ +.+...  ..+..+++|+.|+|++|.+..-. ...+..+++|+.|+|+++... .+.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~-~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALE-SLS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccc-eeC
Confidence            3445777 66677788888875 665433  34567778888888777663211 122456778888888776432 221


Q ss_pred             ---cCCCCCCceEEEecC
Q 015886          204 ---LVNLSNLKEIILVNT  218 (398)
Q Consensus       204 ---i~~~~~L~~L~l~~~  218 (398)
                         +.. .+|+.|.+.++
T Consensus        97 ~~~~~~-~~L~~l~l~~N  113 (347)
T 2ifg_A           97 WKTVQG-LSLQELVLSGN  113 (347)
T ss_dssp             STTTCS-CCCCEEECCSS
T ss_pred             HHHccc-CCceEEEeeCC
Confidence               112 23777777655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.99  E-value=0.0076  Score=56.01  Aligned_cols=198  Identities=14%  Similarity=0.097  Sum_probs=111.1

Q ss_pred             ccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe--CHHHHHHHHhcCccccEEEeeecC-----------Ccc
Q 015886          135 IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCE-----------GLE  200 (398)
Q Consensus       135 ~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~-----------~~~  200 (398)
                      +..|++|+.+.+........ ..+..+++|+.+.+.....  .+..    +..|+.|+.+.+....           .++
T Consensus       158 F~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~----F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~  233 (394)
T 4fs7_A          158 FATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYC----FAECILLENMEFPNSLYYLGDFALSKTGVK  233 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTT----TTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred             hcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchh----hccccccceeecCCCceEeehhhcccCCCc
Confidence            44578888888866432222 4556677888777753311  2222    4566777766554321           111


Q ss_pred             eee------------cCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886          201 SLD------------LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       201 ~~~------------i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      .+.            ...+..|+.+.+...  ...+.    ..++.++...+......  ...+..+.+|+.+.+... +
T Consensus       234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i  308 (394)
T 4fs7_A          234 NIIIPDSFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-V  308 (394)
T ss_dssp             EEEECTTCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-C
T ss_pred             eEEECCCceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec--cccccccccccccccccc-c
Confidence            111            112455665555432  12221    14556666655433210  113567888999888632 1


Q ss_pred             chHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEecccc-ccc-eeccccCCCcceEEEeccce---eecc
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECC-DKL-IQVEIETPNLSIFKYHGDLI---SFSS  335 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c-~~~-~~~~~~~p~L~~l~~~~~~~---~~~~  335 (398)
                      .. .-...+..|.+|+.++|..  .++.++.    .+.+|+.+.+... ..+ ......+++|+++.+...-.   +.+.
T Consensus       309 ~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~  385 (394)
T 4fs7_A          309 KF-IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKRLEQYRYDFE  385 (394)
T ss_dssp             CE-ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGGGGGGGGGBC
T ss_pred             ce-echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCCCEEhhheec
Confidence            11 0122356789999999865  4555554    4678888887543 222 24457788999998866422   6777


Q ss_pred             cccccccee
Q 015886          336 NALSLSETS  344 (398)
Q Consensus       336 ~~~~L~~l~  344 (398)
                      ++++|+.++
T Consensus       386 ~c~~L~~IK  394 (394)
T 4fs7_A          386 DTTKFKWIK  394 (394)
T ss_dssp             TTCEEEEEC
T ss_pred             CCCCCcEEC
Confidence            888887763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.85  E-value=0.032  Score=51.72  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=54.5

Q ss_pred             ecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEecccc-ccc-eeccccCCCc
Q 015886          248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECC-DKL-IQVEIETPNL  321 (398)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c-~~~-~~~~~~~p~L  321 (398)
                      |..+.+|+.+.+......  .-...+..|++|+.+.+..  .++.++.    .+.+|+.+.|... ..+ ......+.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccccce--ecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence            345667777776432211  0122345677777777754  3444444    4567777777432 222 2334566778


Q ss_pred             ceEEEeccc--e--eeccccccccceeee
Q 015886          322 SIFKYHGDL--I--SFSSNALSLSETSLC  346 (398)
Q Consensus       322 ~~l~~~~~~--~--~~~~~~~~L~~l~i~  346 (398)
                      +++.+...-  +  .++.+|.+|+++.+.
T Consensus       337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          337 ERIAIPSSVTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             CEEEECTTCCBCCGGGGTTCTTCCEEEES
T ss_pred             CEEEECcccCEEhHhHhhCCCCCCEEEEC
Confidence            887774321  1  777888888888874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.40  E-value=0.0039  Score=54.41  Aligned_cols=79  Identities=25%  Similarity=0.251  Sum_probs=38.5

Q ss_pred             CCCeEEEEEecCCcc-ccCCccccCCCCeeEEEEeccccCCCCccccCc--ccceEEEEEEEeCH------HHHHHHHhc
Q 015886          114 SEVKELVLVHWRSER-RNLPEIIFYVESLHVLELSYCKLQQPSENVKLF--SLRKLALREVCADD------QAIASLISG  184 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~L~~L~L~~~~~~~------~~l~~l~~~  184 (398)
                      ++|+.|+++.+.... ..++..+..+++|+.|+|+++.+........+.  +|+.|.|.+|.+..      .....++..
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~  249 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER  249 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence            466666665532221 123344445566666666666554332222222  56666666655521      122344555


Q ss_pred             CccccEEE
Q 015886          185 CPLIEYLE  192 (398)
Q Consensus       185 cp~Le~L~  192 (398)
                      +|+|+.|+
T Consensus       250 ~P~L~~LD  257 (267)
T 3rw6_A          250 FPKLLRLD  257 (267)
T ss_dssp             CTTCCEES
T ss_pred             CcccCeEC
Confidence            66666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.38  E-value=0.0077  Score=52.56  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=20.4

Q ss_pred             CCceEEeeccCCch------HHHhhhhcCCCCCcEEecc
Q 015886          253 NLKCLKFDFLPIED------EWLCNGISKLPLLEYLSMT  285 (398)
Q Consensus       253 ~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l~  285 (398)
                      +|++|++.++.+..      .-...++..+|+|+.|+-.
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence            67777777766653      2223456667777777643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.34  E-value=0.11  Score=48.11  Aligned_cols=117  Identities=11%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccce
Q 015886          227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKT  302 (398)
Q Consensus       227 ~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~  302 (398)
                      .+.+|+++.+......-....+..+++|+.+.+... +.. .-...+..|.+|+.+.|..  .++.++.    .+.+|+.
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-ITE-LPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCE
T ss_pred             ecccccEEecccccceecCcccccccccccccCCCc-ccc-cCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCE
Confidence            456677776643321100113466788999888532 111 1123466789999999965  4566554    5678888


Q ss_pred             Eecccc-ccc-eeccccCCCcceEEEeccce--eeccccccccceeeee
Q 015886          303 LILECC-DKL-IQVEIETPNLSIFKYHGDLI--SFSSNALSLSETSLCF  347 (398)
Q Consensus       303 L~l~~c-~~~-~~~~~~~p~L~~l~~~~~~~--~~~~~~~~L~~l~i~~  347 (398)
                      +.|-.. ..+ ......+++|+++.+.+...  ..+..+..|+.+.+..
T Consensus       339 i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          339 IAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             EEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred             EEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence            888432 223 34557788999999988655  4456677888888843

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.45  E-value=0.034  Score=50.44  Aligned_cols=73  Identities=14%  Similarity=0.038  Sum_probs=36.3

Q ss_pred             EEEecc-ccCCCCccccCcccceEEEEE-EEeCHHHHHHHHhcCccccEEEeeecCCccee---ecCCCCCCceEEEecC
Q 015886          144 LELSYC-KLQQPSENVKLFSLRKLALRE-VCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNT  218 (398)
Q Consensus       144 L~L~~~-~l~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~---~i~~~~~L~~L~l~~~  218 (398)
                      +++++. .+...+....+++|+.|+|++ +.+..-. ...+..+++|+.|+|++|. +..+   .+..+++|+.|+++++
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence            455554 443332255566677777764 5542110 0113456666677666653 2222   1233455666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.32  E-value=1.3  Score=40.42  Aligned_cols=70  Identities=19%  Similarity=0.172  Sum_probs=36.4

Q ss_pred             cCCCCCcEEeccCccccccccc----cccccceEeccccc--cc-eeccccCCCcceEEEecc-ce---eeccccccccc
Q 015886          274 SKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD--KL-IQVEIETPNLSIFKYHGD-LI---SFSSNALSLSE  342 (398)
Q Consensus       274 ~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~--~~-~~~~~~~p~L~~l~~~~~-~~---~~~~~~~~L~~  342 (398)
                      ..+.+|+.+.+..  .++.++.    .+.+|+.+.+.+..  .+ ......+.+|+++.+... ..   .++.+|.+|++
T Consensus       260 ~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          260 QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALST  337 (379)
T ss_dssp             TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCC
T ss_pred             ceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCE
Confidence            3455555555533  2333332    34566666664432  12 233455666777666432 11   66677777777


Q ss_pred             eee
Q 015886          343 TSL  345 (398)
Q Consensus       343 l~i  345 (398)
                      +.|
T Consensus       338 i~i  340 (379)
T 4h09_A          338 ISY  340 (379)
T ss_dssp             CCC
T ss_pred             EEE
Confidence            776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.95  E-value=0.36  Score=44.16  Aligned_cols=75  Identities=17%  Similarity=0.172  Sum_probs=33.0

Q ss_pred             cCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccc-cccc-eeccccCCCcc
Q 015886          249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILEC-CDKL-IQVEIETPNLS  322 (398)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~-c~~~-~~~~~~~p~L~  322 (398)
                      ..+.+|+.+.+... +.. .-...+..|++|+.+.+.+. .++.++.    .+.+|+.+.|-. ...+ ......+.+|+
T Consensus       260 ~~~~~l~~i~l~~~-i~~-i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKT-VPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTCTTCCEEEECCC-CSE-ECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ceeehhcccccccc-cee-cccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCC
Confidence            34555565555321 111 01122455666666666542 2333332    345566665532 2222 12234455555


Q ss_pred             eEEE
Q 015886          323 IFKY  326 (398)
Q Consensus       323 ~l~~  326 (398)
                      ++.+
T Consensus       337 ~i~i  340 (379)
T 4h09_A          337 TISY  340 (379)
T ss_dssp             CCCC
T ss_pred             EEEE
Confidence            5544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.87  E-value=0.35  Score=39.80  Aligned_cols=36  Identities=11%  Similarity=-0.004  Sum_probs=20.1

Q ss_pred             CCCceEEeeccCCchHHHhhh---hcCCCCCcEEeccCc
Q 015886          252 GNLKCLKFDFLPIEDEWLCNG---ISKLPLLEYLSMTKC  287 (398)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~c  287 (398)
                      ..|++|+|+.+.+++.+...+   +..-..|+.|+|+++
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            456666666666666443333   333345777776653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=88.09  E-value=0.083  Score=43.57  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=53.4

Q ss_pred             hhhHHHHHHHHHh--CCCeEEEEEec-CCccc---cCCccccCCCCeeEEEEeccccCCC------CccccCcccceEEE
Q 015886          101 ASLAGRCLGLAIE--SEVKELVLVHW-RSERR---NLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLAL  168 (398)
Q Consensus       101 ~~~~~~~l~~~~~--~~l~~L~l~~~-~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L  168 (398)
                      ...++..+..+..  +.+++|.+... .....   .+-..+..-++|+.|+|++|.+.+.      .....-..|+.|+|
T Consensus        26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence            3455666666554  36777776542 22111   2222344456788888888776543      11223457788888


Q ss_pred             EEEEeCHHHHHHHHh---cCccccEEEeeec
Q 015886          169 REVCADDQAIASLIS---GCPLIEYLEIRSC  196 (398)
Q Consensus       169 ~~~~~~~~~l~~l~~---~cp~Le~L~l~~~  196 (398)
                      +++.+++.+...+..   .-..|++|+|.++
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            888777776655543   3345666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	8e-07
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	4e-06
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	5e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 8e-07
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 7  LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
           + D IS LP+ +  ++LSFL  K++ Q     + W+ +
Sbjct: 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 11/46 (23%), Positives = 26/46 (56%)

Query: 7  LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDV 52
          L+ D I++LP  I   I ++L F+++  +  +S+ W ++ +    +
Sbjct: 1  LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 6  VLEVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQVWQ 47
          +L+ D I+ LP      I  +ILS+L  K +    L+ K W +V  
Sbjct: 5  MLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS 50

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 13 STLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
           +LP+ +L  I S L   E+ +   + KRW ++
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.29
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.18
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.16
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.1
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.04
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.83
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.81
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.73
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.51
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.43
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.47

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-16  Score=139.08  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=36.8

Q ss_pred             CCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee----cCCCCCCc
Q 015886          139 ESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD----LVNLSNLK  211 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~----i~~~~~L~  211 (398)
                      .+|++|++++|.+...   .....|++|++|+|+++.+++..+.. +..+|+|++|++++|..++...    ..++++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            4555555555544322   22344555555555555544444443 2345555555555554443211    12245555


Q ss_pred             eEEEecC
Q 015886          212 EIILVNT  218 (398)
Q Consensus       212 ~L~l~~~  218 (398)
                      +|++++|
T Consensus       125 ~L~ls~c  131 (284)
T d2astb2         125 ELNLSWC  131 (284)
T ss_dssp             EEECCCC
T ss_pred             ccccccc
Confidence            5555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.4e-17  Score=143.33  Aligned_cols=173  Identities=18%  Similarity=0.209  Sum_probs=109.9

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEY  190 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~  190 (398)
                      .++++|+++.+......+...+..|++|++|++.+|.+...  .....+++|++|++++|.. ++.++..++.+||+|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            37899988765444445566677899999999999976543  4455789999999999754 99999999999999999


Q ss_pred             EEeeecCCcceee----c-CCCCCCceEEEecC-CCcc-----eeeecccCceEEEEeeee--ccceeEeecCCCCCceE
Q 015886          191 LEIRSCEGLESLD----L-VNLSNLKEIILVNT-SDIK-----RVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCL  257 (398)
Q Consensus       191 L~l~~~~~~~~~~----i-~~~~~L~~L~l~~~-~~l~-----~~~~~~p~L~~l~l~~~~--~~~~~~~~~~~~~L~~L  257 (398)
                      |++++|..+..-.    + ..+++|++|.+.+| ..+.     .+...+|+|++|+++++.  .......+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            9999997764211    1 12477888888776 2221     122245556665555543  11112233445555555


Q ss_pred             Eeecc-CCchHHHhhhhcCCCCCcEEeccCc
Q 015886          258 KFDFL-PIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       258 ~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      +++++ .+++..+.. +..+|+|+.|++.+|
T Consensus       206 ~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            55543 344443333 234555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=8.8e-12  Score=105.95  Aligned_cols=161  Identities=18%  Similarity=0.132  Sum_probs=65.9

Q ss_pred             CeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCC
Q 015886          140 SLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTS  219 (398)
Q Consensus       140 ~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~  219 (398)
                      +|+.|++.+|.+........+++|++|+++++.+.+-.  . +..+++|+.+.+.++....--.+..+++|+.+.+.+|.
T Consensus        42 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC
T ss_pred             CcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccccccccccccccccccccccccc
Confidence            34444444444433333334444444444444432110  0 33444444444444322111112334445555544442


Q ss_pred             Ccceee-ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc--c
Q 015886          220 DIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--S  296 (398)
Q Consensus       220 ~l~~~~-~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~  296 (398)
                      ...... ...+.+..+.++++.... ...+..+++|++|++.++.+.+..   .+..+++|+.|+++++ .++++..  .
T Consensus       119 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n-~l~~l~~l~~  193 (227)
T d1h6ua2         119 ITDVTPLAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDN-KISDISPLAS  193 (227)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSS-CCCCCGGGGG
T ss_pred             ccccchhccccchhhhhchhhhhch-hhhhccccccccccccccccccch---hhcccccceecccCCC-ccCCChhhcC
Confidence            111111 123444444444333111 112344555555555555443211   1344556666666554 2333322  3


Q ss_pred             ccccceEecccc
Q 015886          297 SPCLKTLILECC  308 (398)
Q Consensus       297 ~~~L~~L~l~~c  308 (398)
                      +++|++|++++|
T Consensus       194 l~~L~~L~Ls~N  205 (227)
T d1h6ua2         194 LPNLIEVHLKNN  205 (227)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEECcCC
Confidence            455666666555

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=2.3e-11  Score=103.33  Aligned_cols=182  Identities=19%  Similarity=0.190  Sum_probs=134.7

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  193 (398)
                      .+++.|.+..+...  .++ .+..+++|++|+++++.+........+++|+.++++++.+++  +.. +..++.|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCC--cch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccccc
Confidence            48999988765433  343 467799999999999988766668899999999999887732  212 568999999999


Q ss_pred             eecCCcceeecCCCCCCceEEEecCCCcceee-ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhh
Q 015886          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (398)
Q Consensus       194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~-~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  272 (398)
                      .++.......+...+.++.+.+..+....... ..+++|+.|.++++.... ...++++++|+.|+++++.+.+-  .. 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~Ls~n~l~~l--~~-  190 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKISDI--SP-  190 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GG-
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc-chhhcccccceecccCCCccCCC--hh-
Confidence            98866544445556889999998873322222 377899999998876322 22478899999999999887652  22 


Q ss_pred             hcCCCCCcEEeccCccccccccc--cccccceEecc
Q 015886          273 ISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILE  306 (398)
Q Consensus       273 ~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~  306 (398)
                      +..+++|+.|++++| .++++..  .+++|+.|+++
T Consensus       191 l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         191 LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            578899999999998 4665542  56667776664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=4.5e-11  Score=99.22  Aligned_cols=142  Identities=16%  Similarity=0.162  Sum_probs=65.5

Q ss_pred             CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~  218 (398)
                      +++++|++.++.+........+++|++|+++++.+++-.  . +..+|+|+.|.+.++....--.+..+++|+.|.+.+|
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccccccccccccccccccccc
Confidence            345555555554443333444555555555555542211  1 3455566666665553322222334455555555554


Q ss_pred             CCcceee-ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          219 SDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       219 ~~l~~~~-~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      ....... ..+++|+.++++++.... ...+..+++|+.|++.++.+.+-  . -+..+++|+.|+++++
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~l--~-~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         117 QITDIDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTDL--K-PLANLTTLERLDISSN  182 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCSS
T ss_pred             ccccccccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccCC--c-cccCCCCCCEEECCCC
Confidence            2111111 134455555555443111 11244555666666655554431  1 1345566666666654

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.5e-12  Score=74.15  Aligned_cols=36  Identities=28%  Similarity=0.467  Sum_probs=33.2

Q ss_pred             CCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhc
Q 015886           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ   47 (398)
Q Consensus        12 i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~   47 (398)
                      ++.||+||+.+||+||+.+|+++++.|||+|+++-.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999998643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=1.9e-10  Score=105.22  Aligned_cols=137  Identities=20%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             CCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHH-H--------------
Q 015886          207 LSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW-L--------------  269 (398)
Q Consensus       207 ~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~--------------  269 (398)
                      .++|+.|.+.++ .+..+.  ...++|+.++++++.... ...++.+++|+.|+++++.+.... +              
T Consensus       218 ~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n  295 (384)
T d2omza2         218 LTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN  295 (384)
T ss_dssp             CTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCCEEECCCC-CCCCcchhhcccccchhccccCccCC-CCcccccccCCEeeccCcccCCCCcccccccccccccccc
Confidence            456677776666 222222  245677777777665221 113556667777777655443210 0              


Q ss_pred             ----hhhhcCCCCCcEEeccCcccccccc--ccccccceEeccccccce-eccccCCCcceEEEeccce---eecccccc
Q 015886          270 ----CNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALS  339 (398)
Q Consensus       270 ----~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l~~c~~~~-~~~~~~p~L~~l~~~~~~~---~~~~~~~~  339 (398)
                          ...+..+++++.|+++++ .++.+.  ..+++|++|++++|..-. .....+|+|+.|.+.+++.   .-+.++++
T Consensus       296 ~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~  374 (384)
T d2omza2         296 QLEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR  374 (384)
T ss_dssp             CCSCCGGGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred             ccccccccchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChhhccCCC
Confidence                011344566666666664 233322  255677777777764211 1134566777777766655   23556667


Q ss_pred             ccceeee
Q 015886          340 LSETSLC  346 (398)
Q Consensus       340 L~~l~i~  346 (398)
                      |++++|+
T Consensus       375 L~~L~L~  381 (384)
T d2omza2         375 ITQLGLN  381 (384)
T ss_dssp             CSEEECC
T ss_pred             CCEeeCC
Confidence            7776664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=8.8e-11  Score=98.31  Aligned_cols=36  Identities=25%  Similarity=0.256  Sum_probs=18.5

Q ss_pred             cCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      ..+++|+.++++++.+.+-  .. +..+++|+.|+++++
T Consensus       153 ~~l~~L~~l~l~~n~l~~i--~~-l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         153 SRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             GGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccccc--cc-ccCCCCCCEEECCCC
Confidence            4455566666655554431  11 344556666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.07  E-value=2.1e-10  Score=102.15  Aligned_cols=231  Identities=15%  Similarity=0.069  Sum_probs=137.2

Q ss_pred             CCeEEEEEecC-CccccCCccccCCCCeeEEEEec-cccC--CCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886          115 EVKELVLVHWR-SERRNLPEIIFYVESLHVLELSY-CKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (398)
Q Consensus       115 ~l~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~L~~-~~l~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  190 (398)
                      +|.+|++.... .....+|..+..+++|++|+|++ +.+.  .|.....+++|++|+|+++.+.... ...+...+.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhhcc
Confidence            57888887733 23346888899999999999987 4443  3356778899999999999872211 122456788999


Q ss_pred             EEeeecCCccee--ecCCCCCCceEEEecCCCcceeee---cccC-ceEEEEeeeeccc-eeEeecCCCCCceEEeeccC
Q 015886          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI---KTSN-VNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLP  263 (398)
Q Consensus       191 L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~---~~p~-L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~  263 (398)
                      +++.++.....+  .+..+++|+.+.+.++.....++.   ..+. ++.+.++++.... ....+..+ ....+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            998877544332  355678889998888733223321   2333 3666665554111 11112222 22345555443


Q ss_pred             CchHHHhhhhcCCCCCcEEeccCccccccccc--cccccceEeccccccce---eccccCCCcceEEEeccce----eec
Q 015886          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI----SFS  334 (398)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~----~~~  334 (398)
                      .... .......+++++.|++.++.....++.  ..++|+.|+++++....   +....+++|+.|.++++..    ...
T Consensus       209 ~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            3222 233355677888888877643222222  35678888888776542   2235567777777777654    122


Q ss_pred             cccccccceeeeec
Q 015886          335 SNALSLSETSLCFS  348 (398)
Q Consensus       335 ~~~~~L~~l~i~~~  348 (398)
                      .+.++|+.+.+..+
T Consensus       288 ~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         288 GNLQRFDVSAYANN  301 (313)
T ss_dssp             TTGGGSCGGGTCSS
T ss_pred             ccCCCCCHHHhCCC
Confidence            34556666666444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=1.6e-10  Score=95.86  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=118.9

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (398)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  192 (398)
                      ..++++|.++.+...  .+. .+..+++|++|+++++.+........+++|+.|+++++.+..-.  . +.+++.|+.|+
T Consensus        39 l~~l~~L~l~~~~i~--~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIK--SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCC--Ccc-ccccCCCcCcCccccccccCcccccCCccccccccccccccccc--c-ccccccccccc
Confidence            358888888764332  232 35668999999999998876666788999999999998773211  1 57899999999


Q ss_pred             eeecCCcceeecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHh
Q 015886          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (398)
Q Consensus       193 l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (398)
                      +.++.......+..+++|+.|.++++. +..+.  ..+++|+.|++.++..... ..++++++|++|+++++.+++-  .
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~i~~i--~  188 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVSDI--S  188 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred             ccccccccccccchhhhhHHhhhhhhh-hcccccccccccccccccccccccCC-ccccCCCCCCEEECCCCCCCCC--c
Confidence            998876554456678999999999882 33333  2678999999998863221 2378899999999999988762  2


Q ss_pred             hhhcCCCCCcEE
Q 015886          271 NGISKLPLLEYL  282 (398)
Q Consensus       271 ~~~~~~~~L~~L  282 (398)
                       .+..+++||.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             25678888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=1.8e-10  Score=96.41  Aligned_cols=161  Identities=19%  Similarity=0.216  Sum_probs=119.4

Q ss_pred             CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEee
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~  194 (398)
                      .+++|+++.+...  .++ .+..+++|++|+++++.+...+....+++|+.|+++++.+++  +.. +..+|+|+.|++.
T Consensus        47 ~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred             CccEEECcCCCCC--Cch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-ccccccccccccc
Confidence            7888877664322  233 356789999999999988766666789999999999998853  222 5778999999999


Q ss_pred             ecCCcceeecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhh
Q 015886          195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (398)
Q Consensus       195 ~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  272 (398)
                      ++....--.+.++++|+.+.+.++. +....  ..+++|+.++++++.... ...+..+++|++|+++++.+.+  +. -
T Consensus       121 ~~~~~~~~~l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i~~--l~-~  195 (210)
T d1h6ta2         121 HNGISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHISD--LR-A  195 (210)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCB--CG-G
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccccccccc-cccccCCCCCCEEECCCCCCCC--Ch-h
Confidence            8865433345567899999998872 22222  267899999999887322 1247889999999999998865  23 3


Q ss_pred             hcCCCCCcEEeccC
Q 015886          273 ISKLPLLEYLSMTK  286 (398)
Q Consensus       273 ~~~~~~L~~L~l~~  286 (398)
                      +..+++|+.|+|++
T Consensus       196 l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCSEEEEEE
T ss_pred             hcCCCCCCEEEccC
Confidence            67889999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=8.9e-10  Score=100.63  Aligned_cols=185  Identities=16%  Similarity=0.134  Sum_probs=131.7

Q ss_pred             ccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEE
Q 015886          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (398)
Q Consensus       135 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~  214 (398)
                      ...++++..+.++++.+........+++|++|+++++.+.+-.   .+..++.|+.|++.++.......+..+++|+.|.
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc---hhhcccccchhccccCccCCCCcccccccCCEee
Confidence            3456788888888887765555667789999999888774321   2567899999999887654434566678999999


Q ss_pred             EecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccc
Q 015886          215 LVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS  292 (398)
Q Consensus       215 l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~  292 (398)
                      +.++. +..+.  ...+.++.+...++.... ...+..+++++.|+++++.+.+.  .. +..+|+|+.|++++| .++.
T Consensus       270 l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l--~~-l~~l~~L~~L~L~~n-~l~~  343 (384)
T d2omza2         270 LGANQ-ISNISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDI--SP-VSSLTKLQRLFFANN-KVSD  343 (384)
T ss_dssp             CCSSC-CCCCGGGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCC--GG-GGGCTTCCEEECCSS-CCCC
T ss_pred             ccCcc-cCCCCcccccccccccccccccccc-ccccchhcccCeEECCCCCCCCC--cc-cccCCCCCEEECCCC-CCCC
Confidence            98772 22221  256677888877665221 22467789999999999888763  22 567899999999998 4444


Q ss_pred             cc--ccccccceEeccccccce-eccccCCCcceEEEec
Q 015886          293 VR--ISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHG  328 (398)
Q Consensus       293 ~~--~~~~~L~~L~l~~c~~~~-~~~~~~p~L~~l~~~~  328 (398)
                      +.  ..+++|++|++++|.... .-...+++|+.|.+++
T Consensus       344 l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         344 VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCC
T ss_pred             ChhHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCC
Confidence            43  267899999999886432 1246678999999877

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.6e-10  Score=99.09  Aligned_cols=175  Identities=14%  Similarity=0.050  Sum_probs=82.0

Q ss_pred             ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce-ee
Q 015886          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-LD  203 (398)
Q Consensus       127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~-~~  203 (398)
                      ....+|..+.  ++|++|+|+++.+...  ..+..+++|++|+|+++.++.  +.. ...+++|+.|++++|..... ..
T Consensus        21 ~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~   95 (266)
T d1p9ag_          21 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLL   95 (266)
T ss_dssp             CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-ccccccccccccccccccccccc
Confidence            3345565442  4677777777766432  334566777777776665531  111 23456666666666543211 12


Q ss_pred             cCCCCCCceEEEecCCCcc---eeeecccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCC
Q 015886          204 LVNLSNLKEIILVNTSDIK---RVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLL  279 (398)
Q Consensus       204 i~~~~~L~~L~l~~~~~l~---~~~~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  279 (398)
                      +..+++|+.|.+.++....   ......++++.+.+.++..... ...+..+++|+.++++++.+.... ...+..+++|
T Consensus        96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L  174 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENL  174 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTC
T ss_pred             cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC-cccccccccc
Confidence            2334566666666551111   1111334555555554431111 111234555555555555543311 1223445555


Q ss_pred             cEEeccCccccccccc---cccccceEecccc
Q 015886          280 EYLSMTKCHKLTSVRI---SSPCLKTLILECC  308 (398)
Q Consensus       280 ~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c  308 (398)
                      +.|+|+++ .++.++.   ..++|+.|++++.
T Consensus       175 ~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         175 DTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             ceeecccC-CCcccChhHCCCCCCCEEEecCC
Confidence            55555554 2333332   2334444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=9.6e-10  Score=97.37  Aligned_cols=119  Identities=17%  Similarity=0.160  Sum_probs=75.2

Q ss_pred             cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccce
Q 015886          227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKT  302 (398)
Q Consensus       227 ~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~  302 (398)
                      ..++|+.+.+.++....  +....+++|++|++.++...... ...+..++.++.|+++++ .++.+.    ..+++|+.
T Consensus       148 ~l~~L~~l~l~~n~l~~--l~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         148 GMKKLSYIRIADTNITT--IPQGLPPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GCTTCCEEECCSSCCCS--CCSSCCTTCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCE
T ss_pred             cccccCccccccCCccc--cCcccCCccCEEECCCCcCCCCC-hhHhhccccccccccccc-ccccccccccccccccee
Confidence            34667777777665221  11234678888888876655432 233567788888888886 333332    25678999


Q ss_pred             Eeccccccc--eeccccCCCcceEEEeccce-----------eeccccccccceeeeecc
Q 015886          303 LILECCDKL--IQVEIETPNLSIFKYHGDLI-----------SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       303 L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----------~~~~~~~~L~~l~i~~~~  349 (398)
                      |++++|...  ......+|+|+.|.+++++.           .......+|+.+.+..+.
T Consensus       224 L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             eecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            999888532  12235578888888888765           123445678888885553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=8.2e-10  Score=96.82  Aligned_cols=186  Identities=16%  Similarity=0.085  Sum_probs=100.7

Q ss_pred             EEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecC
Q 015886          120 VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE  197 (398)
Q Consensus       120 ~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~  197 (398)
                      .+.........+|..+.  +++++|+|+++.+...  ..+..+++|+.|+++++.+..-.. .....++.++.+.+....
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-cccccccccccccccccc
Confidence            34333333445555442  5678888888876432  346677888888888776622111 124556777777766555


Q ss_pred             Cccee---ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHH
Q 015886          198 GLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWL  269 (398)
Q Consensus       198 ~~~~~---~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~  269 (398)
                      .+..+   .+..+++|+.|.+.++. ...+.    ...++|+.+++.++.-... ...+..+++|++|+++++.+..-. 
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~-  169 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-  169 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-
T ss_pred             ccccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc-
Confidence            44433   23445777777777762 11111    2455667777666552111 112445666777777666654311 


Q ss_pred             hhhhcCCCCCcEEeccCcccccccc---ccccccceEecccccc
Q 015886          270 CNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDK  310 (398)
Q Consensus       270 ~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~  310 (398)
                      ...+..+++|+.+.+.++....-.+   ..+++|++|+++++..
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence            2234556667777766652221111   1345566666655543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.3e-09  Score=94.47  Aligned_cols=165  Identities=18%  Similarity=0.107  Sum_probs=100.9

Q ss_pred             CCeeEEEEeccccCCCCccccC-cccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-cCCCCCCceEEEe
Q 015886          139 ESLHVLELSYCKLQQPSENVKL-FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD-LVNLSNLKEIILV  216 (398)
Q Consensus       139 ~~L~~L~L~~~~l~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~-i~~~~~L~~L~l~  216 (398)
                      .++.+.+.++..+...  +..+ ++|++|+|+++.++.-.. ..+..+++|++|++++|. ++.+. ...+++|+.|+++
T Consensus        10 ~~~~~v~C~~~~L~~i--P~~lp~~l~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTAL--PPDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSC--CSCCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCee--CcCcCcCCCEEECcCCcCCCcCH-HHhhcccccccccccccc-ccccccccccccccccccc
Confidence            4455566666666532  2233 579999999987732111 125678999999999884 33333 3446889999988


Q ss_pred             cCC--CcceeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccc
Q 015886          217 NTS--DIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV  293 (398)
Q Consensus       217 ~~~--~l~~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~  293 (398)
                      ++.  .........++|+.++++++.... ....+..+++++.|++.++.+..- ....+..+++|+.|+++++ .++.+
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l-~~~~~~~l~~l~~l~l~~N-~l~~~  163 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN-NLTEL  163 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS-CCSCC
T ss_pred             cccccccccccccccccccccccccccceeecccccccccccccccccccccee-ccccccccccchhcccccc-ccccc
Confidence            872  222223356778888887765221 122345667788888877665432 1233455677888888775 33333


Q ss_pred             cc----cccccceEeccccc
Q 015886          294 RI----SSPCLKTLILECCD  309 (398)
Q Consensus       294 ~~----~~~~L~~L~l~~c~  309 (398)
                      ..    .+++|++|+++++.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSC
T ss_pred             CccccccccccceeecccCC
Confidence            22    45677777777665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.85  E-value=1.3e-09  Score=96.95  Aligned_cols=193  Identities=11%  Similarity=0.050  Sum_probs=118.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEE
Q 015886          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  191 (398)
                      ++++.|+++.+......+|..+..+++|++|+|+++.+...  .....++.|+.++++++.+... +..-+..++.|+.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCccccee
Confidence            59999999864444457899999999999999999977432  4567789999999998876321 11225788999999


Q ss_pred             EeeecCCccee--ecCCCCCC-ceEEEecCCCcceee---ecccCceEEEEeeee-ccceeEeecCCCCCceEEeeccCC
Q 015886          192 EIRSCEGLESL--DLVNLSNL-KEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI  264 (398)
Q Consensus       192 ~l~~~~~~~~~--~i~~~~~L-~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~  264 (398)
                      +++++.....+  .+..+.++ +.+.+..+ .+....   ........+++..+. .......+..+++++.+++.++.+
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             eccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99988654332  12233443 66666554 111111   122233445544433 112223345667777777776655


Q ss_pred             chHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEecccccc
Q 015886          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK  310 (398)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~  310 (398)
                      .... . .+..+++|+.|+++++.-...++.   .+++|++|+++++..
T Consensus       234 ~~~~-~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         234 AFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             cccc-c-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            4321 1 245567777777777643323333   456777777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.83  E-value=1.2e-08  Score=91.60  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             ccccceEeccccccceeccccCCCcceEEEeccce-eeccccccccceeeeecc
Q 015886          297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       297 ~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~~~-~~~~~~~~L~~l~i~~~~  349 (398)
                      +++|++|++++|. +..+....|+|+.|.+.++.. .+-+...+|++++++.+.
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNP  335 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCc-cCccccccCCCCEEECCCCcCCccccccCCCCEEECcCCc
Confidence            4677777777764 334445566777777776665 332334567777775543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=3.5e-10  Score=82.25  Aligned_cols=43  Identities=23%  Similarity=0.482  Sum_probs=37.9

Q ss_pred             CCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhcccc
Q 015886            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP   50 (398)
Q Consensus         8 ~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~~~   50 (398)
                      ..|.|+.||+||+.+||+||+.+|++++++|||+|+++..+.+
T Consensus         2 k~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~   44 (100)
T d1nexb1           2 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST   44 (100)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             CCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
Confidence            3689999999999999999999999999999999997654433

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.2e-09  Score=79.82  Aligned_cols=38  Identities=32%  Similarity=0.484  Sum_probs=36.2

Q ss_pred             CCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhh
Q 015886            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (398)
Q Consensus         8 ~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~l   45 (398)
                      ..|.|+.||+||+.+||+||+++|+++++.|||+|+++
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=1.8e-08  Score=88.94  Aligned_cols=191  Identities=16%  Similarity=0.141  Sum_probs=115.6

Q ss_pred             ccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce----eecCCCCCC
Q 015886          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES----LDLVNLSNL  210 (398)
Q Consensus       135 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~----~~i~~~~~L  210 (398)
                      +..+++|+.|++.++.+...+ ...++.++.|.+.++.+..-. ...+...+.++.+....+.....    .....+++|
T Consensus        75 f~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~~~n~l~~l~-~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L  152 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  152 (305)
T ss_dssp             TTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             hhCCCccCEecccCCccCcCc-cchhhhhhhhhccccchhhhh-hhhhhccccccccccccccccccCCCcccccccccc
Confidence            334555555555555443221 122344555555444432111 11234455566665554432211    123346789


Q ss_pred             ceEEEecCCCcceeee-cccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886          211 KEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (398)
Q Consensus       211 ~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (398)
                      +.+.+.+| .+..+.. ..++|++|+++++.... ....+..++.++.|+++++.+.... ...+..+++|+.|+++++ 
T Consensus       153 ~~l~l~~n-~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N-  229 (305)
T d1xkua_         153 SYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-  229 (305)
T ss_dssp             CEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-
T ss_pred             CccccccC-CccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccc-cccccccccceeeecccc-
Confidence            99999887 3333332 46789999998876221 1234678899999999988876532 244667899999999997 


Q ss_pred             ccccccc---cccccceEecccccccee----------ccccCCCcceEEEeccce
Q 015886          289 KLTSVRI---SSPCLKTLILECCDKLIQ----------VEIETPNLSIFKYHGDLI  331 (398)
Q Consensus       289 ~~~~~~~---~~~~L~~L~l~~c~~~~~----------~~~~~p~L~~l~~~~~~~  331 (398)
                      .++.++.   .+++|++|+++++.. +.          .....++|+.+.+.|..+
T Consensus       230 ~L~~lp~~l~~l~~L~~L~Ls~N~i-~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         230 KLVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCSSCCTTTTTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccccccccCCCEEECCCCcc-CccChhhccCcchhcccCCCCEEECCCCcC
Confidence            4555543   578999999999863 22          234567899999988554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=9.9e-09  Score=89.69  Aligned_cols=201  Identities=11%  Similarity=0.049  Sum_probs=138.9

Q ss_pred             cccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcc--eeecCCCCCCceEEEecCCCcceee----ecccCceEE
Q 015886          161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNAL  234 (398)
Q Consensus       161 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~--~~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l  234 (398)
                      +++++|+|+++.++.-.- ..+.+++.|+.|+++++....  ......++.++.+.+.....+..+.    ..+++|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCH-HHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            578999999998732111 125678999999998764322  1122335788888776664454443    256899999


Q ss_pred             EEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccccc
Q 015886          235 AIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD  309 (398)
Q Consensus       235 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~  309 (398)
                      +++++.... ....+..+++|+.+++.++.+.... ...++.+++|+.|+++++ .++.++.    .+++|+.+.+.++.
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~-~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccC-hhHhccccchhhcccccC-cccccchhhhccccccchhhhhhcc
Confidence            998876322 1224567889999999988876422 344677899999999997 4444433    57899999999887


Q ss_pred             cce---eccccCCCcceEEEeccce-----eeccccccccceeeeecccc-hhhHHHHHHHHHH
Q 015886          310 KLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHL-MVNIEWVVEYFEI  364 (398)
Q Consensus       310 ~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~~-~~~~~~~~~~~~~  364 (398)
                      ...   .....+++|+.+++.+...     .++.+.++|+.+.+..+.-. ..+..|+....+.
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~  252 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK  252 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHh
Confidence            652   3446678999999999877     66788999999999665311 2345565544443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=2.1e-09  Score=96.93  Aligned_cols=187  Identities=20%  Similarity=0.191  Sum_probs=94.2

Q ss_pred             hhhHHHHHHHHHh-CCCeEEEEEecCCcc---ccCCccccCCCCeeEEEEeccccCCC------------CccccCcccc
Q 015886          101 ASLAGRCLGLAIE-SEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP------------SENVKLFSLR  164 (398)
Q Consensus       101 ~~~~~~~l~~~~~-~~l~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~l~~~------------~~~~~~~~L~  164 (398)
                      .+.+..++..... ..+++|+++.+....   ..+...+...++|+.|++.++.....            .....+++|+
T Consensus        17 ~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~   96 (344)
T d2ca6a1          17 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   96 (344)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcc
Confidence            3444444444333 467777765422111   12333445567777787776543211            1123467778


Q ss_pred             eEEEEEEEeCHHH---HHHHHhcCccccEEEeeecCCcc--------ee---e----cCCCCCCceEEEecCC----Ccc
Q 015886          165 KLALREVCADDQA---IASLISGCPLIEYLEIRSCEGLE--------SL---D----LVNLSNLKEIILVNTS----DIK  222 (398)
Q Consensus       165 ~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~~~~~~--------~~---~----i~~~~~L~~L~l~~~~----~l~  222 (398)
                      .|+|+++.+++..   +...+..++.|++|++.+|..-.        .+   .    ....+.|+.+.+.++.    ...
T Consensus        97 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~  176 (344)
T d2ca6a1          97 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  176 (344)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             cccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccc
Confidence            8888777764433   44445567778888877764210        00   0    0123566666665541    011


Q ss_pred             eee---ecccCceEEEEeeeeccc------eeEeecCCCCCceEEeeccCCchHH---HhhhhcCCCCCcEEeccCc
Q 015886          223 RVE---IKTSNVNALAIHQTYLFP------IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       223 ~~~---~~~p~L~~l~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c  287 (398)
                      .+.   ...++|+++++.++....      ....+..+++|+.|+++++.+++..   +...++.+++|+.|++++|
T Consensus       177 ~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         177 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            111   134556666665544110      0112345566666666666655432   2333455666666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.1e-09  Score=82.43  Aligned_cols=122  Identities=16%  Similarity=0.110  Sum_probs=55.1

Q ss_pred             CCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886          137 YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (398)
Q Consensus       137 ~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l  215 (398)
                      ++.+|++|+|+++.+... .....+++|+.|+|++|.+..                         --.+..+++|+.|++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-------------------------l~~~~~l~~L~~L~l   70 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-------------------------LDGFPLLRRLKTLLV   70 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-------------------------ECCCCCCSSCCEEEC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-------------------------cCCcccCcchhhhhc
Confidence            445566666666665433 222334455555555444321                         001223445555555


Q ss_pred             ecCCCcceee----ecccCceEEEEeeeecc--ceeEeecCCCCCceEEeeccCCchHH--HhhhhcCCCCCcEEec
Q 015886          216 VNTSDIKRVE----IKTSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSM  284 (398)
Q Consensus       216 ~~~~~l~~~~----~~~p~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l  284 (398)
                      ++| .+..+.    ..+|+|+.|+++++...  +....+..+++|++|+++++.+....  -...+..+|+|+.|+-
T Consensus        71 s~N-~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          71 NNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CSS-CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccc-cccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            554 222221    13445555555444311  11112455666666666665543311  1223455666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.51  E-value=1.1e-09  Score=90.50  Aligned_cols=79  Identities=18%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             CeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeee
Q 015886          116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRS  195 (398)
Q Consensus       116 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~  195 (398)
                      .+.+.+....+....++..+..+++|++|+|+++.+...+....+++|+.|+|++|.+++  +..+...++.|+.|++.+
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccccc
Confidence            444444442233334555566677888888888877655556677888888888887732  111223345677777766


Q ss_pred             c
Q 015886          196 C  196 (398)
Q Consensus       196 ~  196 (398)
                      |
T Consensus       103 N  103 (198)
T d1m9la_         103 N  103 (198)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.50  E-value=2.9e-07  Score=82.24  Aligned_cols=70  Identities=23%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             cCCCCCcEEeccCccccccccccccccceEeccccccceeccccCCCcceEEEeccce-eeccccccccceee
Q 015886          274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSL  345 (398)
Q Consensus       274 ~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~~~-~~~~~~~~L~~l~i  345 (398)
                      ..+++|+.|++++| .++.++..+++|++|++++|. ++.+....++|+.|.+++++. .+-.-..+|+.+.+
T Consensus       281 ~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~L~~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         281 DLPPSLEELNVSNN-KLIELPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM  351 (353)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             ccCCCCCEEECCCC-ccCccccccCCCCEEECCCCc-CCccccccCCCCEEECcCCcCCCCCccccccCeeEC
Confidence            44678999999887 466777778889999998775 445555566899988888766 22222345666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=7.6e-08  Score=89.33  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=38.6

Q ss_pred             CCCeEEEEEecCCccc---cCCccccCCCCeeEEEEeccccCCC-------CccccCcccceEEEEEEEeCHHHHH---H
Q 015886          114 SEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP-------SENVKLFSLRKLALREVCADDQAIA---S  180 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~-------~~~~~~~~L~~L~L~~~~~~~~~l~---~  180 (398)
                      ++++.|++..+.....   .+...+..+++|++|+|+++.+...       .......+|++|+|++|.+++.++.   .
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            4566666655432221   2223334455666666665544321       0011123566666666555443322   2


Q ss_pred             HHhcCccccEEEeeec
Q 015886          181 LISGCPLIEYLEIRSC  196 (398)
Q Consensus       181 l~~~cp~Le~L~l~~~  196 (398)
                      .+..++.|++|++.+|
T Consensus       107 ~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HTTSCTTCCEEECCSS
T ss_pred             hhhccccccccccccc
Confidence            2345566666665544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.2e-07  Score=76.31  Aligned_cols=177  Identities=16%  Similarity=0.126  Sum_probs=96.7

Q ss_pred             cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee--
Q 015886          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD--  203 (398)
Q Consensus       128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~--  203 (398)
                      ...+|..++  +++++|+++++.+...  ..+..+++|++|+++++.+....-...+.+++.++++.+..+..+....  
T Consensus        20 l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          20 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             CSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence            346666553  5789999998877533  3457788999999988765221101124567888888887766554443  


Q ss_pred             -cCCCCCCceEEEecCCCcceeee--cccCceEEEEeeeeccce-e---EeecCC-CCCceEEeeccCCchHHHhhhhcC
Q 015886          204 -LVNLSNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPI-E---VNVSSC-GNLKCLKFDFLPIEDEWLCNGISK  275 (398)
Q Consensus       204 -i~~~~~L~~L~l~~~~~l~~~~~--~~p~L~~l~l~~~~~~~~-~---~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~  275 (398)
                       +..+++|+.|.+.++ .+.....  ...+++.+.......... .   ..+..+ ..++.|++.++.+....  .....
T Consensus        98 ~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~--~~~~~  174 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH--NCAFN  174 (242)
T ss_dssp             SEECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC--TTTTT
T ss_pred             cccccccccccccchh-hhcccccccccccccccccccccccccccccccccccccccceeeecccccccccc--ccccc
Confidence             344678888888877 2222221  233444443322221000 0   112223 36777777766654311  11122


Q ss_pred             CCCCcEEeccCccccccccc----cccccceEeccccc
Q 015886          276 LPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD  309 (398)
Q Consensus       276 ~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~  309 (398)
                      .++++.+....+..++.++.    .+++|++|+++++.
T Consensus       175 ~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             chhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            35555555444445555543    45677777776654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=4.3e-08  Score=73.97  Aligned_cols=52  Identities=17%  Similarity=0.162  Sum_probs=29.5

Q ss_pred             EEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeec
Q 015886          143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC  196 (398)
Q Consensus       143 ~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~  196 (398)
                      .|+++++.+...+....+++|++|+++++.+..  +..-+..+++|+.|+++++
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N   53 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDN   53 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccc
Confidence            466666666544445566667777766666531  1111345666666666655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.43  E-value=1.2e-07  Score=85.11  Aligned_cols=220  Identities=15%  Similarity=0.119  Sum_probs=146.5

Q ss_pred             cCCccccCCCCeeEEEEeccccCCC------CccccCcccceEEEEEEEeC------HHH---HHHHHhcCccccEEEee
Q 015886          130 NLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCAD------DQA---IASLISGCPLIEYLEIR  194 (398)
Q Consensus       130 ~l~~~~~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~~~------~~~---l~~l~~~cp~Le~L~l~  194 (398)
                      .+...+....+|++|+|+++.+...      ......++|+.|++.++...      ...   +...+..|+.|++|++.
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            4444556678999999999876433      34567789999999877541      222   33446689999999999


Q ss_pred             ecCCcc----ee--ecCCCCCCceEEEecCCC-----------cceee-----ecccCceEEEEeeeeccc-----eeEe
Q 015886          195 SCEGLE----SL--DLVNLSNLKEIILVNTSD-----------IKRVE-----IKTSNVNALAIHQTYLFP-----IEVN  247 (398)
Q Consensus       195 ~~~~~~----~~--~i~~~~~L~~L~l~~~~~-----------l~~~~-----~~~p~L~~l~l~~~~~~~-----~~~~  247 (398)
                      +|..-.    .+  .+...++|++|.+.+|..           +....     ...+.|+.+.++++....     ....
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            885321    11  122358999999998821           11111     145788899988765211     1112


Q ss_pred             ecCCCCCceEEeeccCCchHHH----hhhhcCCCCCcEEeccCccc-------cccccccccccceEeccccccce----
Q 015886          248 VSSCGNLKCLKFDFLPIEDEWL----CNGISKLPLLEYLSMTKCHK-------LTSVRISSPCLKTLILECCDKLI----  312 (398)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~c~~-------~~~~~~~~~~L~~L~l~~c~~~~----  312 (398)
                      +..++.|+.|+++.+.+.++..    ...+..+++|+.|+++++.-       +.......++|++|++++|..-.    
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            4567899999999999887543    34467789999999998631       11222367899999999998531    


Q ss_pred             ec---c--ccCCCcceEEEeccce---------eec-cccccccceeeeecc
Q 015886          313 QV---E--IETPNLSIFKYHGDLI---------SFS-SNALSLSETSLCFSS  349 (398)
Q Consensus       313 ~~---~--~~~p~L~~l~~~~~~~---------~~~-~~~~~L~~l~i~~~~  349 (398)
                      .+   .  ...+.|+.|.++++.+         ..+ .+.+.|++++++.+.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            11   1  2345799999998876         222 356789999986553

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.8e-08  Score=75.36  Aligned_cols=38  Identities=37%  Similarity=0.604  Sum_probs=35.0

Q ss_pred             CCccCCCCC----HHHHHHHhccCChhHHHHHhhcccchhhh
Q 015886            8 EVDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (398)
Q Consensus         8 ~~D~i~~LP----deiL~~I~s~L~~~~~~~~~~vskrWr~l   45 (398)
                      ..|.|+.||    |||+.+||+||+.+|++++++|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            468999999    59999999999999999999999999864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6e-08  Score=90.07  Aligned_cols=104  Identities=21%  Similarity=0.291  Sum_probs=77.1

Q ss_pred             CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC------CccccCcccceEEEEEEEeCHHHHHHHHhc----
Q 015886          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQAIASLISG----  184 (398)
Q Consensus       115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~----  184 (398)
                      +|++|+++........+...+..+++++.|+|.+|.+...      .....+++|+.|+|+++.+++.++..+...    
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            6889999886555555555566678999999999987543      223678999999999999888877776543    


Q ss_pred             CccccEEEeeecCCcce----e--ecCCCCCCceEEEecC
Q 015886          185 CPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNT  218 (398)
Q Consensus       185 cp~Le~L~l~~~~~~~~----~--~i~~~~~L~~L~l~~~  218 (398)
                      .+.|++|++++|..-..    +  .+..+++|++|++.++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            45799999999853211    1  2345689999999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.2e-07  Score=78.72  Aligned_cols=186  Identities=16%  Similarity=0.104  Sum_probs=109.0

Q ss_pred             CCCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEe-CHHHHHHHHhcCccc
Q 015886          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCA-DDQAIASLISGCPLI  188 (398)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~L  188 (398)
                      +++++|+++...  -..+|.. +..+++|++|+++++.+...   ..+..+++++++.+..+.. ... ....+..++.|
T Consensus        29 ~~l~~L~Ls~n~--i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~-~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCC--CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE-CTTSEECCTTC
T ss_pred             CCCCEEECcCCc--CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc-ccccccccccc
Confidence            589999998743  3456664 45689999999999876432   3456788999998865422 111 11235788999


Q ss_pred             cEEEeeecCCcceeecCCCCCCceEEEecC--CCcceeeec-----ccCceEEEEeeeeccceeEeecCCCCCceEEe-e
Q 015886          189 EYLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIK-----TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKF-D  260 (398)
Q Consensus       189 e~L~l~~~~~~~~~~i~~~~~L~~L~l~~~--~~l~~~~~~-----~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l-~  260 (398)
                      +.|.+.++.....-....+.+++.+.....  ..+..+...     .+.+..+.+.++............+++..+.. .
T Consensus       106 ~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~  185 (242)
T d1xwdc1         106 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD  185 (242)
T ss_dssp             CEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTT
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccc
Confidence            999999875432222222344555543322  244444321     24677888876652221112223455555543 4


Q ss_pred             ccCCchHHHhhhhcCCCCCcEEeccCccccccccc-cccccceEe
Q 015886          261 FLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLI  304 (398)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~L~~L~  304 (398)
                      ++.+..- ....+.++++|+.|+++++. ++.++. .+.+|..|.
T Consensus       186 ~n~l~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         186 NNNLEEL-PNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLR  228 (242)
T ss_dssp             CTTCCCC-CTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEE
T ss_pred             ccccccc-cHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccc
Confidence            4544431 12346788999999999963 555544 344444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.6e-07  Score=72.26  Aligned_cols=61  Identities=21%  Similarity=0.022  Sum_probs=26.5

Q ss_pred             ecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc--cccccc--ccccccceEeccccc
Q 015886          248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH--KLTSVR--ISSPCLKTLILECCD  309 (398)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~~~~~~--~~~~~L~~L~l~~c~  309 (398)
                      ++.+++|++|+++++.+.... ..+...+++|+.|+++++.  .+..+.  ..+++|++|++++|+
T Consensus        59 ~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cccCcchhhhhcccccccCCC-ccccccccccccceeccccccccccccccccccccchhhcCCCc
Confidence            344555555555555443310 1122334555555555542  111111  134555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.29  E-value=1.9e-08  Score=82.76  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=56.5

Q ss_pred             cccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEE
Q 015886          157 NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI  236 (398)
Q Consensus       157 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l  236 (398)
                      ...+++|+.|+|+++.+++-  .. +..+++|+.|++++|.. .                   .+..+....++|+.|++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i--~~-l~~l~~L~~L~Ls~N~i-~-------------------~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI--SS-LSGMENLRILSLGRNLI-K-------------------KIENLDAVADTLEELWI  100 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC--CC-HHHHTTCCEEECCEEEE-C-------------------SCSSHHHHHHHCCEEEC
T ss_pred             HhcccccceeECcccCCCCc--cc-ccCCccccChhhccccc-c-------------------ccccccccccccccccc
Confidence            45567777777777776321  11 34456677777666521 1                   11111112345555655


Q ss_pred             eeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886          237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (398)
Q Consensus       237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (398)
                      +++..... ..+..+++|+.|+++++.+.+-.....+..+++|+.|+++++
T Consensus       101 ~~N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         101 SYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cccccccc-ccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence            55542111 124556677777777666654322233556777777777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=1e-06  Score=66.17  Aligned_cols=39  Identities=15%  Similarity=0.106  Sum_probs=19.8

Q ss_pred             ecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886          248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (398)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (398)
                      ++.+++|++|+++++.+........+..+++|+.|++++
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            455556666666655554321112234556666666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.78  E-value=8.4e-06  Score=66.07  Aligned_cols=117  Identities=19%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             CCccccCCccccCCCCeeEEEEeccccCC-C--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce
Q 015886          125 RSERRNLPEIIFYVESLHVLELSYCKLQQ-P--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES  201 (398)
Q Consensus       125 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~-~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~  201 (398)
                      ......+|..+.  +++++|+|+++.+.. .  ..+..+++|+.|+|+++.+..-. ...+...+.|++|+++++.. ..
T Consensus        17 ~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~l-~~   92 (192)
T d1w8aa_          17 GRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKI-KE   92 (192)
T ss_dssp             TSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCC-CE
T ss_pred             CCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeeccccc-cc
Confidence            334446666543  578888888887742 2  44567788888888777662111 12245567777777777632 22


Q ss_pred             e---ecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCc
Q 015886          202 L---DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE  265 (398)
Q Consensus       202 ~---~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  265 (398)
                      +   .+.++++|+.|+++++ .+..+..                   -.+..+++|++|+|+++.+.
T Consensus        93 l~~~~F~~l~~L~~L~L~~N-~l~~i~~-------------------~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDN-QISCVMP-------------------GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSS-CCCEECT-------------------TSSTTCTTCCEEECTTCCBC
T ss_pred             cCHHHHhCCCcccccccCCc-cccccCH-------------------HHhcCCcccccccccccccc
Confidence            2   1334556666666554 2222221                   12456777777777766543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.73  E-value=2.9e-05  Score=62.76  Aligned_cols=79  Identities=15%  Similarity=0.040  Sum_probs=46.6

Q ss_pred             cCceEEEEeeeecc--ceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccce
Q 015886          229 SNVNALAIHQTYLF--PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKT  302 (398)
Q Consensus       229 p~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~  302 (398)
                      +++++|+++++...  .....+..+++|++|+++++.+.... ...+..+++|+.|+++++ .++.++.    ..++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeeccc-cccccCHHHHhCCCcccc
Confidence            46777777777621  22334566777777777776654422 233455677777777775 3333322    3556666


Q ss_pred             Eeccccc
Q 015886          303 LILECCD  309 (398)
Q Consensus       303 L~l~~c~  309 (398)
                      |+|+++.
T Consensus       107 L~L~~N~  113 (192)
T d1w8aa_         107 LNLYDNQ  113 (192)
T ss_dssp             EECCSSC
T ss_pred             cccCCcc
Confidence            6666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.11  E-value=0.00019  Score=56.30  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCccccEEEeeecCCcce-----e--ecCCCCCCceEEEecC
Q 015886          176 QAIASLISGCPLIEYLEIRSCEGLES-----L--DLVNLSNLKEIILVNT  218 (398)
Q Consensus       176 ~~l~~l~~~cp~Le~L~l~~~~~~~~-----~--~i~~~~~L~~L~l~~~  218 (398)
                      +.+..+...+|.|++|+|.++..+..     +  .+...++|++|++++|
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            45666666777777777765443321     1  1222356666666665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.55  E-value=0.00063  Score=53.09  Aligned_cols=39  Identities=21%  Similarity=0.194  Sum_probs=20.4

Q ss_pred             ecCCCCCceEEee--ccCCchHH---HhhhhcCCCCCcEEeccC
Q 015886          248 VSSCGNLKCLKFD--FLPIEDEW---LCNGISKLPLLEYLSMTK  286 (398)
Q Consensus       248 ~~~~~~L~~L~l~--~~~~~~~~---~~~~~~~~~~L~~L~l~~  286 (398)
                      +...++|+.++|.  ++.++++.   +...+...++|+.|+++.
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3445666655554  34454433   333344566666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0012  Score=50.74  Aligned_cols=16  Identities=19%  Similarity=0.191  Sum_probs=7.2

Q ss_pred             cCCCCCceEEeeccCC
Q 015886          249 SSCGNLKCLKFDFLPI  264 (398)
Q Consensus       249 ~~~~~L~~L~l~~~~~  264 (398)
                      .++++|+.|+++++.+
T Consensus        53 ~~l~~L~~L~Ls~N~l   68 (156)
T d2ifga3          53 RGLGELRNLTIVKSGL   68 (156)
T ss_dssp             CSCCCCSEEECCSSCC
T ss_pred             ccccccCcceeecccc
Confidence            3444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0025  Score=48.97  Aligned_cols=12  Identities=25%  Similarity=0.656  Sum_probs=5.4

Q ss_pred             CCCCceEEEecC
Q 015886          207 LSNLKEIILVNT  218 (398)
Q Consensus       207 ~~~L~~L~l~~~  218 (398)
                      +++|+.|.+.++
T Consensus        55 l~~L~~L~Ls~N   66 (156)
T d2ifga3          55 LGELRNLTIVKS   66 (156)
T ss_dssp             CCCCSEEECCSS
T ss_pred             ccccCcceeecc
Confidence            344444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.16  E-value=0.005  Score=47.75  Aligned_cols=101  Identities=17%  Similarity=0.158  Sum_probs=69.3

Q ss_pred             cCCCCCceEEeecc-CCchHHHh---hhhcCCCCCcEEeccCccccc----ccc---ccccccceEeccccccce-----
Q 015886          249 SSCGNLKCLKFDFL-PIEDEWLC---NGISKLPLLEYLSMTKCHKLT----SVR---ISSPCLKTLILECCDKLI-----  312 (398)
Q Consensus       249 ~~~~~L~~L~l~~~-~~~~~~~~---~~~~~~~~L~~L~l~~c~~~~----~~~---~~~~~L~~L~l~~c~~~~-----  312 (398)
                      ...|.|++|+|+++ .++++.+.   ..+...++|+.|+|++|..-.    .+.   ...+.|++|++++|..-.     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45689999999974 57775544   445677899999999973211    111   145789999999997641     


Q ss_pred             --eccccCCCcceEEEeccce------------eeccccccccceeeeecc
Q 015886          313 --QVEIETPNLSIFKYHGDLI------------SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       313 --~~~~~~p~L~~l~~~~~~~------------~~~~~~~~L~~l~i~~~~  349 (398)
                        +.....+.|+.|.+.+...            ..+...++|+++.+++..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence              2235567899999876432            444556788888886553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.73  E-value=0.0049  Score=47.69  Aligned_cols=18  Identities=11%  Similarity=0.187  Sum_probs=13.0

Q ss_pred             eeccccccccceeeeecc
Q 015886          332 SFSSNALSLSETSLCFSS  349 (398)
Q Consensus       332 ~~~~~~~~L~~l~i~~~~  349 (398)
                      ..++..+.|++++++.+.
T Consensus       126 ~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCCCcCEEeCcCCC
Confidence            445567889999886654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.002  Score=49.82  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=17.6

Q ss_pred             CCCCCceEEeeccCCch-HHHhhhhcCCCCCcEEeccC
Q 015886          250 SCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTK  286 (398)
Q Consensus       250 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~  286 (398)
                      .+++|+.|+++++.+++ ..+...+..+++|+.|++++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence            34555555555555443 12233334455555555555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.0015  Score=50.53  Aligned_cols=20  Identities=10%  Similarity=0.167  Sum_probs=14.5

Q ss_pred             HHHHHhcCccccEEEeeecC
Q 015886          178 IASLISGCPLIEYLEIRSCE  197 (398)
Q Consensus       178 l~~l~~~cp~Le~L~l~~~~  197 (398)
                      +..+...+|.|+.|++++|.
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~   76 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNR   76 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSC
T ss_pred             hHHHHHhCCCCCEeeCCCcc
Confidence            34455678888888888874